Index: /issm/trunk/externalpackages/scotch/scotch.patch
===================================================================
--- /issm/trunk/externalpackages/scotch/scotch.patch	(revision 3167)
+++ /issm/trunk/externalpackages/scotch/scotch.patch	(revision 3168)
@@ -4,5 +4,5 @@
 diff -rc src/src/libscotch/arch.c new/src/libscotch/arch.c
 *** src/src/libscotch/arch.c	2008-09-27 07:48:01.000000000 -0700
---- new/src/libscotch/arch.c	2010-02-10 11:23:26.442951850 -0800
+--- new/src/libscotch/arch.c	2010-03-03 14:06:15.166926170 -0800
 ***************
 *** 173,187 ****
@@ -70,5 +70,5 @@
 diff -rc src/src/libscotch/arch_cmplt.c new/src/libscotch/arch_cmplt.c
 *** src/src/libscotch/arch_cmplt.c	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_cmplt.c	2010-02-10 11:23:26.449951858 -0800
+--- new/src/libscotch/arch_cmplt.c	2010-03-03 14:06:15.171926172 -0800
 ***************
 *** 90,99 ****
@@ -122,5 +122,5 @@
 diff -rc src/src/libscotch/arch_cmplt.h new/src/libscotch/arch_cmplt.h
 *** src/src/libscotch/arch_cmplt.h	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_cmplt.h	2010-02-10 11:23:26.455951865 -0800
+--- new/src/libscotch/arch_cmplt.h	2010-03-03 14:06:15.178926175 -0800
 ***************
 *** 87,93 ****
@@ -139,5 +139,5 @@
 diff -rc src/src/libscotch/arch_cmpltw.c new/src/libscotch/arch_cmpltw.c
 *** src/src/libscotch/arch_cmpltw.c	2008-08-27 14:22:22.000000000 -0700
---- new/src/libscotch/arch_cmpltw.c	2010-02-10 11:23:26.462951873 -0800
+--- new/src/libscotch/arch_cmpltw.c	2010-03-03 14:06:15.184926177 -0800
 ***************
 *** 200,211 ****
@@ -211,5 +211,5 @@
 diff -rc src/src/libscotch/arch_cmpltw.h new/src/libscotch/arch_cmpltw.h
 *** src/src/libscotch/arch_cmpltw.h	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_cmpltw.h	2010-02-10 11:23:26.469951882 -0800
+--- new/src/libscotch/arch_cmpltw.h	2010-03-03 14:06:15.189926179 -0800
 ***************
 *** 86,92 ****
@@ -228,5 +228,5 @@
 diff -rc src/src/libscotch/arch_deco.c new/src/libscotch/arch_deco.c
 *** src/src/libscotch/arch_deco.c	2008-09-28 06:35:27.000000000 -0700
---- new/src/libscotch/arch_deco.c	2010-02-10 11:23:26.476951890 -0800
+--- new/src/libscotch/arch_deco.c	2010-03-03 14:06:15.195926181 -0800
 ***************
 *** 211,217 ****
@@ -269,5 +269,5 @@
 diff -rc src/src/libscotch/arch_deco.h new/src/libscotch/arch_deco.h
 *** src/src/libscotch/arch_deco.h	2008-09-27 07:49:46.000000000 -0700
---- new/src/libscotch/arch_deco.h	2010-02-10 11:23:26.482951897 -0800
+--- new/src/libscotch/arch_deco.h	2010-03-03 14:06:15.201926184 -0800
 ***************
 *** 113,119 ****
@@ -286,5 +286,5 @@
 diff -rc src/src/libscotch/arch.h new/src/libscotch/arch.h
 *** src/src/libscotch/arch.h	2009-04-28 08:11:27.000000000 -0700
---- new/src/libscotch/arch.h	2010-02-10 11:23:26.488951904 -0800
+--- new/src/libscotch/arch.h	2010-03-03 14:06:15.207926186 -0800
 ***************
 *** 175,181 ****
@@ -303,5 +303,5 @@
 diff -rc src/src/libscotch/arch_hcub.c new/src/libscotch/arch_hcub.c
 *** src/src/libscotch/arch_hcub.c	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_hcub.c	2010-02-10 11:23:26.495951912 -0800
+--- new/src/libscotch/arch_hcub.c	2010-03-03 14:06:15.213926188 -0800
 ***************
 *** 88,95 ****
@@ -351,5 +351,5 @@
 diff -rc src/src/libscotch/arch_hcub.h new/src/libscotch/arch_hcub.h
 *** src/src/libscotch/arch_hcub.h	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_hcub.h	2010-02-10 11:23:26.501951919 -0800
+--- new/src/libscotch/arch_hcub.h	2010-03-03 14:06:15.219926191 -0800
 ***************
 *** 85,91 ****
@@ -368,5 +368,5 @@
