Index: /issm/trunk-jpl/jenkins/jenkins.sh
===================================================================
--- /issm/trunk-jpl/jenkins/jenkins.sh	(revision 26784)
+++ /issm/trunk-jpl/jenkins/jenkins.sh	(revision 26785)
@@ -346,8 +346,9 @@
 		cd $ISSM_DIR/test/NightlyRun
 
+		# NOTE: We redirect all output to logfile in order to catch certain errors. For some reason, this does not work under Windows: the logifle option must be used and process must be run in background
 		if [[ "${OS}" == CYGWIN* || ${MINGW} -eq 1 ]]; then
-			$MATLAB_PATH/bin/matlab -nodesktop -nosplash -nojvm -r "addpath ${ISSM_DIR_WIN}/src/m/dev; devpath; addpath ${ISSM_DIR_WIN}/nightlylog; matlab_run$i" | tee ${ISSM_DIR_WIN}/nightlylog/matlab_log$i.log &
+			$MATLAB_PATH/bin/matlab -nodesktop -nosplash -nojvm -r "addpath ${ISSM_DIR_WIN}/src/m/dev; devpath; addpath ${ISSM_DIR_WIN}/nightlylog; matlab_run$i" -logfile ${ISSM_DIR_WIN}/nightlylog/matlab_log$i.log &
 		else
-			$MATLAB_PATH/bin/matlab -nodisplay -nosplash -r "addpath ${ISSM_DIR}/src/m/dev; devpath; addpath ${ISSM_DIR}/nightlylog; matlab_run$i" | tee ${ISSM_DIR}/nightlylog/matlab_log$i.log &
+			$MATLAB_PATH/bin/matlab -nodisplay -nosplash -r "addpath ${ISSM_DIR}/src/m/dev; devpath; addpath ${ISSM_DIR}/nightlylog; matlab_run$i" &> ${ISSM_DIR}/nightlylog/matlab_log$i.log &
 		fi
 	done
@@ -384,4 +385,5 @@
 		while [[ $timer -lt $max_time && -n "${pid}" ]]; do
 			pid=$(ps -W | grep MATLAB | awk '{print $1}')
+			timer=$((timer + 1))
 			sleep 1;
 		done