Index: /issm/trunk-jpl/externalpackages/hdf5/install-1-parallel-static.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/hdf5/install-1-parallel-static.sh	(revision 28020)
+++ /issm/trunk-jpl/externalpackages/hdf5/install-1-parallel-static.sh	(revision 28021)
@@ -5,5 +5,5 @@
 ## Constants
 #
-VER="1.10.9"
+VER="1.8.23"
 
 PREFIX="${ISSM_DIR}/externalpackages/hdf5/install" # Set to location where external package should be installed
Index: /issm/trunk-jpl/externalpackages/hdf5/install-1-parallel-with_tests.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/hdf5/install-1-parallel-with_tests.sh	(revision 28020)
+++ /issm/trunk-jpl/externalpackages/hdf5/install-1-parallel-with_tests.sh	(revision 28021)
@@ -5,5 +5,5 @@
 ## Constants
 #
-VER="1.14.0"
+VER="1.8.23"
 
 PREFIX="${ISSM_DIR}/externalpackages/hdf5/install" # Set to location where external package should be installed
Index: /issm/trunk-jpl/externalpackages/hdf5/install-1-parallel.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/hdf5/install-1-parallel.sh	(revision 28020)
+++ /issm/trunk-jpl/externalpackages/hdf5/install-1-parallel.sh	(revision 28021)
@@ -5,5 +5,5 @@
 ## Constants
 #
-VER="1.14.0"
+VER="1.8.23"
 
 PREFIX="${ISSM_DIR}/externalpackages/hdf5/install" # Set to location where external package should be installed
Index: /issm/trunk-jpl/externalpackages/hdf5/install-1-with_tests.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/hdf5/install-1-with_tests.sh	(revision 28020)
+++ /issm/trunk-jpl/externalpackages/hdf5/install-1-with_tests.sh	(revision 28021)
@@ -5,5 +5,5 @@
 ## Constants
 #
-VER="1.14.0"
+VER="1.8.23"
 
 PREFIX="${ISSM_DIR}/externalpackages/hdf5/install" # Set to location where external package should be installed
Index: /issm/trunk-jpl/externalpackages/hdf5/install-1.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/hdf5/install-1.sh	(revision 28020)
+++ /issm/trunk-jpl/externalpackages/hdf5/install-1.sh	(revision 28021)
@@ -5,5 +5,5 @@
 ## Constants
 #
-VER="1.14.0"
+VER="1.8.23"
 
 PREFIX="${ISSM_DIR}/externalpackages/hdf5/install" # Set to location where external package should be installed
Index: sm/trunk-jpl/jenkins/pine_island-mac-adolc-ampion
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-adolc-ampion	(revision 28020)
+++ 	(revision )
@@ -1,82 +1,0 @@
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-MATLAB_PATH="/Applications/MATLAB_R2019b.app"
-
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--disable-static \
-	--enable-development \
-	--enable-debugging \
-	--with-numthreads=4 \
-	--without-kriging \
-	--without-kml \
-	--without-Sealevelchange \
-	--without-Love \
-	--with-matlab-dir=${MATLAB_PATH} \
-	--with-python-dir=/System/Library/Frameworks/Python.framework/Versions/2.7 \
-	--with-python-numpy-dir=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy \
-	--with-fortran-lib="-L/usr/local/Cellar/gcc/11.3.0/lib/gcc/11 -lgfortran" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include  \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-ampi-dir=${ISSM_DIR}/externalpackages/adjoinablempi/install \
-	--with-adolc-dir=${ISSM_DIR}/externalpackages/adolc/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-# NOTE: The PETSc libraries are compiled but not used as they conflict with
-#		ADOL-C: PETSc is really just being used as an installer for other
-#		external packages.
-#
-EXTERNALPACKAGES="
-	autotools		install-mac.sh
-	cmake			install.sh
-	petsc			install-3.12-mac.sh
-	gsl				install.sh
-	triangle		install-mac.sh
-	adjoinablempi	install-mac.sh
-	adolc			install-mac-with_ampi.sh
-	shell2junit		install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# PYTHON and MATLAB testing
-MATLAB_TEST=1
-PYTHON_TEST=1
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation.
