Changeset 28013

Timestamp:

11/15/23 12:14:04 (2 years ago)

Author:

Mathieu Morlighem

Message:

merged trunk-jpl and trunk for revision 28011

Location:

issm/trunk

Files:

• . (modified) (view diffs)
• configure.ac (modified) (view diffs)
• etc/environment.sh (modified) (view diffs)
• examples/EsaGRACE/runme.m (modified) (view diffs)
• examples/StISSM (copied) (copied from issm/trunk-jpl/examples/StISSM ) (view diffs)
• externalpackages/adjoinablempi/install-pleaides-gcc.sh (modified) (view diffs)
• externalpackages/adjoinablempi/install-pleaides.sh (modified) (view diffs)
• externalpackages/adolc/install-withampi-pleiades-gcc.sh (modified) (view diffs)
• externalpackages/adolc/install-withampi-pleiades.sh (modified) (view diffs)
• externalpackages/adolc/install.sh (modified) (view diffs)
• externalpackages/boost/install-1.55-pleiades.sh (modified) (view diffs)
• externalpackages/boost/install-1.7-linux-static.sh (modified) (view diffs)
• externalpackages/boost/install-1.7-linux-valgrind.sh (modified) (view diffs)
• externalpackages/boost/install-1.7-mac-valgrind.sh (copied) (copied from issm/trunk-jpl/externalpackages/boost/install-1.7-mac-valgrind.sh ) (view diffs)
• externalpackages/chaco/configs/mac (copied) (copied from issm/trunk-jpl/externalpackages/chaco/configs/mac ) (view diffs)
• externalpackages/chaco/configs/win/msys2/mingw64/code (copied) (copied from issm/trunk-jpl/externalpackages/chaco/configs/win/msys2/mingw64/code ) (view diffs)
• externalpackages/chaco/configs/win/msys2/mingw64/src (deleted)
• externalpackages/chaco/install-linux.sh (copied) (copied from issm/trunk-jpl/externalpackages/chaco/install-linux.sh ) (view diffs)
• externalpackages/chaco/install-mac-sierra.sh (deleted)
• externalpackages/chaco/install-mac.sh (copied) (copied from issm/trunk-jpl/externalpackages/chaco/install-mac.sh ) (view diffs)
• externalpackages/chaco/install-win-msys2-mingw.sh (modified) (view diffs)
• externalpackages/chaco/install.sh (deleted)
• externalpackages/codipack/install.sh (modified) (view diffs)
• externalpackages/dakota/install-6.2-linux-static.sh (modified) (view diffs)
• externalpackages/dakota/install-6.2-linux.sh (modified) (view diffs)
• externalpackages/dakota/install-6.2-mac-static.sh (modified) (view diffs)
• externalpackages/dakota/install-6.2-mac.sh (modified) (view diffs)
• externalpackages/dakota/install-6.2-macosx64-catalina.sh (deleted)
• externalpackages/dakota/install-6.2-macosx64-highsierra.sh (deleted)
• externalpackages/dakota/install-6.2-macosx64-snowleopard.sh (deleted)
• externalpackages/dakota/install-6.2-macosx64-yosemite.sh (deleted)
• externalpackages/dakota/install-6.2-pleiades_toss4.sh (copied) (copied from issm/trunk-jpl/externalpackages/dakota/install-6.2-pleiades_toss4.sh ) (view diffs)
• externalpackages/gdal/install-1.10-debian-netcdf.sh (deleted)
• externalpackages/gdal/install-1.10-linux64-nopython.sh (deleted)
• externalpackages/gdal/install-1.10-linux64.sh (deleted)
• externalpackages/gdal/install-1.10-macosx64.sh (deleted)
• externalpackages/gdal/install-1.11.2-macosx64.sh (deleted)
• externalpackages/gdal/install-3-python-static.sh (modified) (view diffs)
• externalpackages/gdal/install-3-python.sh (modified) (view diffs)
• externalpackages/gdal/install-3-static.sh (modified) (view diffs)
