Index: /issm/trunk/configs/astrid/linux64.sh
===================================================================
--- /issm/trunk/configs/astrid/linux64.sh	(revision 8167)
+++ /issm/trunk/configs/astrid/linux64.sh	(revision 8167)
@@ -0,0 +1,26 @@
+#!/bin/sh
+
+./configure \
+ --prefix=$ISSM_TIER \
+ --with-matlab-dir=$MATLAB_DIR \
+ --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-petsc-version=3 \
+ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" \
+ --with-petsc-arch=$ISSM_ARCH \
+ --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+ --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-plapack-lib="-L $ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+ --with-plapack-include="-I $ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
+ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scotch-dir="$ISSM_TIER/externalpackages/scotch/install" \
+ --with-chaco-dir="$ISSM_TIER/externalpackages/chaco/install" \
+ --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" \
+ --with-graphics-lib=/usr/lib64/libX11.so \
+ --with-cxxoptflags="-march=opteron -O2" \
+ --with-numthreads=32 \
+ --enable-debugging
Index: /issm/trunk/configs/astrid/linux64.sh.petsc2
===================================================================
--- /issm/trunk/configs/astrid/linux64.sh.petsc2	(revision 8167)
+++ /issm/trunk/configs/astrid/linux64.sh.petsc2	(revision 8167)
@@ -0,0 +1,3 @@
+#!/bin/sh
+
+./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-march=opteron -O2" --with-numthreads=32 --with-petsc-version=2  --with-scotch-dir=$ISSM_TIER/externalpackages/scotch/install --with-chaco-dir=$ISSM_TIER/externalpackages/chaco/install --enable-debugging
Index: /issm/trunk/configs/castor/altix64.sh.petsc2
===================================================================
--- /issm/trunk/configs/castor/altix64.sh.petsc2	(revision 8167)
+++ /issm/trunk/configs/castor/altix64.sh.petsc2	(revision 8167)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/usr/include  --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE"--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=2
Index: /issm/trunk/configs/castor/altix64.sh.petsc3
===================================================================
--- /issm/trunk/configs/castor/altix64.sh.petsc3	(revision 8167)
+++ /issm/trunk/configs/castor/altix64.sh.petsc3	(revision 8167)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/usr/include  --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=3
Index: /issm/trunk/configs/cosmos/linux32.sh.petsc2
===================================================================
--- /issm/trunk/configs/cosmos/linux32.sh.petsc2	(revision 8167)
+++ /issm/trunk/configs/cosmos/linux32.sh.petsc2	(revision 8167)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include  --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm  -lpthread  -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/  --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH  --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=2
Index: /issm/trunk/configs/cosmos/linux32.sh.petsc3
===================================================================
--- /issm/trunk/configs/cosmos/linux32.sh.petsc3	(revision 8167)
+++ /issm/trunk/configs/cosmos/linux32.sh.petsc3	(revision 8167)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include  --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm  -lpthread  -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/  --with-plapack-dir="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH  --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=3
Index: /issm/trunk/configs/macmathieu/macosx64.sh.petsc2
===================================================================
--- /issm/trunk/configs/macmathieu/macosx64.sh.petsc2	(revision 8167)
+++ /issm/trunk/configs/macmathieu/macosx64.sh.petsc2	(revision 8167)
@@ -0,0 +1,3 @@
+#!/bin/sh
+
+./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  --with-petsc-version=2 --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3 --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-cxxoptflags=" -DMATLAB_MEX_FILE -fno-common -no-cpp-precomp -fexceptions -arch i386  -DMX_COMPAT_32 -O3 -DNDEBUG -w" --with-numthreads=8
Index: /issm/trunk/configs/macmathieu/macosx64.sh.petsc3
===================================================================
--- /issm/trunk/configs/macmathieu/macosx64.sh.petsc3	(revision 8167)
+++ /issm/trunk/configs/macmathieu/macosx64.sh.petsc3	(revision 8167)
@@ -0,0 +1,24 @@
+#!/bin/sh
+
+./configure \
+	--prefix=$ISSM_TIER \
+	--with-matlab-dir=$MATLAB_DIR \
+	--with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+	--with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+	--with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  \
+	--with-petsc-version=3 \
+	--with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+	--with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \
+	--with-petsc-arch=$ISSM_ARCH \
+	--with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+	--with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+	--with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+	--with-plapack-include="-I $ISSM_TIER/externalpackages/petsc/install/include/ " \
+	--with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-fortran-lib="/usr/local/lib/libgfortran.a" \
+	--with-math-lib="/usr/lib/libm.dylib" \
+	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
+	--with-cxxoptflags=" -DMATLAB_MEX_FILE -fno-common -no-cpp-precomp -fexceptions -arch i386  -DMX_COMPAT_32 -O3 -DNDEBUG -w -Wwrite-strings" \
+	--with-numthreads=8
Index: /issm/trunk/configs/ogive/macosx32.sh.ogive
===================================================================
--- /issm/trunk/configs/ogive/macosx32.sh.ogive	(revision 8167)
+++ /issm/trunk/configs/ogive/macosx32.sh.ogive	(revision 8167)
@@ -0,0 +1,3 @@
+#!/bin/sh
+
+./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH  --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK"  --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH/INCLUDE"  --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/gfortran/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=2
Index: /issm/trunk/configs/ogive/macosx32.sh.petsc2
===================================================================
--- /issm/trunk/configs/ogive/macosx32.sh.petsc2	(revision 8167)
+++ /issm/trunk/configs/ogive/macosx32.sh.petsc2	(revision 8167)
@@ -0,0 +1,3 @@
+#!/bin/sh
+
+./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH  --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH -lPLAPACK"  --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH/INCLUDE"  --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=2
Index: /issm/trunk/configs/ogive/macosx32.sh.petsc3
===================================================================
--- /issm/trunk/configs/ogive/macosx32.sh.petsc3	(revision 8167)
+++ /issm/trunk/configs/ogive/macosx32.sh.petsc3	(revision 8167)
@@ -0,0 +1,3 @@
+#!/bin/sh
+
+./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH  --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include=$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=3
Index: /issm/trunk/configs/wineric/winxp32.sh.petsc2
===================================================================
--- /issm/trunk/configs/wineric/winxp32.sh.petsc2	(revision 8167)
+++ /issm/trunk/configs/wineric/winxp32.sh.petsc2	(revision 8167)
@@ -0,0 +1,6 @@
+#!/bin/sh
+
+
+#get configure.sh to pick up the intel compiler 
+
+./configure --prefix=$ISSM_TIER --with-parallel=no --with-vendor=intel  --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  --with-petsc-arch=$ISSM_ARCH  --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH  --with-petsc-version=2
Index: /issm/trunk/configs/wineric/winxp32.sh.petsc3
===================================================================
--- /issm/trunk/configs/wineric/winxp32.sh.petsc3	(revision 8167)
+++ /issm/trunk/configs/wineric/winxp32.sh.petsc3	(revision 8167)
@@ -0,0 +1,6 @@
+#!/bin/sh
+
+
+#get configure.sh to pick up the intel compiler 
+
+./configure --prefix=$ISSM_TIER --with-parallel=no --with-vendor=intel  --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  --with-petsc-arch=$ISSM_ARCH  --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH  --with-petsc-version=3