Index: /issm/trunk/externalpackages/meshpart/meshpart_README.txt
===================================================================
--- /issm/trunk/externalpackages/meshpart/meshpart_README.txt	(revision 2963)
+++ /issm/trunk/externalpackages/meshpart/meshpart_README.txt	(revision 2963)
@@ -0,0 +1,32 @@
+meshpartdist.tar (2/08/02)
+http://www.cerfacs.fr/algor/Softs/MESHPART/
+
+
+[jschierm@astrid meshpart]$ diff fiedler_old.m fiedler.m
+61c61,65  [update for current Matlab]
+<     p = symmmd(L);
+---
+>     if exist('symamd')
+>         p = symamd(L);
+>     else
+>         p = symmmd(L);
+>     end
+
+
+[jschierm@astrid meshpart]$ diff chaco_old.m chaco.m
+145c145,146  [fix error -- how did this ever run?]
+<     vwgts = full(Adiag);
+---
+> %     vwgts = full(Adiag);
+>     vwgts = full(diag(A));
+
+
+[jschierm@astrid meshpart]$ diff meshdemo_old.m meshdemo.m
+100c100  [enable mlchaco in demo]
+< usechaco = 0;
+---
+> usechaco = 1;
+
+
+See chaco/mlchaco_README.txt for specific notes on mlchaco.
+
Index: /issm/trunk/externalpackages/meshpart/meshpart_notes_jes.txt
===================================================================
--- /issm/trunk/externalpackages/meshpart/meshpart_notes_jes.txt	(revision 2963)
+++ /issm/trunk/externalpackages/meshpart/meshpart_notes_jes.txt	(revision 2963)
@@ -0,0 +1,119 @@
+7/13/09:
+
+[jschierm@astrid meshpart]$ diff fiedler_old.m fiedler.m
+61c61,65
+<     p = symmmd(L);
+---
+>     if exist('symamd')
+>         p = symamd(L);
+>     else
+>         p = symmmd(L);
+>     end
+
+
+7/15/09:
+
+[jschierm@astrid meshpart]$ diff meshdemo_old.m meshdemo.m
+100c100  [enable mlchaco]
+< usechaco = 0;
+---
+> usechaco = 1;
+
+
+[jschierm@astrid chaco]$ diff Makefile_old Makefile
+27c27,28
+< MATLAB =        /usr/local/libexec/matlab
+---
+> #MATLAB =        /usr/local/libexec/matlab
+> MATLAB =        /usr/local/matlab780
+30c31,32
+< CHACO =         ../../Chaco-2.0/code
+---
+> #CHACO =         ../../Chaco-2.0/code
+> CHACO =         ../../Chaco-2.2/code
+34,35c36,37
+< #CC =            gcc 
+< CC =            cc 
+---
+> CC =            gcc 
+> #CC =            cc 
+39,40c41,44
+< AR =             /usr/ccs/bin/ar rcv   # for solaris 2
+< RANLIB =         /usr/ccs/bin/ranlib   # for solaris 2
+---
+> #AR =             /usr/ccs/bin/ar rcv   # for solaris 2
+> AR =             /usr/bin/ar rcv   # for solaris 2
+> #RANLIB =         /usr/ccs/bin/ranlib   # for solaris 2
+> RANLIB =         /usr/bin/ranlib   # for solaris 2
+91a96,97  [unresolved symbol]
+>               ${CHACO}/klvspiff/flatten.c \
+>               ${CHACO}/klvspiff/flow.c \
+99a106  [unresolved symbol]
+>               ${CHACO}/coarsen/makeccoords.c \
+102a110  [unresolved symbol]
+>               ${CHACO}/coarsen/makefgraph.c \
+108a117  [unresolved symbol]
+>               ${CHACO}/coarsen/maxmatch5.c \
+254a264,267
+> #mlchaco:     ${MLFILES.c} chaco.a Makefile
+> #             mex -V4 -output mlchaco ${MLFILES.c} chaco.a -I${CHACO}/main
+> #             mv mlchaco.mex* ${DEST_DIR}
+> 
+256c269
+<               mex -V4 -output mlchaco ${MLFILES.c} chaco.a -I${CHACO}/main
+---
+>               mex -output mlchaco -largeArrayDims ${MLFILES.c} chaco.a -I${CHACO}/main
+
+
+[jschierm@astrid chaco]$ diff mlchaco_old.c mlchaco.c
+34a35
+> #include <time.h>      /*  CLOCKS_PER_SEC  */
+56,61c57,62
+< void mexFunction(    
+<     int         nlhs,           /* number of expected outputs */
+<     Matrix      *plhs[],        /* matrix pointer array returning outputs */
+<     int         nrhs,           /* number of inputs */
+<     Matrix      *prhs[]         /* matrix pointer array for inputs */
+<     )
+---
+> void mexFunction(
+>     int           nlhs,           /* number of expected outputs */
+>     mxArray       *plhs[],        /* array of pointers to output arguments
+>     */
