Index: /issm/trunk-jpl/src/m/classes/clusters/pace.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/pace.m	(revision 27256)
+++ /issm/trunk-jpl/src/m/classes/clusters/pace.m	(revision 27256)
@@ -0,0 +1,114 @@
+%PACE class definition
+%
+%   Usage:
+%      cluster=pace();
+%      cluster=pace('np',4);
+%      cluster=pace('np',4,'login','username');
+
+classdef pace 
+	properties (SetAccess=public)
+	% {{{
+		name            = 'login-phoenix-4.pace.gatech.edu' %Phoenix cluster name
+		login           = ''; %personal login
+		numnodes        = 1; %number of nodes requested
+		np              = 4; %number of processors per node
+		mem             = 5; %memory requested [GB]
+		port            = 0;
+		queue           = 'inferno'; %queue
+		time            = 60; %time requested per run [minutes]
+		accountname     = 'GT-arobel3-atlas'; %group account name
+		codepath        = ''; %path to issm binaries
+		executionpath   = ''; %path for execution folder
+	%}}}
+	end
+	methods
+		function cluster=pace(varargin) % {{{
+			cluster=AssignObjectFields(pairoptions(varargin{:}),cluster);
+		end
+		%}}}
+		function disp(cluster) % {{{
+			%  display the object
+			disp(sprintf('class ''%s'' object ''%s'' = ',class(cluster),inputname(1)));
+			disp(sprintf('    name of cluster (e.g. login-phoenix-4.pace.gatech.edu): %s',cluster.name));
+			disp(sprintf('    login (personal login): %s',cluster.login));
+			disp(sprintf('    numnodes (advice: leave this to 1): %i',cluster.numnodes));
+			disp(sprintf('    np (number of processors per node for each job): %i',cluster.np));
+			disp(sprintf('    mem (memory request per job): %i',cluster.mem));
+			disp(sprintf('    port: %i',cluster.port));
+			disp(sprintf('    queue (inferno/embers): %s',cluster.queue));
+			disp(sprintf('    time (run time per job in minutes): %i',cluster.time));
+			disp(sprintf('    codepath (directory with ISSM binaries): %s',cluster.codepath));
+			disp(sprintf('    executionpath (directory for the outputs): %s',cluster.executionpath));
+			disp(sprintf('    accountname (PI account): %s',cluster.accountname));
+		end
+		%}}}
+		function md = checkconsistency(cluster,md,solution,analyses) % {{{
+
+			available_queues        = {'inferno','embers'};
+			queue_requirements_time = [30240,480];
+         queue_requirements_np   = [28,28];
+         QueueRequirements(available_queues,queue_requirements_time,queue_requirements_np,cluster.queue,cluster.np,cluster.time)
+		
+		end
+		%}}}
+		function BuildQueueScript(cluster,dirname,modelname,solution,io_gather,isvalgrind,isgprof,isdakota,isoceancoupling) % {{{
+
+			executable = 'issm.exe';
+
+			if(isvalgrind), disp('valgrind not supported by cluster, ignoring...'); end
+			if(isgprof),    disp('gprof not supported by cluster, ignoring...'); end
+
+			%write queuing script 
+			fid=fopen([modelname '.queue'],'w');
+			fprintf(fid,'#!/bin/sh\n');
+			fprintf(fid,'#PBS -l walltime=%i\n',cluster.time*60); %conversion of walltime from minutes to seconds.
+			fprintf(fid,'#PBS -N %s\n',modelname);
+			fprintf(fid,'#PBS -l nodes=1:ppn=%i\n',cluster.np);
+			fprintf(fid,'#PBS -l pmem=%igb\n',cluster.mem);
+			fprintf(fid,'#PBS -q %s\n',cluster.queue);
+			fprintf(fid,'#PBS -A %s\n',cluster.accountname);
+		
+			fprintf(fid,'#PBS -o %s/%s/%s.outlog \n',cluster.executionpath,dirname,modelname);
+         fprintf(fid,'#PBS -e %s/%s/%s.errlog \n\n',cluster.executionpath,dirname,modelname);
+
+			fprintf(fid,'export PBS_O_WORKDIR=%s\n',[cluster.executionpath '/' dirname]);
+			fprintf(fid,'cd $PBS_O_WORKDIR\n');
+			fprintf(fid,'mpiexec -np %i %s/%s %s %s %s \n',cluster.np,cluster.codepath,executable,solution,[cluster.executionpath '/' dirname],modelname);	
+
+			fclose(fid);
+
+		end
+		%}}}
+		function UploadQueueJob(cluster,modelname,dirname,filelist) % {{{
+
+			%compress the files into one zip.
+			compressstring=['tar -zcf ' dirname '.tar.gz '];
+			for i=1:numel(filelist),
+				compressstring = [compressstring ' ' filelist{i}];
+			end
+			system(compressstring);
+
+			disp('uploading input file and queueing script');
+			issmscpout(cluster.name,cluster.executionpath,cluster.login,cluster.port,{[dirname '.tar.gz']});
+
+		end %}}}
+		function LaunchQueueJob(cluster,modelname,dirname,filelist,restart,batch) % {{{
+
+			disp('launching solution sequence on remote cluster');
+			if ~isempty(restart)
+				launchcommand=['cd ' cluster.executionpath ' && cd ' dirname ' && qsub ' modelname '.queue '];
+			else
+				launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
+					' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && qsub ' modelname '.queue '];
+			end
+			issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
+		end %}}}
+		function Download(cluster,dirname,filelist) % {{{
+
+			%copy files from cluster to current directory
+			directory=[cluster.executionpath '/' dirname '/'];
+			issmscpin(cluster.name,cluster.login,cluster.port,directory,filelist);
+
+		end %}}}
+	end
+end