Index: /issm/trunk/doxygen/doc_c/doxygen.config
===================================================================
--- /issm/trunk/doxygen/doc_c/doxygen.config	(revision 9331)
+++ /issm/trunk/doxygen/doc_c/doxygen.config	(revision 9332)
@@ -231,5 +231,5 @@
 # you also need to set FILE_PATTERNS otherwise the files are not read by doxygen.
 
-EXTENSION_MAPPING      =
+EXTENSION_MAPPING      =.m=C++
 
 # If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
@@ -611,5 +611,5 @@
 # with spaces.
 
-INPUT                  = ./src/c ./src/mex ./src/dox
+INPUT                  = ./src/c ./src/mex ./src/dox ./src/m
 
 # This tag can be used to specify the character encoding of the source files
@@ -629,5 +629,5 @@
 # *.f90 *.f *.for *.vhd *.vhdl
 
-FILE_PATTERNS          = *.c *.cpp *.dox *.h
+FILE_PATTERNS          = *.c *.cpp *.dox *.h *.m
 
 # The RECURSIVE tag can be used to turn specify whether or not subdirectories
@@ -655,5 +655,5 @@
 # for example use the pattern */test/*
 
-EXCLUDE_PATTERNS       =  */Bamg/*
+EXCLUDE_PATTERNS       =  */Bamg/* */.svn*
 
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
@@ -711,5 +711,5 @@
 # non of the patterns match the file name, INPUT_FILTER is applied.
 
-FILTER_PATTERNS        =
+FILTER_PATTERNS        =*.m=./src/perl/m2cpp.pl
 
 # If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
@@ -717,5 +717,5 @@
 # files to browse (i.e. when SOURCE_BROWSER is set to YES).
 
-FILTER_SOURCE_FILES    = NO
+FILTER_SOURCE_FILES    = 
 
 # The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file
@@ -725,5 +725,5 @@
 # FILTER_SOURCE_FILES is enabled.
 
-FILTER_SOURCE_PATTERNS =
+FILTER_SOURCE_PATTERNS = YES
 
 #---------------------------------------------------------------------------