-#
-NUMCPUS_INSTALL=8
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=2
-
-# Nightly run options
-#
-# See documentation in test/NightlyRun/runme.* for more information.
-#
-# NOTE:
-# - test3010 is skipped because it triggers GEMB module and a subsequent
-#	failure on ampioff configuration (really, likely a segmentation fault)
-#
-MATLAB_NROPTIONS="'benchmark','adolc','id',[3001, 3002, 3003, 3004, 3005, 3006, 3007, 3008, 3009, 3010, 3101, 3102, 3103, 3104, 3105, 3106, 3107, 3108, 3109, 3119],'exclude',3010"
-PYTHON_NROPTIONS="--benchmark=adolc -i 3001 3002 3003 3004 3005 3006 3007 3008 3009 3010 3101 3102 3103 3104 3105 3106 3107 3108 3109 3119 --exclude=3010"
Index: sm/trunk-jpl/jenkins/pine_island-mac-basic
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-basic	(revision 28020)
+++ 	(revision )
@@ -1,73 +1,0 @@
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-MATLAB_PATH="/Applications/MATLAB_R2018a.app"
-
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--disable-static \
-	--enable-development \
-	--enable-debugging \
-	--with-numthreads=4 \
-	--with-matlab-dir=${MATLAB_PATH} \
-	--with-fortran-lib="-L/usr/local/Cellar/gcc/11.3.0/lib/gcc/11 -lgfortran" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-# List of external packages to be installed and their installation scripts
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.12-mac.sh
-	triangle	install-mac.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=1
-PYTHON_TEST=0
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=4
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=2
-
-# Nightly run options
-#
-# See documentation in test/NightlyRun/runme.* for more information
-#
-# NOTE:
-# - test701 is skipped because it uses full Stokes equations
-#
-MATLAB_NROPTIONS="'exclude',[IdFromString('Dakota'),435,701,702,703]"
-PYTHON_NROPTIONS=""
Index: sm/trunk-jpl/jenkins/pine_island-mac-binaries-matlab
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-binaries-matlab	(revision 28020)
+++ 	(revision )
@@ -1,94 +1,0 @@
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-# MATLAB path
-MATLAB_PATH="/Applications/MATLAB_R2018a.app"
-
-# NOTE:
-# - We can disable dependency tracking in the Autotools because the binaries
-#	should always be a one-time build.
-#
-# TODO:
-# - Add static copy of libsqlite and make sure it is found during GMT configuration
-#
-
-# ISSM CONFIGURATION
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--enable-standalone-executables \
-	--enable-standalone-modules \
-	--enable-standalone-libraries \
-	--disable-dependency-tracking \
-	--with-matlab-dir=${MATLAB_PATH} \
-	--with-fortran-lib="/usr/local/Cellar/gcc/11.3.0/lib/gcc/11/libgfortran.a /usr/local/Cellar/gcc/11.3.0/lib/gcc/11/libquadmath.a /usr/local/Cellar/gcc/11.3.0/lib/gcc/11/gcc/x86_64-apple-darwin15/11/libgcc.a" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \
-	--with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \
-	--with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.12-mac-static.sh
-	gsl			install-static.sh
-	boost		install-1.7-mac-static.sh
-	dakota		install-6.2-mac-static.sh
-	curl		install-7-mac-static.sh
-	netcdf		install-4.7-parallel-static.sh
-	proj		install-6-static.sh
-	gdal		install-3-static.sh
-	gshhg		install.sh
-	gmt			install-6-mac-static.sh
-	gmsh		install-4-mac-static.sh
-	triangle	install-mac-static.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=0
-PYTHON_TEST=0
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=4
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=1
-
-# Nightly run options
-#
-# See documentation in test/NightlyRun/runme.* for more information.
