Index: /issm/trunk/template
===================================================================
--- /issm/trunk/template	(revision 9601)
+++ /issm/trunk/template	(revision 9602)
@@ -49,5 +49,5 @@
 	  bathymetry
 
-	  thickness_coeff -> delete or rename (See with John)?
+	  thickness_coeff -> rename hydrostatic_ratio (change ThicknessCorrection.m accordingly)
 }}}
 mask{{{
@@ -67,5 +67,4 @@
 	rifts
 	numrifts
-	riftinfo -> should be removed (constructed by marshall)
 	riftproperties
 }}}
@@ -107,5 +106,4 @@
 		elements_type -> change to element_equation
 		vertices_type -> rename to vertex_equation
-		borderstokes -> rename vertex_boundary_equation
 		
 		elementonhutter ->delete
@@ -118,6 +116,4 @@
 		nodeonpattyn->delete
 		nodeonstokes->delete
-		elements_type2d -> delete
-		vertices_type2d -> delete
 }}}
 initialization{{{
@@ -216,11 +212,7 @@
 	nsteps
 	maxiter -> rename maxiter_per_step
-	tolx    -> hardcoded,delete
 	optscal -> gradient_scaling
 	cm_jump -> step_threshold
 	eps_cm  -> misfit_threshold
-
-	epsvel  -> hardcoded, delete
-	meanvel -> hardcoded, delete
 
 	vx_obs
@@ -241,5 +233,4 @@
 	part ->partition
 	npart -> numberofpartitions
-	numberofvariables
 	numberofresponses
 	variabledescriptors
@@ -248,5 +239,4 @@
 	qmu_mass_flux_profiles
 	qmu_mass_flux_segments
-	qmu_relax -> investigate
 
 	adjacency
@@ -264,7 +254,4 @@
 }}}
 
-verbose {{{
-	-> already exists
-}}}
 cluster{{{
 	waitonlock -> cluster dependent to be added to all cluster classes
@@ -287,8 +274,4 @@
 petscoptions -> could become the class itself
 }}}
-debug{{{
-	gprof
-	mem_debug -> rename valgrind
-}}}
 constants{{{
 	%not material dependent
@@ -313,6 +296,4 @@
 private {{{
 	runtimename
-	inputfilename -> is it really needed? it is just runtimename.bon
-	outputfilename -> same
 	solution_type -> erase and get this from the outbin
 	bamg