Index: sm/trunk/configs/altix64/altix64.sh
===================================================================
--- /issm/trunk/configs/altix64/altix64.sh	(revision 3224)
+++ 	(revision )
@@ -1,3 +1,0 @@
-#!/bin/csh
-
-./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/usr/include  --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-plapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so
Index: /issm/trunk/configs/altix64/altix64.sh.petsc2
===================================================================
--- /issm/trunk/configs/altix64/altix64.sh.petsc2	(revision 3225)
+++ /issm/trunk/configs/altix64/altix64.sh.petsc2	(revision 3225)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/usr/include  --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE"--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=2
Index: /issm/trunk/configs/altix64/altix64.sh.petsc3
===================================================================
--- /issm/trunk/configs/altix64/altix64.sh.petsc3	(revision 3225)
+++ /issm/trunk/configs/altix64/altix64.sh.petsc3	(revision 3225)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/usr/include  --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=3
Index: sm/trunk/configs/linux32-cosmos/linux32.sh
===================================================================
--- /issm/trunk/configs/linux32-cosmos/linux32.sh	(revision 3224)
+++ 	(revision )
@@ -1,3 +1,0 @@
-#!/bin/csh
-
-./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include  --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm  -lpthread  -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/  --with-plapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH  --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so
Index: /issm/trunk/configs/linux32-cosmos/linux32.sh.petsc2
===================================================================
--- /issm/trunk/configs/linux32-cosmos/linux32.sh.petsc2	(revision 3225)
+++ /issm/trunk/configs/linux32-cosmos/linux32.sh.petsc2	(revision 3225)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include  --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm  -lpthread  -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/  --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH  --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=2
Index: /issm/trunk/configs/linux32-cosmos/linux32.sh.petsc3
===================================================================
--- /issm/trunk/configs/linux32-cosmos/linux32.sh.petsc3	(revision 3225)
+++ /issm/trunk/configs/linux32-cosmos/linux32.sh.petsc3	(revision 3225)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include  --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm  -lpthread  -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/  --with-plapack-dir="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH  --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=3
Index: sm/trunk/configs/macosx32/macosx32.sh
===================================================================
--- /issm/trunk/configs/macosx32/macosx32.sh	(revision 3224)
+++ 	(revision )
@@ -1,3 +1,0 @@
-#!/bin/sh
-
-./configure --prefix=$ISSM_DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=$ISSM_DIR/externalpackages/mpich2/install/include  --with-mpi-lib=" $ISSM_DIR/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH  --with-plapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib"
Index: /issm/trunk/configs/macosx32/macosx32.sh.petsc2
===================================================================
--- /issm/trunk/configs/macosx32/macosx32.sh.petsc2	(revision 3225)
+++ /issm/trunk/configs/macosx32/macosx32.sh.petsc2	(revision 3225)
@@ -0,0 +1,3 @@
+#!/bin/sh
+
+./configure --prefix=$ISSM_DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=$ISSM_DIR/externalpackages/mpich2/install/include  --with-mpi-lib=" $ISSM_DIR/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH  --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH -lPLAPACK"  --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH/INCLUDE"  --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=2
Index: /issm/trunk/configs/macosx32/macosx32.sh.petsc3
===================================================================
--- /issm/trunk/configs/macosx32/macosx32.sh.petsc3	(revision 3225)
+++ /issm/trunk/configs/macosx32/macosx32.sh.petsc3	(revision 3225)
@@ -0,0 +1,3 @@
+#!/bin/sh
+
+./configure --prefix=$ISSM_DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=$ISSM_DIR/externalpackages/mpich2/install/include  --with-mpi-lib=" $ISSM_DIR/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH  --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include=$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH" --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=3
Index: sm/trunk/configs/pleiades/pleiades.sh
===================================================================
--- /issm/trunk/configs/pleiades/pleiades.sh	(revision 3224)
+++ 	(revision )
@@ -1,3 +1,0 @@
-#!/bin/csh
-
-./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ  --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread -lgfortran" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades
Index: /issm/trunk/configs/pleiades/pleiades.sh.petsc2
===================================================================
--- /issm/trunk/configs/pleiades/pleiades.sh.petsc2	(revision 3225)
+++ /issm/trunk/configs/pleiades/pleiades.sh.petsc2	(revision 3225)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ  --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread -lgfortran" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades --with-petsc-version=2
Index: /issm/trunk/configs/pleiades/pleiades.sh.petsc3
===================================================================
--- /issm/trunk/configs/pleiades/pleiades.sh.petsc3	(revision 3225)
+++ /issm/trunk/configs/pleiades/pleiades.sh.petsc3	(revision 3225)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ  --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread -lgfortran" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades --with-petsc-version=2
Index: sm/trunk/configs/winxp32/winxp32.sh
===================================================================
--- /issm/trunk/configs/winxp32/winxp32.sh	(revision 3224)
+++ 	(revision )
@@ -1,6 +1,0 @@
-#!/bin/sh
-
-
-#get configure.sh to pick up the intel compiler 
-
-./configure --prefix=$ISSM_DIR --with-parallel=no --with-vendor=intel  --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  --with-petsc-arch=$ISSM_ARCH  --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH 
Index: /issm/trunk/configs/winxp32/winxp32.sh.petsc2
===================================================================
--- /issm/trunk/configs/winxp32/winxp32.sh.petsc2	(revision 3225)
+++ /issm/trunk/configs/winxp32/winxp32.sh.petsc2	(revision 3225)
@@ -0,0 +1,6 @@
+#!/bin/sh
+
+
+#get configure.sh to pick up the intel compiler 
+
+./configure --prefix=$ISSM_DIR --with-parallel=no --with-vendor=intel  --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  --with-petsc-arch=$ISSM_ARCH  --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH  --with-petsc-version=2
Index: /issm/trunk/configs/winxp32/winxp32.sh.petsc3
===================================================================
--- /issm/trunk/configs/winxp32/winxp32.sh.petsc3	(revision 3225)
+++ /issm/trunk/configs/winxp32/winxp32.sh.petsc3	(revision 3225)
@@ -0,0 +1,6 @@
+#!/bin/sh
+
+
+#get configure.sh to pick up the intel compiler 
+
+./configure --prefix=$ISSM_DIR --with-parallel=no --with-vendor=intel  --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  --with-petsc-arch=$ISSM_ARCH  --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH  --with-petsc-version=3