-#
-PYTHON_NROPTIONS=""
-MATLAB_NROPTIONS=""
Index: sm/trunk-jpl/jenkins/pine_island-mac-binaries-python-2
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-binaries-python-2	(revision 28020)
+++ 	(revision )
@@ -1,92 +1,0 @@
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-# NOTE:
-# - We can disable dependency tracking in the Autotools because the binaries
-#	should always be a one-time build.
-#
-# TODO:
-# - Add static copy of libsqlite and make sure it is found during GMT configuration
-#
-
-# ISSM CONFIGURATION
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--enable-standalone-executables \
-	--enable-standalone-modules \
-	--enable-standalone-libraries \
-	--disable-dependency-tracking \
-	--with-python-dir=/System/Library/Frameworks/Python.framework/Versions/2.7 \
-	--with-python-numpy-dir=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy \
-	--with-fortran-lib="/usr/local/Cellar/gcc/11.3.0/lib/gcc/11/libgfortran.a /usr/local/Cellar/gcc/11.3.0/lib/gcc/11/libquadmath.a /usr/local/Cellar/gcc/11.3.0/lib/gcc/11/gcc/x86_64-apple-darwin15/11/libgcc.a" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \
-	--with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \
-	--with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.12-mac-static.sh
-	gsl			install-static.sh
-	boost		install-1.7-mac-static.sh
-	dakota		install-6.2-mac-static.sh
-	curl		install-7-mac-static.sh
-	netcdf		install-4.7-parallel-static.sh
-	proj		install-6-static.sh
-	gdal		install-3-python-static.sh
-	gshhg		install.sh
-	gmt			install-6-mac-static.sh
-	gmsh		install-4-mac-static.sh
-	triangle	install-mac-static.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=0
-PYTHON_TEST=0
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=8
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=1
-
-# Nightly run options
-#
-# See documentation in test/NightlyRun/runme.* for more information.
-#
-PYTHON_NROPTIONS=""
-MATLAB_NROPTIONS=""
Index: sm/trunk-jpl/jenkins/pine_island-mac-binaries-python-3
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-binaries-python-3	(revision 28020)
+++ 	(revision )
@@ -1,93 +1,0 @@
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-# NOTE:
-# - We can disable dependency tracking in the Autotools because the binaries
-#	should always be a one-time build.
-#
-# TODO:
-# - Add static copy of libsqlite and make sure it is found during GMT configuration
-#
-
-# ISSM CONFIGURATION
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--enable-standalone-executables \
-	--enable-standalone-modules \
-	--enable-standalone-libraries \
-	--disable-dependency-tracking \
-	--with-python-version=3.4 \
-	--with-python-dir=/Library/Frameworks/Python.framework/Versions/3.4 \
-	--with-python-numpy-dir=/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/numpy \
-	--with-fortran-lib="/usr/local/Cellar/gcc/11.3.0/lib/gcc/11/libgfortran.a /usr/local/Cellar/gcc/11.3.0/lib/gcc/11/libquadmath.a /usr/local/Cellar/gcc/11.3.0/lib/gcc/11/gcc/x86_64-apple-darwin15/11/libgcc.a" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \
-	--with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \
-	--with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.12-mac-static.sh
-	gsl			install-static.sh
-	boost		install-1.7-mac-static.sh
-	dakota		install-6.2-mac-static.sh
-	curl		install-7-mac-static.sh
-	netcdf		install-4.7-parallel-static.sh
-	proj		install-6-static.sh
-	gdal		install-3-python-static.sh
-	gshhg		install.sh
-	gmt			install-6-mac-static.sh
-	gmsh		install-4-mac-static.sh
-	triangle	install-mac-static.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=0
-PYTHON_TEST=0
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=8
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=1
-
-# Nightly run options
-#
-# See documentation in test/NightlyRun/runme.* for more information.
