Index: /issm/trunk/scripts/automakererun.sh
===================================================================
--- /issm/trunk/scripts/automakererun.sh	(revision 3363)
+++ /issm/trunk/scripts/automakererun.sh	(revision 3364)
@@ -3,7 +3,13 @@
 #  archive.
 
+echo "removing config.cach"
 rm -rf config.cach
-aclocal -I m4
-autoconf
-autoheader 
-automake -a 
+rm -rf aclocal.m4
+echo "Calling alocal"
+$ISSM_DIR/devpackages/automake/install/bin/aclocal -I m4
+echo "Calling autoconf"
+$ISSM_DIR/devpackages/autoconf/install/bin/autoconf
+echo "Calling autoheader"
+$ISSM_DIR/devpackages/autoconf/install/bin/autoheader
+echo "Calling automake"
+$ISSM_DIR/devpackages/automake/install/bin/automake -a