+>     int           nrhs,           /* number of inputs */
+>     const mxArray *prhs[]         /* array of pointers to input arguments */
+> )
+87a89
+>     mwIndex *mwstart,*mwadjacency;
+104c106,110
+<     start = mxGetJc(A_in);
+---
+> /*    start = mxGetJc(A_in);*/
+>     mwstart = mxGetJc(A_in);
+>     start = mxMalloc((mxGetN(A_in)+1)*sizeof(int));
+>     for (i=0; i<(mxGetN(A_in)+1); i++)
+>         start[i]= (int)mwstart[i];
+106c112,116
+<     adjacency = mxGetIr(A_in);
+---
+> /*    adjacency = mxGetIr(A_in);*/
+>     mwadjacency = mxGetIr(A_in);
+>     adjacency = mxMalloc(mxGetNzmax(A_in)*sizeof(int));
+>     for (i=0; i<mxGetNzmax(A_in); i++)
+>         adjacency[i]= (int)mwadjacency[i];
+169c179
+<       plhs [1] = mxCreateFull (1, 1, REAL) ;
+---
+>       plhs [1] = mxCreateDoubleMatrix (1, 1, mxREAL) ;
+173c183
+<       ((double) CLK_TCK) ;
+---
+>       ((double) CLOCKS_PER_SEC) ;
+179c189
+<         map_out = mxCreateFull(1,nvtxs,REAL);
+---
+>         map_out = mxCreateDoubleMatrix(1,nvtxs,mxREAL);
+185a196,197
+>     if (start != NULL) mxFree((char *) start);
+>     if (adjacency != NULL) mxFree((char *) adjacency);
+
Index: /issm/trunk/externalpackages/meshpart/metismex_README.txt
===================================================================
--- /issm/trunk/externalpackages/meshpart/metismex_README.txt	(revision 2963)
+++ /issm/trunk/externalpackages/meshpart/metismex_README.txt	(revision 2963)
@@ -0,0 +1,31 @@
+metismex.c
+http://www.cs.ubc.ca/~rbridson/download/metismex.c
+
+
+[jschierm@astrid Lib]$ diff /u/wilkes-r1b/jschierm/issm/trunk/externalpackages/metis/install/Lib/proto.h .
+233,234c233,237
+< extern "C" void METIS_PartMeshNodal(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *);
+< extern "C" void METIS_PartMeshDual(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *);
+---
+> /*extern "C" void METIS_PartMeshNodal(int *, int *, idxtype *, int *, int *, > int *, int *, idxtype *, idxtype *);*/
+> /*extern "C" void METIS_PartMeshDual(int *, int *, idxtype *, int *, int *, > int *, int *, idxtype *, idxtype *);*/
+> 
+> void METIS_PartMeshNodal(int *, int *, idxtype *, int *, int *, int *, int > *, idxtype *, idxtype *);
+> void METIS_PartMeshDual(int *, int *, idxtype *, int *, int *, int *, int *, > idxtype *, idxtype *);
+462c465
+< int log2(int);
+---
+> /*int log2(int);*/
+
+
+[jschierm@astrid meshpart]$ diff metismex_old.c metismex.c
+95c95,97  [update for current Matlab]
+<     int i, j, jbar, n, nnz, *jc, *ir;
+---
+> /*    int i, j, jbar, n, nnz, *jc, *ir;*/
+>     int i, j, jbar, n, nnz;
+>     mwIndex *jc, *ir;
+
+
+[jschierm@astrid meshpart]$ mex -I/u/wilkes-r1b/jschierm/issm/trunk/externalpackages/metis/install/Lib -L/u/wilkes-r1b/jschierm/issm/trunk/externalpackages/metis/install -lmetis -largeArrayDims metismex.c
+
Index: /issm/trunk/externalpackages/meshpart/metismex_notes_jes.txt
===================================================================
--- /issm/trunk/externalpackages/meshpart/metismex_notes_jes.txt	(revision 2963)
+++ /issm/trunk/externalpackages/meshpart/metismex_notes_jes.txt	(revision 2963)
@@ -0,0 +1,24 @@
+7/14/09:
+
+proto.h
+
+/* meshpart.c */
+/*extern "C" void METIS_PartMeshNodal(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *);*/
+/*extern "C" void METIS_PartMeshDual(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *);*/
+
+void METIS_PartMeshNodal(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *);
+void METIS_PartMeshDual(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *);
+
+int log2(int);
+
+/*int log2(int);*/
+
+metismex.c
+
+/*    int i, j, jbar, n, nnz, *jc, *ir;
+
+    int i, j, jbar, n, nnz;
+    mwIndex *jc, *ir;
+
+[jschierm@astrid meshpart]$ mex -I/u/wilkes-r1b/jschierm/issm/trunk/externalpackages/metis/install/Lib -L/u/wilkes-r1b/jschierm/issm/trunk/externalpackages/metis/install -lmetis -largeArrayDims metismex.c
+