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Changeset 9312

Timestamp:

08/12/11 08:45:14 (14 years ago)

Author:

Mathieu Morlighem

Message:

Better doxygen doc

Location:

issm/trunk/doxygen

Files:

: 1 added
: 3 edited

creatematlabhtmldoc.sh (modified) (2 diffs)
doc_c/doxygen.config (modified) (12 diffs)
doc_c/layoutissm.xml (modified) (2 diffs)
doc_c/logo_ISSM.png (added)

Legend:

: Unmodified
: Added
: Removed

issm/trunk/doxygen/creatematlabhtmldoc.sh

-              r9308
+              r9312
 #copy issm_template in m2html
+cd $ISSM_TIER/externalpackages/m2html/install/templates
+ln -s $ISSM_TIER/doxygen/doc_m/template_issm ./template_issm
+ln -s $ISSM_TIER/doxygen/doc_m/template_issm $ISSM_TIER/externalpackages/m2html/install/templates/
 #go to the main directory
 …
         %run m2html, and dump the documentation in ISSM_TIER/doc/website/doc_m/matlabhtml
+        m2html('htmldir',[issmtier() '/doxygen/doc_m/matlabhtml'],'recursive','on','source','on',...
+        'syntaxHighlighting','on','globalHypertextLinks','on','global','on','template','template_issm',...
+        'graph','off','index','menu','mFiles',mfiles);
+        m2html('mFiles',mfiles,...
+        'htmlDir',[issmtier() '/doxygen/doc_m/matlabhtml'],...
+        'recursive','on',...
+        'source','on',...
+        'syntaxHighlighting','on',...
+        'tabs',3,...
+        'globalHypertextLinks','on',...
+        'todo','on',...
+        'indexFile','index.html',...
+        'extension','.html',...
+        'template','template_issm',...
+        'graph','off',...
+        'index','menu');
 EOF