-#
-PYTHON_NROPTIONS=""
-MATLAB_NROPTIONS=""
Index: sm/trunk-jpl/jenkins/pine_island-mac-dakota
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-dakota	(revision 28020)
+++ 	(revision )
@@ -1,99 +1,0 @@
-# TODO: Change PROJ installation script to latest version once Jenkins macOS 
-#		build node has been upgraded.
-#
-
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-MATLAB_PATH="/Applications/MATLAB_R2018a.app"
-
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--disable-static \
-	--enable-development \
-	--enable-debugging \
-	--with-numthreads=4 \
-	--with-matlab-dir=${MATLAB_PATH} \
-	--with-python-dir=/System/Library/Frameworks/Python.framework/Versions/2.7 \
-	--with-python-numpy-dir=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy \
-	--with-fortran-lib="-L/usr/local/Cellar/gcc/11.3.0/lib/gcc/11 -lgfortran" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \
-	--with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \
-	--with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-#List of external packages to be installed and their installation scripts
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.12-mac.sh
-	gsl			install.sh
-	boost		install-1.7-mac.sh
-	dakota		install-6.2-mac.sh
-	curl		install-7-mac.sh
-	netcdf		install-4.7-parallel.sh
-	proj		install-6.sh
-	gdal		install-3-python.sh
-	gshhg		install.sh
-	gmt			install-6-mac.sh
-	gmsh		install-4-mac.sh
-	triangle	install-mac.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=1
-PYTHON_TEST=1
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=4
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=2
-
-# Nightly run options
-#
-# See documentation in test/NightlyRun/runme.* for more information.
-#
-# NOTE:
-# - Errors are large for tests 234, 235, 418, and 420 under MATLAB
-# - Tests 444 and 445 fail intermittently under MATLAB with "Index exceeds array bounds."
-# - Errors are large for tests 234 418 and 420 under Python
-# - See test417.py for why it is excluded
-# - Test 444 fails intermittently under Python with "IndexError: list index out of range"
-# - Excluding 2006 until it can be debugged (file I/O)
-#
-MATLAB_NROPTIONS="'id',[IdFromString('Dakota')],'exclude',[234 235 418 420 444 445 2006]"
-PYTHON_NROPTIONS="--include_name 'Dakota' --exclude 234 417 418 420 444 445 2006"
Index: sm/trunk-jpl/jenkins/pine_island-mac-examples
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-examples	(revision 28020)
+++ 	(revision )
@@ -1,89 +1,0 @@
-# NOTE: Same configuration as pine_island-mac-full
-#
-# TODO: Change PROJ installation script to latest version once Jenkins macOS 
-#		build node has been upgraded.
-#
-
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-MATLAB_PATH="/Applications/MATLAB_R2018a.app"
-
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--disable-static \
-	--enable-development \
-	--enable-debugging \
-	--with-numthreads=4 \
-	--with-matlab-dir=${MATLAB_PATH} \
-	--with-python-dir=/System/Library/Frameworks/Python.framework/Versions/2.7 \
-	--with-python-numpy-dir=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy \
-	--with-fortran-lib="-L/usr/local/Cellar/gcc/11.3.0/lib/gcc/11 -lgfortran" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \
-	--with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \
-	--with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.12-mac.sh
-	gsl			install.sh
-	boost		install-1.7-mac.sh
-	dakota		install-6.2-mac.sh
-	curl		install-7-mac.sh
-	netcdf		install-4.7-parallel.sh
-	proj		install-6.sh
-	gdal		install-3-python.sh
-	gshhg		install.sh
-	gmt			install-6-mac.sh
-	gmsh		install-4-mac.sh
-	triangle	install-mac.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=0
-PYTHON_TEST=0
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=1
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=8
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=1
-
-# Nightly run options
-MATLAB_NROPTIONS=""
-PYTHON_NROPTIONS=""
Index: sm/trunk-jpl/jenkins/pine_island-mac-full
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-full	(revision 28020)
+++ 	(revision )
@@ -1,86 +1,0 @@
-# NOTE: This configuration adds solid earth and Dakota capabilities to the 
-#		basic build.
