Index: /issm/trunk/template
===================================================================
--- /issm/trunk/template	(revision 9451)
+++ /issm/trunk/template	(revision 9452)
@@ -26,7 +26,5 @@
 	  x2d
 	  y2d
-	  z2d -> remove
-
-	  extrusionexponent -> remove
+
 	  elementonbed
 	  elementonsurface
@@ -36,5 +34,5 @@
 	  nodeconnectivity
 	  elementconnectivity
-	  connectivity ->investigate
+	  connectivity -> rename average_vertex_connectivity
 
 	  segments
@@ -50,9 +48,4 @@
 	  bed
 	  bathymetry
-
-	  bed_slopex ->remove
-	  bed_slopey ->remove
-	  surface_slopex->remove
-	  surface_slopey->remove
 
 	  thickness_coeff -> delete or rename (See with John)?
@@ -80,5 +73,4 @@
 	rho_ice
 	rho_water
-	rho_firn -> remove
 	heatcapacity
 	latentheat
@@ -93,5 +85,4 @@
 }}}
 friction{{{
-	drag_type -> delete
 	drag_coefficient
 	drag_p
@@ -106,5 +97,4 @@
 	basal_melting_rate -> remove basal_*
 	basal_melting_rate_correction
-	basal_melting_rate_correction_apply -> remove (correction 0 has the same effect)
 	geothermalflux
 }}}
@@ -164,5 +154,4 @@
 thermal{{{
 	spctemperature
-	penalty_melting -> delete
 	min_thermal_constraints -> rename thermal_penalty_threshold
 	artificial_diffusivity -> rename stabilization
@@ -196,5 +185,5 @@
    isprognostic
    isthermal
-   idsgroundingline -> add
+   isgroundingline -> add
    requested_outputs
 }}}
@@ -260,5 +249,4 @@
 	qmu_mass_flux_segments
 	qmu_relax -> investigate
-	qmu_save_femmodel -> trash
 
 	adjacency
@@ -287,5 +275,4 @@
 	ndt-> rename final_time
 	time_adapt -> "cfl" "none"
-	adaptative_cfl -> remove
 	cfl_coefficient
 }}}
@@ -303,5 +290,4 @@
 	gprof
 	mem_debug -> rename valgrind
-	memoryleaks -> delete
 }}}
 constants{{{
@@ -313,5 +299,4 @@
 settings{{{
 io_gather
-sparsity
 lowmem
 }}}
@@ -327,7 +312,5 @@
 }}}
 private {{{
-	counter -> not needed
 	runtimename
-	runmefile -> erase
 	inputfilename -> is it really needed? it is just runtimename.bon
 	outputfilename -> same
@@ -335,46 +318,2 @@
 	bamg
 }}}
-
-mesh_domainoutline -> remove
-mesh_riftoutline -> remove
-mesh_resolution -> remove
-domainoutline -> remove
-riftoutline -> remove
-iceshelfoutline ->remove
-icesheetoutline -> remove
-wateroutline -> remove
-parameterfile -> remove
-
-vx_obs_raw -> remove (should be in dummy)
-vy_obs_raw -> remove (should be in dummy)
-vel_obs_raw -> remove (should be in dummy)
-vx_bal -> remove (should be in dummy)
-vy_bal -> remove (should be in dummy)
-vel_bal -> remove (should be in dummy)
-
-forcings -> delete
-minh -> remove and put into prognostic 
-firn_layer -> remove (never used)
-deltaH -> remove (unused)
-DeltaH -> remove (unused)
-deltaT -> remove (unused)
-DeltaT -> remove (unused)
-timeacc -> remove (unused)
-timedec -> remove (unused)
-observed_temperature -> remove
-repository -> remove (out of core never used)
-loadresults -> remove (should be an option of solve: md=solve(md,DiagnosticSolutionEnum,'loadonly',1))
-
-element_debug -> remove
-element_debugid -> remove
-
-viscousheating -> remove (that's a model result)
-pressure_elem -> remove (that's a model result)
-stress-> remove (that's a model result)
-stress_surface-> remove (that's a model result)
-stress_bed-> remove (that's a model result)
-deviatoricstress-> remove (that's a model result)
-strainrate-> remove (that's a model result)
-
-alloc_cleanup -> remove -> and put in cosmos cleanup
-mask -> delete?