issm/trunk/doxygen/doc_c/doxygen.config

-              r9308
+              r9312
 # Doxyfile 1.5.8
+# Doxyfile 1.7.4
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project
+# doxygen (www.doxygen.org) for a project.
+#
 # All text after a hash (#) is considered a comment and will be ignored
+# All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
 # For lists items can also be appended using:
 #       TAG += value [value, ...]
 # Values that contain spaces should be placed between quotes (" ")
+# Values that contain spaces should be placed between quotes (" ").
 #---------------------------------------------------------------------------
 …
 #---------------------------------------------------------------------------
 # This tag specifies the encoding used for all characters in the config file
 # that follow. The default is UTF-8 which is also the encoding used for all
 # text before the first occurrence of this tag. Doxygen uses libiconv (or the
 # iconv built into libc) for the transcoding. See
+# This tag specifies the encoding used for all characters in the config file
+# that follow. The default is UTF-8 which is also the encoding used for all
+# text before the first occurrence of this tag. Doxygen uses libiconv (or the
+# iconv built into libc) for the transcoding. See
 # http://www.gnu.org/software/libiconv for the list of possible encodings.
 DOXYFILE_ENCODING      = UTF-8
 # The PROJECT_NAME tag is a single word (or a sequence of words surrounded
+# The PROJECT_NAME tag is a single word (or a sequence of words surrounded
 # by quotes) that should identify the project.
 PROJECT_NAME           =  "ISSM"
 # The PROJECT_NUMBER tag can be used to enter a project or revision number.
 # This could be handy for archiving the generated documentation or
+PROJECT_NAME           = "Ice Sheet System Model"
+# The PROJECT_NUMBER tag can be used to enter a project or revision number.
+# This could be handy for archiving the generated documentation or
 # if some version control system is used.
+PROJECT_NUMBER         = "1.0"
+# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
+# base path where the generated documentation will be put.
+# If a relative path is entered, it will be relative to the location
+PROJECT_NUMBER         = "3.3"
+# Using the PROJECT_BRIEF tag one can provide an optional one line description
+# for a project that appears at the top of each page and should give viewer
+# a quick idea about the purpose of the project. Keep the description short.
+PROJECT_BRIEF          = "C/C++ code documentation"
+# With the PROJECT_LOGO tag one can specify an logo or icon that is
+# included in the documentation. The maximum height of the logo should not
+# exceed 55 pixels and the maximum width should not exceed 200 pixels.
+# Doxygen will copy the logo to the output directory.
+PROJECT_LOGO           = ./doxygen/doc_c/logo_ISSM.png
+# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
+# base path where the generated documentation will be put.
+# If a relative path is entered, it will be relative to the location
 # where doxygen was started. If left blank the current directory will be used.
 OUTPUT_DIRECTORY       =  ./doxygen/doc_c/
 # If the CREATE_SUBDIRS tag is set to YES, then doxygen will create
 # 4096 sub-directories (in 2 levels) under the output directory of each output
 # format and will distribute the generated files over these directories.
 # Enabling this option can be useful when feeding doxygen a huge amount of
 # source files, where putting all generated files in the same directory would
+OUTPUT_DIRECTORY       = ./doxygen/doc_c/
+# If the CREATE_SUBDIRS tag is set to YES, then doxygen will create
+# 4096 sub-directories (in 2 levels) under the output directory of each output
+# format and will distribute the generated files over these directories.
+# Enabling this option can be useful when feeding doxygen a huge amount of
+# source files, where putting all generated files in the same directory would
 # otherwise cause performance problems for the file system.
 CREATE_SUBDIRS         = NO
 # The OUTPUT_LANGUAGE tag is used to specify the language in which all
 # documentation generated by doxygen is written. Doxygen will use this
 # information to generate all constant output in the proper language.
 # The default language is English, other supported languages are:
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Farsi, Finnish, French, German, Greek,
 # Hungarian, Italian, Japanese, Japanese-en (Japanese with English messages),
 # Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian, Polish,
 # Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak, Slovene,
 # Spanish, Swedish, and Ukrainian.
+# The OUTPUT_LANGUAGE tag is used to specify the language in which all
+# documentation generated by doxygen is written. Doxygen will use this
+# information to generate all constant output in the proper language.
+# The default language is English, other supported languages are:
+# Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
+# Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
+# Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
+# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
+# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
+# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 OUTPUT_LANGUAGE        = English
 # If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will
 # include brief member descriptions after the members that are listed in
 # the file and class documentation (similar to JavaDoc).
+# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will
+# include brief member descriptions after the members that are listed in
+# the file and class documentation (similar to JavaDoc).
 # Set to NO to disable this.
 BRIEF_MEMBER_DESC      = YES
 # If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend
 # the brief description of a member or function before the detailed description.
 # Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
+# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend
+# the brief description of a member or function before the detailed description.
+# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
 # brief descriptions will be completely suppressed.
 REPEAT_BRIEF           = YES
 # This tag implements a quasi-intelligent brief description abbreviator
 # that is used to form the text in various listings. Each string
 # in this list, if found as the leading text of the brief description, will be
 # stripped from the text and the result after processing the whole list, is
 # used as the annotated text. Otherwise, the brief description is used as-is.
 # If left blank, the following values are used ("$name" is automatically
 # replaced with the name of the entity): "The $name class" "The $name widget"
 # "The $name file" "is" "provides" "specifies" "contains"
+# This tag implements a quasi-intelligent brief description abbreviator
+# that is used to form the text in various listings. Each string
+# in this list, if found as the leading text of the brief description, will be
+# stripped from the text and the result after processing the whole list, is
+# used as the annotated text. Otherwise, the brief description is used as-is.
+# If left blank, the following values are used ("$name" is automatically
+# replaced with the name of the entity): "The $name class" "The $name widget"
+# "The $name file" "is" "provides" "specifies" "contains"
 # "represents" "a" "an" "the"
 ABBREVIATE_BRIEF       =
 # If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
 # Doxygen will generate a detailed section even if there is only a brief
+ABBREVIATE_BRIEF       =
+# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
+# Doxygen will generate a detailed section even if there is only a brief
 # description.
 ALWAYS_DETAILED_SEC    = NO
 # If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
 # inherited members of a class in the documentation of that class as if those
 # members were ordinary class members. Constructors, destructors and assignment
+# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
+# inherited members of a class in the documentation of that class as if those
+# members were ordinary class members. Constructors, destructors and assignment
 # operators of the base classes will not be shown.
 INLINE_INHERITED_MEMB  = NO
 # If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full
 # path before files name in the file list and in the header files. If set
+# If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full
+# path before files name in the file list and in the header files. If set
 # to NO the shortest path that makes the file name unique will be used.
 FULL_PATH_NAMES        = YES
 # If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag
 # can be used to strip a user-defined part of the path. Stripping is
 # only done if one of the specified strings matches the left-hand part of
 # the path. The tag can be used to show relative paths in the file list.
 # If left blank the directory from which doxygen is run is used as the
+# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag
+# can be used to strip a user-defined part of the path. Stripping is
+# only done if one of the specified strings matches the left-hand part of
+# the path. The tag can be used to show relative paths in the file list.
+# If left blank the directory from which doxygen is run is used as the
 # path to strip.
 STRIP_FROM_PATH        =
 # The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of
 # the path mentioned in the documentation of a class, which tells
 # the reader which header file to include in order to use a class.
 # If left blank only the name of the header file containing the class
 # definition is used. Otherwise one should specify the include paths that
+STRIP_FROM_PATH        =
+# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of
+# the path mentioned in the documentation of a class, which tells
+# the reader which header file to include in order to use a class.
+# If left blank only the name of the header file containing the class
+# definition is used. Otherwise one should specify the include paths that
 # are normally passed to the compiler using the -I flag.
 STRIP_FROM_INC_PATH    =
 # If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter
 # (but less readable) file names. This can be useful is your file systems
+STRIP_FROM_INC_PATH    =
+# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter
+# (but less readable) file names. This can be useful if your file system
 # doesn't support long names like on DOS, Mac, or CD-ROM.
 SHORT_NAMES            = NO
 # If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen
 # will interpret the first line (until the first dot) of a JavaDoc-style
 # comment as the brief description. If set to NO, the JavaDoc
 # comments will behave just like regular Qt-style comments
+# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen
+# will interpret the first line (until the first dot) of a JavaDoc-style
+# comment as the brief description. If set to NO, the JavaDoc
+# comments will behave just like regular Qt-style comments
 # (thus requiring an explicit @brief command for a brief description.)
 JAVADOC_AUTOBRIEF      = YES
 # If the QT_AUTOBRIEF tag is set to YES then Doxygen will
 # interpret the first line (until the first dot) of a Qt-style
 # comment as the brief description. If set to NO, the comments
 # will behave just like regular Qt-style comments (thus requiring
+JAVADOC_AUTOBRIEF      = NO
+# If the QT_AUTOBRIEF tag is set to YES then Doxygen will
+# interpret the first line (until the first dot) of a Qt-style
+# comment as the brief description. If set to NO, the comments
+# will behave just like regular Qt-style comments (thus requiring
 # an explicit \brief command for a brief description.)
 QT_AUTOBRIEF           = NO
 # The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen
 # treat a multi-line C++ special comment block (i.e. a block of //! or ///
 # comments) as a brief description. This used to be the default behaviour.
 # The new default is to treat a multi-line C++ comment block as a detailed
+# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen
+# treat a multi-line C++ special comment block (i.e. a block of //! or ///
+# comments) as a brief description. This used to be the default behaviour.
+# The new default is to treat a multi-line C++ comment block as a detailed
 # description. Set this tag to YES if you prefer the old behaviour instead.
 MULTILINE_CPP_IS_BRIEF = NO
 # If the INHERIT_DOCS tag is set to YES (the default) then an undocumented
 # member inherits the documentation from any documented member that it
+# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented
+# member inherits the documentation from any documented member that it
 # re-implements.
 INHERIT_DOCS           = YES
 # If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce
 # a new page for each member. If set to NO, the documentation of a member will
+# If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce
+# a new page for each member. If set to NO, the documentation of a member will
 # be part of the file/class/namespace that contains it.
 SEPARATE_MEMBER_PAGES  = NO
 # The TAB_SIZE tag can be used to set the number of spaces in a tab.
+# The TAB_SIZE tag can be used to set the number of spaces in a tab.
 # Doxygen uses this value to replace tabs by spaces in code fragments.
 TAB_SIZE               = 8
 # This tag can be used to specify a number of aliases that acts
 # as commands in the documentation. An alias has the form "name=value".
 # For example adding "sideeffect=\par Side Effects:\n" will allow you to
 # put the command \sideeffect (or @sideeffect) in the documentation, which
 # will result in a user-defined paragraph with heading "Side Effects:".
+# This tag can be used to specify a number of aliases that acts
+# as commands in the documentation. An alias has the form "name=value".
+# For example adding "sideeffect=\par Side Effects:\n" will allow you to
+# put the command \sideeffect (or @sideeffect) in the documentation, which
+# will result in a user-defined paragraph with heading "Side Effects:".
 # You can put \n's in the value part of an alias to insert newlines.
 ALIASES                =
 # Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C
 # sources only. Doxygen will then generate output that is more tailored for C.
 # For instance, some of the names that are used will be different. The list
+ALIASES                =
+# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C
+# sources only. Doxygen will then generate output that is more tailored for C.
+# For instance, some of the names that are used will be different. The list
 # of all members will be omitted, etc.
 OPTIMIZE_OUTPUT_FOR_C  = YES
 # Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java
 # sources only. Doxygen will then generate output that is more tailored for
 # Java. For instance, namespaces will be presented as packages, qualified
+# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java
+# sources only. Doxygen will then generate output that is more tailored for
+# Java. For instance, namespaces will be presented as packages, qualified
 # scopes will look different, etc.
 OPTIMIZE_OUTPUT_JAVA   = NO
 # Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
 # sources only. Doxygen will then generate output that is more tailored for
+# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
+# sources only. Doxygen will then generate output that is more tailored for
 # Fortran.
 OPTIMIZE_FOR_FORTRAN   = NO
 # Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
 # sources. Doxygen will then generate output that is tailored for
+# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
+# sources. Doxygen will then generate output that is tailored for
 # VHDL.
 OPTIMIZE_OUTPUT_VHDL   = NO
+# Doxygen selects the parser to use depending on the extension of the files it parses.
+# With this tag you can assign which parser to use for a given extension.
+# Doxygen has a built-in mapping, but you can override or extend it using this tag.
+# The format is ext=language, where ext is a file extension, and language is one of
+# the parsers supported by doxygen: IDL, Java, Javascript, C#, C, C++, D, PHP,
+# Objective-C, Python, Fortran, VHDL, C, C++. For instance to make doxygen treat
+# .inc files as Fortran files (default is PHP), and .f files as C (default is Fortran),
+# use: inc=Fortran f=C
+EXTENSION_MAPPING      =
+# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
+# to include (a tag file for) the STL sources as input, then you should
+# set this tag to YES in order to let doxygen match functions declarations and
+# definitions whose arguments contain STL classes (e.g. func(std::string); v.s.
+# func(std::string) {}). This also make the inheritance and collaboration
+# Doxygen selects the parser to use depending on the extension of the files it
+# parses. With this tag you can assign which parser to use for a given extension.
+# Doxygen has a built-in mapping, but you can override or extend it using this
+# tag. The format is ext=language, where ext is a file extension, and language
+# is one of the parsers supported by doxygen: IDL, Java, Javascript, CSharp, C,
+# C++, D, PHP, Objective-C, Python, Fortran, VHDL, C, C++. For instance to make
+# doxygen treat .inc files as Fortran files (default is PHP), and .f files as C
+# (default is Fortran), use: inc=Fortran f=C. Note that for custom extensions
+# you also need to set FILE_PATTERNS otherwise the files are not read by doxygen.
+EXTENSION_MAPPING      =
+# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
+# to include (a tag file for) the STL sources as input, then you should
+# set this tag to YES in order to let doxygen match functions declarations and
+# definitions whose arguments contain STL classes (e.g. func(std::string); v.s.
+# func(std::string) {}). This also makes the inheritance and collaboration
 # diagrams that involve STL classes more complete and accurate.
 BUILTIN_STL_SUPPORT    = NO
 # If you use Microsoft's C++/CLI language, you should set this option to YES to
+# If you use Microsoft's C++/CLI language, you should set this option to YES to
 # enable parsing support.
 CPP_CLI_SUPPORT        = NO
 # Set the SIP_SUPPORT tag to YES if your project consists of sip sources only.
 # Doxygen will parse them like normal C++ but will assume all classes use public
+# Set the SIP_SUPPORT tag to YES if your project consists of sip sources only.
+# Doxygen will parse them like normal C++ but will assume all classes use public
 # instead of private inheritance when no explicit protection keyword is present.
 SIP_SUPPORT            = NO
 # For Microsoft's IDL there are propget and propput attributes to indicate getter
 # and setter methods for a property. Setting this option to YES (the default)
 # will make doxygen to replace the get and set methods by a property in the
 # documentation. This will only work if the methods are indeed getting or
 # setting a simple type. If this is not the case, or you want to show the
+# For Microsoft's IDL there are propget and propput attributes to indicate getter