-
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-MATLAB_PATH="/Applications/MATLAB_R2018a.app"
-
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--disable-static \
-	--enable-development \
-	--enable-debugging \
-	--with-numthreads=4 \
-	--with-matlab-dir=${MATLAB_PATH} \
-	--with-python-dir=/System/Library/Frameworks/Python.framework/Versions/2.7 \
-	--with-python-numpy-dir=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy \
-	--with-fortran-lib="-L/usr/local/Cellar/gcc/11.3.0/lib/gcc/11 -lgfortran" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \
-	--with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \
-	--with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.17-mac-intel.sh
-	gsl			install.sh
-	boost		install-1.7-mac.sh
-	dakota		install-6.2-mac.sh
-	curl		install-7-mac.sh
-	netcdf		install-4.7-parallel.sh
-	proj		install-6.sh
-	gdal		install-3-python.sh
-	gshhg		install.sh
-	gmt			install-6-mac.sh
-	gmsh		install-4-mac.sh
-	triangle	install-mac.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=0
-PYTHON_TEST=0
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=8
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=1
-
-# Nightly run options
-MATLAB_NROPTIONS=""
-PYTHON_NROPTIONS=""
Index: sm/trunk-jpl/jenkins/pine_island-mac-full-valgrind
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-full-valgrind	(revision 28020)
+++ 	(revision )
@@ -1,88 +1,0 @@
-# NOTE: This configuration adds solid earth and Dakota capabilities to the 
-#		basic build, as well as the ability to debug with Valgrind.
-
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-MATLAB_PATH="/Applications/MATLAB_R2018a.app"
-
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--disable-static \
-	--enable-development \
-	--enable-debugging \
-	--with-numthreads=4 \
-	--with-matlab-dir=${MATLAB_PATH} \
-	--with-python-dir=/System/Library/Frameworks/Python.framework/Versions/2.7 \
-	--with-python-numpy-dir=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy \
-	--with-fortran-lib="-L/usr/local/Cellar/gcc/11.3.0/lib/gcc/11 -lgfortran" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \
-	--with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \
-	--with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.16-mac.sh
-	gsl			install.sh
-	boost		install-1.7-mac-valgrind.sh
-	dakota		install-6.2-mac.sh
-	curl		install-7-mac.sh
-	netcdf		install-4.7-parallel.sh
-	proj		install-6.sh
-	sqlite		install.sh
-	gdal		install-3-python.sh
-	gshhg		install.sh
-	gmt			install-6-mac.sh
-	gmsh		install-4-mac.sh
-	triangle	install-mac.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	valgrind	install-mac.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=0
-PYTHON_TEST=0
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=8
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=1
-
-# Nightly run options
-MATLAB_NROPTIONS=""
-PYTHON_NROPTIONS=""
Index: sm/trunk-jpl/jenkins/pine_island-mac-solid_earth
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-solid_earth	(revision 28020)
+++ 	(revision )
@@ -1,96 +1,0 @@
-# TODO: Change PROJ installation script to latest version once Jenkins macOS 
-#		build node has been upgraded.
-#
-
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-MATLAB_PATH="/Applications/MATLAB_R2018a.app"
-
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--disable-static \
-	--enable-development \
-	--enable-debugging \
-	--with-numthreads=4 \
-	--with-matlab-dir=${MATLAB_PATH} \
-	--with-python-dir=/System/Library/Frameworks/Python.framework/Versions/2.7 \
-	--with-python-numpy-dir=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy \
-	--with-fortran-lib="-L/usr/local/Cellar/gcc/11.3.0/lib/gcc/11 -lgfortran" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \
-	--with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \
-	--with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-#List of external packages to be installed and their installation scripts
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.12-mac.sh
-	gsl			install.sh
-	boost		install-1.7-mac.sh
-	dakota		install-6.2-mac.sh
-	curl		install-7-mac.sh
-	netcdf		install-4.7-parallel.sh
-	proj		install-6.sh
-	gdal		install-3-python.sh
-	gshhg		install.sh
-	gmt			install-6-mac.sh
-	gmsh		install-4-mac.sh
-	triangle	install-mac.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=1
-PYTHON_TEST=1
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=4
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=2
-
-# Nightly run options
-#
-# See documentation in test/NightlyRun/runme.* for more information.
