Index: /issm/trunk/src/c/Makefile.am
===================================================================
--- /issm/trunk/src/c/Makefile.am	(revision 8330)
+++ /issm/trunk/src/c/Makefile.am	(revision 8331)
@@ -1036,5 +1036,4 @@
 					./io/pfopen.cpp\
 					./io/pfclose.cpp\
-					./io/ParsePetscOptions.cpp\
 					./EnumDefinitions/EnumDefinitions.h\
 					./EnumDefinitions/EnumToModelField.cpp\
Index: /issm/trunk/src/c/modules/ModelProcessorx/Transient/UpdateElementsTransient.cpp
===================================================================
--- /issm/trunk/src/c/modules/ModelProcessorx/Transient/UpdateElementsTransient.cpp	(revision 8330)
+++ /issm/trunk/src/c/modules/ModelProcessorx/Transient/UpdateElementsTransient.cpp	(revision 8331)
@@ -22,69 +22,4 @@
 	/*Ok, let's go through forcings: */
 
-	/*Fetch data needed: */
-	IoModelFetchData(&iomodel->elements,NULL,NULL,iomodel_handle,"elements");
-	IoModelFetchData(&iomodel->elements_type,NULL,NULL,iomodel_handle,"elements_type");
-	IoModelFetchData(&iomodel->thickness,NULL,NULL,iomodel_handle,"thickness");
-	IoModelFetchData(&iomodel->thickness_coeff,NULL,NULL,iomodel_handle,"thickness_coeff");
-	IoModelFetchData(&iomodel->surface,NULL,NULL,iomodel_handle,"surface");
-	IoModelFetchData(&iomodel->bed,NULL,NULL,iomodel_handle,"bed");
-	IoModelFetchData(&iomodel->drag_coefficient,NULL,NULL,iomodel_handle,"drag_coefficient");
-	IoModelFetchData(&iomodel->drag_p,NULL,NULL,iomodel_handle,"drag_p");
-	IoModelFetchData(&iomodel->drag_q,NULL,NULL,iomodel_handle,"drag_q");
-	IoModelFetchData(&iomodel->elementoniceshelf,NULL,NULL,iomodel_handle,"elementoniceshelf");
-	IoModelFetchData(&iomodel->elementonwater,NULL,NULL,iomodel_handle,"elementonwater");
-	IoModelFetchData(&iomodel->rheology_B,NULL,NULL,iomodel_handle,"rheology_B");
-	IoModelFetchData(&iomodel->rheology_n,NULL,NULL,iomodel_handle,"rheology_n");
-	IoModelFetchData(&iomodel->vx,NULL,NULL,iomodel_handle,"vx");
-	IoModelFetchData(&iomodel->vy,NULL,NULL,iomodel_handle,"vy");
-	if(iomodel->gl_migration!=NoneEnum) IoModelFetchData(&iomodel->bathymetry,NULL,NULL,iomodel_handle,"bathymetry");
 
-	if (iomodel->dim==3){
-		IoModelFetchData(&iomodel->elementonbed,NULL,NULL,iomodel_handle,"elementonbed");
-		IoModelFetchData(&iomodel->elementonsurface,NULL,NULL,iomodel_handle,"elementonsurface");
-		IoModelFetchData(&iomodel->vz,NULL,NULL,iomodel_handle,"vz");
-		IoModelFetchData(&iomodel->accumulation_rate,NULL,NULL,iomodel_handle,"accumulation_rate");
-		IoModelFetchData(&iomodel->melting_rate,NULL,NULL,iomodel_handle,"melting_rate");
-		IoModelFetchData(&iomodel->nodeonstokes,NULL,NULL,iomodel_handle,"nodeonstokes");
-	}
-	if(iomodel->control_analysis){
-		IoModelFetchData(&iomodel->vx_obs,NULL,NULL,iomodel_handle,"vx_obs");
-		IoModelFetchData(&iomodel->vy_obs,NULL,NULL,iomodel_handle,"vy_obs");
-	}
-
-	/*Update elements: */
-	counter=0;
-	for (i=0;i<iomodel->numberofelements;i++){
-		if(iomodel->my_elements[i]){
-			element=(Element*)elements->GetObjectByOffset(counter);
-			element->Update(i,iomodel,analysis_counter,analysis_type); //we need i to index into elements.
-			counter++;
-		}
-	}
-cleanup_and_return:
-
-	/*Free data: */
-	xfree((void**)&iomodel->elements);
-	xfree((void**)&iomodel->elements_type);
-	xfree((void**)&iomodel->thickness);
-	xfree((void**)&iomodel->thickness_coeff);
-	xfree((void**)&iomodel->surface);
-	xfree((void**)&iomodel->bed);
-	xfree((void**)&iomodel->drag_coefficient);
-	xfree((void**)&iomodel->drag_p);
-	xfree((void**)&iomodel->drag_q);
-	xfree((void**)&iomodel->rheology_n);
-	xfree((void**)&iomodel->rheology_B);
-	xfree((void**)&iomodel->elementoniceshelf);
-	xfree((void**)&iomodel->elementonbed);
-	xfree((void**)&iomodel->elementonsurface);
-	xfree((void**)&iomodel->elementonwater);
-	xfree((void**)&iomodel->accumulation_rate);
-	xfree((void**)&iomodel->melting_rate);
-	xfree((void**)&iomodel->nodeonstokes);
-	xfree((void**)&iomodel->vx);
-	xfree((void**)&iomodel->vy);
-	xfree((void**)&iomodel->vz);
-	xfree((void**)&iomodel->vx_obs);
-	xfree((void**)&iomodel->vy_obs);
 }