+# and setter methods for a property. Setting this option to YES (the default)
+# will make doxygen replace the get and set methods by a property in the
+# documentation. This will only work if the methods are indeed getting or
+# setting a simple type. If this is not the case, or you want to show the
 # methods anyway, you should set this option to NO.
 IDL_PROPERTY_SUPPORT   = YES
 # If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
 # tag is set to YES, then doxygen will reuse the documentation of the first
 # member in the group (if any) for the other members of the group. By default
+# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
+# tag is set to YES, then doxygen will reuse the documentation of the first
+# member in the group (if any) for the other members of the group. By default
 # all members of a group must be documented explicitly.
 DISTRIBUTE_GROUP_DOC   = NO
 # Set the SUBGROUPING tag to YES (the default) to allow class member groups of
 # the same type (for instance a group of public functions) to be put as a
 # subgroup of that type (e.g. under the Public Functions section). Set it to
 # NO to prevent subgrouping. Alternatively, this can be done per class using
+# Set the SUBGROUPING tag to YES (the default) to allow class member groups of
+# the same type (for instance a group of public functions) to be put as a
+# subgroup of that type (e.g. under the Public Functions section). Set it to
+# NO to prevent subgrouping. Alternatively, this can be done per class using
 # the \nosubgrouping command.
 SUBGROUPING            = YES
+# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum
+# is documented as struct, union, or enum with the name of the typedef. So
+# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
+# with name TypeT. When disabled the typedef will appear as a member of a file,
+# namespace, or class. And the struct will be named TypeS. This can typically
+# be useful for C code in case the coding convention dictates that all compound
+# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and
+# unions are shown inside the group in which they are included (e.g. using
+# @ingroup) instead of on a separate page (for HTML and Man pages) or
+# section (for LaTeX and RTF).
+INLINE_GROUPED_CLASSES = NO
+# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum
+# is documented as struct, union, or enum with the name of the typedef. So
+# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
+# with name TypeT. When disabled the typedef will appear as a member of a file,
+# namespace, or class. And the struct will be named TypeS. This can typically
+# be useful for C code in case the coding convention dictates that all compound
 # types are typedef'ed and only the typedef is referenced, never the tag name.
 TYPEDEF_HIDES_STRUCT   = NO
 # The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
 # determine which symbols to keep in memory and which to flush to disk.
 # When the cache is full, less often used symbols will be written to disk.
 # For small to medium size projects (<1000 input files) the default value is
 # probably good enough. For larger projects a too small cache size can cause
 # doxygen to be busy swapping symbols to and from disk most of the time
 # causing a significant performance penality.
 # If the system has enough physical memory increasing the cache will improve the
 # performance by keeping more symbols in memory. Note that the value works on
 # a logarithmic scale so increasing the size by one will rougly double the
 # memory usage. The cache size is given by this formula:
 # 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
+# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
+# determine which symbols to keep in memory and which to flush to disk.
+# When the cache is full, less often used symbols will be written to disk.
+# For small to medium size projects (<1000 input files) the default value is
+# probably good enough. For larger projects a too small cache size can cause
+# doxygen to be busy swapping symbols to and from disk most of the time
+# causing a significant performance penalty.
+# If the system has enough physical memory increasing the cache will improve the
+# performance by keeping more symbols in memory. Note that the value works on
+# a logarithmic scale so increasing the size by one will roughly double the
+# memory usage. The cache size is given by this formula:
+# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
 # corresponding to a cache size of 2^16 = 65536 symbols
 …
 #---------------------------------------------------------------------------
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
+# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
+# documentation are documented, even if no documentation was available.
+# Private class members and static file members will be hidden unless
 # the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
 EXTRACT_ALL            = YES
 # If the EXTRACT_PRIVATE tag is set to YES all private members of a class
+# If the EXTRACT_PRIVATE tag is set to YES all private members of a class
 # will be included in the documentation.
 EXTRACT_PRIVATE        = YES
 # If the EXTRACT_STATIC tag is set to YES all static members of a file
+# If the EXTRACT_STATIC tag is set to YES all static members of a file
 # will be included in the documentation.
 EXTRACT_STATIC         = YES
 # If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs)
 # defined locally in source files will be included in the documentation.
+# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs)
+# defined locally in source files will be included in the documentation.
 # If set to NO only classes defined in header files are included.
 EXTRACT_LOCAL_CLASSES  = YES
 # This flag is only useful for Objective-C code. When set to YES local
 # methods, which are defined in the implementation section but not in
 # the interface are included in the documentation.
+# This flag is only useful for Objective-C code. When set to YES local
+# methods, which are defined in the implementation section but not in
+# the interface are included in the documentation.
 # If set to NO (the default) only methods in the interface are included.
 EXTRACT_LOCAL_METHODS  = NO
 # If this flag is set to YES, the members of anonymous namespaces will be
 # extracted and appear in the documentation as a namespace called
 # 'anonymous_namespace{file}', where file will be replaced with the base
 # name of the file that contains the anonymous namespace. By default
 # anonymous namespace are hidden.
+# If this flag is set to YES, the members of anonymous namespaces will be
+# extracted and appear in the documentation as a namespace called
+# 'anonymous_namespace{file}', where file will be replaced with the base
+# name of the file that contains the anonymous namespace. By default
+# anonymous namespaces are hidden.
 EXTRACT_ANON_NSPACES   = NO
 # If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all
 # undocumented members of documented classes, files or namespaces.
 # If set to NO (the default) these members will be included in the
 # various overviews, but no documentation section is generated.
+# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all
+# undocumented members of documented classes, files or namespaces.
+# If set to NO (the default) these members will be included in the
+# various overviews, but no documentation section is generated.
 # This option has no effect if EXTRACT_ALL is enabled.
 HIDE_UNDOC_MEMBERS     = NO
 # If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all
 # undocumented classes that are normally visible in the class hierarchy.
 # If set to NO (the default) these classes will be included in the various
+# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all
+# undocumented classes that are normally visible in the class hierarchy.
+# If set to NO (the default) these classes will be included in the various
 # overviews. This option has no effect if EXTRACT_ALL is enabled.
 HIDE_UNDOC_CLASSES     = NO
 # If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all
 # friend (class|struct|union) declarations.
 # If set to NO (the default) these declarations will be included in the
+# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all
+# friend (class|struct|union) declarations.
+# If set to NO (the default) these declarations will be included in the
 # documentation.
 HIDE_FRIEND_COMPOUNDS  = NO
 # If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any
 # documentation blocks found inside the body of a function.
 # If set to NO (the default) these blocks will be appended to the
+# If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any
+# documentation blocks found inside the body of a function.
+# If set to NO (the default) these blocks will be appended to the
 # function's detailed documentation block.
 HIDE_IN_BODY_DOCS      = NO
 # The INTERNAL_DOCS tag determines if documentation
 # that is typed after a \internal command is included. If the tag is set
 # to NO (the default) then the documentation will be excluded.
+# The INTERNAL_DOCS tag determines if documentation
+# that is typed after a \internal command is included. If the tag is set
+# to NO (the default) then the documentation will be excluded.
 # Set it to YES to include the internal documentation.
 INTERNAL_DOCS          = NO
 # If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate
 # file names in lower-case letters. If set to YES upper-case letters are also
 # allowed. This is useful if you have classes or files whose names only differ
 # in case and if your file system supports case sensitive file names. Windows
+# If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate
+# file names in lower-case letters. If set to YES upper-case letters are also
+# allowed. This is useful if you have classes or files whose names only differ
+# in case and if your file system supports case sensitive file names. Windows
 # and Mac users are advised to set this option to NO.
 CASE_SENSE_NAMES       = YES
 # If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen
 # will show members with their full class and namespace scopes in the
+# If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen
+# will show members with their full class and namespace scopes in the
 # documentation. If set to YES the scope will be hidden.
 HIDE_SCOPE_NAMES       = NO
 # If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen
 # will put a list of the files that are included by a file in the documentation
+# If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen
+# will put a list of the files that are included by a file in the documentation
 # of that file.
 SHOW_INCLUDE_FILES     = YES
+# If the INLINE_INFO tag is set to YES (the default) then a tag [inline]
+# If the FORCE_LOCAL_INCLUDES tag is set to YES then Doxygen
+# will list include files with double quotes in the documentation
+# rather than with sharp brackets.
+FORCE_LOCAL_INCLUDES   = NO
+# If the INLINE_INFO tag is set to YES (the default) then a tag [inline]
 # is inserted in the documentation for inline members.
 INLINE_INFO            = YES
 # If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen
 # will sort the (detailed) documentation of file and class members
 # alphabetically by member name. If set to NO the members will appear in
+# If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen
+# will sort the (detailed) documentation of file and class members
+# alphabetically by member name. If set to NO the members will appear in
 # declaration order.
 SORT_MEMBER_DOCS       = YES
 # If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the
 # brief documentation of file, namespace and class members alphabetically
 # by member name. If set to NO (the default) the members will appear in
+SORT_MEMBER_DOCS       = NO
+# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the
+# brief documentation of file, namespace and class members alphabetically
+# by member name. If set to NO (the default) the members will appear in
 # declaration order.
 SORT_BRIEF_DOCS        = NO
+# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the
+# hierarchy of group names into alphabetical order. If set to NO (the default)
+# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen
+# will sort the (brief and detailed) documentation of class members so that
+# constructors and destructors are listed first. If set to NO (the default)
+# the constructors will appear in the respective orders defined by
+# SORT_MEMBER_DOCS and SORT_BRIEF_DOCS.
+# This tag will be ignored for brief docs if SORT_BRIEF_DOCS is set to NO
+# and ignored for detailed docs if SORT_MEMBER_DOCS is set to NO.
+SORT_MEMBERS_CTORS_1ST = YES
+# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the
+# hierarchy of group names into alphabetical order. If set to NO (the default)
 # the group names will appear in their defined order.
 SORT_GROUP_NAMES       = NO
 # If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be
 # sorted by fully-qualified names, including namespaces. If set to
 # NO (the default), the class list will be sorted only by class name,
 # not including the namespace part.
 # Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
 # Note: This option applies only to the class list, not to the
+# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be
+# sorted by fully-qualified names, including namespaces. If set to
+# NO (the default), the class list will be sorted only by class name,
+# not including the namespace part.
+# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
+# Note: This option applies only to the class list, not to the
 # alphabetical list.
 SORT_BY_SCOPE_NAME     = NO
+# The GENERATE_TODOLIST tag can be used to enable (YES) or
+# disable (NO) the todo list. This list is created by putting \todo
+# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to
+# do proper type resolution of all parameters of a function it will reject a
+# match between the prototype and the implementation of a member function even
+# if there is only one candidate or it is obvious which candidate to choose
+# by doing a simple string match. By disabling STRICT_PROTO_MATCHING doxygen
+# will still accept a match between prototype and implementation in such cases.
+STRICT_PROTO_MATCHING  = NO
+# The GENERATE_TODOLIST tag can be used to enable (YES) or
+# disable (NO) the todo list. This list is created by putting \todo
 # commands in the documentation.
 GENERATE_TODOLIST      = YES
 # The GENERATE_TESTLIST tag can be used to enable (YES) or
 # disable (NO) the test list. This list is created by putting \test
+# The GENERATE_TESTLIST tag can be used to enable (YES) or
+# disable (NO) the test list. This list is created by putting \test
 # commands in the documentation.
 GENERATE_TESTLIST      = YES
 # The GENERATE_BUGLIST tag can be used to enable (YES) or
 # disable (NO) the bug list. This list is created by putting \bug
+# The GENERATE_BUGLIST tag can be used to enable (YES) or
+# disable (NO) the bug list. This list is created by putting \bug
 # commands in the documentation.
 GENERATE_BUGLIST       = YES
 # The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or
 # disable (NO) the deprecated list. This list is created by putting
+# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or
+# disable (NO) the deprecated list. This list is created by putting
 # \deprecated commands in the documentation.
 GENERATE_DEPRECATEDLIST= YES
 # The ENABLED_SECTIONS tag can be used to enable conditional
+# The ENABLED_SECTIONS tag can be used to enable conditional
 # documentation sections, marked by \if sectionname ... \endif.
 ENABLED_SECTIONS       =
 # The MAX_INITIALIZER_LINES tag determines the maximum number of lines
 # the initial value of a variable or define consists of for it to appear in
 # the documentation. If the initializer consists of more lines than specified
 # here it will be hidden. Use a value of 0 to hide initializers completely.
 # The appearance of the initializer of individual variables and defines in the
 # documentation can be controlled using \showinitializer or \hideinitializer
+ENABLED_SECTIONS       =
+# The MAX_INITIALIZER_LINES tag determines the maximum number of lines
+# the initial value of a variable or macro consists of for it to appear in
+# the documentation. If the initializer consists of more lines than specified
+# here it will be hidden. Use a value of 0 to hide initializers completely.
+# The appearance of the initializer of individual variables and macros in the
+# documentation can be controlled using \showinitializer or \hideinitializer
 # command in the documentation regardless of this setting.
 MAX_INITIALIZER_LINES  = 30
 # Set the SHOW_USED_FILES tag to NO to disable the list of files generated
 # at the bottom of the documentation of classes and structs. If set to YES the
+# Set the SHOW_USED_FILES tag to NO to disable the list of files generated
+# at the bottom of the documentation of classes and structs. If set to YES the
 # list will mention the files that were used to generate the documentation.
 SHOW_USED_FILES        = YES
 # If the sources in your project are distributed over multiple directories
 # then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy
+# If the sources in your project are distributed over multiple directories
+# then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy
 # in the documentation. The default is NO.
 SHOW_DIRECTORIES       = YES
 # Set the SHOW_FILES tag to NO to disable the generation of the Files page.
 # This will remove the Files entry from the Quick Index and from the
+# Set the SHOW_FILES tag to NO to disable the generation of the Files page.
+# This will remove the Files entry from the Quick Index and from the
 # Folder Tree View (if specified). The default is YES.
 SHOW_FILES             = YES
 # Set the SHOW_NAMESPACES tag to NO to disable the generation of the
 # Namespaces page.
 # This will remove the Namespaces entry from the Quick Index
+# Set the SHOW_NAMESPACES tag to NO to disable the generation of the
+# Namespaces page.
+# This will remove the Namespaces entry from the Quick Index
 # and from the Folder Tree View (if specified). The default is YES.
 SHOW_NAMESPACES        = YES
 # The FILE_VERSION_FILTER tag can be used to specify a program or script that
 # doxygen should invoke to get the current version for each file (typically from
 # the version control system). Doxygen will invoke the program by executing (via
 # popen()) the command <command> <input-file>, where <command> is the value of
 # the FILE_VERSION_FILTER tag, and <input-file> is the name of an input file
 # provided by doxygen. Whatever the program writes to standard output
+SHOW_NAMESPACES        = NO
+# The FILE_VERSION_FILTER tag can be used to specify a program or script that
+# doxygen should invoke to get the current version for each file (typically from
+# the version control system). Doxygen will invoke the program by executing (via