• externalpackages/gdal/install-3.sh (modified) (view diffs)
• externalpackages/gmsh/configs/4.10.5 (copied) (copied from issm/trunk-jpl/externalpackages/gmsh/configs/4.10.5 ) (view diffs)
• externalpackages/gmsh/install-4-linux-static.sh (modified) (view diffs)
• externalpackages/gmsh/install-4-linux.sh (modified) (view diffs)
• externalpackages/gmsh/install-4-mac-static.sh (modified) (view diffs)
• externalpackages/gmsh/install-4-mac.sh (modified) (view diffs)
• externalpackages/gmt/configs/6/mac/cmake/modules (copied) (copied from issm/trunk-jpl/externalpackages/gmt/configs/6/mac/cmake/modules ) (view diffs)
• externalpackages/gmt/configs/6/static/cmake/modules/FindGDAL.cmake (modified) (view diffs)
• externalpackages/gmt/configs/6/static/cmake/modules/FindNETCDF.cmake (modified) (view diffs)
• externalpackages/gmt/configs/6/static/linux/cmake/ConfigUser.static.cmake (modified) (view diffs)
• externalpackages/gmt/configs/6/static/mac/cmake/ConfigUser.static.cmake (modified) (view diffs)
• externalpackages/gmt/install-6-linux-static.sh (modified) (view diffs)
• externalpackages/gmt/install-6-linux.sh (modified) (view diffs)
• externalpackages/gmt/install-6-mac-static.sh (modified) (view diffs)
• externalpackages/gmt/install-6-mac.sh (modified) (view diffs)
• externalpackages/hdf5/install-1-parallel-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/hdf5/install-1-parallel-static.sh ) (view diffs)
• externalpackages/hdf5/install-1-parallel-with_tests.sh (modified) (view diffs)
• externalpackages/hdf5/install-1-parallel.sh (modified) (view diffs)
• externalpackages/hdf5/install-1-with_tests.sh (modified) (view diffs)
• externalpackages/hdf5/install-1.sh (modified) (view diffs)
• externalpackages/m1qn3/install.sh (modified) (view diffs)
• externalpackages/medipack/install.sh (modified) (view diffs)
• externalpackages/msmpi/install-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/msmpi/install-static.sh ) (view diffs)
• externalpackages/msmpi/install.sh (modified) (view diffs)
• externalpackages/netcdf/install-4.7-parallel-static-with_tests.sh (modified) (view diffs)
• externalpackages/netcdf/install-4.7-parallel-static.sh (modified) (view diffs)
• externalpackages/netcdf/install-4.7-parallel-with_tests.sh (modified) (view diffs)
• externalpackages/netcdf/install-4.7-parallel.sh (modified) (view diffs)
• externalpackages/netcdf/install-4.7-with_tests.sh (modified) (view diffs)
• externalpackages/netcdf/install-4.7.sh (modified) (view diffs)
• externalpackages/petsc/install-3.12-linux-static.sh (deleted)
• externalpackages/petsc/install-3.12-linux.sh (deleted)
• externalpackages/petsc/install-3.12-lonestar.sh (deleted)
• externalpackages/petsc/install-3.12-mac-static.sh (deleted)
• externalpackages/petsc/install-3.12-mac.sh (deleted)
• externalpackages/petsc/install-3.12-win-msys2-gcc-msmpi.sh (deleted)
• externalpackages/petsc/install-3.13-pleiades.sh (deleted)
• externalpackages/petsc/install-3.14-discover.sh (modified) (view diffs)
• externalpackages/petsc/install-3.14-linux-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.14-linux-static.sh ) (view diffs)
• externalpackages/petsc/install-3.14-mac-nohdf5.sh (deleted)
• externalpackages/petsc/install-3.14-mac-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.14-mac-static.sh ) (view diffs)