-#
-# NOTE:
-# - Excluding 2006 until it can be debugged (file I/O)
-# - Excluding 2012 until it can be looked at by Eric ("FindParam error message: Parameter HydrologyModel not set")
-# - Excluding 2091 until it can be debugged (resource starvation)
-#
-MATLAB_NROPTIONS="'benchmark','slc','exclude',[2004 2006 2012 2051 2052 2053 2085 2091 2424 2425]"
-PYTHON_NROPTIONS="--benchmark slc --exclude 2004 2006 2012 2051 2052 2053 2085 2091 2424 2425"
Index: sm/trunk-jpl/jenkins/pine_island-mac-solid_earth-lambert
===================================================================
--- /issm/trunk-jpl/jenkins/pine_island-mac-solid_earth-lambert	(revision 28020)
+++ 	(revision )
@@ -1,95 +1,0 @@
-# TODO: Change PROJ installation script to latest version once Jenkins macOS 
-#		build node has been upgraded.
-#
-
-#--------------------#
-# ISSM Configuration #
-#--------------------#
-
-MATLAB_PATH="/Applications/MATLAB_R2018a.app"
-
-ISSM_CONFIG='\
-	--prefix=${ISSM_DIR} \
-	--disable-static \
-	--enable-development \
-	--enable-debugging \
-	--with-numthreads=4 \
-	--with-matlab-dir=${MATLAB_PATH} \
-	--with-python-dir=/System/Library/Frameworks/Python.framework/Versions/2.7 \
-	--with-python-numpy-dir=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy \
-	--with-fortran-lib="-L/usr/local/Cellar/gcc/11.3.0/lib/gcc/11 -lgfortran" \
-	--with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \
-	--with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \
-	--with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \
-	--with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
-	--with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \
-	--with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \
-	--with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \
-	--with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \
-	--with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \
-	--with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \
-	--with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \
-'
-
-#-------------------#
-# External Packages #
-#-------------------#
-
-#List of external packages to be installed and their installation scripts
-EXTERNALPACKAGES="
-	autotools	install-mac.sh
-	cmake		install.sh
-	petsc		install-3.12-mac.sh
-	gsl			install.sh
-	boost		install-1.7-mac.sh
-	dakota		install-6.2-mac.sh
-	curl		install-7-mac.sh
-	netcdf		install-4.7-parallel.sh
-	proj		install-6.sh
-	gdal		install-3-python.sh
-	gshhg		install.sh
-	gmt			install-6-mac.sh
-	gmsh		install-4-mac.sh
-	triangle	install-mac.sh
-	chaco		install-mac.sh
-	m1qn3		install.sh
-	semic		install.sh
-	shell2junit	install.sh
-"
-
-#---------#
-# Testing #
-#---------#
-
-# Test suites
-MATLAB_TEST=1
-PYTHON_TEST=1
-JAVASCRIPT_TEST=0
-EXAMPLES_TEST=0
-
-# Number of CPUs used in ISSM compilation
-#
-# NOTE: One is usually safer as some packages are very sensitive to parallel
-# 		compilation
-#
-NUMCPUS_INSTALL=4
-
-# Number of CPUs used in the nightly runs
-NUMCPUS_RUN=2
-
-# Nightly run options
-#
-# See documentation in test/NightlyRun/runme.* for more information.
-#
-# NOTE:
-# - Excluding 2006 until it can be debugged (file I/O)
-# - Excluding 2091 until it can be debugged (resource starvation)
-#
-MATLAB_NROPTIONS="'benchmark','slc','exclude',[2006 2091]"
-PYTHON_NROPTIONS="--benchmark slc --exclude 2006 2091"