+# popen()) the command <command> <input-file>, where <command> is the value of
+# the FILE_VERSION_FILTER tag, and <input-file> is the name of an input file
+# provided by doxygen. Whatever the program writes to standard output
 # is used as the file version. See the manual for examples.
 FILE_VERSION_FILTER    =
 # The LAYOUT_FILE tag can be used to specify a layout file which will be parsed by
 # doxygen. The layout file controls the global structure of the generated output files
 # in an output format independent way. The create the layout file that represents
 # doxygen's defaults, run doxygen with the -l option. You can optionally specify a
 # file name after the option, if omitted DoxygenLayout.xml will be used as the name
 # of the layout file.
+FILE_VERSION_FILTER    =
+# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
+# by doxygen. The layout file controls the global structure of the generated
+# output files in an output format independent way. The create the layout file
+# that represents doxygen's defaults, run doxygen with the -l option.
+# You can optionally specify a file name after the option, if omitted
+# DoxygenLayout.xml will be used as the name of the layout file.
 LAYOUT_FILE            = layoutissm.xml
 …
 #---------------------------------------------------------------------------
 # The QUIET tag can be used to turn on/off the messages that are generated
+# The QUIET tag can be used to turn on/off the messages that are generated
 # by doxygen. Possible values are YES and NO. If left blank NO is used.
 QUIET                  = NO
 # The WARNINGS tag can be used to turn on/off the warning messages that are
 # generated by doxygen. Possible values are YES and NO. If left blank
+# The WARNINGS tag can be used to turn on/off the warning messages that are
+# generated by doxygen. Possible values are YES and NO. If left blank
 # NO is used.
 WARNINGS               = YES
 # If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings
 # for undocumented members. If EXTRACT_ALL is set to YES then this flag will
+# If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings
+# for undocumented members. If EXTRACT_ALL is set to YES then this flag will
 # automatically be disabled.
 WARN_IF_UNDOCUMENTED   = YES
 # If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for
 # potential errors in the documentation, such as not documenting some
 # parameters in a documented function, or documenting parameters that
+# If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for
+# potential errors in the documentation, such as not documenting some
+# parameters in a documented function, or documenting parameters that
 # don't exist or using markup commands wrongly.
 WARN_IF_DOC_ERROR      = YES
 # This WARN_NO_PARAMDOC option can be abled to get warnings for
 # functions that are documented, but have no documentation for their parameters
 # or return value. If set to NO (the default) doxygen will only warn about
 # wrong or incomplete parameter documentation, but not about the absence of
+# The WARN_NO_PARAMDOC option can be enabled to get warnings for
+# functions that are documented, but have no documentation for their parameters
+# or return value. If set to NO (the default) doxygen will only warn about
+# wrong or incomplete parameter documentation, but not about the absence of
 # documentation.
 WARN_NO_PARAMDOC       = NO
 # The WARN_FORMAT tag determines the format of the warning messages that
 # doxygen can produce. The string should contain the $file, $line, and $text
 # tags, which will be replaced by the file and line number from which the
 # warning originated and the warning text. Optionally the format may contain
 # $version, which will be replaced by the version of the file (if it could
+# The WARN_FORMAT tag determines the format of the warning messages that
+# doxygen can produce. The string should contain the $file, $line, and $text
+# tags, which will be replaced by the file and line number from which the
+# warning originated and the warning text. Optionally the format may contain
+# $version, which will be replaced by the version of the file (if it could
 # be obtained via FILE_VERSION_FILTER)
 WARN_FORMAT            = "$file:$line: $text"
 # The WARN_LOGFILE tag can be used to specify a file to which warning
 # and error messages should be written. If left blank the output is written
+# The WARN_LOGFILE tag can be used to specify a file to which warning
+# and error messages should be written. If left blank the output is written
 # to stderr.
 WARN_LOGFILE           =
+WARN_LOGFILE           =
 #---------------------------------------------------------------------------
 …
 #---------------------------------------------------------------------------
 # The INPUT tag can be used to specify the files and/or directories that contain
 # documented source files. You may enter file names like "myfile.cpp" or
 # directories like "/usr/src/myproject". Separate the files or directories
+# The INPUT tag can be used to specify the files and/or directories that contain
+# documented source files. You may enter file names like "myfile.cpp" or
+# directories like "/usr/src/myproject". Separate the files or directories
 # with spaces.
 INPUT                  =  ./
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
 # also the default input encoding. Doxygen uses libiconv (or the iconv built
 # into libc) for the transcoding. See http://www.gnu.org/software/libiconv for
+INPUT                  = ./src/c ./src/mex ./src/dox
+# This tag can be used to specify the character encoding of the source files
+# that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
+# also the default input encoding. Doxygen uses libiconv (or the iconv built
+# into libc) for the transcoding. See http://www.gnu.org/software/libiconv for
 # the list of possible encodings.
 INPUT_ENCODING         = UTF-8
+# If the value of the INPUT tag contains directories, you can use the
+# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
+# and *.h) to filter out the source-files in the directories. If left
+# blank the following patterns are tested:
+# *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx
+# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90
+FILE_PATTERNS          =  *.c *.cpp *.dox *.h
+# The RECURSIVE tag can be used to turn specify whether or not subdirectories
+# should be searched for input files as well. Possible values are YES and NO.
+# If the value of the INPUT tag contains directories, you can use the
+# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
+# and *.h) to filter out the source-files in the directories. If left
+# blank the following patterns are tested:
+# *.c *.cc *.cxx *.cpp *.c++ *.d *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh
+# *.hxx *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.dox *.py
+# *.f90 *.f *.for *.vhd *.vhdl
+FILE_PATTERNS          = *.c *.cpp *.dox *.h
+# The RECURSIVE tag can be used to turn specify whether or not subdirectories
+# should be searched for input files as well. Possible values are YES and NO.
 # If left blank NO is used.
 RECURSIVE              = YES
 # The EXCLUDE tag can be used to specify files and/or directories that should
 # excluded from the INPUT source files. This way you can easily exclude a
+# The EXCLUDE tag can be used to specify files and/or directories that should
+# excluded from the INPUT source files. This way you can easily exclude a
 # subdirectory from a directory tree whose root is specified with the INPUT tag.
 EXCLUDE                =
 # The EXCLUDE_SYMLINKS tag can be used select whether or not files or
 # directories that are symbolic links (a Unix filesystem feature) are excluded
+EXCLUDE                =
+# The EXCLUDE_SYMLINKS tag can be used select whether or not files or
+# directories that are symbolic links (a Unix file system feature) are excluded
 # from the input.
 EXCLUDE_SYMLINKS       = NO
 # If the value of the INPUT tag contains directories, you can use the
 # EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
 # certain files from those directories. Note that the wildcards are matched
 # against the file with absolute path, so to exclude all test directories
+# If the value of the INPUT tag contains directories, you can use the
+# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
+# certain files from those directories. Note that the wildcards are matched
+# against the file with absolute path, so to exclude all test directories
 # for example use the pattern */test/*
 EXCLUDE_PATTERNS       = */externalpackages/* */tests/* */examples/* */devpackages/* */cielo/* */cron/* */.svn* */CVS* */tests/* */.deps*
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
 # (namespaces, classes, functions, etc.) that should be excluded from the
 # output. The symbol name can be a fully qualified name, a word, or if the
 # wildcard * is used, a substring. Examples: ANamespace, AClass,
+EXCLUDE_PATTERNS       =  */Bamg/*
+# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
+# (namespaces, classes, functions, etc.) that should be excluded from the
+# output. The symbol name can be a fully qualified name, a word, or if the
+# wildcard * is used, a substring. Examples: ANamespace, AClass,
 # AClass::ANamespace, ANamespace::*Test
 EXCLUDE_SYMBOLS        =
 # The EXAMPLE_PATH tag can be used to specify one or more files or
 # directories that contain example code fragments that are included (see
+EXCLUDE_SYMBOLS        =
+# The EXAMPLE_PATH tag can be used to specify one or more files or
+# directories that contain example code fragments that are included (see
 # the \include command).
 EXAMPLE_PATH           =
 # If the value of the EXAMPLE_PATH tag contains directories, you can use the
 # EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
 # and *.h) to filter out the source-files in the directories. If left
+EXAMPLE_PATH           =
+# If the value of the EXAMPLE_PATH tag contains directories, you can use the
+# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
+# and *.h) to filter out the source-files in the directories. If left
 # blank all files are included.
 EXAMPLE_PATTERNS       =
 # If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
 # searched for input files to be used with the \include or \dontinclude
 # commands irrespective of the value of the RECURSIVE tag.
+EXAMPLE_PATTERNS       =
+# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
+# searched for input files to be used with the \include or \dontinclude
+# commands irrespective of the value of the RECURSIVE tag.
 # Possible values are YES and NO. If left blank NO is used.
 EXAMPLE_RECURSIVE      = NO
 # The IMAGE_PATH tag can be used to specify one or more files or
 # directories that contain image that are included in the documentation (see
+# The IMAGE_PATH tag can be used to specify one or more files or
+# directories that contain image that are included in the documentation (see
 # the \image command).
 IMAGE_PATH             =
 # The INPUT_FILTER tag can be used to specify a program that doxygen should
 # invoke to filter for each input file. Doxygen will invoke the filter program
 # by executing (via popen()) the command <filter> <input-file>, where <filter>
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
 # If FILTER_PATTERNS is specified, this tag will be
+IMAGE_PATH             =
+# The INPUT_FILTER tag can be used to specify a program that doxygen should
+# invoke to filter for each input file. Doxygen will invoke the filter program
+# by executing (via popen()) the command <filter> <input-file>, where <filter>
+# is the value of the INPUT_FILTER tag, and <input-file> is the name of an
+# input file. Doxygen will then use the output that the filter program writes
+# to standard output.
+# If FILTER_PATTERNS is specified, this tag will be
 # ignored.
 INPUT_FILTER           =
 # The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
 # basis.
 # Doxygen will compare the file name with each pattern and apply the
 # filter if there is a match.
 # The filters are a list of the form:
 # pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further
 # info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER
 # is applied to all files.
+INPUT_FILTER           =
+# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
+# basis.
+# Doxygen will compare the file name with each pattern and apply the
+# filter if there is a match.
+# The filters are a list of the form:
+# pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further
+# info on how filters are used. If FILTER_PATTERNS is empty or if
+# non of the patterns match the file name, INPUT_FILTER is applied.
 FILTER_PATTERNS        =
 # If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
 # INPUT_FILTER) will be used to filter the input files when producing source
+# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
+# INPUT_FILTER) will be used to filter the input files when producing source
 # files to browse (i.e. when SOURCE_BROWSER is set to YES).
 FILTER_SOURCE_FILES    = NO
+# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file
+# pattern. A pattern will override the setting for FILTER_PATTERN (if any)
+# and it is also possible to disable source filtering for a specific pattern
+# using *.ext= (so without naming a filter). This option only has effect when
+# FILTER_SOURCE_FILES is enabled.
+FILTER_SOURCE_PATTERNS =
 #---------------------------------------------------------------------------
 # configuration options related to source browsing
 #---------------------------------------------------------------------------
 # If the SOURCE_BROWSER tag is set to YES then a list of source files will
 # be generated. Documented entities will be cross-referenced with these sources.
 # Note: To get rid of all source code in the generated output, make sure also
+# If the SOURCE_BROWSER tag is set to YES then a list of source files will
+# be generated. Documented entities will be cross-referenced with these sources.
+# Note: To get rid of all source code in the generated output, make sure also
 # VERBATIM_HEADERS is set to NO.
 SOURCE_BROWSER         = YES
 # Setting the INLINE_SOURCES tag to YES will include the body
+# Setting the INLINE_SOURCES tag to YES will include the body
 # of functions and classes directly in the documentation.
 INLINE_SOURCES         = YES
 # Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct
 # doxygen to hide any special comment blocks from generated source code
+# Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct
+# doxygen to hide any special comment blocks from generated source code
 # fragments. Normal C and C++ comments will always remain visible.
 STRIP_CODE_COMMENTS    = YES
 # If the REFERENCED_BY_RELATION tag is set to YES
 # then for each documented function all documented
+# If the REFERENCED_BY_RELATION tag is set to YES
+# then for each documented function all documented
 # functions referencing it will be listed.
 REFERENCED_BY_RELATION = NO
 # If the REFERENCES_RELATION tag is set to YES
 # then for each documented function all documented entities
+# If the REFERENCES_RELATION tag is set to YES
+# then for each documented function all documented entities
 # called/used by that function will be listed.
 REFERENCES_RELATION    = NO
 # If the REFERENCES_LINK_SOURCE tag is set to YES (the default)
 # and SOURCE_BROWSER tag is set to YES, then the hyperlinks from
 # functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will
 # link to the source code.
+# If the REFERENCES_LINK_SOURCE tag is set to YES (the default)
+# and SOURCE_BROWSER tag is set to YES, then the hyperlinks from
+# functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will
+# link to the source code.
 # Otherwise they will link to the documentation.
 REFERENCES_LINK_SOURCE = YES
 # If the USE_HTAGS tag is set to YES then the references to source code
 # will point to the HTML generated by the htags(1) tool instead of doxygen
 # built-in source browser. The htags tool is part of GNU's global source
 # tagging system (see http://www.gnu.org/software/global/global.html). You
+# If the USE_HTAGS tag is set to YES then the references to source code
+# will point to the HTML generated by the htags(1) tool instead of doxygen
+# built-in source browser. The htags tool is part of GNU's global source
+# tagging system (see http://www.gnu.org/software/global/global.html). You
 # will need version 4.8.6 or higher.
 USE_HTAGS              = NO
 # If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen
 # will generate a verbatim copy of the header file for each class for
+# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen
+# will generate a verbatim copy of the header file for each class for
 # which an include is specified. Set to NO to disable this.
 …
 #---------------------------------------------------------------------------
 # If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index
 # of all compounds will be generated. Enable this if the project
+# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index
+# of all compounds will be generated. Enable this if the project
 # contains a lot of classes, structs, unions or interfaces.
 ALPHABETICAL_INDEX     = NO
 # If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then
 # the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns
+ALPHABETICAL_INDEX     = YES
+# If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then
+# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns
 # in which this list will be split (can be a number in the range [1..20])
 COLS_IN_ALPHA_INDEX    = 5
 # In case all classes in a project start with a common prefix, all
 # classes will be put under the same header in the alphabetical index.
 # The IGNORE_PREFIX tag can be used to specify one or more prefixes that
+COLS_IN_ALPHA_INDEX    = 4
+# In case all classes in a project start with a common prefix, all
+# classes will be put under the same header in the alphabetical index.
+# The IGNORE_PREFIX tag can be used to specify one or more prefixes that
 # should be ignored while generating the index headers.
 IGNORE_PREFIX          =
+IGNORE_PREFIX          =
 #---------------------------------------------------------------------------
 …
 #---------------------------------------------------------------------------
 # If the GENERATE_HTML tag is set to YES (the default) Doxygen will
+# If the GENERATE_HTML tag is set to YES (the default) Doxygen will
 # generate HTML output.
 GENERATE_HTML          = YES
 # The HTML_OUTPUT tag is used to specify where the HTML docs will be put.
 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
+# The HTML_OUTPUT tag is used to specify where the HTML docs will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be
 # put in front of it. If left blank `html' will be used as the default path.
 HTML_OUTPUT            = chtml
 # The HTML_FILE_EXTENSION tag can be used to specify the file extension for
 # each generated HTML page (for example: .htm,.php,.asp). If it is left blank
+# The HTML_FILE_EXTENSION tag can be used to specify the file extension for