• externalpackages/petsc/install-3.14-mac-with-hdf5-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.14-mac-with-hdf5-static.sh ) (view diffs)
• externalpackages/petsc/install-3.14-mac-with-hdf5.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.14-mac-with-hdf5.sh ) (view diffs)
• externalpackages/petsc/install-3.14-mac.sh (modified) (view diffs)
• externalpackages/petsc/install-3.14-win-msys2-mingw-msmpi-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.14-win-msys2-mingw-msmpi-static.sh ) (view diffs)
• externalpackages/petsc/install-3.14-win-msys2-mingw-msmpi.sh (modified) (view diffs)
• externalpackages/petsc/install-3.15-babylon.sh (modified) (view diffs)
• externalpackages/petsc/install-3.16-linux.sh (modified) (view diffs)
• externalpackages/petsc/install-3.16-mac.sh (modified) (view diffs)
• externalpackages/petsc/install-3.17-discovery.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.17-discovery.sh ) (view diffs)
• externalpackages/petsc/install-3.17-linux-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.17-linux-static.sh ) (view diffs)
• externalpackages/petsc/install-3.17-linux.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.17-linux.sh ) (view diffs)
• externalpackages/petsc/install-3.17-mac-intel.sh (modified) (view diffs)
• externalpackages/petsc/install-3.17-mac-m1-static.sh (deleted)
• externalpackages/petsc/install-3.17-mac-m1.sh (deleted)
• externalpackages/petsc/install-3.17-mac-silicon-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.17-mac-silicon-static.sh ) (view diffs)
• externalpackages/petsc/install-3.17-mac-silicon.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.17-mac-silicon.sh ) (view diffs)
• externalpackages/petsc/install-3.19-discovery.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.19-discovery.sh ) (view diffs)
• externalpackages/petsc/install-3.19-mac-intel.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.19-mac-intel.sh ) (view diffs)
• externalpackages/petsc/install-3.20-pleiades.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.20-pleiades.sh ) (view diffs)
• externalpackages/petsc/install-3.6-win10.sh (deleted)
• externalpackages/petsc/install-3.7-discover.sh (deleted)
• externalpackages/petsc/install-dev-linux64.sh (deleted)
• externalpackages/petsc/install-dev-pleiades.sh (deleted)
• externalpackages/petsc/install-dev-win10-par.sh (deleted)
• externalpackages/petsc/install-dev-win10.sh (deleted)
• externalpackages/semic/install.sh (modified) (view diffs)
• externalpackages/sqlite/install-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/sqlite/install-static.sh ) (view diffs)
• externalpackages/sqlite/install.sh (modified) (view diffs)
• externalpackages/triangle/install-win-msys2-mingw-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/triangle/install-win-msys2-mingw-static.sh ) (view diffs)
• externalpackages/valgrind/install-linux.sh (modified) (view diffs)
• externalpackages/valgrind/install-mac.sh (modified) (view diffs)
• externalpackages/vim/addons/vimrc (modified) (view diffs)
• jenkins/aws-amazon_linux-solid_earth (modified) (view diffs)
• jenkins/eis-daskhub-python-modules (copied) (copied from issm/trunk-jpl/jenkins/eis-daskhub-python-modules ) (view diffs)
• jenkins/eis-daskhub-python-nodules (deleted)
• jenkins/eis-smce-binaries (modified) (view diffs)