 diff -rc src/src/libscotch/arch_mesh.c new/src/libscotch/arch_mesh.c
 *** src/src/libscotch/arch_mesh.c	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_mesh.c	2010-02-10 11:23:26.508951927 -0800
+--- new/src/libscotch/arch_mesh.c	2010-03-03 14:06:15.225926193 -0800
 ***************
 *** 96,103 ****
@@ -467,5 +467,5 @@
 diff -rc src/src/libscotch/arch_mesh.h new/src/libscotch/arch_mesh.h
 *** src/src/libscotch/arch_mesh.h	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_mesh.h	2010-02-10 11:23:26.514951934 -0800
+--- new/src/libscotch/arch_mesh.h	2010-03-03 14:06:15.232926196 -0800
 ***************
 *** 96,102 ****
@@ -498,5 +498,5 @@
 diff -rc src/src/libscotch/arch_tleaf.c new/src/libscotch/arch_tleaf.c
 *** src/src/libscotch/arch_tleaf.c	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_tleaf.c	2010-02-10 11:23:26.520951941 -0800
+--- new/src/libscotch/arch_tleaf.c	2010-03-03 14:06:15.238926198 -0800
 ***************
 *** 92,99 ****
@@ -556,5 +556,5 @@
 diff -rc src/src/libscotch/arch_tleaf.h new/src/libscotch/arch_tleaf.h
 *** src/src/libscotch/arch_tleaf.h	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_tleaf.h	2010-02-10 11:23:26.526951948 -0800
+--- new/src/libscotch/arch_tleaf.h	2010-03-03 14:06:15.244926201 -0800
 ***************
 *** 89,95 ****
@@ -573,5 +573,5 @@
 diff -rc src/src/libscotch/arch_torus.c new/src/libscotch/arch_torus.c
 *** src/src/libscotch/arch_torus.c	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_torus.c	2010-02-10 11:23:26.533951956 -0800
+--- new/src/libscotch/arch_torus.c	2010-03-03 14:06:15.251926203 -0800
 ***************
 *** 90,97 ****
@@ -672,5 +672,5 @@
 diff -rc src/src/libscotch/arch_torus.h new/src/libscotch/arch_torus.h
 *** src/src/libscotch/arch_torus.h	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/arch_torus.h	2010-02-10 11:23:26.540951964 -0800
+--- new/src/libscotch/arch_torus.h	2010-03-03 14:06:15.257926206 -0800
 ***************
 *** 96,102 ****
@@ -703,5 +703,5 @@
 diff -rc src/src/libscotch/common.c new/src/libscotch/common.c
 *** src/src/libscotch/common.c	2008-05-22 06:44:41.000000000 -0700
---- new/src/libscotch/common.c	2010-02-10 11:23:26.546951971 -0800
+--- new/src/libscotch/common.c	2010-03-03 14:06:15.263926208 -0800
 ***************
 *** 100,106 ****
@@ -722,5 +722,5 @@
 diff -rc src/src/libscotch/common.h new/src/libscotch/common.h
 *** src/src/libscotch/common.h	2009-02-06 14:20:55.000000000 -0800
---- new/src/libscotch/common.h	2010-02-10 11:23:26.552951978 -0800
+--- new/src/libscotch/common.h	2010-03-03 14:06:15.270926211 -0800
 ***************
 *** 66,71 ****
@@ -758,5 +758,5 @@
 diff -rc src/src/libscotch/dummysizes.c new/src/libscotch/dummysizes.c
 *** src/src/libscotch/dummysizes.c	2009-05-09 16:08:02.000000000 -0700
---- new/src/libscotch/dummysizes.c	2010-02-10 11:23:26.558951985 -0800
+--- new/src/libscotch/dummysizes.c	2010-03-03 14:06:15.276926213 -0800
 ***************
 *** 267,271 ****
@@ -771,5 +771,5 @@
 diff -rc src/src/libscotch/graph.c new/src/libscotch/graph.c
 *** src/src/libscotch/graph.c	2008-05-22 06:44:42.000000000 -0700
---- new/src/libscotch/graph.c	2010-02-10 11:23:26.564951992 -0800
+--- new/src/libscotch/graph.c	2010-03-03 14:06:15.283926216 -0800
 ***************
 *** 135,141 ****
@@ -794,5 +794,5 @@
 diff -rc src/src/libscotch/graph.h new/src/libscotch/graph.h
 *** src/src/libscotch/graph.h	2008-06-01 02:49:11.000000000 -0700
---- new/src/libscotch/graph.h	2010-02-10 11:23:26.570951999 -0800
+--- new/src/libscotch/graph.h	2010-03-03 14:06:15.289926218 -0800