+# each generated HTML page (for example: .htm,.php,.asp). If it is left blank
 # doxygen will generate files with .html extension.
 HTML_FILE_EXTENSION    = .html
+# The HTML_HEADER tag can be used to specify a personal HTML header for
+# each generated HTML page. If it is left blank doxygen will generate a
+# standard header.
+HTML_HEADER            =
+# The HTML_FOOTER tag can be used to specify a personal HTML footer for
+# each generated HTML page. If it is left blank doxygen will generate a
+# The HTML_HEADER tag can be used to specify a personal HTML header for
+# each generated HTML page. If it is left blank doxygen will generate a
+# standard header. Note that when using a custom header you are responsible
+# for the proper inclusion of any scripts and style sheets that doxygen
+# needs, which is dependent on the configuration options used.
+# It is adviced to generate a default header using "doxygen -w html
+# header.html footer.html stylesheet.css YourConfigFile" and then modify
+# that header. Note that the header is subject to change so you typically
+# have to redo this when upgrading to a newer version of doxygen or when changing the value of configuration settings such as GENERATE_TREEVIEW!
+HTML_HEADER            =
+# The HTML_FOOTER tag can be used to specify a personal HTML footer for
+# each generated HTML page. If it is left blank doxygen will generate a
 # standard footer.
 HTML_FOOTER            =
 # The HTML_STYLESHEET tag can be used to specify a user-defined cascading
 # style sheet that is used by each HTML page. It can be used to
 # fine-tune the look of the HTML output. If the tag is left blank doxygen
 # will generate a default style sheet. Note that doxygen will try to copy
 # the style sheet file to the HTML output directory, so don't put your own
+# The HTML_STYLESHEET tag can be used to specify a user-defined cascading
+# style sheet that is used by each HTML page. It can be used to
+# fine-tune the look of the HTML output. If the tag is left blank doxygen
+# will generate a default style sheet. Note that doxygen will try to copy
+# the style sheet file to the HTML output directory, so don't put your own
 # stylesheet in the HTML output directory as well, or it will be erased!
+HTML_STYLESHEET        =
+# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
+# files or namespaces will be aligned in HTML using tables. If set to
+HTML_STYLESHEET        =
+# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
+# other source files which should be copied to the HTML output directory. Note
+# that these files will be copied to the base HTML output directory. Use the
+# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# files. In the HTML_STYLESHEET file, use the file name only. Also note that
+# the files will be copied as-is; there are no commands or markers available.
+HTML_EXTRA_FILES       =
+# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output.
+# Doxygen will adjust the colors in the stylesheet and background images
+# according to this color. Hue is specified as an angle on a colorwheel,
+# see http://en.wikipedia.org/wiki/Hue for more information.
+# For instance the value 0 represents red, 60 is yellow, 120 is green,
+# 180 is cyan, 240 is blue, 300 purple, and 360 is red again.
+# The allowed range is 0 to 359.
+HTML_COLORSTYLE_HUE    = 220
+# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of
+# the colors in the HTML output. For a value of 0 the output will use
+# grayscales only. A value of 255 will produce the most vivid colors.
+HTML_COLORSTYLE_SAT    = 100
+# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to
+# the luminance component of the colors in the HTML output. Values below
+# 100 gradually make the output lighter, whereas values above 100 make
+# the output darker. The value divided by 100 is the actual gamma applied,
+# so 80 represents a gamma of 0.8, The value 220 represents a gamma of 2.2,
+# and 100 does not change the gamma.
+HTML_COLORSTYLE_GAMMA  = 80
+# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML
+# page will contain the date and time when the page was generated. Setting
+# this to NO can help when comparing the output of multiple runs.
+HTML_TIMESTAMP         = YES
+# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
+# files or namespaces will be aligned in HTML using tables. If set to
 # NO a bullet list will be used.
 HTML_ALIGN_MEMBERS     = YES
 # If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
 # documentation will contain sections that can be hidden and shown after the
 # page has loaded. For this to work a browser that supports
 # JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox
+# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
+# documentation will contain sections that can be hidden and shown after the
+# page has loaded. For this to work a browser that supports
+# JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox
 # Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari).
 HTML_DYNAMIC_SECTIONS  = NO
+# If the GENERATE_DOCSET tag is set to YES, additional index files
+# will be generated that can be used as input for Apple's Xcode 3
+# integrated development environment, introduced with OSX 10.5 (Leopard).
+# To create a documentation set, doxygen will generate a Makefile in the
+# HTML output directory. Running make will produce the docset in that
+# directory and running "make install" will install the docset in
+# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find
+# it at startup.
+# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more information.
+# If the GENERATE_DOCSET tag is set to YES, additional index files
+# will be generated that can be used as input for Apple's Xcode 3
+# integrated development environment, introduced with OSX 10.5 (Leopard).
+# To create a documentation set, doxygen will generate a Makefile in the
+# HTML output directory. Running make will produce the docset in that
+# directory and running "make install" will install the docset in
+# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find
+# it at startup.
+# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html
+# for more information.
 GENERATE_DOCSET        = NO
 # When GENERATE_DOCSET tag is set to YES, this tag determines the name of the
 # feed. A documentation feed provides an umbrella under which multiple
 # documentation sets from a single provider (such as a company or product suite)
+# When GENERATE_DOCSET tag is set to YES, this tag determines the name of the
+# feed. A documentation feed provides an umbrella under which multiple
+# documentation sets from a single provider (such as a company or product suite)
 # can be grouped.
 DOCSET_FEEDNAME        = "Doxygen generated docs"
 # When GENERATE_DOCSET tag is set to YES, this tag specifies a string that
 # should uniquely identify the documentation set bundle. This should be a
 # reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen
+# When GENERATE_DOCSET tag is set to YES, this tag specifies a string that
+# should uniquely identify the documentation set bundle. This should be a
+# reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen
 # will append .docset to the name.
 DOCSET_BUNDLE_ID       = org.doxygen.Project
+# If the GENERATE_HTMLHELP tag is set to YES, additional index files
+# will be generated that can be used as input for tools like the
+# Microsoft HTML help workshop to generate a compiled HTML help file (.chm)
+# When GENERATE_PUBLISHER_ID tag specifies a string that should uniquely identify
+# the documentation publisher. This should be a reverse domain-name style
+# string, e.g. com.mycompany.MyDocSet.documentation.
+DOCSET_PUBLISHER_ID    = org.doxygen.Publisher
+# The GENERATE_PUBLISHER_NAME tag identifies the documentation publisher.
+DOCSET_PUBLISHER_NAME  = Publisher
+# If the GENERATE_HTMLHELP tag is set to YES, additional index files
+# will be generated that can be used as input for tools like the
+# Microsoft HTML help workshop to generate a compiled HTML help file (.chm)
 # of the generated HTML documentation.
 GENERATE_HTMLHELP      = NO
 # If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can
 # be used to specify the file name of the resulting .chm file. You
 # can add a path in front of the file if the result should not be
+# If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can
+# be used to specify the file name of the resulting .chm file. You
+# can add a path in front of the file if the result should not be
 # written to the html output directory.
 CHM_FILE               =
 # If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can
 # be used to specify the location (absolute path including file name) of
 # the HTML help compiler (hhc.exe). If non-empty doxygen will try to run
+CHM_FILE               =
+# If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can
+# be used to specify the location (absolute path including file name) of
+# the HTML help compiler (hhc.exe). If non-empty doxygen will try to run
 # the HTML help compiler on the generated index.hhp.
 HHC_LOCATION           =
 # If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag
 # controls if a separate .chi index file is generated (YES) or that
+HHC_LOCATION           =
+# If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag
+# controls if a separate .chi index file is generated (YES) or that
 # it should be included in the master .chm file (NO).
 GENERATE_CHI           = NO
 # If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING
 # is used to encode HtmlHelp index (hhk), content (hhc) and project file
+# If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING
+# is used to encode HtmlHelp index (hhk), content (hhc) and project file
 # content.
 CHM_INDEX_ENCODING     =
 # If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag
 # controls whether a binary table of contents is generated (YES) or a
+CHM_INDEX_ENCODING     =
+# If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag
+# controls whether a binary table of contents is generated (YES) or a
 # normal table of contents (NO) in the .chm file.
 BINARY_TOC             = NO
 # The TOC_EXPAND flag can be set to YES to add extra items for group members
+# The TOC_EXPAND flag can be set to YES to add extra items for group members
 # to the contents of the HTML help documentation and to the tree view.
 TOC_EXPAND             = NO
 # If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and QHP_VIRTUAL_FOLDER
 # are set, an additional index file will be generated that can be used as input for
 # Qt's qhelpgenerator to generate a Qt Compressed Help (.qch) of the generated
 # HTML documentation.
+# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
+# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated
+# that can be used as input for Qt's qhelpgenerator to generate a
+# Qt Compressed Help (.qch) of the generated HTML documentation.
 GENERATE_QHP           = NO
 # If the QHG_LOCATION tag is specified, the QCH_FILE tag can
 # be used to specify the file name of the resulting .qch file.
+# If the QHG_LOCATION tag is specified, the QCH_FILE tag can
+# be used to specify the file name of the resulting .qch file.
 # The path specified is relative to the HTML output folder.
 QCH_FILE               =
 # The QHP_NAMESPACE tag specifies the namespace to use when generating
 # Qt Help Project output. For more information please see
+QCH_FILE               =
+# The QHP_NAMESPACE tag specifies the namespace to use when generating
+# Qt Help Project output. For more information please see
 # http://doc.trolltech.com/qthelpproject.html#namespace
 QHP_NAMESPACE          =
 # The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating
 # Qt Help Project output. For more information please see
+QHP_NAMESPACE          = org.doxygen.Project
+# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating
+# Qt Help Project output. For more information please see
 # http://doc.trolltech.com/qthelpproject.html#virtual-folders
 QHP_VIRTUAL_FOLDER     = doc
 # If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to add.
 # For more information please see
+# If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to
+# add. For more information please see
 # http://doc.trolltech.com/qthelpproject.html#custom-filters
+QHP_CUST_FILTER_NAME   =
+# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom filter to add.For more information please see
+# <a href="http://doc.trolltech.com/qthelpproject.html#custom-filters">Qt Help Project / Custom Filters</a>.
+QHP_CUST_FILTER_ATTRS  =
+# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this project's
+# filter section matches.
+# <a href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">Qt Help Project / Filter Attributes</a>.
+QHP_SECT_FILTER_ATTRS  =
+# If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can
+# be used to specify the location of Qt's qhelpgenerator.
+# If non-empty doxygen will try to run qhelpgenerator on the generated
+QHP_CUST_FILTER_NAME   =
+# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the
+# custom filter to add. For more information please see
+# <a href="http://doc.trolltech.com/qthelpproject.html#custom-filters">
+# Qt Help Project / Custom Filters</a>.
+QHP_CUST_FILTER_ATTRS  =
+# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
+# project's
+# filter section matches.
+# <a href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">
+# Qt Help Project / Filter Attributes</a>.
+QHP_SECT_FILTER_ATTRS  =
+# If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can
+# be used to specify the location of Qt's qhelpgenerator.
+# If non-empty doxygen will try to run qhelpgenerator on the generated
 # .qhp file.
+QHG_LOCATION           =
+# The DISABLE_INDEX tag can be used to turn on/off the condensed index at
+# top of each HTML page. The value NO (the default) enables the index and
+QHG_LOCATION           =
+# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files
+#  will be generated, which together with the HTML files, form an Eclipse help
+# plugin. To install this plugin and make it available under the help contents
+# menu in Eclipse, the contents of the directory containing the HTML and XML
+# files needs to be copied into the plugins directory of eclipse. The name of
+# the directory within the plugins directory should be the same as
+# the ECLIPSE_DOC_ID value. After copying Eclipse needs to be restarted before
+# the help appears.
+GENERATE_ECLIPSEHELP   = NO
+# A unique identifier for the eclipse help plugin. When installing the plugin
+# the directory name containing the HTML and XML files should also have
+# this name.
+ECLIPSE_DOC_ID         = org.doxygen.Project
+# The DISABLE_INDEX tag can be used to turn on/off the condensed index at
+# top of each HTML page. The value NO (the default) enables the index and
 # the value YES disables it.
 DISABLE_INDEX          = NO
+# This tag can be used to set the number of enum values (range [1..20])
+# that doxygen will group on one line in the generated HTML documentation.
+# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values
+# (range [0,1..20]) that doxygen will group on one line in the generated HTML
+# documentation. Note that a value of 0 will completely suppress the enum
+# values from appearing in the overview section.
 ENUM_VALUES_PER_LINE   = 4
+# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
+# structure should be generated to display hierarchical information.
+# If the tag value is set to FRAME, a side panel will be generated
+# containing a tree-like index structure (just like the one that
+# is generated for HTML Help). For this to work a browser that supports
+# JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+,
+# Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are
+# probably better off using the HTML help feature. Other possible values
+# for this tag are: HIERARCHIES, which will generate the Groups, Directories,
+# and Class Hierarchy pages using a tree view instead of an ordered list;
+# ALL, which combines the behavior of FRAME and HIERARCHIES; and NONE, which
+# disables this behavior completely. For backwards compatibility with previous
+# releases of Doxygen, the values YES and NO are equivalent to FRAME and NONE
+# respectively.
+GENERATE_TREEVIEW      = HIERARCHIES
+# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be
+# used to set the initial width (in pixels) of the frame in which the tree
+# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
+# structure should be generated to display hierarchical information.
+# If the tag value is set to YES, a side panel will be generated
+# containing a tree-like index structure (just like the one that
+# is generated for HTML Help). For this to work a browser that supports
+# JavaScript, DHTML, CSS and frames is required (i.e. any modern browser).
+# Windows users are probably better off using the HTML help feature.
+GENERATE_TREEVIEW      = NO
+# By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories,
+# and Class Hierarchy pages using a tree view instead of an ordered list.
+USE_INLINE_TREES       = NO
+# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be
+# used to set the initial width (in pixels) of the frame in which the tree
 # is shown.
 TREEVIEW_WIDTH         = 250
+# Use this tag to change the font size of Latex formulas included
+# as images in the HTML documentation. The default is 10. Note that
+# when you change the font size after a successful doxygen run you need
+# to manually remove any form_*.png images from the HTML output directory
+# When the EXT_LINKS_IN_WINDOW option is set to YES doxygen will open
+# links to external symbols imported via tag files in a separate window.
+EXT_LINKS_IN_WINDOW    = NO
+# Use this tag to change the font size of Latex formulas included
+# as images in the HTML documentation. The default is 10. Note that
+# when you change the font size after a successful doxygen run you need
+# to manually remove any form_*.png images from the HTML output directory
 # to force them to be regenerated.
 FORMULA_FONTSIZE       = 10
+# Use the FORMULA_TRANPARENT tag to determine whether or not the images
+# generated for formulas are transparent PNGs. Transparent PNGs are
+# not supported properly for IE 6.0, but are supported on all modern browsers.
+# Note that when changing this option you need to delete any form_*.png files
+# in the HTML output before the changes have effect.
+FORMULA_TRANSPARENT    = YES
+# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax
+# (see http://www.mathjax.org) which uses client side Javascript for the
+# rendering instead of using prerendered bitmaps. Use this if you do not
+# have LaTeX installed or if you want to formulas look prettier in the HTML
+# output. When enabled you also need to install MathJax separately and
+# configure the path to it using the MATHJAX_RELPATH option.
+USE_MATHJAX            = NO
+# When MathJax is enabled you need to specify the location relative to the
+# HTML output directory using the MATHJAX_RELPATH option. The destination
+# directory should contain the MathJax.js script. For instance, if the mathjax