• jenkins/examples_tests.sh (modified) (view diffs)
• jenkins/jenkins.sh (modified) (view diffs)
• jenkins/linux64_caladan (modified) (view diffs)
• jenkins/linux64_caladan_ad (modified) (view diffs)
• jenkins/linux64_caladan_ampi (modified) (view diffs)
• jenkins/mac-intel-basic (copied) (copied from issm/trunk-jpl/jenkins/mac-intel-basic ) (view diffs)
• jenkins/mac-intel-binaries-matlab (copied) (copied from issm/trunk-jpl/jenkins/mac-intel-binaries-matlab ) (view diffs)
• jenkins/mac-intel-binaries-python-3 (copied) (copied from issm/trunk-jpl/jenkins/mac-intel-binaries-python-3 ) (view diffs)
• jenkins/mac-intel-dakota (copied) (copied from issm/trunk-jpl/jenkins/mac-intel-dakota ) (view diffs)
• jenkins/mac-intel-examples (copied) (copied from issm/trunk-jpl/jenkins/mac-intel-examples ) (view diffs)
• jenkins/mac-intel-full (copied) (copied from issm/trunk-jpl/jenkins/mac-intel-full ) (view diffs)
• jenkins/mac-intel-solid_earth (copied) (copied from issm/trunk-jpl/jenkins/mac-intel-solid_earth ) (view diffs)
• jenkins/mac-silicon-basic (copied) (copied from issm/trunk-jpl/jenkins/mac-silicon-basic ) (view diffs)
• jenkins/mac-silicon-dakota (copied) (copied from issm/trunk-jpl/jenkins/mac-silicon-dakota ) (view diffs)
• jenkins/mac-silicon-examples (copied) (copied from issm/trunk-jpl/jenkins/mac-silicon-examples ) (view diffs)
• jenkins/mac-silicon-full (copied) (copied from issm/trunk-jpl/jenkins/mac-silicon-full ) (view diffs)
• jenkins/mac-silicon-solid_earth (copied) (copied from issm/trunk-jpl/jenkins/mac-silicon-solid_earth ) (view diffs)
• jenkins/pine_island-mac-basic (modified) (view diffs)
• jenkins/pine_island-mac-binaries-matlab (modified) (view diffs)
• jenkins/pine_island-mac-binaries-python-2 (modified) (view diffs)
• jenkins/pine_island-mac-binaries-python-3 (modified) (view diffs)
• jenkins/pine_island-mac-dakota (modified) (view diffs)
• jenkins/pine_island-mac-examples (modified) (view diffs)
• jenkins/pine_island-mac-full (modified) (view diffs)
• jenkins/pine_island-mac-full-valgrind (modified) (view diffs)
• jenkins/pine_island-mac-solid_earth (modified) (view diffs)
• jenkins/pine_island-mac-solid_earth-lambert (modified) (view diffs)
• jenkins/pleiades-solid_earth (modified) (view diffs)
• jenkins/ross-debian_linux-adolc-ampioff (modified) (view diffs)
• jenkins/ross-debian_linux-adolc-ampion (modified) (view diffs)
• jenkins/ross-debian_linux-basic (modified) (view diffs)
• jenkins/ross-debian_linux-binaries (deleted)
• jenkins/ross-debian_linux-binaries-matlab (modified) (view diffs)
• jenkins/ross-debian_linux-binaries-python-2 (deleted)
• jenkins/ross-debian_linux-binaries-python-3 (modified) (view diffs)
• jenkins/ross-debian_linux-codipack (modified) (view diffs)
• jenkins/ross-debian_linux-dakota (modified) (view diffs)
• jenkins/ross-debian_linux-full (modified) (view diffs)
• jenkins/ross-debian_linux-full-mplapack (modified) (view diffs)
• jenkins/ross-debian_linux-full-valgrind (modified) (view diffs)
• jenkins/ross-debian_linux-gia (modified) (view diffs)
• jenkins/ross-debian_linux-iceocean (modified) (view diffs)
• jenkins/ross-debian_linux-python (modified) (view diffs)
• jenkins/ross-debian_linux-solid_earth (modified) (view diffs)
• jenkins/ross-win-msys2-gcc-msmpi-basic (modified) (view diffs)
