Index: /issm/trunk/scripts/automakererun.sh
===================================================================
--- /issm/trunk/scripts/automakererun.sh	(revision 6282)
+++ /issm/trunk/scripts/automakererun.sh	(revision 6283)
@@ -3,13 +3,39 @@
 #  archive.
 
+
+ ACLOCAL="$ISSM_TIER/devpackages/automake/install/bin/aclocal"
+AUTOCONF="$ISSM_TIER/devpackages/autoconf/install/bin/autoconf"
+AUTOHEAD="$ISSM_TIER/devpackages/autoconf/install/bin/autoheader"
+AUTOMAKE="$ISSM_TIER/devpackages/automake/install/bin/automake"
+
 echo "removing config.cach"
 rm -rf config.cach
 rm -rf aclocal.m4
-echo "Calling alocal"
-$ISSM_TIER/devpackages/automake/install/bin/aclocal -I m4
-echo "Calling autoconf"
-$ISSM_TIER/devpackages/autoconf/install/bin/autoconf
-echo "Calling autoheader"
-$ISSM_TIER/devpackages/autoconf/install/bin/autoheader
-echo "Calling automake"
-$ISSM_TIER/devpackages/automake/install/bin/automake -a
+
+if [ ! -f "$ACLOCAL" ]
+then echo "issm aclocal not found, calling default aclocal" 
+	aclocal -I m4
+else echo "Calling aclocal" 
+	$ACLOCAL -I m4
+fi
+
+if [ ! -f "$AUTOCONF" ]
+then echo "issm autoconf not found, calling default aclocal" 
+	autoconf
+else echo "Calling autoconf" 
+	$AUTOCONF
+fi
+
+if [ ! -f "$AUTOHEAD" ]
+then echo "issm autoheader not found, calling default aclocal" 
+	autoheader
+else echo "Calling autoheader" 
+	$AUTOHEAD
+fi
+
+if [ ! -f "$AUTOMAKE" ]
+then echo "issm automake  not found, calling default aclocal" 
+	automake
+else echo "Calling automake " 
+	$AUTOMAKE -a
+fi