+# directory is located at the same level as the HTML output directory, then
+# MATHJAX_RELPATH should be ../mathjax. The default value points to the
+# mathjax.org site, so you can quickly see the result without installing
+# MathJax, but it is strongly recommended to install a local copy of MathJax
+# before deployment.
+MATHJAX_RELPATH        = http://www.mathjax.org/mathjax
+# When the SEARCHENGINE tag is enabled doxygen will generate a search box
+# for the HTML output. The underlying search engine uses javascript
+# and DHTML and should work on any modern browser. Note that when using
+# HTML help (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets
+# (GENERATE_DOCSET) there is already a search function so this one should
+# typically be disabled. For large projects the javascript based search engine
+# can be slow, then enabling SERVER_BASED_SEARCH may provide a better solution.
+SEARCHENGINE           = YES
+# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
+# implemented using a PHP enabled web server instead of at the web client
+# using Javascript. Doxygen will generate the search PHP script and index
+# file to put on the web server. The advantage of the server
+# based approach is that it scales better to large projects and allows
+# full text search. The disadvantages are that it is more difficult to setup
+# and does not have live searching capabilities.
+SERVER_BASED_SEARCH    = NO
 #---------------------------------------------------------------------------
 # configuration options related to the LaTeX output
 #---------------------------------------------------------------------------
 # If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
+# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
 # generate Latex output.
 GENERATE_LATEX         = NO
 # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put.
 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
+# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be
 # put in front of it. If left blank `latex' will be used as the default path.
 LATEX_OUTPUT           = latex
 # The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
+# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
 # invoked. If left blank `latex' will be used as the default command name.
+# Note that when enabling USE_PDFLATEX this option is only used for
+# generating bitmaps for formulas in the HTML output, but not in the
+# Makefile that is written to the output directory.
 LATEX_CMD_NAME         = latex
 # The MAKEINDEX_CMD_NAME tag can be used to specify the command name to
 # generate index for LaTeX. If left blank `makeindex' will be used as the
+# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to
+# generate index for LaTeX. If left blank `makeindex' will be used as the
 # default command name.
 MAKEINDEX_CMD_NAME     = makeindex
 # If the COMPACT_LATEX tag is set to YES Doxygen generates more compact
 # LaTeX documents. This may be useful for small projects and may help to
+# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact
+# LaTeX documents. This may be useful for small projects and may help to
 # save some trees in general.
 COMPACT_LATEX          = NO
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, a4wide, letter, legal and
+# The PAPER_TYPE tag can be used to set the paper type that is used
+# by the printer. Possible values are: a4, letter, legal and
 # executive. If left blank a4wide will be used.
 PAPER_TYPE             = a4wide
 # The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX
+PAPER_TYPE             = letter
+# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX
 # packages that should be included in the LaTeX output.
 EXTRA_PACKAGES         =
 # The LATEX_HEADER tag can be used to specify a personal LaTeX header for
 # the generated latex document. The header should contain everything until
 # the first chapter. If it is left blank doxygen will generate a
+EXTRA_PACKAGES         =
+# The LATEX_HEADER tag can be used to specify a personal LaTeX header for
+# the generated latex document. The header should contain everything until
+# the first chapter. If it is left blank doxygen will generate a
 # standard header. Notice: only use this tag if you know what you are doing!
+LATEX_HEADER           =
+# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
+# is prepared for conversion to pdf (using ps2pdf). The pdf file will
+# contain links (just like the HTML output) instead of page references
+LATEX_HEADER           =
+# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for
+# the generated latex document. The footer should contain everything after
+# the last chapter. If it is left blank doxygen will generate a
+# standard footer. Notice: only use this tag if you know what you are doing!
+LATEX_FOOTER           =
+# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
+# is prepared for conversion to pdf (using ps2pdf). The pdf file will
+# contain links (just like the HTML output) instead of page references
 # This makes the output suitable for online browsing using a pdf viewer.
 PDF_HYPERLINKS         = YES
 # If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of
 # plain latex in the generated Makefile. Set this option to YES to get a
+# If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of
+# plain latex in the generated Makefile. Set this option to YES to get a
 # higher quality PDF documentation.
 USE_PDFLATEX           = YES
 # If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode.
 # command to the generated LaTeX files. This will instruct LaTeX to keep
 # running if errors occur, instead of asking the user for help.
+# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode.
+# command to the generated LaTeX files. This will instruct LaTeX to keep
+# running if errors occur, instead of asking the user for help.
 # This option is also used when generating formulas in HTML.
 LATEX_BATCHMODE        = NO
 # If LATEX_HIDE_INDICES is set to YES then doxygen will not
 # include the index chapters (such as File Index, Compound Index, etc.)
+# If LATEX_HIDE_INDICES is set to YES then doxygen will not
+# include the index chapters (such as File Index, Compound Index, etc.)
 # in the output.
 LATEX_HIDE_INDICES     = NO
+# If LATEX_SOURCE_CODE is set to YES then doxygen will include
+# source code with syntax highlighting in the LaTeX output.
+# Note that which sources are shown also depends on other settings
+# such as SOURCE_BROWSER.
+LATEX_SOURCE_CODE      = NO
 #---------------------------------------------------------------------------
 # configuration options related to the RTF output
 #---------------------------------------------------------------------------
 # If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output
 # The RTF output is optimized for Word 97 and may not look very pretty with
+# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output
+# The RTF output is optimized for Word 97 and may not look very pretty with
 # other RTF readers or editors.
 GENERATE_RTF           = NO
 # The RTF_OUTPUT tag is used to specify where the RTF docs will be put.
 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
+# The RTF_OUTPUT tag is used to specify where the RTF docs will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be
 # put in front of it. If left blank `rtf' will be used as the default path.
 RTF_OUTPUT             = rtf
 # If the COMPACT_RTF tag is set to YES Doxygen generates more compact
 # RTF documents. This may be useful for small projects and may help to
+# If the COMPACT_RTF tag is set to YES Doxygen generates more compact
+# RTF documents. This may be useful for small projects and may help to
 # save some trees in general.
 COMPACT_RTF            = NO
 # If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated
 # will contain hyperlink fields. The RTF file will
 # contain links (just like the HTML output) instead of page references.
 # This makes the output suitable for online browsing using WORD or other
 # programs which support those fields.
+# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated
+# will contain hyperlink fields. The RTF file will
+# contain links (just like the HTML output) instead of page references.
+# This makes the output suitable for online browsing using WORD or other
+# programs which support those fields.
 # Note: wordpad (write) and others do not support links.
 RTF_HYPERLINKS         = NO
 # Load stylesheet definitions from file. Syntax is similar to doxygen's
 # config file, i.e. a series of assignments. You only have to provide
+# Load stylesheet definitions from file. Syntax is similar to doxygen's
+# config file, i.e. a series of assignments. You only have to provide
 # replacements, missing definitions are set to their default value.
 RTF_STYLESHEET_FILE    =
 # Set optional variables used in the generation of an rtf document.
+RTF_STYLESHEET_FILE    =
+# Set optional variables used in the generation of an rtf document.
 # Syntax is similar to doxygen's config file.
 RTF_EXTENSIONS_FILE    =
+RTF_EXTENSIONS_FILE    =
 #---------------------------------------------------------------------------
 …
 #---------------------------------------------------------------------------
 # If the GENERATE_MAN tag is set to YES (the default) Doxygen will
+# If the GENERATE_MAN tag is set to YES (the default) Doxygen will
 # generate man pages
 GENERATE_MAN           = NO
 # The MAN_OUTPUT tag is used to specify where the man pages will be put.
 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
+# The MAN_OUTPUT tag is used to specify where the man pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be
 # put in front of it. If left blank `man' will be used as the default path.
 MAN_OUTPUT             = man
 # The MAN_EXTENSION tag determines the extension that is added to
+# The MAN_EXTENSION tag determines the extension that is added to
 # the generated man pages (default is the subroutine's section .3)
 MAN_EXTENSION          = .3
 # If the MAN_LINKS tag is set to YES and Doxygen generates man output,
 # then it will generate one additional man file for each entity
 # documented in the real man page(s). These additional files
 # only source the real man page, but without them the man command
+# If the MAN_LINKS tag is set to YES and Doxygen generates man output,
+# then it will generate one additional man file for each entity
+# documented in the real man page(s). These additional files
+# only source the real man page, but without them the man command
 # would be unable to find the correct page. The default is NO.
 …
 #---------------------------------------------------------------------------
 # If the GENERATE_XML tag is set to YES Doxygen will
 # generate an XML file that captures the structure of
+# If the GENERATE_XML tag is set to YES Doxygen will
+# generate an XML file that captures the structure of
 # the code including all documentation.
 GENERATE_XML           = NO
 # The XML_OUTPUT tag is used to specify where the XML pages will be put.
 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
+# The XML_OUTPUT tag is used to specify where the XML pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be
 # put in front of it. If left blank `xml' will be used as the default path.
 XML_OUTPUT             = xml
 # The XML_SCHEMA tag can be used to specify an XML schema,
 # which can be used by a validating XML parser to check the
+# The XML_SCHEMA tag can be used to specify an XML schema,
+# which can be used by a validating XML parser to check the
 # syntax of the XML files.
 XML_SCHEMA             =
 # The XML_DTD tag can be used to specify an XML DTD,
 # which can be used by a validating XML parser to check the
+XML_SCHEMA             =
+# The XML_DTD tag can be used to specify an XML DTD,
+# which can be used by a validating XML parser to check the
 # syntax of the XML files.
 XML_DTD                =
 # If the XML_PROGRAMLISTING tag is set to YES Doxygen will
 # dump the program listings (including syntax highlighting
 # and cross-referencing information) to the XML output. Note that
+XML_DTD                =
+# If the XML_PROGRAMLISTING tag is set to YES Doxygen will
+# dump the program listings (including syntax highlighting
+# and cross-referencing information) to the XML output. Note that
 # enabling this will significantly increase the size of the XML output.
 …
 #---------------------------------------------------------------------------
 # If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will
 # generate an AutoGen Definitions (see autogen.sf.net) file
 # that captures the structure of the code including all
 # documentation. Note that this feature is still experimental
+# If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will
+# generate an AutoGen Definitions (see autogen.sf.net) file
+# that captures the structure of the code including all
+# documentation. Note that this feature is still experimental
 # and incomplete at the moment.
 GENERATE_AUTOGEN_DEF   = YES
+GENERATE_AUTOGEN_DEF   = NO
 #---------------------------------------------------------------------------
 …
 #---------------------------------------------------------------------------
 # If the GENERATE_PERLMOD tag is set to YES Doxygen will
 # generate a Perl module file that captures the structure of
 # the code including all documentation. Note that this
 # feature is still experimental and incomplete at the
+# If the GENERATE_PERLMOD tag is set to YES Doxygen will
+# generate a Perl module file that captures the structure of
+# the code including all documentation. Note that this
+# feature is still experimental and incomplete at the
 # moment.
 GENERATE_PERLMOD       = NO
 # If the PERLMOD_LATEX tag is set to YES Doxygen will generate
 # the necessary Makefile rules, Perl scripts and LaTeX code to be able
+# If the PERLMOD_LATEX tag is set to YES Doxygen will generate
+# the necessary Makefile rules, Perl scripts and LaTeX code to be able
 # to generate PDF and DVI output from the Perl module output.
 PERLMOD_LATEX          = NO
 # If the PERLMOD_PRETTY tag is set to YES the Perl module output will be
 # nicely formatted so it can be parsed by a human reader.
 # This is useful
 # if you want to understand what is going on.
 # On the other hand, if this
 # tag is set to NO the size of the Perl module output will be much smaller
+# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be
+# nicely formatted so it can be parsed by a human reader.
+# This is useful
+# if you want to understand what is going on.
+# On the other hand, if this
+# tag is set to NO the size of the Perl module output will be much smaller
 # and Perl will parse it just the same.
 PERLMOD_PRETTY         = YES
 # The names of the make variables in the generated doxyrules.make file
 # are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX.
 # This is useful so different doxyrules.make files included by the same
+# The names of the make variables in the generated doxyrules.make file
+# are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX.
+# This is useful so different doxyrules.make files included by the same
 # Makefile don't overwrite each other's variables.
 PERLMOD_MAKEVAR_PREFIX =
 #---------------------------------------------------------------------------
 # Configuration options related to the preprocessor
 #---------------------------------------------------------------------------
 # If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will
 # evaluate all C-preprocessor directives found in the sources and include
+PERLMOD_MAKEVAR_PREFIX =
+#---------------------------------------------------------------------------
+# Configuration options related to the preprocessor
+#---------------------------------------------------------------------------
+# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will
+# evaluate all C-preprocessor directives found in the sources and include
 # files.
 ENABLE_PREPROCESSING   = YES
 # If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro
 # names in the source code. If set to NO (the default) only conditional
 # compilation will be performed. Macro expansion can be done in a controlled
+# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro
+# names in the source code. If set to NO (the default) only conditional
+# compilation will be performed. Macro expansion can be done in a controlled
 # way by setting EXPAND_ONLY_PREDEF to YES.
 MACRO_EXPANSION        = NO
 # If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES
 # then the macro expansion is limited to the macros specified with the
+# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES
+# then the macro expansion is limited to the macros specified with the
 # PREDEFINED and EXPAND_AS_DEFINED tags.
 EXPAND_ONLY_PREDEF     = NO
 # If the SEARCH_INCLUDES tag is set to YES (the default) the includes files
 # in the INCLUDE_PATH (see below) will be search if a #include is found.
+# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files
+# pointed to by INCLUDE_PATH will be searched when a #include is found.
 SEARCH_INCLUDES        = YES
 # The INCLUDE_PATH tag can be used to specify one or more directories that
 # contain include files that are not input files but should be processed by
+# The INCLUDE_PATH tag can be used to specify one or more directories that
+# contain include files that are not input files but should be processed by
 # the preprocessor.
 INCLUDE_PATH           =
 # You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
 # patterns (like *.h and *.hpp) to filter out the header-files in the
 # directories. If left blank, the patterns specified with FILE_PATTERNS will
+INCLUDE_PATH           =
+# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
+# patterns (like *.h and *.hpp) to filter out the header-files in the
+# directories. If left blank, the patterns specified with FILE_PATTERNS will
 # be used.
 INCLUDE_FILE_PATTERNS  =
 # The PREDEFINED tag can be used to specify one or more macro names that
 # are defined before the preprocessor is started (similar to the -D option of
 # gcc). The argument of the tag is a list of macros of the form: name
 # or name=definition (no spaces). If the definition and the = are
 # omitted =1 is assumed. To prevent a macro definition from being
 # undefined via #undef or recursively expanded use the := operator
+INCLUDE_FILE_PATTERNS  =
+# The PREDEFINED tag can be used to specify one or more macro names that
+# are defined before the preprocessor is started (similar to the -D option of
+# gcc). The argument of the tag is a list of macros of the form: name
+# or name=definition (no spaces). If the definition and the = are
+# omitted =1 is assumed. To prevent a macro definition from being
+# undefined via #undef or recursively expanded use the := operator
 # instead of the = operator.
 PREDEFINED             =
 # If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then
 # this tag can be used to specify a list of macro names that should be expanded.
 # The macro definition that is found in the sources will be used.
 # Use the PREDEFINED tag if you want to use a different macro definition.
+EXPAND_AS_DEFINED      =