• jenkins/ross-win-msys2-mingw-msmpi-basic (modified) (view diffs)
• jenkins/ross-win-msys2-mingw-msmpi-binaries-matlab (copied) (copied from issm/trunk-jpl/jenkins/ross-win-msys2-mingw-msmpi-binaries-matlab ) (view diffs)
• jenkins/windows (deleted)
• jenkins/windows-par (deleted)
• jenkins/windows_static (deleted)
• jenkins/windows_test (deleted)
• m4/analyses.m4 (modified) (view diffs)
• m4/issm_options.m4 (modified) (view diffs)
• packagers/linux/complete-issm-linux-binaries-python-2.sh (deleted)
• packagers/linux/package-issm-linux-binaries-matlab.sh (modified) (view diffs)
• packagers/linux/package-issm-linux-binaries-python-2.sh (deleted)
• packagers/linux/package-issm-linux-binaries-python-3.sh (modified) (view diffs)
• packagers/mac/commit_for_signing-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/commit_for_signing-issm-mac-binaries-python-2.sh (deleted)
• packagers/mac/commit_for_signing-issm-mac-binaries-python-3.sh (modified) (view diffs)
• packagers/mac/complete-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/complete-issm-mac-binaries-python-2.sh (deleted)
• packagers/mac/complete-issm-mac-binaries-python-3.sh (modified) (view diffs)
• packagers/mac/package-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/package-issm-mac-binaries-python-2.sh (deleted)
• packagers/mac/package-issm-mac-binaries-python-3.sh (modified) (view diffs)
• packagers/mac/sign-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/sign-issm-mac-binaries-python-2.sh (deleted)
• packagers/mac/sign-issm-mac-binaries-python-3.sh (modified) (view diffs)
• packagers/mac/test-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/test-issm-mac-binaries-python-2.sh (deleted)
• packagers/mac/test-issm-mac-binaries-python-3.sh (modified) (view diffs)
• packagers/win (copied) (copied from issm/trunk-jpl/packagers/win ) (view diffs)
• packagers/win10 (deleted)
• scripts/BinRead.py (modified) (view diffs)
• scripts/DownloadExamplesDatasets.sh (modified) (view diffs)
• scripts/ol.m (modified) (view diffs)
• scripts/ola.m (copied) (copied from issm/trunk-jpl/scripts/ola.m ) (view diffs)
• scripts/py_to_pyc.sh (modified) (view diffs)
• scripts/svn_repo_authors.sh (modified) (view diffs)
• src (modified) (view diffs)
• src/c/Makefile.am (modified) (view diffs)
• src/c/analyses/AdjointHorizAnalysis.cpp (modified) (view diffs)
• src/c/analyses/AgeAnalysis.cpp (modified) (view diffs)
• src/c/analyses/AgeAnalysis.h (modified) (view diffs)
• src/c/analyses/DebrisAnalysis.cpp (modified) (view diffs)
• src/c/analyses/EnthalpyAnalysis.cpp (modified) (view diffs)
• src/c/analyses/EnumToAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyArmapwAnalysis.cpp (copied) (copied from issm/trunk-jpl/src/c/analyses/HydrologyArmapwAnalysis.cpp ) (view diffs)
• src/c/analyses/HydrologyArmapwAnalysis.h (copied) (copied from issm/trunk-jpl/src/c/analyses/HydrologyArmapwAnalysis.h ) (view diffs)
• src/c/analyses/HydrologyDCEfficientAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyDCInefficientAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyGlaDSAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyShaktiAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyShreveAnalysis.cpp (modified) (view diffs)
• src/c/analyses/LevelsetAnalysis.cpp (modified) (view diffs)
• src/c/analyses/MasstransportAnalysis.cpp (modified) (view diffs)