 ***************
 *** 159,165 ****
@@ -811,5 +811,5 @@
 diff -rc src/src/libscotch/graph_io.c new/src/libscotch/graph_io.c
 *** src/src/libscotch/graph_io.c	2008-05-22 06:44:42.000000000 -0700
---- new/src/libscotch/graph_io.c	2010-02-10 11:23:26.577952008 -0800
+--- new/src/libscotch/graph_io.c	2010-03-03 14:06:15.297926222 -0800
 ***************
 *** 86,92 ****
@@ -1049,5 +1049,5 @@
 diff -rc src/src/libscotch/graph_io_scot.c new/src/libscotch/graph_io_scot.c
 *** src/src/libscotch/graph_io_scot.c	2008-05-22 06:44:42.000000000 -0700
---- new/src/libscotch/graph_io_scot.c	2010-02-10 11:23:26.584952016 -0800
+--- new/src/libscotch/graph_io_scot.c	2010-03-03 14:06:15.304926224 -0800
 ***************
 *** 89,95 ****
@@ -1066,5 +1066,5 @@
 diff -rc src/src/libscotch/library_arch.c new/src/libscotch/library_arch.c
 *** src/src/libscotch/library_arch.c	2008-05-22 06:44:42.000000000 -0700
---- new/src/libscotch/library_arch.c	2010-02-10 11:23:26.605952040 -0800
+--- new/src/libscotch/library_arch.c	2010-03-03 14:06:15.310926227 -0800
 ***************
 *** 120,128 ****
@@ -1101,5 +1101,5 @@
 diff -rc src/src/libscotch/library_arch_f.c new/src/libscotch/library_arch_f.c
 *** src/src/libscotch/library_arch_f.c	2008-05-22 06:44:42.000000000 -0700
---- new/src/libscotch/library_arch_f.c	2010-02-10 11:23:26.611952047 -0800
+--- new/src/libscotch/library_arch_f.c	2010-03-03 14:06:15.317926230 -0800
 ***************
 *** 121,127 ****
@@ -1118,5 +1118,5 @@
 diff -rc src/src/libscotch/library_error_exit.c new/src/libscotch/library_error_exit.c
 *** src/src/libscotch/library_error_exit.c	2009-01-20 00:36:33.000000000 -0800
---- new/src/libscotch/library_error_exit.c	2010-02-10 11:23:26.617952054 -0800
+--- new/src/libscotch/library_error_exit.c	2010-03-03 14:06:15.323926232 -0800
 ***************
 *** 114,119 ****
@@ -1193,5 +1193,5 @@
 diff -rc src/src/libscotch/library_graph.c new/src/libscotch/library_graph.c
 *** src/src/libscotch/library_graph.c	2008-05-22 07:28:12.000000000 -0700
---- new/src/libscotch/library_graph.c	2010-02-10 11:23:26.623952061 -0800
+--- new/src/libscotch/library_graph.c	2010-03-03 14:06:15.329926234 -0800
 ***************
 *** 137,143 ****
@@ -1238,5 +1238,5 @@
 diff -rc src/src/libscotch/library_graph_f.c new/src/libscotch/library_graph_f.c
 *** src/src/libscotch/library_graph_f.c	2008-05-22 06:44:43.000000000 -0700
---- new/src/libscotch/library_graph_f.c	2010-02-10 11:23:26.630952069 -0800
+--- new/src/libscotch/library_graph_f.c	2010-03-03 14:06:15.336926237 -0800
 ***************
 *** 136,142 ****
@@ -1255,5 +1255,5 @@
 diff -rc src/src/libscotch/library_graph_map.c new/src/libscotch/library_graph_map.c
 *** src/src/libscotch/library_graph_map.c	2008-09-28 04:04:05.000000000 -0700
---- new/src/libscotch/library_graph_map.c	2010-02-10 11:23:26.635952075 -0800
+--- new/src/libscotch/library_graph_map.c	2010-03-03 14:06:15.343926240 -0800
 ***************
 *** 182,192 ****
@@ -1280,5 +1280,5 @@
 diff -rc src/src/libscotch/library_graph_map_f.c new/src/libscotch/library_graph_map_f.c
 *** src/src/libscotch/library_graph_map_f.c	2008-06-28 03:44:26.000000000 -0700
---- new/src/libscotch/library_graph_map_f.c	2010-02-10 11:23:26.642952083 -0800
+--- new/src/libscotch/library_graph_map_f.c	2010-03-03 14:06:15.349926242 -0800
 ***************
 *** 183,189 ****
@@ -1297,5 +1297,5 @@
 diff -rc src/src/libscotch/library.h new/src/libscotch/library.h
 *** src/src/libscotch/library.h	2009-05-09 16:08:03.000000000 -0700
---- new/src/libscotch/library.h	2010-02-10 11:23:26.648952090 -0800