+# If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then
 # doxygen's preprocessor will remove all function-like macros that are alone
 # on a line, have an all uppercase name, and do not end with a semicolon. Such
 # function macros are typically used for boiler-plate code, and will confuse
 # the parser if not removed.
+PREDEFINED             =
+# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then
+# this tag can be used to specify a list of macro names that should be expanded.
+# The macro definition that is found in the sources will be used.
+# Use the PREDEFINED tag if you want to use a different macro definition that
+# overrules the definition found in the source code.
+EXPAND_AS_DEFINED      =
+# If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then
+# doxygen's preprocessor will remove all references to function-like macros
+# that are alone on a line, have an all uppercase name, and do not end with a
+# semicolon, because these will confuse the parser if not removed.
 SKIP_FUNCTION_MACROS   = YES
 #---------------------------------------------------------------------------
 # Configuration::additions related to external references
 #---------------------------------------------------------------------------
 # The TAGFILES option can be used to specify one or more tagfiles.
 # Optionally an initial location of the external documentation
 # can be added for each tagfile. The format of a tag file without
 # this location is as follows:
+#
 # TAGFILES = file1 file2 ...
 # Adding location for the tag files is done as follows:
+#
 # TAGFILES = file1=loc1 "file2 = loc2" ...
 # where "loc1" and "loc2" can be relative or absolute paths or
 # URLs. If a location is present for each tag, the installdox tool
 # does not have to be run to correct the links.
 # Note that each tag file must have a unique name
 # (where the name does NOT include the path)
 # If a tag file is not located in the directory in which doxygen
+# Configuration::additions related to external references
+#---------------------------------------------------------------------------
+# The TAGFILES option can be used to specify one or more tagfiles.
+# Optionally an initial location of the external documentation
+# can be added for each tagfile. The format of a tag file without
+# this location is as follows:
+#
+# TAGFILES = file1 file2 ...
+# Adding location for the tag files is done as follows:
+#
+# TAGFILES = file1=loc1 "file2 = loc2" ...
+# where "loc1" and "loc2" can be relative or absolute paths or
+# URLs. If a location is present for each tag, the installdox tool
+# does not have to be run to correct the links.
+# Note that each tag file must have a unique name
+# (where the name does NOT include the path)
+# If a tag file is not located in the directory in which doxygen
 # is run, you must also specify the path to the tagfile here.
 TAGFILES               =
 # When a file name is specified after GENERATE_TAGFILE, doxygen will create
+TAGFILES               =
+# When a file name is specified after GENERATE_TAGFILE, doxygen will create
 # a tag file that is based on the input files it reads.
 GENERATE_TAGFILE       =
 # If the ALLEXTERNALS tag is set to YES all external classes will be listed
 # in the class index. If set to NO only the inherited external classes
+GENERATE_TAGFILE       =
+# If the ALLEXTERNALS tag is set to YES all external classes will be listed
+# in the class index. If set to NO only the inherited external classes
 # will be listed.
 ALLEXTERNALS           = NO
 # If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed
 # in the modules index. If set to NO, only the current project's groups will
+# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed
+# in the modules index. If set to NO, only the current project's groups will
 # be listed.
 EXTERNAL_GROUPS        = YES
 # The PERL_PATH should be the absolute path and name of the perl script
+# The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 …
 #---------------------------------------------------------------------------
+# Configuration options related to the dot tool
+#---------------------------------------------------------------------------
+# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will
+# generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base
+# or super classes. Setting the tag to NO turns the diagrams off. Note that
+# this option is superseded by the HAVE_DOT option below. This is only a
+# fallback. It is recommended to install and use dot, since it yields more
+# powerful graphs.
+# Configuration options related to the dot tool
+#---------------------------------------------------------------------------
+# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will
+# generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base
+# or super classes. Setting the tag to NO turns the diagrams off. Note that
+# this option also works with HAVE_DOT disabled, but it is recommended to
+# install and use dot, since it yields more powerful graphs.
 CLASS_DIAGRAMS         = YES
 # You can define message sequence charts within doxygen comments using the \msc
 # command. Doxygen will then run the mscgen tool (see
 # http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the
 # documentation. The MSCGEN_PATH tag allows you to specify the directory where
 # the mscgen tool resides. If left empty the tool is assumed to be found in the
+# You can define message sequence charts within doxygen comments using the \msc
+# command. Doxygen will then run the mscgen tool (see
+# http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the
+# documentation. The MSCGEN_PATH tag allows you to specify the directory where
+# the mscgen tool resides. If left empty the tool is assumed to be found in the
 # default search path.
 MSCGEN_PATH            =
 # If set to YES, the inheritance and collaboration graphs will hide
 # inheritance and usage relations if the target is undocumented
+MSCGEN_PATH            =
+# If set to YES, the inheritance and collaboration graphs will hide
+# inheritance and usage relations if the target is undocumented
 # or is not a class.
 HIDE_UNDOC_RELATIONS   = YES
 # If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
 # available from the path. This tool is part of Graphviz, a graph visualization
 # toolkit from AT&T and Lucent Bell Labs. The other options in this section
+# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
+# available from the path. This tool is part of Graphviz, a graph visualization
+# toolkit from AT&T and Lucent Bell Labs. The other options in this section
 # have no effect if this option is set to NO (the default)
 HAVE_DOT               = NO
+# By default doxygen will write a font called FreeSans.ttf to the output
+# directory and reference it in all dot files that doxygen generates. This
+# font does not include all possible unicode characters however, so when you need
+# these (or just want a differently looking font) you can specify the font name
+# using DOT_FONTNAME. You need need to make sure dot is able to find the font,
+# which can be done by putting it in a standard location or by setting the
+# DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory
+# The DOT_NUM_THREADS specifies the number of dot invocations doxygen is
+# allowed to run in parallel. When set to 0 (the default) doxygen will
+# base this on the number of processors available in the system. You can set it
+# explicitly to a value larger than 0 to get control over the balance
+# between CPU load and processing speed.
+DOT_NUM_THREADS        = 0
+# By default doxygen will write a font called Helvetica to the output
+# directory and reference it in all dot files that doxygen generates.
+# When you want a differently looking font you can specify the font name
+# using DOT_FONTNAME. You need to make sure dot is able to find the font,
+# which can be done by putting it in a standard location or by setting the
+# DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory
 # containing the font.
 DOT_FONTNAME           = FreeSans
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
+DOT_FONTNAME           = Helvetica
+# The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
 DOT_FONTSIZE           = 10
 # By default doxygen will tell dot to use the output directory to look for the
 # FreeSans.ttf font (which doxygen will put there itself). If you specify a
 # different font using DOT_FONTNAME you can set the path where dot
+# By default doxygen will tell dot to use the output directory to look for the
+# FreeSans.ttf font (which doxygen will put there itself). If you specify a
+# different font using DOT_FONTNAME you can set the path where dot
 # can find it using this tag.
 DOT_FONTPATH           =
 # If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen
 # will generate a graph for each documented class showing the direct and
 # indirect inheritance relations. Setting this tag to YES will force the
+DOT_FONTPATH           =
+# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen
+# will generate a graph for each documented class showing the direct and
+# indirect inheritance relations. Setting this tag to YES will force the
 # the CLASS_DIAGRAMS tag to NO.
 CLASS_GRAPH            = YES
 # If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen
 # will generate a graph for each documented class showing the direct and
 # indirect implementation dependencies (inheritance, containment, and
+# If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen
+# will generate a graph for each documented class showing the direct and
+# indirect implementation dependencies (inheritance, containment, and
 # class references variables) of the class with other documented classes.
 COLLABORATION_GRAPH    = YES
 # If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen
+# If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen
 # will generate a graph for groups, showing the direct groups dependencies
 GROUP_GRAPHS           = YES
 # If the UML_LOOK tag is set to YES doxygen will generate inheritance and
 # collaboration diagrams in a style similar to the OMG's Unified Modeling
+# If the UML_LOOK tag is set to YES doxygen will generate inheritance and
+# collaboration diagrams in a style similar to the OMG's Unified Modeling
 # Language.
 UML_LOOK               = YES
 # If set to YES, the inheritance and collaboration graphs will show the
+# If set to YES, the inheritance and collaboration graphs will show the
 # relations between templates and their instances.
 TEMPLATE_RELATIONS     = NO
 # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT
 # tags are set to YES then doxygen will generate a graph for each documented
 # file showing the direct and indirect include dependencies of the file with
+TEMPLATE_RELATIONS     = YES
+# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT
+# tags are set to YES then doxygen will generate a graph for each documented
+# file showing the direct and indirect include dependencies of the file with
 # other documented files.
 INCLUDE_GRAPH          = YES
 # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and
 # HAVE_DOT tags are set to YES then doxygen will generate a graph for each
 # documented header file showing the documented files that directly or
+# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and
+# HAVE_DOT tags are set to YES then doxygen will generate a graph for each
+# documented header file showing the documented files that directly or
 # indirectly include this file.
 INCLUDED_BY_GRAPH      = YES
 # If the CALL_GRAPH and HAVE_DOT options are set to YES then
 # doxygen will generate a call dependency graph for every global function
 # or class method. Note that enabling this option will significantly increase
 # the time of a run. So in most cases it will be better to enable call graphs
+# If the CALL_GRAPH and HAVE_DOT options are set to YES then
+# doxygen will generate a call dependency graph for every global function
+# or class method. Note that enabling this option will significantly increase
+# the time of a run. So in most cases it will be better to enable call graphs
 # for selected functions only using the \callgraph command.
 CALL_GRAPH             = NO
 # If the CALLER_GRAPH and HAVE_DOT tags are set to YES then
 # doxygen will generate a caller dependency graph for every global function
 # or class method. Note that enabling this option will significantly increase
 # the time of a run. So in most cases it will be better to enable caller
+# If the CALLER_GRAPH and HAVE_DOT tags are set to YES then
+# doxygen will generate a caller dependency graph for every global function
+# or class method. Note that enabling this option will significantly increase
+# the time of a run. So in most cases it will be better to enable caller
 # graphs for selected functions only using the \callergraph command.
 CALLER_GRAPH           = NO
 # If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen
 # will graphical hierarchy of all classes instead of a textual one.
+# If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen
+# will generate a graphical hierarchy of all classes instead of a textual one.
 GRAPHICAL_HIERARCHY    = YES
 # If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES
 # then doxygen will show the dependencies a directory has on other directories
 # in a graphical way. The dependency relations are determined by the #include
+# If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES
+# then doxygen will show the dependencies a directory has on other directories
+# in a graphical way. The dependency relations are determined by the #include
 # relations between the files in the directories.
 DIRECTORY_GRAPH        = YES
 # The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
 # generated by dot. Possible values are png, jpg, or gif
+# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
+# generated by dot. Possible values are svg, png, jpg, or gif.
 # If left blank png will be used.
 DOT_IMAGE_FORMAT       = png
 # The tag DOT_PATH can be used to specify the path where the dot tool can be
+# The tag DOT_PATH can be used to specify the path where the dot tool can be
 # found. If left blank, it is assumed the dot tool can be found in the path.
 DOT_PATH               =
 # The DOTFILE_DIRS tag can be used to specify one or more directories that
 # contain dot files that are included in the documentation (see the
+DOT_PATH               =
+# The DOTFILE_DIRS tag can be used to specify one or more directories that
+# contain dot files that are included in the documentation (see the
 # \dotfile command).
+DOTFILE_DIRS           =
+# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
+# nodes that will be shown in the graph. If the number of nodes in a graph
+# becomes larger than this value, doxygen will truncate the graph, which is
+# visualized by representing a node as a red box. Note that doxygen if the
+# number of direct children of the root node in a graph is already larger than
+# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note
+DOTFILE_DIRS           =
+# The MSCFILE_DIRS tag can be used to specify one or more directories that
+# contain msc files that are included in the documentation (see the
+# \mscfile command).
+MSCFILE_DIRS           =
+# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
+# nodes that will be shown in the graph. If the number of nodes in a graph
+# becomes larger than this value, doxygen will truncate the graph, which is
+# visualized by representing a node as a red box. Note that doxygen if the
+# number of direct children of the root node in a graph is already larger than
+# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note
 # that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
 DOT_GRAPH_MAX_NODES    = 15
 # The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the
 # graphs generated by dot. A depth value of 3 means that only nodes reachable
 # from the root by following a path via at most 3 edges will be shown. Nodes
 # that lay further from the root node will be omitted. Note that setting this
 # option to 1 or 2 may greatly reduce the computation time needed for large
 # code bases. Also note that the size of a graph can be further restricted by
+DOT_GRAPH_MAX_NODES    = 50
+# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the
+# graphs generated by dot. A depth value of 3 means that only nodes reachable
+# from the root by following a path via at most 3 edges will be shown. Nodes
+# that lay further from the root node will be omitted. Note that setting this
+# option to 1 or 2 may greatly reduce the computation time needed for large
+# code bases. Also note that the size of a graph can be further restricted by
 # DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
 MAX_DOT_GRAPH_DEPTH    = 5
 # Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
 # background. This is disabled by default, because dot on Windows does not
 # seem to support this out of the box. Warning: Depending on the platform used,
 # enabling this option may lead to badly anti-aliased labels on the edges of
+MAX_DOT_GRAPH_DEPTH    = 0
+# Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
+# background. This is disabled by default, because dot on Windows does not
+# seem to support this out of the box. Warning: Depending on the platform used,
+# enabling this option may lead to badly anti-aliased labels on the edges of
 # a graph (i.e. they become hard to read).
 DOT_TRANSPARENT        = NO
 # Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output
 # files in one run (i.e. multiple -o and -T options on the command line). This
 # makes dot run faster, but since only newer versions of dot (>1.8.10)
+# Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output
+# files in one run (i.e. multiple -o and -T options on the command line). This
+# makes dot run faster, but since only newer versions of dot (>1.8.10)
 # support this, this feature is disabled by default.
 DOT_MULTI_TARGETS      = NO
 # If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will
 # generate a legend page explaining the meaning of the various boxes and
+# If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will
+# generate a legend page explaining the meaning of the various boxes and
 # arrows in the dot generated graphs.
 GENERATE_LEGEND        = NO
 # If the DOT_CLEANUP tag is set to YES (the default) Doxygen will
 # remove the intermediate dot files that are used to generate
+# If the DOT_CLEANUP tag is set to YES (the default) Doxygen will
+# remove the intermediate dot files that are used to generate
 # the various graphs.
 DOT_CLEANUP            = YES
-#---------------------------------------------------------------------------
-# Options related to the search engine
-#---------------------------------------------------------------------------
-# The SEARCHENGINE tag specifies whether or not a search engine should be
-# used. If set to NO the values of all tags below this one will be ignored.
-SEARCHENGINE           = NO

