Index: /issm/trunk/src/Makefile.am =================================================================== --- /issm/trunk/src/Makefile.am (revision 9717) +++ /issm/trunk/src/Makefile.am (revision 9718) @@ -1,4 +1,4 @@ EXTRA_DIST = m perl pro -SUBDIRS = c mex +SUBDIRS = c mex ad Index: /issm/trunk/src/ad/Makefile.am =================================================================== --- /issm/trunk/src/ad/Makefile.am (revision 9718) +++ /issm/trunk/src/ad/Makefile.am (revision 9718) @@ -0,0 +1,1453 @@ +INCLUDES = @DAKOTAINCL@ @PETSCINCL@ @SLEPCINCL@ @MPIINCL@ @MATLABINCL@ @METISINCL@ @CHACOINCL@ @SCOTCHINCL@ @PLAPACKINCL@ @BLASLAPACKINCL@ @MKLINCL@ @MUMPSINCL@ @TRIANGLEINCL@ @HYPREINCL@ @MLINCL@ @TAOINCL@ @ADICINCL@ + +#Compile serial library, and then try and compile parallel library +if NOSERIAL +if NOPARALLEL +lib_LIBRARIES = +else +if AD +lib_LIBRARIES = libpISSM.a libOverload.a libAD.a +else +lib_LIBRARIES = libpISSM.a libOverload.a +endif +endif +else +if NOPARALLEL +lib_LIBRARIES = libISSM.a libOverload.a +else +if AD +lib_LIBRARIES = libISSM.a libpISSM.a libOverload.a libAD.a +else +lib_LIBRARIES = libISSM.a libpISSM.a libOverload.a +endif +endif +endif + +#Overload library, to overload any non-standard symbols. +libOverload_a_SOURCES = ./shared/String/stricmp.c +libOverload_a_CFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(COPTFLAGS) + +#AD library, for automatic differentiation +if AD +libAD_a_SOURCES = ./mini1.ad.c +else +libAD_a_SOURCES = +endif +libAD_a_CFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(COPTFLAGS) + +#Serial compilation +libISSM_a_SOURCES = ./include/macros.h\ + ./include/typedefs.h\ + ./include/types.h\ + ./include/globals.h\ + ./include/include.h\ + ./objects/objects.h\ + ./objects/Object.h\ + ./objects/Bamg/BamgGeom.h\ + ./objects/Bamg/BamgGeom.cpp\ + ./objects/Bamg/BamgMesh.h\ + ./objects/Bamg/BamgMesh.cpp\ + ./objects/Bamg/BamgOpts.h\ + ./objects/Bamg/BamgOpts.cpp\ + ./objects/Bamg/CrackedEdge.h\ + ./objects/Bamg/CrackedEdge.cpp\ + ./objects/Bamg/Curve.h\ + ./objects/Bamg/Curve.cpp\ + ./objects/Bamg/Direction.h\ + ./objects/Bamg/Direction.cpp\ + ./objects/Bamg/DoubleAndInt.h\ + ./objects/Bamg/Edge.h\ + ./objects/Bamg/Edge.cpp\ + ./objects/Bamg/GeomEdge.h\ + ./objects/Bamg/GeomEdge.cpp\ + ./objects/Bamg/GeomSubDomain.h\ + ./objects/Bamg/GeomSubDomain.cpp\ + ./objects/Bamg/GeomVertex.h\ + ./objects/Bamg/GeomVertex.cpp\ + ./objects/Bamg/Geometry.cpp\ + ./objects/Bamg/Geometry.h\ + ./objects/Bamg/ListofIntersectionTriangles.cpp\ + ./objects/Bamg/ListofIntersectionTriangles.h\ + ./objects/Bamg/EigenMetric.cpp\ + ./objects/Bamg/Metric.cpp\ + ./objects/Bamg/Metric.h\ + ./objects/Bamg/QuadTree.cpp\ + ./objects/Bamg/QuadTree.h\ + ./objects/Bamg/R2.h\ + ./objects/Bamg/SetOfE4.cpp\ + ./objects/Bamg/SetOfE4.h\ + ./objects/Bamg/SubDomain.h\ + ./objects/Bamg/SubDomain.cpp\ + ./objects/Bamg/AdjacentTriangle.h\ + ./objects/Bamg/AdjacentTriangle.cpp\ + ./objects/Bamg/Triangle.cpp\ + ./objects/Bamg/Triangle.h\ + ./objects/Bamg/BamgVertex.cpp\ + ./objects/Bamg/BamgVertex.h\ + ./objects/Bamg/VertexOnEdge.h\ + ./objects/Bamg/VertexOnEdge.cpp\ + ./objects/Bamg/VertexOnGeom.h\ + ./objects/Bamg/VertexOnGeom.cpp\ + ./objects/Bamg/VertexOnVertex.h\ + ./objects/Bamg/VertexOnVertex.cpp\ + ./objects/Bamg/Mesh.cpp\ + ./objects/Bamg/Mesh.h\ + ./objects/KML/KML_Attribute.cpp\ + ./objects/KML/KML_Attribute.h\ + ./objects/KML/KML_ColorStyle.cpp\ + ./objects/KML/KML_ColorStyle.h\ + ./objects/KML/KML_Container.cpp\ + ./objects/KML/KML_Container.h\ + ./objects/KML/KML_Document.cpp\ + ./objects/KML/KML_Document.h\ + ./objects/KML/KML_Feature.cpp\ + ./objects/KML/KML_Feature.h\ + ./objects/KML/KML_File.cpp\ + ./objects/KML/KML_File.h\ + ./objects/KML/KML_Folder.cpp\ + ./objects/KML/KML_Folder.h\ + ./objects/KML/KML_Geometry.cpp\ + ./objects/KML/KML_Geometry.h\ + ./objects/KML/KML_GroundOverlay.cpp\ + ./objects/KML/KML_GroundOverlay.h\ + ./objects/KML/KML_Icon.cpp\ + ./objects/KML/KML_Icon.h\ + ./objects/KML/KML_LatLonBox.cpp\ + ./objects/KML/KML_LatLonBox.h\ + ./objects/KML/KML_LinearRing.cpp\ + ./objects/KML/KML_LinearRing.h\ + ./objects/KML/KML_LineString.cpp\ + ./objects/KML/KML_LineString.h\ + ./objects/KML/KML_LineStyle.cpp\ + ./objects/KML/KML_LineStyle.h\ + ./objects/KML/KML_MultiGeometry.cpp\ + ./objects/KML/KML_MultiGeometry.h\ + ./objects/KML/KML_Object.cpp\ + ./objects/KML/KML_Object.h\ + ./objects/KML/KML_Overlay.cpp\ + ./objects/KML/KML_Overlay.h\ + ./objects/KML/KML_Placemark.cpp\ + ./objects/KML/KML_Placemark.h\ + ./objects/KML/KML_Polygon.cpp\ + ./objects/KML/KML_Polygon.h\ + ./objects/KML/KML_PolyStyle.cpp\ + ./objects/KML/KML_PolyStyle.h\ + ./objects/KML/KML_Style.cpp\ + ./objects/KML/KML_Style.h\ + ./objects/KML/KML_StyleSelector.cpp\ + ./objects/KML/KML_StyleSelector.h\ + ./objects/KML/KML_SubStyle.cpp\ + ./objects/KML/KML_SubStyle.h\ + ./objects/KML/KMLFileReadUtils.cpp\ + ./objects/KML/KMLFileReadUtils.h\ + ./objects/Options/Option.cpp\ + ./objects/Options/Option.h\ + ./objects/Options/OptionDouble.cpp\ + ./objects/Options/OptionDouble.h\ + ./objects/Options/OptionLogical.cpp\ + ./objects/Options/OptionLogical.h\ + ./objects/Options/OptionChar.cpp\ + ./objects/Options/OptionChar.h\ + ./objects/Options/OptionStruct.cpp\ + ./objects/Options/OptionStruct.h\ + ./objects/Options/OptionCell.cpp\ + ./objects/Options/OptionCell.h\ + ./objects/Options/OptionUtilities.cpp\ + ./objects/Options/OptionUtilities.h\ + ./objects/Gauss/GaussTria.h\ + ./objects/Gauss/GaussTria.cpp\ + ./objects/Gauss/GaussPenta.h\ + ./objects/Gauss/GaussPenta.cpp\ + ./objects/Update.h\ + ./objects/Element.h\ + ./objects/FemModel.h\ + ./objects/FemModel.cpp\ + ./objects/Material.h\ + ./objects/Load.h\ + ./objects/OptArgs.h\ + ./objects/OptPars.h\ + ./objects/Contour.h\ + ./objects/Contour.cpp\ + ./objects/Loads/Friction.h\ + ./objects/Loads/Friction.cpp\ + ./objects/DakotaPlugin.h\ + ./objects/DakotaPlugin.cpp\ + ./objects/Node.h\ + ./objects/Node.cpp\ + ./objects/Segment.h\ + ./objects/Segment.cpp\ + ./objects/Vertex.h\ + ./objects/Vertex.cpp\ + ./objects/Hook.h\ + ./objects/Hook.cpp\ + ./objects/Patch.h\ + ./objects/Patch.cpp\ + ./objects/DofIndexing.h\ + ./objects/DofIndexing.cpp\ + ./objects/IoModel.h\ + ./objects/IoModel.cpp\ + ./objects/ElementResults/ElementResultLocal.h\ + ./objects/ElementResults/DoubleElementResult.h\ + ./objects/ElementResults/DoubleElementResult.cpp\ + ./objects/ElementResults/TriaVertexElementResult.h\ + ./objects/ElementResults/TriaVertexElementResult.cpp\ + ./objects/ElementResults/PentaVertexElementResult.h\ + ./objects/ElementResults/PentaVertexElementResult.cpp\ + ./objects/ElementResults/BoolElementResult.h\ + ./objects/ElementResults/BoolElementResult.cpp\ + ./objects/ExternalResults/ExternalResult.h\ + ./objects/ExternalResults/BoolExternalResult.h\ + ./objects/ExternalResults/BoolExternalResult.cpp\ + ./objects/ExternalResults/DoubleExternalResult.h\ + ./objects/ExternalResults/DoubleExternalResult.cpp\ + ./objects/ExternalResults/DoubleVecExternalResult.h\ + ./objects/ExternalResults/DoubleVecExternalResult.cpp\ + ./objects/ExternalResults/DoubleMatExternalResult.h\ + ./objects/ExternalResults/DoubleMatExternalResult.cpp\ + ./objects/ExternalResults/IntExternalResult.h\ + ./objects/ExternalResults/IntExternalResult.cpp\ + ./objects/ExternalResults/StringExternalResult.h\ + ./objects/ExternalResults/StringExternalResult.cpp\ + ./objects/ExternalResults/PetscVecExternalResult.h\ + ./objects/ExternalResults/PetscVecExternalResult.cpp\ + ./objects/Elements/Tria.h\ + ./objects/Elements/Tria.cpp\ + ./objects/Elements/TriaHook.h\ + ./objects/Elements/TriaHook.cpp\ + ./objects/Elements/TriaRef.h\ + ./objects/Elements/TriaRef.cpp\ + ./objects/Inputs/Input.h\ + ./objects/Inputs/InputLocal.h\ + ./objects/Inputs/TriaVertexInput.h\ + ./objects/Inputs/TriaVertexInput.cpp\ + ./objects/Inputs/PentaVertexInput.h\ + ./objects/Inputs/PentaVertexInput.cpp\ + ./objects/Inputs/BoolInput.h\ + ./objects/Inputs/BoolInput.cpp\ + ./objects/Inputs/IntInput.h\ + ./objects/Inputs/IntInput.cpp\ + ./objects/Inputs/DoubleInput.h\ + ./objects/Inputs/DoubleInput.cpp\ + ./objects/Inputs/ControlInput.h\ + ./objects/Inputs/ControlInput.cpp\ + ./objects/Inputs/DatasetInput.h\ + ./objects/Inputs/DatasetInput.cpp\ + ./objects/Inputs/TransientInput.h\ + ./objects/Inputs/TransientInput.cpp\ + ./objects/Elements/Penta.h\ + ./objects/Elements/Penta.cpp\ + ./objects/Elements/PentaHook.h\ + ./objects/Elements/PentaHook.cpp\ + ./objects/Elements/PentaRef.h\ + ./objects/Elements/PentaRef.cpp\ + ./objects/Materials/Matice.h\ + ./objects/Materials/Matice.cpp\ + ./objects/Materials/Matpar.h\ + ./objects/Materials/Matpar.cpp\ + ./objects/Constraints/Constraint.h\ + ./objects/Constraints/SpcStatic.cpp\ + ./objects/Constraints/SpcStatic.h\ + ./objects/Constraints/SpcDynamic.cpp\ + ./objects/Constraints/SpcDynamic.h\ + ./objects/Constraints/SpcTransient.cpp\ + ./objects/Constraints/SpcTransient.h\ + ./objects/Loads/Penpair.cpp\ + ./objects/Loads/Penpair.h\ + ./objects/Loads/Pengrid.cpp\ + ./objects/Loads/Pengrid.h\ + ./objects/Loads/Icefront.cpp\ + ./objects/Loads/Icefront.h\ + ./objects/Loads/Riftfront.cpp\ + ./objects/Loads/Riftfront.h\ + ./objects/Loads/Numericalflux.cpp\ + ./objects/Loads/Numericalflux.h\ + ./objects/Numerics/ElementMatrix.h\ + ./objects/Numerics/ElementMatrix.cpp\ + ./objects/Numerics/ElementVector.h\ + ./objects/Numerics/ElementVector.cpp\ + ./objects/Params/Param.h\ + ./objects/Params/BoolParam.cpp\ + ./objects/Params/BoolParam.h\ + ./objects/Params/IntParam.cpp\ + ./objects/Params/IntParam.h\ + ./objects/Params/IntVecParam.cpp\ + ./objects/Params/IntVecParam.h\ + ./objects/Params/IntMatParam.cpp\ + ./objects/Params/IntMatParam.h\ + ./objects/Params/DoubleParam.cpp\ + ./objects/Params/DoubleParam.h\ + ./objects/Params/FileParam.cpp\ + ./objects/Params/FileParam.h\ + ./objects/Params/PetscMatParam.cpp\ + ./objects/Params/PetscMatParam.h\ + ./objects/Params/StringArrayParam.cpp\ + ./objects/Params/StringArrayParam.h\ + ./objects/Params/DoubleMatParam.cpp\ + ./objects/Params/DoubleMatParam.h\ + ./objects/Params/DoubleMatArrayParam.cpp\ + ./objects/Params/DoubleMatArrayParam.h\ + ./objects/Params/DoubleVecParam.cpp\ + ./objects/Params/DoubleVecParam.h\ + ./objects/Params/PetscVecParam.cpp\ + ./objects/Params/PetscVecParam.h\ + ./objects/Params/StringParam.cpp\ + ./objects/Params/StringParam.h\ + ./Container/Container.h\ + ./Container/Constraints.h\ + ./Container/Constraints.cpp\ + ./Container/DataSet.h\ + ./Container/DataSet.cpp\ + ./Container/Elements.h\ + ./Container/Elements.cpp\ + ./Container/Inputs.h\ + ./Container/Inputs.cpp\ + ./Container/Loads.h\ + ./Container/Loads.cpp\ + ./Container/Materials.h\ + ./Container/Materials.cpp\ + ./Container/Nodes.h\ + ./Container/Nodes.cpp\ + ./Container/Options.h\ + ./Container/Options.cpp\ + ./Container/Parameters.h\ + ./Container/Parameters.cpp\ + ./Container/Results.h\ + ./Container/Results.cpp\ + ./Container/Vertices.h\ + ./Container/Vertices.cpp\ + ./shared/shared.h\ + ./shared/Alloc/alloc.h\ + ./shared/Alloc/alloc.cpp\ + ./shared/Threads/issm_threads.h\ + ./shared/Threads/LaunchThread.cpp\ + ./shared/Threads/PartitionRange.cpp\ + ./shared/Matlab/matlabshared.h\ + ./shared/Matlab/PrintfFunction.cpp\ + ./shared/Matlab/ModuleBoot.cpp\ + ./shared/Matlab/mxGetAssignedField.cpp\ + ./shared/Matlab/mxGetField.cpp\ + ./shared/Matlab/CheckNumMatlabArguments.cpp\ + ./shared/Matrix/matrix.h\ + ./shared/Matrix/MatrixUtils.cpp\ + ./shared/Dofs/dofs.h\ + ./shared/Dofs/dofsetgen.cpp\ + ./shared/Numerics/numerics.h\ + ./shared/Numerics/isnan.h\ + ./shared/Numerics/isnan.cpp\ + ./shared/Numerics/Verbosity.h\ + ./shared/Numerics/Verbosity.cpp\ + ./shared/Numerics/IsInputConverged.cpp\ + ./shared/Numerics/GaussPoints.h\ + ./shared/Numerics/cross.cpp\ + ./shared/Numerics/norm.cpp\ + ./shared/Numerics/GaussPoints.cpp\ + ./shared/Numerics/BrentSearch.cpp\ + ./shared/Numerics/OptimalSearch.cpp\ + ./shared/Numerics/OptFunc.cpp\ + ./shared/Numerics/extrema.cpp\ + ./shared/Numerics/UnitConversion.cpp\ + ./shared/Numerics/PetscOptionsFromAnalysis.cpp\ + ./shared/Exceptions/exceptions.h\ + ./shared/Exceptions/Exceptions.cpp\ + ./shared/Exceptions/exprintf.cpp\ + ./shared/Exp/exp.h\ + ./shared/Exp/IsInPoly.cpp\ + ./shared/Exp/IsInPolySerial.cpp\ + ./shared/Exp/DomainOutlineRead.cpp\ + ./shared/Exp/DomainOutlineWrite.cpp\ + ./shared/TriMesh/trimesh.h\ + ./shared/TriMesh/AssociateSegmentToElement.cpp\ + ./shared/TriMesh/GridInsideHole.cpp\ + ./shared/TriMesh/OrderSegments.cpp\ + ./shared/TriMesh/SplitMeshForRifts.cpp\ + ./shared/TriMesh/TriMeshUtils.cpp\ + ./shared/Sorting/binary_search.cpp\ + ./shared/Sorting/sorting.h\ + ./shared/Elements/elements.h\ + ./shared/Elements/Paterson.cpp\ + ./shared/Elements/Arrhenius.cpp\ + ./shared/Elements/GetVerticesCoordinates.cpp\ + ./shared/Elements/GetLocalDofList.cpp\ + ./shared/Elements/GetGlobalDofList.cpp\ + ./shared/Elements/GetNumberOfDofs.cpp\ + ./shared/String/DescriptorIndex.cpp\ + ./shared/String/sharedstring.h\ + ./shared/Bamg/Abs.h \ + ./shared/Bamg/BigPrimeNumber.h\ + ./shared/Bamg/BigPrimeNumber.cpp\ + ./shared/Bamg/BinaryRand.h \ + ./shared/Bamg/det.h \ + ./shared/Bamg/Exchange.h \ + ./shared/Bamg/extrema.h \ + ./shared/Bamg/HeapSort.h \ + ./shared/Bamg/OppositeAngle.h \ + ./toolkits/petsc\ + ./toolkits/petsc/patches\ + ./toolkits/petsc/patches/SolverEnum.h\ + ./toolkits/petsc/patches/petscpatches.h\ + ./toolkits/petsc/patches/MatlabMatrixToPetscMatrix.cpp\ + ./toolkits/petsc/patches/MatlabVectorToPetscVector.cpp\ + ./toolkits/petsc/patches/PetscMatrixToMatlabMatrix.cpp\ + ./toolkits/petsc/patches/PetscVectorToMatlabVector.cpp\ + ./toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp\ + ./toolkits/petsc/patches/MatlabVectorToDoubleVector.cpp\ + ./toolkits/petsc/patches/PetscDetermineLocalSize.cpp\ + ./toolkits/petsc/patches/VecTranspose.cpp\ + ./toolkits/petsc/patches/VecToMPISerial.cpp\ + ./toolkits/petsc/patches/MatToSerial.cpp\ + ./toolkits/petsc/patches/VecMerge.cpp\ + ./toolkits/petsc/patches/NewVec.cpp\ + ./toolkits/petsc/patches/PetscOptionsDetermineSolverType.cpp\ + ./toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp\ + ./toolkits/petsc/patches/NewMat.cpp\ + ./toolkits/petsc/patches/SerialToVec.cpp\ + ./toolkits/petsc/patches/VecFree.cpp\ + ./toolkits/petsc/patches/VecDuplicatePatch.cpp\ + ./toolkits/petsc/patches/KSPFree.cpp\ + ./toolkits/petsc/patches/ISFree.cpp\ + ./toolkits/petsc/patches/MatFree.cpp\ + ./toolkits/petsc/patches/GetOwnershipBoundariesFromRange.cpp\ + ./toolkits/petsc/patches/VecPartition.cpp\ + ./toolkits/petsc/patches/MatPartition.cpp\ + ./toolkits/petsc/patches/MatInvert.cpp\ + ./toolkits/petsc/patches/MatMultPatch.cpp\ + ./toolkits/petsc/petscincludes.h\ + ./toolkits/mpi/mpiincludes.h\ + ./toolkits/mpi/patches/mpipatches.h\ + ./toolkits/mpi/patches/MPI_Upperrow.cpp\ + ./toolkits/mpi/patches/MPI_Lowerrow.cpp\ + ./toolkits/mpi/patches/MPI_Boundariesfromrange.cpp\ + ./toolkits/metis/metisincludes.h\ + ./toolkits/triangle/triangleincludes.h\ + ./toolkits/matlab/matlabincludes.h\ + ./toolkits/matlab/MatlabNArrayToNArray.cpp\ + ./toolkits.h\ + ./io/io.h\ + ./io/Disk/diskio.h\ + ./io/Disk/pfopen.cpp\ + ./io/Disk/pfclose.cpp\ + ./io/Matlab/matlabio.h\ + ./io/Matlab/WriteMatlabData.cpp\ + ./io/Matlab/FetchMatlabData.cpp\ + ./io/Matlab/OptionParse.cpp\ + ./EnumDefinitions/EnumDefinitions.h\ + ./EnumDefinitions/EnumToModelField.cpp\ + ./modules/AddExternalResultx/AddExternalResultx.h\ + ./modules/AddExternalResultx/AddExternalResultx.cpp\ + ./modules/Chacox/Chacox.h\ + ./modules/Chacox/Chacox.cpp\ + ./modules/Chacox/input_parse.cpp\ + ./modules/Chacox/chaco_seconds.cpp\ + ./modules/Chacox/user_params.cpp\ + ./modules/GroundingLineMigrationx/GroundingLineMigrationx.cpp\ + ./modules/GroundingLineMigrationx/GroundingLineMigrationx.h\ + ./modules/GroundingLineMigrationx/GroundingLineMigrationxLocal.h\ + ./modules/GroundingLineMigrationx/GroundingLineMigrationxUtils.cpp\ + ./modules/ModelProcessorx/ModelProcessorx.h\ + ./modules/ModelProcessorx/ModelProcessorx.cpp\ + ./modules/ModelProcessorx/DistributeNumDofs.cpp\ + ./modules/ModelProcessorx/ElementsAndVerticesPartitioning.cpp\ + ./modules/ModelProcessorx/NodesPartitioning.cpp\ + ./modules/ModelProcessorx/SortDataSets.cpp\ + ./modules/ModelProcessorx/UpdateCounters.cpp\ + ./modules/ModelProcessorx/CreateDataSets.cpp\ + ./modules/ModelProcessorx/CreateParameters.cpp\ + ./modules/ModelProcessorx/CreateSingleNodeToElementConnectivity.cpp\ + ./modules/ModelProcessorx/CreateNumberNodeToElementConnectivity.cpp\ + ./modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp\ + ./modules/ModelProcessorx/DiagnosticHoriz/UpdateElementsDiagnosticHoriz.cpp\ + ./modules/ModelProcessorx/DiagnosticHoriz/CreateNodesDiagnosticHoriz.cpp \ + ./modules/ModelProcessorx/DiagnosticHoriz/CreateConstraintsDiagnosticHoriz.cpp \ + ./modules/ModelProcessorx/DiagnosticHoriz/CreateLoadsDiagnosticHoriz.cpp\ + ./modules/ModelProcessorx/DiagnosticVert/UpdateElementsDiagnosticVert.cpp\ + ./modules/ModelProcessorx/DiagnosticVert/CreateNodesDiagnosticVert.cpp \ + ./modules/ModelProcessorx/DiagnosticVert/CreateConstraintsDiagnosticVert.cpp \ + ./modules/ModelProcessorx/DiagnosticVert/CreateLoadsDiagnosticVert.cpp\ + ./modules/ModelProcessorx/DiagnosticHutter/UpdateElementsDiagnosticHutter.cpp\ + ./modules/ModelProcessorx/DiagnosticHutter/CreateNodesDiagnosticHutter.cpp \ + ./modules/ModelProcessorx/DiagnosticHutter/CreateConstraintsDiagnosticHutter.cpp \ + ./modules/ModelProcessorx/DiagnosticHutter/CreateLoadsDiagnosticHutter.cpp\ + ./modules/ModelProcessorx/BedSlope/UpdateElementsBedSlope.cpp\ + ./modules/ModelProcessorx/BedSlope/CreateNodesBedSlope.cpp \ + ./modules/ModelProcessorx/BedSlope/CreateConstraintsBedSlope.cpp\ + ./modules/ModelProcessorx/BedSlope/CreateLoadsBedSlope.cpp\ + ./modules/ModelProcessorx/SurfaceSlope/UpdateElementsSurfaceSlope.cpp\ + ./modules/ModelProcessorx/SurfaceSlope/CreateNodesSurfaceSlope.cpp \ + ./modules/ModelProcessorx/SurfaceSlope/CreateConstraintsSurfaceSlope.cpp\ + ./modules/ModelProcessorx/SurfaceSlope/CreateLoadsSurfaceSlope.cpp\ + ./modules/ModelProcessorx/Control/CreateParametersControl.cpp\ + ./modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp\ + ./modules/ModelProcessorx/Thermal/UpdateElementsThermal.cpp\ + ./modules/ModelProcessorx/Thermal/CreateNodesThermal.cpp\ + ./modules/ModelProcessorx/Thermal/CreateConstraintsThermal.cpp\ + ./modules/ModelProcessorx/Thermal/CreateLoadsThermal.cpp\ + ./modules/ModelProcessorx/Enthalpy/UpdateElementsEnthalpy.cpp\ + ./modules/ModelProcessorx/Enthalpy/CreateNodesEnthalpy.cpp\ + ./modules/ModelProcessorx/Enthalpy/CreateConstraintsEnthalpy.cpp\ + ./modules/ModelProcessorx/Enthalpy/CreateLoadsEnthalpy.cpp\ + ./modules/ModelProcessorx/Hydrology/UpdateElementsHydrology.cpp\ + ./modules/ModelProcessorx/Hydrology/CreateNodesHydrology.cpp\ + ./modules/ModelProcessorx/Hydrology/CreateConstraintsHydrology.cpp\ + ./modules/ModelProcessorx/Hydrology/CreateLoadsHydrology.cpp\ + ./modules/ModelProcessorx/Melting/UpdateElementsMelting.cpp\ + ./modules/ModelProcessorx/Melting/CreateNodesMelting.cpp\ + ./modules/ModelProcessorx/Melting/CreateConstraintsMelting.cpp\ + ./modules/ModelProcessorx/Melting/CreateLoadsMelting.cpp\ + ./modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp\ + ./modules/ModelProcessorx/Prognostic/CreateNodesPrognostic.cpp\ + ./modules/ModelProcessorx/Prognostic/CreateConstraintsPrognostic.cpp\ + ./modules/ModelProcessorx/Prognostic/CreateLoadsPrognostic.cpp\ + ./modules/ModelProcessorx/Balancethickness/UpdateElementsBalancethickness.cpp\ + ./modules/ModelProcessorx/Balancethickness/CreateNodesBalancethickness.cpp\ + ./modules/ModelProcessorx/Balancethickness/CreateConstraintsBalancethickness.cpp\ + ./modules/ModelProcessorx/Balancethickness/CreateLoadsBalancethickness.cpp\ + ./modules/ModelProcessorx/Transient/UpdateElementsTransient.cpp\ + ./modules/ModelProcessorx/Qmu/CreateParametersQmu.cpp\ + ./modules/ParsePetscOptionsx/ParsePetscOptionsx.h\ + ./modules/ParsePetscOptionsx/ParsePetscOptionsx.cpp\ + ./modules/NodesDofx/NodesDofx.h\ + ./modules/NodesDofx/NodesDofx.cpp\ + ./modules/NodalValuex/NodalValuex.h\ + ./modules/NodalValuex/NodalValuex.cpp\ + ./modules/TriaSearchx/TriaSearchx.h\ + ./modules/TriaSearchx/TriaSearchx.cpp\ + ./modules/VerticesDofx/VerticesDofx.h\ + ./modules/VerticesDofx/VerticesDofx.cpp\ + ./modules/OutputResultsx/OutputResultsx.h\ + ./modules/OutputResultsx/OutputResultsx.cpp\ + ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.h\ + ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.cpp\ + ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsxt.cpp\ + ./modules/MinVelx/MinVelx.h\ + ./modules/MinVelx/MinVelx.cpp\ + ./modules/MaxVelx/MaxVelx.h\ + ./modules/MaxVelx/MaxVelx.cpp\ + ./modules/MaxAbsVxx/MaxAbsVxx.h\ + ./modules/MaxAbsVxx/MaxAbsVxx.cpp\ + ./modules/MaxAbsVyx/MaxAbsVyx.h\ + ./modules/MaxAbsVyx/MaxAbsVyx.cpp\ + ./modules/MaxAbsVzx/MaxAbsVzx.h\ + ./modules/MaxAbsVzx/MaxAbsVzx.cpp\ + ./modules/MaxVxx/MaxVxx.h\ + ./modules/MaxVxx/MaxVxx.cpp\ + ./modules/MaxVyx/MaxVyx.h\ + ./modules/MaxVyx/MaxVyx.cpp\ + ./modules/MaxVzx/MaxVzx.h\ + ./modules/MaxVzx/MaxVzx.cpp\ + ./modules/MinVxx/MinVxx.h\ + ./modules/MinVxx/MinVxx.cpp\ + ./modules/MinVyx/MinVyx.h\ + ./modules/MinVyx/MinVyx.cpp\ + ./modules/MinVzx/MinVzx.h\ + ./modules/MinVzx/MinVzx.cpp\ + ./modules/KMLMeshWritex/KMLFileReadx.h\ + ./modules/KMLMeshWritex/KMLFileReadx.cpp\ + ./modules/KMLMeshWritex/KMLMeshWritex.h\ + ./modules/KMLMeshWritex/KMLMeshWritex.cpp\ + ./modules/KMLOverlayx/KMLOverlayx.h\ + ./modules/KMLOverlayx/KMLOverlayx.cpp\ + ./modules/Xy2llx/Xy2llx.h\ + ./modules/Xy2llx/Xy2llx.cpp\ + ./modules/Ll2xyx/Ll2xyx.h\ + ./modules/Ll2xyx/Ll2xyx.cpp\ + ./modules/Exp2Kmlx/Exp2Kmlx.cpp\ + ./modules/Exp2Kmlx/Exp2Kmlx.cpp\ + ./modules/Kml2Expx/Kml2Expx.cpp\ + ./modules/Kml2Expx/Kml2Expx.cpp\ + ./modules/InputDuplicatex/InputDuplicatex.h\ + ./modules/InputDuplicatex/InputDuplicatex.cpp\ + ./modules/InputScalex/InputScalex.h\ + ./modules/InputScalex/InputScalex.cpp\ + ./modules/InputControlUpdatex/InputControlUpdatex.h\ + ./modules/InputControlUpdatex/InputControlUpdatex.cpp\ + ./modules/SurfaceAreax/SurfaceAreax.h\ + ./modules/SurfaceAreax/SurfaceAreax.cpp\ + ./modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.h\ + ./modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp\ + ./modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.h\ + ./modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp\ + ./modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.h\ + ./modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp\ + ./modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.h\ + ./modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp\ + ./modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.h\ + ./modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp\ + ./modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.h\ + ./modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp\ + ./modules/CostFunctionx/CostFunctionx.h\ + ./modules/CostFunctionx/CostFunctionx.cpp\ + ./modules/CreateNodalConstraintsx/CreateNodalConstraintsx.h\ + ./modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp\ + ./modules/Orthx/Orthx.h\ + ./modules/Orthx/Orthx.cpp\ + ./modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.h\ + ./modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp\ + ./modules/Gradjx/Gradjx.h\ + ./modules/Gradjx/Gradjx.cpp\ + ./modules/IoModelToConstraintsx/IoModelToConstraintsx.h\ + ./modules/IoModelToConstraintsx/IoModelToConstraintsx.cpp\ + ./modules/InputUpdateFromConstantx/InputUpdateFromConstantx.h\ + ./modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp\ + ./modules/InputUpdateFromDakotax/InputUpdateFromDakotax.h\ + ./modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp\ + ./modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h\ + ./modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp\ + ./modules/DakotaResponsesx/DakotaResponsesx.h\ + ./modules/DakotaResponsesx/DakotaResponsesx.cpp\ + ./modules/GetSolutionFromInputsx/GetSolutionFromInputsx.h\ + ./modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp\ + ./modules/GetVectorFromInputsx/GetVectorFromInputsx.h\ + ./modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp\ + ./modules/InputUpdateFromVectorx/InputUpdateFromVectorx.h\ + ./modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp\ + ./modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.h\ + ./modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp\ + ./modules/InputArtificialNoisex/InputArtificialNoisex.h\ + ./modules/InputArtificialNoisex/InputArtificialNoisex.cpp\ + ./modules/TimeAdaptx/TimeAdaptx.h\ + ./modules/TimeAdaptx/TimeAdaptx.cpp\ + ./modules/UpdateVertexPositionsx/UpdateVertexPositionsx.h\ + ./modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp\ + ./modules/ConfigureObjectsx/ConfigureObjectsx.h\ + ./modules/ConfigureObjectsx/ConfigureObjectsx.cpp\ + ./modules/ComputeBasalStressx/ComputeBasalStressx.h\ + ./modules/ComputeBasalStressx/ComputeBasalStressx.cpp\ + ./modules/ComputeStrainRatex/ComputeStrainRatex.h\ + ./modules/ComputeStrainRatex/ComputeStrainRatex.cpp\ + ./modules/SpcNodesx/SpcNodesx.h\ + ./modules/SpcNodesx/SpcNodesx.cpp\ + ./modules/UpdateConstraintsx/UpdateConstraintsx.h\ + ./modules/UpdateConstraintsx/UpdateConstraintsx.cpp\ + ./modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp\ + ./modules/InterpFromGridToMeshx/InterpFromGridToMeshx.h\ + ./modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp\ + ./modules/InterpFromMesh2dx/InterpFromMesh2dxt.cpp\ + ./modules/InterpFromMesh2dx/InterpFromMesh2dx.h\ + ./modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp\ + ./modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.h\ + ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp\ + ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h\ + ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.cpp\ + ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.h\ + ./modules/HoleFillerx/HoleFillerx.cpp\ + ./modules/HoleFillerx/HoleFillerx.h\ + ./modules/AverageFilterx/AverageFilterx.cpp\ + ./modules/AverageFilterx/AverageFilterx.h\ + ./modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp\ + ./modules/AverageOntoPartitionx/AverageOntoPartitionx.h\ + ./modules/MeshPartitionx/MeshPartitionx.cpp\ + ./modules/MeshPartitionx/MeshPartitionx.h\ + ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.cpp\ + ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.h\ + ./modules/MeshProfileIntersectionx/MeshSegmentsIntersection.cpp\ + ./modules/MeshProfileIntersectionx/ElementSegmentsIntersection.cpp\ + ./modules/MeshProfileIntersectionx/ElementSegment.cpp\ + ./modules/MeshProfileIntersectionx/SegmentIntersect.cpp\ + ./modules/MeshProfileIntersectionx/NodeInElement.cpp\ + ./modules/ContourToMeshx/ContourToMeshx.cpp\ + ./modules/ContourToMeshx/ContourToMeshxt.cpp\ + ./modules/ContourToMeshx/ContourToMeshx.h\ + ./modules/ContourToNodesx/ContourToNodesx.cpp\ + ./modules/ContourToNodesx/ContourToNodesx.h\ + ./modules/Reducevectorgtosx/Reducevectorgtosx.cpp\ + ./modules/Reducevectorgtosx/Reducevectorgtosx.h\ + ./modules/Reducevectorgtofx/Reducevectorgtofx.cpp\ + ./modules/Reducevectorgtofx/Reducevectorgtofx.h\ + ./modules/Reduceloadx/Reduceloadx.h\ + ./modules/Reduceloadx/Reduceloadx.cpp\ + ./modules/NodeConnectivityx/NodeConnectivityx.cpp\ + ./modules/NodeConnectivityx/NodeConnectivityx.h\ + ./modules/ElementConnectivityx/ElementConnectivityx.cpp\ + ./modules/ElementConnectivityx/ElementConnectivityx.h\ + ./modules/EnumToStringx/EnumToStringx.cpp\ + ./modules/EnumToStringx/EnumToStringx.h\ + ./modules/StringToEnumx/StringToEnumx.cpp\ + ./modules/StringToEnumx/StringToEnumx.h\ + ./modules/MassFluxx/MassFluxx.cpp\ + ./modules/MassFluxx/MassFluxx.h\ + ./modules/ControlInputGetGradientx/ControlInputGetGradientx.cpp\ + ./modules/ControlInputGetGradientx/ControlInputGetGradientx.h\ + ./modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp\ + ./modules/ControlInputSetGradientx/ControlInputSetGradientx.h\ + ./modules/ControlInputScaleGradientx/ControlInputScaleGradientx.cpp\ + ./modules/ControlInputScaleGradientx/ControlInputScaleGradientx.h\ + ./modules/SystemMatricesx/SystemMatricesx.cpp\ + ./modules/SystemMatricesx/SystemMatricesx.h\ + ./modules/ConstraintsStatex/ConstraintsStatex.cpp\ + ./modules/ConstraintsStatex/ConstraintsStatex.h\ + ./modules/ConstraintsStatex/ConstraintsStateLocal.h\ + ./modules/ConstraintsStatex/RiftConstraintsState.cpp\ + ./modules/ConstraintsStatex/ThermalConstraintsState.cpp\ + ./modules/ConstraintsStatex/ThermalIsPresent.cpp\ + ./modules/Responsex/Responsex.h\ + ./modules/Responsex/Responsex.cpp\ + ./modules/RequestedOutputsx/RequestedOutputsx.h\ + ./modules/RequestedOutputsx/RequestedOutputsx.cpp\ + ./modules/ResetConstraintsx/ResetConstraintsx.h\ + ./modules/ResetConstraintsx/ResetConstraintsx.cpp\ + ./modules/ResetConstraintsx/ThermalConstraintsReset.cpp\ + ./modules/Scotchx/Scotchx.cpp\ + ./modules/Scotchx/Scotchx.h\ + ./modules/Solverx/Solverx.cpp\ + ./modules/Solverx/Solverx.h\ + ./modules/VecMergex/VecMergex.cpp\ + ./modules/VecMergex/VecMergex.h\ + ./modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp\ + ./modules/Mergesolutionfromftogx/Mergesolutionfromftogx.h\ + ./modules/PropagateFlagsFromConnectivityx/PropagateFlagsFromConnectivityx.cpp\ + ./modules/PropagateFlagsFromConnectivityx/PropagateFlagsFromConnectivityx.h\ + ./modules/Dakotax/Dakotax.h\ + ./modules/Dakotax/Dakotax.cpp\ + ./modules/Dakotax/SpawnCore.cpp\ + ./modules/Dakotax/SpawnCoreSerial.cpp\ + ./modules/InputToResultx/InputToResultx.cpp\ + ./modules/InputToResultx/InputToResultx.h\ + ./modules/InputConvergencex/InputConvergencex.cpp\ + ./modules/InputConvergencex/InputConvergencex.h\ + ./modules/OutputRiftsx/OutputRiftsx.h\ + ./modules/OutputRiftsx/OutputRiftsx.cpp\ + ./modules/Bamgx/Bamgx.cpp\ + ./modules/Bamgx/Bamgx.h\ + ./modules/BamgConvertMeshx/BamgConvertMeshx.cpp\ + ./modules/BamgConvertMeshx/BamgConvertMeshx.h\ + ./modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp\ + ./modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.h\ + ./modules/ThicknessAbsGradientx/ThicknessAbsGradientx.cpp\ + ./modules/ThicknessAbsGradientx/ThicknessAbsGradientx.h\ + ./modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp\ + ./modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.h\ + ./modules/RheologyBbarx/RheologyBbarx.cpp\ + ./modules/RheologyBbarx/RheologyBbarx.h + + +libISSM_a_CXXFLAGS = -fPIC -DMATLAB -D_SERIAL_ -ansi -D_GNU_SOURCE -fno-omit-frame-pointer -pthread -D_CPP_ $(CXXOPTFLAGS) +if LARGEARRAYS +libISSM_a_CXXFLAGS += -D__GCC4BUILD__ +else +libISSM_a_CXXFLAGS += -DMX_COMPAT_32 +endif + +#Parallel compilation +libpISSM_a_SOURCES = ./include/macros.h\ + ./include/typedefs.h\ + ./include/types.h\ + ./include/globals.h\ + ./include/include.h\ + ./objects/objects.h\ + ./objects/Object.h\ + ./objects/Bamg/BamgGeom.h\ + ./objects/Bamg/BamgGeom.cpp\ + ./objects/Bamg/BamgMesh.h\ + ./objects/Bamg/BamgMesh.cpp\ + ./objects/Bamg/BamgOpts.h\ + ./objects/Bamg/BamgOpts.cpp\ + ./objects/Bamg/BamgObjects.h \ + ./objects/Bamg/CrackedEdge.h\ + ./objects/Bamg/CrackedEdge.cpp\ + ./objects/Bamg/Curve.h\ + ./objects/Bamg/Curve.cpp\ + ./objects/Bamg/Direction.h\ + ./objects/Bamg/Direction.cpp\ + ./objects/Bamg/DoubleAndInt.h\ + ./objects/Bamg/Edge.h\ + ./objects/Bamg/Edge.cpp\ + ./objects/Bamg/GeomEdge.h\ + ./objects/Bamg/GeomEdge.cpp\ + ./objects/Bamg/GeomSubDomain.h\ + ./objects/Bamg/GeomSubDomain.cpp\ + ./objects/Bamg/GeomVertex.h\ + ./objects/Bamg/GeomVertex.cpp\ + ./objects/Bamg/Geometry.h\ + ./objects/Bamg/Geometry.cpp\ + ./objects/Bamg/ListofIntersectionTriangles.cpp\ + ./objects/Bamg/ListofIntersectionTriangles.h\ + ./objects/Bamg/EigenMetric.cpp\ + ./objects/Bamg/Metric.cpp\ + ./objects/Bamg/Metric.h\ + ./objects/Bamg/QuadTree.cpp\ + ./objects/Bamg/QuadTree.h\ + ./objects/Bamg/R2.h\ + ./objects/Bamg/SetOfE4.cpp\ + ./objects/Bamg/SetOfE4.h\ + ./objects/Bamg/SubDomain.h\ + ./objects/Bamg/SubDomain.cpp\ + ./objects/Bamg/AdjacentTriangle.h\ + ./objects/Bamg/AdjacentTriangle.cpp\ + ./objects/Bamg/Triangle.cpp\ + ./objects/Bamg/Triangle.h\ + ./objects/Bamg/BamgVertex.cpp\ + ./objects/Bamg/BamgVertex.h\ + ./objects/Bamg/VertexOnEdge.h\ + ./objects/Bamg/VertexOnEdge.cpp\ + ./objects/Bamg/VertexOnGeom.h\ + ./objects/Bamg/VertexOnGeom.cpp\ + ./objects/Bamg/VertexOnVertex.h\ + ./objects/Bamg/VertexOnVertex.cpp\ + ./objects/Bamg/Mesh.h\ + ./objects/Bamg/Mesh.cpp\ + ./objects/Gauss/GaussTria.h\ + ./objects/Gauss/GaussTria.cpp\ + ./objects/Gauss/GaussPenta.h\ + ./objects/Gauss/GaussPenta.cpp\ + ./objects/KML/KML_Attribute.cpp\ + ./objects/KML/KML_Attribute.h\ + ./objects/KML/KML_ColorStyle.cpp\ + ./objects/KML/KML_ColorStyle.h\ + ./objects/KML/KML_Container.cpp\ + ./objects/KML/KML_Container.h\ + ./objects/KML/KML_Document.cpp\ + ./objects/KML/KML_Document.h\ + ./objects/KML/KML_Feature.cpp\ + ./objects/KML/KML_Feature.h\ + ./objects/KML/KML_File.cpp\ + ./objects/KML/KML_File.h\ + ./objects/KML/KML_Folder.cpp\ + ./objects/KML/KML_Folder.h\ + ./objects/KML/KML_Geometry.cpp\ + ./objects/KML/KML_Geometry.h\ + ./objects/KML/KML_GroundOverlay.cpp\ + ./objects/KML/KML_GroundOverlay.h\ + ./objects/KML/KML_Icon.cpp\ + ./objects/KML/KML_Icon.h\ + ./objects/KML/KML_LatLonBox.cpp\ + ./objects/KML/KML_LatLonBox.h\ + ./objects/KML/KML_LinearRing.cpp\ + ./objects/KML/KML_LinearRing.h\ + ./objects/KML/KML_LineString.cpp\ + ./objects/KML/KML_LineString.h\ + ./objects/KML/KML_LineStyle.cpp\ + ./objects/KML/KML_LineStyle.h\ + ./objects/KML/KML_MultiGeometry.cpp\ + ./objects/KML/KML_MultiGeometry.h\ + ./objects/KML/KML_Object.cpp\ + ./objects/KML/KML_Object.h\ + ./objects/KML/KML_Overlay.cpp\ + ./objects/KML/KML_Overlay.h\ + ./objects/KML/KML_Placemark.cpp\ + ./objects/KML/KML_Placemark.h\ + ./objects/KML/KML_Polygon.cpp\ + ./objects/KML/KML_Polygon.h\ + ./objects/KML/KML_PolyStyle.cpp\ + ./objects/KML/KML_PolyStyle.h\ + ./objects/KML/KML_Style.cpp\ + ./objects/KML/KML_Style.h\ + ./objects/KML/KML_StyleSelector.cpp\ + ./objects/KML/KML_StyleSelector.h\ + ./objects/KML/KML_SubStyle.cpp\ + ./objects/KML/KML_SubStyle.h\ + ./objects/KML/KMLFileReadUtils.cpp\ + ./objects/KML/KMLFileReadUtils.h\ + ./objects/Options/Option.cpp\ + ./objects/Options/Option.h\ + ./objects/Options/OptionDouble.cpp\ + ./objects/Options/OptionDouble.h\ + ./objects/Options/OptionLogical.cpp\ + ./objects/Options/OptionLogical.h\ + ./objects/Options/OptionChar.cpp\ + ./objects/Options/OptionChar.h\ + ./objects/Options/OptionStruct.cpp\ + ./objects/Options/OptionStruct.h\ + ./objects/Options/OptionCell.cpp\ + ./objects/Options/OptionCell.h\ + ./objects/Options/OptionUtilities.cpp\ + ./objects/Options/OptionUtilities.h\ + ./objects/Update.h\ + ./objects/Element.h\ + ./objects/FemModel.h\ + ./objects/FemModel.cpp\ + ./objects/Material.h\ + ./objects/Load.h\ + ./objects/Contour.h\ + ./objects/Contour.cpp\ + ./objects/OptArgs.h\ + ./objects/OptPars.h\ + ./objects/Loads/Friction.h\ + ./objects/Loads/Friction.cpp\ + ./objects/DakotaPlugin.h\ + ./objects/DakotaPlugin.cpp\ + ./objects/DofIndexing.h\ + ./objects/DofIndexing.cpp\ + ./objects/IoModel.h\ + ./objects/IoModel.cpp\ + ./objects/Node.h\ + ./objects/Node.cpp\ + ./objects/Segment.h\ + ./objects/Segment.cpp\ + ./objects/Vertex.h\ + ./objects/Vertex.cpp\ + ./objects/Hook.h\ + ./objects/Hook.cpp\ + ./objects/Patch.h\ + ./objects/Patch.cpp\ + ./objects/ElementResults/ElementResultLocal.h\ + ./objects/ElementResults/DoubleElementResult.h\ + ./objects/ElementResults/DoubleElementResult.cpp\ + ./objects/ElementResults/TriaVertexElementResult.h\ + ./objects/ElementResults/TriaVertexElementResult.cpp\ + ./objects/ElementResults/PentaVertexElementResult.h\ + ./objects/ElementResults/PentaVertexElementResult.cpp\ + ./objects/ElementResults/BoolElementResult.h\ + ./objects/ElementResults/BoolElementResult.cpp\ + ./objects/ExternalResults/ExternalResult.h\ + ./objects/ExternalResults/BoolExternalResult.h\ + ./objects/ExternalResults/BoolExternalResult.cpp\ + ./objects/ExternalResults/DoubleExternalResult.h\ + ./objects/ExternalResults/DoubleExternalResult.cpp\ + ./objects/ExternalResults/DoubleVecExternalResult.h\ + ./objects/ExternalResults/DoubleVecExternalResult.cpp\ + ./objects/ExternalResults/DoubleMatExternalResult.h\ + ./objects/ExternalResults/DoubleMatExternalResult.cpp\ + ./objects/ExternalResults/IntExternalResult.h\ + ./objects/ExternalResults/IntExternalResult.cpp\ + ./objects/ExternalResults/StringExternalResult.h\ + ./objects/ExternalResults/StringExternalResult.cpp\ + ./objects/ExternalResults/PetscVecExternalResult.h\ + ./objects/ExternalResults/PetscVecExternalResult.cpp\ + ./objects/Elements/Tria.h\ + ./objects/Elements/Tria.cpp\ + ./objects/Elements/TriaHook.h\ + ./objects/Elements/TriaHook.cpp\ + ./objects/Elements/TriaRef.h\ + ./objects/Elements/TriaRef.cpp\ + ./objects/Inputs/Input.h\ + ./objects/Inputs/InputLocal.h\ + ./objects/Inputs/TriaVertexInput.h\ + ./objects/Inputs/TriaVertexInput.cpp\ + ./objects/Inputs/PentaVertexInput.h\ + ./objects/Inputs/PentaVertexInput.cpp\ + ./objects/Inputs/BoolInput.h\ + ./objects/Inputs/BoolInput.cpp\ + ./objects/Inputs/IntInput.h\ + ./objects/Inputs/IntInput.cpp\ + ./objects/Inputs/DoubleInput.h\ + ./objects/Inputs/DoubleInput.cpp\ + ./objects/Inputs/ControlInput.h\ + ./objects/Inputs/ControlInput.cpp\ + ./objects/Inputs/DatasetInput.h\ + ./objects/Inputs/DatasetInput.cpp\ + ./objects/Inputs/TransientInput.h\ + ./objects/Inputs/TransientInput.cpp\ + ./objects/Elements/Penta.h\ + ./objects/Elements/Penta.cpp\ + ./objects/Elements/PentaHook.h\ + ./objects/Elements/PentaHook.cpp\ + ./objects/Elements/PentaRef.h\ + ./objects/Elements/PentaRef.cpp\ + ./objects/Materials/Matice.h\ + ./objects/Materials/Matice.cpp\ + ./objects/Materials/Matpar.h\ + ./objects/Materials/Matpar.cpp\ + ./objects/Constraints/Constraint.h\ + ./objects/Constraints/SpcStatic.cpp\ + ./objects/Constraints/SpcStatic.h\ + ./objects/Constraints/SpcDynamic.cpp\ + ./objects/Constraints/SpcDynamic.h\ + ./objects/Constraints/SpcTransient.cpp\ + ./objects/Constraints/SpcTransient.h\ + ./objects/Loads/Penpair.cpp\ + ./objects/Loads/Penpair.h\ + ./objects/Loads/Pengrid.cpp\ + ./objects/Loads/Pengrid.h\ + ./objects/Loads/Icefront.cpp\ + ./objects/Loads/Icefront.h\ + ./objects/Loads/Riftfront.cpp\ + ./objects/Loads/Riftfront.h\ + ./objects/Loads/Numericalflux.cpp\ + ./objects/Loads/Numericalflux.h\ + ./objects/Numerics/ElementMatrix.h\ + ./objects/Numerics/ElementMatrix.cpp\ + ./objects/Numerics/ElementVector.h\ + ./objects/Numerics/ElementVector.cpp\ + ./objects/Params/Param.h\ + ./objects/Params/BoolParam.cpp\ + ./objects/Params/BoolParam.h\ + ./objects/Params/IntParam.cpp\ + ./objects/Params/IntParam.h\ + ./objects/Params/IntVecParam.cpp\ + ./objects/Params/IntVecParam.h\ + ./objects/Params/IntMatParam.cpp\ + ./objects/Params/IntMatParam.h\ + ./objects/Params/DoubleParam.cpp\ + ./objects/Params/DoubleParam.h\ + ./objects/Params/FileParam.cpp\ + ./objects/Params/FileParam.h\ + ./objects/Params/PetscMatParam.cpp\ + ./objects/Params/PetscMatParam.h\ + ./objects/Params/StringArrayParam.cpp\ + ./objects/Params/StringArrayParam.h\ + ./objects/Params/DoubleMatParam.cpp\ + ./objects/Params/DoubleMatParam.h\ + ./objects/Params/DoubleMatArrayParam.cpp\ + ./objects/Params/DoubleMatArrayParam.h\ + ./objects/Params/DoubleVecParam.cpp\ + ./objects/Params/DoubleVecParam.h\ + ./objects/Params/PetscVecParam.cpp\ + ./objects/Params/PetscVecParam.h\ + ./objects/Params/StringParam.cpp\ + ./objects/Params/StringParam.h\ + ./Container/Container.h\ + ./Container/Constraints.h\ + ./Container/Constraints.cpp\ + ./Container/DataSet.h\ + ./Container/DataSet.cpp\ + ./Container/Elements.h\ + ./Container/Elements.cpp\ + ./Container/Inputs.h\ + ./Container/Inputs.cpp\ + ./Container/Loads.h\ + ./Container/Loads.cpp\ + ./Container/Materials.h\ + ./Container/Materials.cpp\ + ./Container/Nodes.h\ + ./Container/Nodes.cpp\ + ./Container/Options.h\ + ./Container/Options.cpp\ + ./Container/Parameters.h\ + ./Container/Parameters.cpp\ + ./Container/Results.h\ + ./Container/Results.cpp\ + ./Container/Vertices.h\ + ./Container/Vertices.cpp\ + ./shared/shared.h\ + ./shared/Threads/issm_threads.h\ + ./shared/Threads/LaunchThread.cpp\ + ./shared/Threads/PartitionRange.cpp\ + ./shared/Alloc/alloc.h\ + ./shared/Alloc/alloc.cpp\ + ./shared/Matlab/matlabshared.h\ + ./shared/Matlab/PrintfFunction.cpp\ + ./shared/Matlab/ModuleBoot.cpp\ + ./shared/Matlab/mxGetAssignedField.cpp\ + ./shared/Matlab/mxGetField.cpp\ + ./shared/Matlab/CheckNumMatlabArguments.cpp\ + ./shared/Matrix/matrix.h\ + ./shared/Matrix/MatrixUtils.cpp\ + ./shared/Dofs/dofs.h\ + ./shared/Dofs/dofsetgen.cpp\ + ./shared/Numerics/numerics.h\ + ./shared/Numerics/Verbosity.h\ + ./shared/Numerics/Verbosity.cpp\ + ./shared/Numerics/IsInputConverged.cpp\ + ./shared/Numerics/GaussPoints.h\ + ./shared/Numerics/GaussPoints.cpp\ + ./shared/Numerics/cross.cpp\ + ./shared/Numerics/norm.cpp\ + ./shared/Numerics/BrentSearch.cpp\ + ./shared/Numerics/OptimalSearch.cpp\ + ./shared/Numerics/OptFunc.cpp\ + ./shared/Numerics/extrema.cpp\ + ./shared/Numerics/UnitConversion.cpp\ + ./shared/Numerics/PetscOptionsFromAnalysis.cpp\ + ./shared/Exceptions/exceptions.h\ + ./shared/Exceptions/Exceptions.cpp\ + ./shared/Exceptions/exprintf.cpp\ + ./shared/Exp/exp.h\ + ./shared/Exp/IsInPoly.cpp\ + ./shared/Exp/IsInPolySerial.cpp\ + ./shared/Exp/DomainOutlineRead.cpp\ + ./shared/Exp/DomainOutlineWrite.cpp\ + ./shared/TriMesh/trimesh.h\ + ./shared/TriMesh/AssociateSegmentToElement.cpp\ + ./shared/TriMesh/GridInsideHole.cpp\ + ./shared/TriMesh/OrderSegments.cpp\ + ./shared/TriMesh/SplitMeshForRifts.cpp\ + ./shared/TriMesh/TriMeshUtils.cpp\ + ./shared/Sorting/binary_search.cpp\ + ./shared/Sorting/sorting.h\ + ./shared/Elements/elements.h\ + ./shared/Elements/Paterson.cpp\ + ./shared/Elements/Arrhenius.cpp\ + ./shared/Elements/GetVerticesCoordinates.cpp\ + ./shared/Elements/GetLocalDofList.cpp\ + ./shared/Elements/GetGlobalDofList.cpp\ + ./shared/Elements/GetNumberOfDofs.cpp\ + ./shared/String/DescriptorIndex.cpp\ + ./shared/String/sharedstring.h\ + ./shared/Bamg/Abs.h \ + ./shared/Bamg/BigPrimeNumber.h\ + ./shared/Bamg/BigPrimeNumber.cpp\ + ./shared/Bamg/BinaryRand.h \ + ./shared/Bamg/det.h \ + ./shared/Bamg/Exchange.h \ + ./shared/Bamg/extrema.h \ + ./shared/Bamg/HeapSort.h \ + ./shared/Bamg/OppositeAngle.h \ + ./toolkits/petsc\ + ./toolkits/petsc/patches\ + ./toolkits/petsc/patches/SolverEnum.h\ + ./toolkits/petsc/patches/petscpatches.h\ + ./toolkits/petsc/patches/MatlabMatrixToPetscMatrix.cpp\ + ./toolkits/petsc/patches/MatlabVectorToPetscVector.cpp\ + ./toolkits/petsc/patches/PetscMatrixToMatlabMatrix.cpp\ + ./toolkits/petsc/patches/PetscVectorToMatlabVector.cpp\ + ./toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp\ + ./toolkits/petsc/patches/MatlabVectorToDoubleVector.cpp\ + ./toolkits/petsc/patches/PetscDetermineLocalSize.cpp\ + ./toolkits/petsc/patches/VecTranspose.cpp\ + ./toolkits/petsc/patches/VecToMPISerial.cpp\ + ./toolkits/petsc/patches/MatToSerial.cpp\ + ./toolkits/petsc/patches/VecMerge.cpp\ + ./toolkits/petsc/patches/NewVec.cpp\ + ./toolkits/petsc/patches/PetscOptionsDetermineSolverType.cpp\ + ./toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp\ + ./toolkits/petsc/patches/NewMat.cpp\ + ./toolkits/petsc/patches/SerialToVec.cpp\ + ./toolkits/petsc/patches/VecFree.cpp\ + ./toolkits/petsc/patches/VecDuplicatePatch.cpp\ + ./toolkits/petsc/patches/KSPFree.cpp\ + ./toolkits/petsc/patches/ISFree.cpp\ + ./toolkits/petsc/patches/MatFree.cpp\ + ./toolkits/petsc/patches/GetOwnershipBoundariesFromRange.cpp\ + ./toolkits/petsc/patches/VecPartition.cpp\ + ./toolkits/petsc/patches/MatPartition.cpp\ + ./toolkits/petsc/patches/MatInvert.cpp\ + ./toolkits/petsc/patches/MatMultPatch.cpp\ + ./toolkits/petsc/petscincludes.h\ + ./toolkits/mpi/mpiincludes.h\ + ./toolkits/mpi/patches/mpipatches.h\ + ./toolkits/mpi/patches/MPI_Upperrow.cpp\ + ./toolkits/mpi/patches/MPI_Lowerrow.cpp\ + ./toolkits/mpi/patches/MPI_Boundariesfromrange.cpp\ + ./toolkits/metis/metisincludes.h\ + ./toolkits/triangle/triangleincludes.h\ + ./toolkits.h\ + ./io/io.h\ + ./io/Disk/diskio.h\ + ./io/Disk/pfopen.cpp\ + ./io/Disk/pfclose.cpp\ + ./io/Matlab/matlabio.h\ + ./io/Matlab/WriteMatlabData.cpp\ + ./io/Matlab/FetchMatlabData.cpp\ + ./io/Matlab/OptionParse.cpp\ + ./EnumDefinitions/EnumDefinitions.h\ + ./EnumDefinitions/EnumToModelField.cpp\ + ./modules/AddExternalResultx/AddExternalResultx.h\ + ./modules/AddExternalResultx/AddExternalResultx.cpp\ + ./modules/Chacox/Chacox.h\ + ./modules/Chacox/Chacox.cpp\ + ./modules/Chacox/input_parse.cpp\ + ./modules/Chacox/chaco_seconds.cpp\ + ./modules/Chacox/user_params.cpp\ + ./modules/GroundingLineMigrationx/GroundingLineMigrationx.cpp\ + ./modules/GroundingLineMigrationx/GroundingLineMigrationx.h\ + ./modules/GroundingLineMigrationx/GroundingLineMigrationxLocal.h\ + ./modules/GroundingLineMigrationx/GroundingLineMigrationxUtils.cpp\ + ./modules/ModelProcessorx/ModelProcessorx.h\ + ./modules/ModelProcessorx/ModelProcessorx.cpp\ + ./modules/ModelProcessorx/DistributeNumDofs.cpp\ + ./modules/ModelProcessorx/ElementsAndVerticesPartitioning.cpp\ + ./modules/ModelProcessorx/NodesPartitioning.cpp\ + ./modules/ModelProcessorx/SortDataSets.cpp\ + ./modules/ModelProcessorx/UpdateCounters.cpp\ + ./modules/ModelProcessorx/CreateDataSets.cpp\ + ./modules/ModelProcessorx/CreateParameters.cpp\ + ./modules/ModelProcessorx/CreateSingleNodeToElementConnectivity.cpp\ + ./modules/ModelProcessorx/CreateNumberNodeToElementConnectivity.cpp\ + ./modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp\ + ./modules/ModelProcessorx/DiagnosticHoriz/UpdateElementsDiagnosticHoriz.cpp\ + ./modules/ModelProcessorx/DiagnosticHoriz/CreateNodesDiagnosticHoriz.cpp \ + ./modules/ModelProcessorx/DiagnosticHoriz/CreateConstraintsDiagnosticHoriz.cpp \ + ./modules/ModelProcessorx/DiagnosticHoriz/CreateLoadsDiagnosticHoriz.cpp\ + ./modules/ModelProcessorx/DiagnosticVert/UpdateElementsDiagnosticVert.cpp\ + ./modules/ModelProcessorx/DiagnosticVert/CreateNodesDiagnosticVert.cpp \ + ./modules/ModelProcessorx/DiagnosticVert/CreateConstraintsDiagnosticVert.cpp \ + ./modules/ModelProcessorx/DiagnosticVert/CreateLoadsDiagnosticVert.cpp\ + ./modules/ModelProcessorx/DiagnosticHutter/UpdateElementsDiagnosticHutter.cpp\ + ./modules/ModelProcessorx/DiagnosticHutter/CreateNodesDiagnosticHutter.cpp \ + ./modules/ModelProcessorx/DiagnosticHutter/CreateConstraintsDiagnosticHutter.cpp \ + ./modules/ModelProcessorx/DiagnosticHutter/CreateLoadsDiagnosticHutter.cpp\ + ./modules/ModelProcessorx/BedSlope/UpdateElementsBedSlope.cpp\ + ./modules/ModelProcessorx/BedSlope/CreateNodesBedSlope.cpp \ + ./modules/ModelProcessorx/BedSlope/CreateConstraintsBedSlope.cpp\ + ./modules/ModelProcessorx/BedSlope/CreateLoadsBedSlope.cpp\ + ./modules/ModelProcessorx/SurfaceSlope/UpdateElementsSurfaceSlope.cpp\ + ./modules/ModelProcessorx/SurfaceSlope/CreateNodesSurfaceSlope.cpp \ + ./modules/ModelProcessorx/SurfaceSlope/CreateConstraintsSurfaceSlope.cpp\ + ./modules/ModelProcessorx/SurfaceSlope/CreateLoadsSurfaceSlope.cpp\ + ./modules/ModelProcessorx/Control/CreateParametersControl.cpp\ + ./modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp\ + ./modules/ModelProcessorx/Thermal/UpdateElementsThermal.cpp\ + ./modules/ModelProcessorx/Thermal/CreateNodesThermal.cpp\ + ./modules/ModelProcessorx/Thermal/CreateConstraintsThermal.cpp\ + ./modules/ModelProcessorx/Thermal/CreateLoadsThermal.cpp\ + ./modules/ModelProcessorx/Enthalpy/UpdateElementsEnthalpy.cpp\ + ./modules/ModelProcessorx/Enthalpy/CreateNodesEnthalpy.cpp\ + ./modules/ModelProcessorx/Enthalpy/CreateConstraintsEnthalpy.cpp\ + ./modules/ModelProcessorx/Enthalpy/CreateLoadsEnthalpy.cpp\ + ./modules/ModelProcessorx/Hydrology/UpdateElementsHydrology.cpp\ + ./modules/ModelProcessorx/Hydrology/CreateNodesHydrology.cpp\ + ./modules/ModelProcessorx/Hydrology/CreateConstraintsHydrology.cpp\ + ./modules/ModelProcessorx/Hydrology/CreateLoadsHydrology.cpp\ + ./modules/ModelProcessorx/Melting/UpdateElementsMelting.cpp\ + ./modules/ModelProcessorx/Melting/CreateNodesMelting.cpp\ + ./modules/ModelProcessorx/Melting/CreateConstraintsMelting.cpp\ + ./modules/ModelProcessorx/Melting/CreateLoadsMelting.cpp\ + ./modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp\ + ./modules/ModelProcessorx/Prognostic/CreateNodesPrognostic.cpp\ + ./modules/ModelProcessorx/Prognostic/CreateConstraintsPrognostic.cpp\ + ./modules/ModelProcessorx/Prognostic/CreateLoadsPrognostic.cpp\ + ./modules/ModelProcessorx/Balancethickness/UpdateElementsBalancethickness.cpp\ + ./modules/ModelProcessorx/Balancethickness/CreateNodesBalancethickness.cpp\ + ./modules/ModelProcessorx/Balancethickness/CreateConstraintsBalancethickness.cpp\ + ./modules/ModelProcessorx/Balancethickness/CreateLoadsBalancethickness.cpp\ + ./modules/ModelProcessorx/Transient/UpdateElementsTransient.cpp\ + ./modules/ModelProcessorx/Qmu/CreateParametersQmu.cpp\ + ./modules/ParsePetscOptionsx/ParsePetscOptionsx.h\ + ./modules/ParsePetscOptionsx/ParsePetscOptionsx.cpp\ + ./modules/NodesDofx/NodesDofx.h\ + ./modules/NodesDofx/NodesDofx.cpp\ + ./modules/NodalValuex/NodalValuex.h\ + ./modules/NodalValuex/NodalValuex.cpp\ + ./modules/TriaSearchx/TriaSearchx.h\ + ./modules/TriaSearchx/TriaSearchx.cpp\ + ./modules/VerticesDofx/VerticesDofx.h\ + ./modules/VerticesDofx/VerticesDofx.cpp\ + ./modules/OutputResultsx/OutputResultsx.h\ + ./modules/OutputResultsx/OutputResultsx.cpp\ + ./modules/MinVelx/MinVelx.h\ + ./modules/MinVelx/MinVelx.cpp\ + ./modules/MaxVelx/MaxVelx.h\ + ./modules/MaxVelx/MaxVelx.cpp\ + ./modules/MaxAbsVxx/MaxAbsVxx.h\ + ./modules/MaxAbsVxx/MaxAbsVxx.cpp\ + ./modules/MaxAbsVyx/MaxAbsVyx.h\ + ./modules/MaxAbsVyx/MaxAbsVyx.cpp\ + ./modules/MaxAbsVzx/MaxAbsVzx.h\ + ./modules/MaxAbsVzx/MaxAbsVzx.cpp\ + ./modules/MaxVxx/MaxVxx.h\ + ./modules/MaxVxx/MaxVxx.cpp\ + ./modules/MaxVyx/MaxVyx.h\ + ./modules/MaxVyx/MaxVyx.cpp\ + ./modules/MaxVzx/MaxVzx.h\ + ./modules/MaxVzx/MaxVzx.cpp\ + ./modules/MinVxx/MinVxx.h\ + ./modules/MinVxx/MinVxx.cpp\ + ./modules/MinVyx/MinVyx.h\ + ./modules/MinVyx/MinVyx.cpp\ + ./modules/MinVzx/MinVzx.h\ + ./modules/MinVzx/MinVzx.cpp\ + ./modules/KMLMeshWritex/KMLFileReadx.h\ + ./modules/KMLMeshWritex/KMLFileReadx.cpp\ + ./modules/KMLMeshWritex/KMLMeshWritex.h\ + ./modules/KMLMeshWritex/KMLMeshWritex.cpp\ + ./modules/KMLOverlayx/KMLOverlayx.h\ + ./modules/KMLOverlayx/KMLOverlayx.cpp\ + ./modules/Xy2llx/Xy2llx.h\ + ./modules/Xy2llx/Xy2llx.cpp\ + ./modules/Ll2xyx/Ll2xyx.h\ + ./modules/Ll2xyx/Ll2xyx.cpp\ + ./modules/Exp2Kmlx/Exp2Kmlx.cpp\ + ./modules/Exp2Kmlx/Exp2Kmlx.cpp\ + ./modules/Kml2Expx/Kml2Expx.cpp\ + ./modules/Kml2Expx/Kml2Expx.cpp\ + ./modules/InputDuplicatex/InputDuplicatex.h\ + ./modules/InputDuplicatex/InputDuplicatex.cpp\ + ./modules/InputScalex/InputScalex.h\ + ./modules/InputScalex/InputScalex.cpp\ + ./modules/InputControlUpdatex/InputControlUpdatex.h\ + ./modules/InputControlUpdatex/InputControlUpdatex.cpp\ + ./modules/SurfaceAreax/SurfaceAreax.h\ + ./modules/SurfaceAreax/SurfaceAreax.cpp\ + ./modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.h\ + ./modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp\ + ./modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.h\ + ./modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp\ + ./modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.h\ + ./modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp\ + ./modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.h\ + ./modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp\ + ./modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.h\ + ./modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp\ + ./modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.h\ + ./modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp\ + ./modules/CostFunctionx/CostFunctionx.h\ + ./modules/CostFunctionx/CostFunctionx.cpp\ + ./modules/CreateNodalConstraintsx/CreateNodalConstraintsx.h\ + ./modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp\ + ./modules/Orthx/Orthx.h\ + ./modules/Orthx/Orthx.cpp\ + ./modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.h\ + ./modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp\ + ./modules/Gradjx/Gradjx.h\ + ./modules/Gradjx/Gradjx.cpp\ + ./modules/IoModelToConstraintsx/IoModelToConstraintsx.h\ + ./modules/IoModelToConstraintsx/IoModelToConstraintsx.cpp\ + ./modules/InputUpdateFromConstantx/InputUpdateFromConstantx.h\ + ./modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp\ + ./modules/InputUpdateFromDakotax/InputUpdateFromDakotax.h\ + ./modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp\ + ./modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h\ + ./modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp\ + ./modules/DakotaResponsesx/DakotaResponsesx.h\ + ./modules/DakotaResponsesx/DakotaResponsesx.cpp\ + ./modules/GetSolutionFromInputsx/GetSolutionFromInputsx.h\ + ./modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp\ + ./modules/GetVectorFromInputsx/GetVectorFromInputsx.h\ + ./modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp\ + ./modules/InputUpdateFromVectorx/InputUpdateFromVectorx.h\ + ./modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp\ + ./modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.h\ + ./modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp\ + ./modules/InputArtificialNoisex/InputArtificialNoisex.h\ + ./modules/InputArtificialNoisex/InputArtificialNoisex.cpp\ + ./modules/TimeAdaptx/TimeAdaptx.h\ + ./modules/TimeAdaptx/TimeAdaptx.cpp\ + ./modules/UpdateVertexPositionsx/UpdateVertexPositionsx.h\ + ./modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp\ + ./modules/ConfigureObjectsx/ConfigureObjectsx.h\ + ./modules/ConfigureObjectsx/ConfigureObjectsx.cpp\ + ./modules/ComputeBasalStressx/ComputeBasalStressx.h\ + ./modules/ComputeBasalStressx/ComputeBasalStressx.cpp\ + ./modules/ComputeStrainRatex/ComputeStrainRatex.h\ + ./modules/ComputeStrainRatex/ComputeStrainRatex.cpp\ + ./modules/SpcNodesx/SpcNodesx.h\ + ./modules/SpcNodesx/SpcNodesx.cpp\ + ./modules/UpdateConstraintsx/UpdateConstraintsx.h\ + ./modules/UpdateConstraintsx/UpdateConstraintsx.cpp\ + ./modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp\ + ./modules/InterpFromGridToMeshx/InterpFromGridToMeshx.h\ + ./modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp\ + ./modules/InterpFromMesh2dx/InterpFromMesh2dxt.cpp\ + ./modules/InterpFromMesh2dx/InterpFromMesh2dx.h\ + ./modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp\ + ./modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.h\ + ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp\ + ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h\ + ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.cpp\ + ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.h\ + ./modules/HoleFillerx/HoleFillerx.cpp\ + ./modules/HoleFillerx/HoleFillerx.h\ + ./modules/AverageFilterx/AverageFilterx.cpp\ + ./modules/AverageFilterx/AverageFilterx.h\ + ./modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp\ + ./modules/AverageOntoPartitionx/AverageOntoPartitionx.h\ + ./modules/MeshPartitionx/MeshPartitionx.cpp\ + ./modules/MeshPartitionx/MeshPartitionx.h\ + ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.cpp\ + ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.h\ + ./modules/MeshProfileIntersectionx/MeshSegmentsIntersection.cpp\ + ./modules/MeshProfileIntersectionx/ElementSegmentsIntersection.cpp\ + ./modules/MeshProfileIntersectionx/ElementSegment.cpp\ + ./modules/MeshProfileIntersectionx/SegmentIntersect.cpp\ + ./modules/MeshProfileIntersectionx/NodeInElement.cpp\ + ./modules/ContourToMeshx/ContourToMeshx.cpp\ + ./modules/ContourToMeshx/ContourToMeshxt.cpp\ + ./modules/ContourToMeshx/ContourToMeshx.h\ + ./modules/Reducevectorgtosx/Reducevectorgtosx.cpp\ + ./modules/Reducevectorgtosx/Reducevectorgtosx.h\ + ./modules/Reducevectorgtofx/Reducevectorgtofx.cpp\ + ./modules/Reducevectorgtofx/Reducevectorgtofx.h\ + ./modules/Reduceloadx/Reduceloadx.h\ + ./modules/Reduceloadx/Reduceloadx.cpp\ + ./modules/EnumToStringx/EnumToStringx.cpp\ + ./modules/EnumToStringx/EnumToStringx.h\ + ./modules/StringToEnumx/StringToEnumx.cpp\ + ./modules/StringToEnumx/StringToEnumx.h\ + ./modules/MassFluxx/MassFluxx.cpp\ + ./modules/MassFluxx/MassFluxx.h\ + ./modules/ControlInputGetGradientx/ControlInputGetGradientx.cpp\ + ./modules/ControlInputGetGradientx/ControlInputGetGradientx.h\ + ./modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp\ + ./modules/ControlInputSetGradientx/ControlInputSetGradientx.h\ + ./modules/ControlInputScaleGradientx/ControlInputScaleGradientx.cpp\ + ./modules/ControlInputScaleGradientx/ControlInputScaleGradientx.h\ + ./modules/SystemMatricesx/SystemMatricesx.cpp\ + ./modules/SystemMatricesx/SystemMatricesx.h\ + ./modules/ConstraintsStatex/ConstraintsStatex.cpp\ + ./modules/ConstraintsStatex/ConstraintsStatex.h\ + ./modules/ConstraintsStatex/ConstraintsStateLocal.h\ + ./modules/ConstraintsStatex/RiftConstraintsState.cpp\ + ./modules/ConstraintsStatex/ThermalConstraintsState.cpp\ + ./modules/ConstraintsStatex/ThermalIsPresent.cpp\ + ./modules/Responsex/Responsex.h\ + ./modules/Responsex/Responsex.cpp\ + ./modules/RequestedOutputsx/RequestedOutputsx.h\ + ./modules/RequestedOutputsx/RequestedOutputsx.cpp\ + ./modules/ResetConstraintsx/ResetConstraintsx.h\ + ./modules/ResetConstraintsx/ResetConstraintsx.cpp\ + ./modules/ResetConstraintsx/ThermalConstraintsReset.cpp\ + ./modules/Solverx/Solverx.cpp\ + ./modules/Solverx/Solverx.h\ + ./modules/Solverx/DofTypesToIndexSet.cpp\ + ./modules/VecMergex/VecMergex.cpp\ + ./modules/VecMergex/VecMergex.h\ + ./modules/Scotchx/Scotchx.cpp\ + ./modules/Scotchx/Scotchx.h\ + ./modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp\ + ./modules/Mergesolutionfromftogx/Mergesolutionfromftogx.h\ + ./modules/Dakotax/Dakotax.h\ + ./modules/Dakotax/Dakotax.cpp\ + ./modules/Dakotax/DakotaMPI_Bcast.cpp\ + ./modules/Dakotax/DakotaFree.cpp\ + ./modules/Dakotax/SpawnCore.cpp\ + ./modules/Dakotax/SpawnCoreParallel.cpp\ + ./modules/InputToResultx/InputToResultx.cpp\ + ./modules/InputToResultx/InputToResultx.h\ + ./modules/InputConvergencex/InputConvergencex.cpp\ + ./modules/InputConvergencex/InputConvergencex.h\ + ./modules/OutputRiftsx/OutputRiftsx.h\ + ./modules/OutputRiftsx/OutputRiftsx.cpp\ + ./modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp\ + ./modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.h\ + ./modules/ThicknessAbsGradientx/ThicknessAbsGradientx.cpp\ + ./modules/ThicknessAbsGradientx/ThicknessAbsGradientx.h\ + ./modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp\ + ./modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.h\ + ./modules/RheologyBbarx/RheologyBbarx.cpp\ + ./modules/RheologyBbarx/RheologyBbarx.h\ + ./solutions/diagnostic_core.cpp\ + ./solutions/convergence.cpp\ + ./solutions/thermal_core.cpp\ + ./solutions/thermal_core_step.cpp\ + ./solutions/enthalpy_core.cpp\ + ./solutions/WriteLockFile.cpp\ + ./solutions/control_core.cpp\ + ./solutions/controltao_core.cpp\ + ./solutions/controlrestart.cpp\ + ./solutions/controlconvergence.cpp\ + ./solutions/objectivefunctionC.cpp\ + ./solutions/gradient_core.cpp\ + ./solutions/adjointdiagnostic_core.cpp\ + ./solutions/adjointbalancethickness_core.cpp\ + ./solutions/prognostic_core.cpp\ + ./solutions/prognostic_core_ad.cpp\ + ./solutions/balancethickness_core.cpp\ + ./solutions/surfaceslope_core.cpp\ + ./solutions/bedslope_core.cpp\ + ./solutions/hydrology_core.cpp\ + ./solutions/hydrology_core_step.cpp\ + ./solutions/transient_core.cpp\ + ./solutions/groundinglinemigration2d_core.cpp\ + ./solutions/steadystate_core.cpp\ + ./solutions/steadystateconvergence.cpp\ + ./solutions/ResetBoundaryConditions.cpp\ + ./solutions/AnalysisConfiguration.cpp\ + ./solutions/CorePointerFromSolutionEnum.cpp\ + ./solutions/AdjointCorePointerFromSolutionEnum.cpp\ + ./solvers/solver_linear.cpp\ + ./solvers/solver_adjoint_linear.cpp\ + ./solvers/solver_nonlinear.cpp\ + ./solvers/solver_stokescoupling_nonlinear.cpp\ + ./solvers/solver_thermal_nonlinear.cpp\ + ./modules/Bamgx/Bamgx.cpp\ + ./modules/Bamgx/Bamgx.h\ + ./modules/BamgConvertMeshx/BamgConvertMeshx.cpp\ + ./modules/BamgConvertMeshx/BamgConvertMeshx.h + +libpISSM_a_CXXFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(CXXOPTFLAGS) + +if NOPARALLEL +bin_PROGRAMS = +else +bin_PROGRAMS = issm.exe +endif + +LDADD = ./libpISSM.a $(PETSCLIB) $(TAOLIB) $(FLIBS) $(PLAPACKLIB) $(MUMPSLIB) $(SCALAPACKLIB) $(BLACSLIB) $(HYPRELIB) $(MLLIB) $(DAKOTALIB) $(METISLIB) $(CHACOLIB) $(SCOTCHLIB) $(BLASLAPACKLIB) $(MKLLIB) $(MPILIB) $(MATHLIB) $(FORTRANLIB) $(GRAPHICSLIB) libOverload.a $(MULTITHREADINGLIB) $(ADICLIB) libAD.a + +issm_exe_SOURCES = solutions/issm.cpp +issm_exe_CXXFLAGS= -fPIC -D_PARALLEL_ $(CXXOPTFLAGS) $(COPTFLAGS) + +#Automatic differentiation rules: +%.ad.c: %.c + adic2 -mforward $< --nary + Index: /issm/trunk/src/c/EnumDefinitions/EnumDefinitions.h =================================================================== --- /issm/trunk/src/c/EnumDefinitions/EnumDefinitions.h (revision 9717) +++ /issm/trunk/src/c/EnumDefinitions/EnumDefinitions.h (revision 9718) @@ -485,5 +485,8 @@ SpcDynamicEnum, NumberOfEdgesEnum, - + /*Automatic differentiation: */ + AdAnalysisEnum, + AdForwardEnum, + AdReverseEnum, MaximumNumberOfEnums }; Index: /issm/trunk/src/c/modules/EnumToStringx/EnumToStringx.cpp =================================================================== --- /issm/trunk/src/c/modules/EnumToStringx/EnumToStringx.cpp (revision 9717) +++ /issm/trunk/src/c/modules/EnumToStringx/EnumToStringx.cpp (revision 9718) @@ -429,4 +429,7 @@ case SpcDynamicEnum : return "SpcDynamic"; case NumberOfEdgesEnum : return "NumberOfEdges"; + case AdAnalysisEnum : return "AdAnalysis"; + case AdForwardEnum : return "AdForward"; + case AdReverseEnum : return "AdReverse"; default : return "unknown"; Index: /issm/trunk/src/c/modules/ModelProcessorx/CreateParameters.cpp =================================================================== --- /issm/trunk/src/c/modules/ModelProcessorx/CreateParameters.cpp (revision 9717) +++ /issm/trunk/src/c/modules/ModelProcessorx/CreateParameters.cpp (revision 9718) @@ -68,4 +68,7 @@ parameters->AddObject(iomodel->CopyConstantObject(TransientIsgroundinglineEnum)); parameters->AddObject(iomodel->CopyConstantObject(MaterialsRheologyLawEnum)); + parameters->AddObject(iomodel->CopyConstantObject(AdAnalysisEnum)); + parameters->AddObject(iomodel->CopyConstantObject(AdForwardEnum)); + parameters->AddObject(iomodel->CopyConstantObject(AdReverseEnum)); /*some parameters that did not come with the iomodel: */ Index: /issm/trunk/src/c/modules/StringToEnumx/StringToEnumx.cpp =================================================================== --- /issm/trunk/src/c/modules/StringToEnumx/StringToEnumx.cpp (revision 9717) +++ /issm/trunk/src/c/modules/StringToEnumx/StringToEnumx.cpp (revision 9718) @@ -427,4 +427,7 @@ else if (strcmp(name,"SpcDynamic")==0) return SpcDynamicEnum; else if (strcmp(name,"NumberOfEdges")==0) return NumberOfEdgesEnum; + else if (strcmp(name,"AdAnalysis")==0) return AdAnalysisEnum; + else if (strcmp(name,"AdForward")==0) return AdForwardEnum; + else if (strcmp(name,"AdReverse")==0) return AdReverseEnum; else _error_("Enum %s not found",name); Index: sm/trunk/src/c/solutions/prognostic_core_ad.cpp =================================================================== --- /issm/trunk/src/c/solutions/prognostic_core_ad.cpp (revision 9717) +++ (revision ) @@ -1,35 +1,0 @@ -/*!\file: prognostic_core_ad.cpp - * \brief: core of the ad (automatic differentiation) prognostic solution - */ - -#include "../toolkits/toolkits.h" -#include "../objects/objects.h" -#include "../shared/shared.h" -#include "../EnumDefinitions/EnumDefinitions.h" -#include "./solutions.h" -#include "../modules/modules.h" -#include "../solvers/solvers.h" - -void prognostic_core_ad(FemModel* femmodel){ - - /*parameters: */ - int solution_type; - bool control_analysis; - - /*activate formulation: */ - femmodel->SetCurrentConfiguration(PrognosticAnalysisEnum); - - /*recover parameters: */ - femmodel->parameters->FindParam(&control_analysis,ControlAnalysisEnum); - femmodel->parameters->FindParam(&solution_type,SolutionTypeEnum); - - _printf_(VerboseSolution()," call computational core\n"); - solver_linear(femmodel); - - if(solution_type==PrognosticSolutionEnum && !control_analysis){ - _printf_(VerboseSolution()," saving results\n"); - InputToResultx(femmodel->elements,femmodel->nodes,femmodel->vertices,femmodel->loads,femmodel->materials,femmodel->parameters,ThicknessEnum); - } - -} - Index: /issm/trunk/src/m/enum/AdAnalysisEnum.m =================================================================== --- /issm/trunk/src/m/enum/AdAnalysisEnum.m (revision 9718) +++ /issm/trunk/src/m/enum/AdAnalysisEnum.m (revision 9718) @@ -0,0 +1,11 @@ +function macro=AdAnalysisEnum() +%ADANALYSISENUM - Enum of AdAnalysis +% +% WARNING: DO NOT MODIFY THIS FILE +% this file has been automatically generated by src/c/EnumDefinitions/Synchronize.sh +% Please read src/c/EnumDefinitions/README for more information +% +% Usage: +% macro=AdAnalysisEnum() + +macro=StringToEnum('AdAnalysis'); Index: /issm/trunk/src/m/enum/AdForwardEnum.m =================================================================== --- /issm/trunk/src/m/enum/AdForwardEnum.m (revision 9718) +++ /issm/trunk/src/m/enum/AdForwardEnum.m (revision 9718) @@ -0,0 +1,11 @@ +function macro=AdForwardEnum() +%ADFORWARDENUM - Enum of AdForward +% +% WARNING: DO NOT MODIFY THIS FILE +% this file has been automatically generated by src/c/EnumDefinitions/Synchronize.sh +% Please read src/c/EnumDefinitions/README for more information +% +% Usage: +% macro=AdForwardEnum() + +macro=StringToEnum('AdForward'); Index: /issm/trunk/src/m/enum/AdReverseEnum.m =================================================================== --- /issm/trunk/src/m/enum/AdReverseEnum.m (revision 9718) +++ /issm/trunk/src/m/enum/AdReverseEnum.m (revision 9718) @@ -0,0 +1,11 @@ +function macro=AdReverseEnum() +%ADREVERSEENUM - Enum of AdReverse +% +% WARNING: DO NOT MODIFY THIS FILE +% this file has been automatically generated by src/c/EnumDefinitions/Synchronize.sh +% Please read src/c/EnumDefinitions/README for more information +% +% Usage: +% macro=AdReverseEnum() + +macro=StringToEnum('AdReverse');