+--- new/src/libscotch/library.h	2010-03-03 14:06:15.356926245 -0800
 ***************
 *** 134,140 ****
@@ -1342,5 +1342,5 @@
 diff -rc src/src/libscotch/Makefile new/src/libscotch/Makefile
 *** src/src/libscotch/Makefile	2009-05-09 16:08:04.000000000 -0700
---- new/src/libscotch/Makefile	2010-02-19 15:46:06.253243103 -0800
+--- new/src/libscotch/Makefile	2010-03-03 14:41:00.434722658 -0800
 ***************
 *** 49,55 ****
@@ -1362,9 +1362,11 @@
 ***************
 *** 68,73 ****
---- 68,81 ----
+--- 68,83 ----
   					libptscotcherr$(LIB)								\
   					libptscotcherrexit$(LIB)
   
 + mexscotch			:	clean
++ 					$(MAKE) CFLAGS="$(CFLAGS)" CC="$(CCS)" CCD="$(CCS)" LDFLAGS="$(LDFLAGS)" SCOTCHLIB=scotch	\
++ 					dummysizes$(EXE)
 + 					$(MAKE) CFLAGS="$(CFLAGS) -DMATLAB -I${MATLAB_DIR}/extern/include" CC="$(CCS)" CCD="$(CCS)" LDFLAGS="$(LDFLAGS) -Wl,-rpath-link,${MATLAB_DIR}/bin/glnxa64 -L${MATLAB_DIR}/bin/glnxa64 -lmex -lmat" SCOTCHLIB=scotch	\
 + 					scotch.h						\
@@ -1379,5 +1381,5 @@
 diff -rc src/src/libscotch/mapping.h new/src/libscotch/mapping.h
 *** src/src/libscotch/mapping.h	2008-10-27 08:27:47.000000000 -0700
---- new/src/libscotch/mapping.h	2010-02-10 11:23:26.662952107 -0800
+--- new/src/libscotch/mapping.h	2010-03-03 14:06:15.371926251 -0800
 ***************
 *** 106,112 ****
@@ -1396,5 +1398,5 @@
 diff -rc src/src/libscotch/mapping_io.c new/src/libscotch/mapping_io.c
 *** src/src/libscotch/mapping_io.c	2008-05-22 06:44:43.000000000 -0700
---- new/src/libscotch/mapping_io.c	2010-02-10 11:23:26.667952113 -0800
+--- new/src/libscotch/mapping_io.c	2010-03-03 14:06:15.377926253 -0800
 ***************
 *** 199,204 ****
@@ -1485,5 +1487,5 @@
 diff -rc src/src/libscotch/mesh_io_scot.c new/src/libscotch/mesh_io_scot.c
 *** src/src/libscotch/mesh_io_scot.c	2008-05-22 06:44:43.000000000 -0700
---- new/src/libscotch/mesh_io_scot.c	2010-02-10 11:23:26.673952120 -0800
+--- new/src/libscotch/mesh_io_scot.c	2010-03-03 14:06:15.384926256 -0800
 ***************
 *** 85,91 ****
@@ -1502,5 +1504,5 @@
 diff -rc src/src/Makefile new/src/Makefile
 *** src/src/Makefile	2008-09-15 05:50:51.000000000 -0700
---- new/src/Makefile	2010-02-10 11:23:26.678952125 -0800
+--- new/src/Makefile	2010-03-03 14:06:15.389926258 -0800
 ***************
 *** 97,102 ****
@@ -1520,5 +1522,5 @@
 diff -rc src/src/scotch/Makefile new/src/scotch/Makefile
 *** src/src/scotch/Makefile	2009-04-27 02:19:43.000000000 -0700
---- new/src/scotch/Makefile	2010-02-19 15:47:58.973374370 -0800
+--- new/src/scotch/Makefile	2010-03-03 14:06:15.395926260 -0800
 ***************
 *** 49,59 ****
Index: /issm/trunk/externalpackages/scotch/scotch_jes_notes.txt
===================================================================
--- /issm/trunk/externalpackages/scotch/scotch_jes_notes.txt	(revision 3167)
+++ /issm/trunk/externalpackages/scotch/scotch_jes_notes.txt	(revision 3168)
@@ -278,5 +278,5 @@
 2/08/10:
 
-- modified all changes to use the MATLAB compiler conditional, so that both mex and stand-alone modules could be built simultaneously
+- modified all source code changes to use the MATLAB compiler conditional, so that both mex and stand-alone modules could be built simultaneously
 
 2/10/10:
@@ -285,2 +285,6 @@
 - removed Matlab-specific switches from CFLAGS and LDFLAGS and added them to mexscotch target
 
+3/03/10:
+
+- separated dummysizes within mexscotch target in libscotch/Makefile so that it is built without the matlab flag, includes, and libraries (matlab 7.8 would fail even though matlab 7.6 was okay).
+