issm/trunk/doxygen/doc_c/layoutissm.xml

-              r9303
+              r9312
   <!-- Navigation index tabs for HTML output -->
   <navindex>
     <tab type="mainpage" visible="yes" title="C code documentation"/>
     <tab type="pages" visible="yes" title=""/>
     <tab type="modules" visible="yes" title=""/>
+          <tab type="mainpage" visible="yes" title=""/>
+    <tab type="pages" visible="yes" title="" intro=""/>
+    <tab type="modules" visible="yes" title="" intro=""/>
     <tab type="namespaces" visible="yes" title="">
       <tab type="namespaces" visible="yes" title=""/>
       <tab type="namespacemembers" visible="yes" title=""/>
+      <tab type="namespaces" visible="yes" title="" intro=""/>
+      <tab type="namespacemembers" visible="yes" title="" intro=""/>
     </tab>
     <tab type="classes" visible="yes" title="">
       <tab type="classes" visible="yes" title=""/>
+      <tab type="classes" visible="yes" title="" intro=""/>
       <tab type="classindex" visible="$ALPHABETICAL_INDEX" title=""/>
       <tab type="hierarchy" visible="yes" title=""/>
       <tab type="classmembers" visible="yes" title=""/>
+      <tab type="hierarchy" visible="yes" title="" intro=""/>
+      <tab type="classmembers" visible="yes" title="" intro=""/>
     </tab>
     <tab type="files" visible="yes" title="">
       <tab type="files" visible="yes" title=""/>
       <tab type="globals" visible="yes" title=""/>
+      <tab type="files" visible="yes" title="" intro=""/>
+      <tab type="globals" visible="yes" title="" intro=""/>
     </tab>
     <tab type="dirs" visible="yes" title=""/>
     <tab type="examples" visible="yes" title=""/>
+    <tab type="dirs" visible="yes" title="" intro=""/>
+    <tab type="examples" visible="yes" title="" intro=""/>
   </navindex>
 …
     <memberdef>
       <pagedocs/>
+      <inlineclasses title=""/>
       <defines title=""/>
       <typedefs title=""/>

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