• src/c/analyses/SealevelchangeAnalysis.cpp (modified) (view diffs)
• src/c/analyses/SmbAnalysis.cpp (modified) (view diffs)
• src/c/analyses/StressbalanceAnalysis.cpp (modified) (view diffs)
• src/c/analyses/StressbalanceSIAAnalysis.cpp (modified) (view diffs)
• src/c/analyses/ThermalAnalysis.cpp (modified) (view diffs)
• src/c/analyses/analyses.h (modified) (view diffs)
• src/c/classes/Cfdragcoeffabsgrad.cpp (modified) (view diffs)
• src/c/classes/Cfdragcoeffabsgrad.h (modified) (view diffs)
• src/c/classes/Cfdragcoeffabsgradtransient.cpp (copied) (copied from issm/trunk-jpl/src/c/classes/Cfdragcoeffabsgradtransient.cpp ) (view diffs)
• src/c/classes/Cfdragcoeffabsgradtransient.h (copied) (copied from issm/trunk-jpl/src/c/classes/Cfdragcoeffabsgradtransient.h ) (view diffs)
• src/c/classes/Cflevelsetmisfit.cpp (modified) (view diffs)
• src/c/classes/Cflevelsetmisfit.h (modified) (view diffs)
• src/c/classes/Cfrheologybbarabsgrad.cpp (copied) (copied from issm/trunk-jpl/src/c/classes/Cfrheologybbarabsgrad.cpp ) (view diffs)
• src/c/classes/Cfrheologybbarabsgrad.h (copied) (copied from issm/trunk-jpl/src/c/classes/Cfrheologybbarabsgrad.h ) (view diffs)
• src/c/classes/Cfrheologybbarabsgradtransient.cpp (copied) (copied from issm/trunk-jpl/src/c/classes/Cfrheologybbarabsgradtransient.cpp ) (view diffs)
• src/c/classes/Cfrheologybbarabsgradtransient.h (copied) (copied from issm/trunk-jpl/src/c/classes/Cfrheologybbarabsgradtransient.h ) (view diffs)
• src/c/classes/Cfsurfacelogvel.cpp (modified) (view diffs)
• src/c/classes/Cfsurfacelogvel.h (modified) (view diffs)
• src/c/classes/Cfsurfacesquare.cpp (modified) (view diffs)
• src/c/classes/Cfsurfacesquare.h (modified) (view diffs)
• src/c/classes/Cfsurfacesquaretransient.cpp (copied) (copied from issm/trunk-jpl/src/c/classes/Cfsurfacesquaretransient.cpp ) (view diffs)
• src/c/classes/Cfsurfacesquaretransient.h (copied) (copied from issm/trunk-jpl/src/c/classes/Cfsurfacesquaretransient.h ) (view diffs)
• src/c/classes/DependentObject.cpp (modified) (view diffs)
• src/c/classes/DependentObject.h (modified) (view diffs)
• src/c/classes/Elements/Element.cpp (modified) (view diffs)
• src/c/classes/Elements/Element.h (modified) (view diffs)
• src/c/classes/Elements/Penta.cpp (modified) (view diffs)
• src/c/classes/Elements/Penta.h (modified) (view diffs)
• src/c/classes/Elements/PentaRef.cpp (modified) (view diffs)
• src/c/classes/Elements/Seg.h (modified) (view diffs)
• src/c/classes/Elements/Tetra.h (modified) (view diffs)
• src/c/classes/Elements/Tria.cpp (modified) (view diffs)
• src/c/classes/Elements/Tria.h (modified) (view diffs)
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• src/c/classes/Inputs/ControlInput.h (modified) (view diffs)
• src/c/classes/Inputs/Input.h (modified) (view diffs)
• src/c/classes/Inputs/Inputs.cpp (modified) (view diffs)
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• src/c/classes/IoModel.cpp (modified) (view diffs)
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• src/c/classes/Loads/Channel.cpp (modified) (view diffs)
• src/c/classes/Loads/Friction.cpp (modified) (view diffs)
• src/c/classes/Loads/Friction.h (modified) (view diffs)
• src/c/classes/Loads/Moulin.cpp (modified) (view diffs)
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