Index: /issm/trunk-jpl/jenkins/jenkins.sh
===================================================================
--- /issm/trunk-jpl/jenkins/jenkins.sh	(revision 26777)
+++ /issm/trunk-jpl/jenkins/jenkins.sh	(revision 26778)
@@ -346,5 +346,9 @@
 		cd $ISSM_DIR/test/NightlyRun
 
-		$MATLAB_PATH/bin/matlab -nodisplay -nosplash -nojvm -r "addpath ${ISSM_DIR}/src/m/dev; devpath; addpath ${ISSM_DIR}/nightlylog; matlab_run$i" &> ${ISSM_DIR}/nightlylog/matlab_log$i.log
+		if [[ "${OS}" == CYGWIN* || ${MINGW} -eq 1 ]]; then
+			$MATLAB_PATH/bin/matlab -nodesktop -nosplash -nojvm -r "addpath ${ISSM_DIR_WIN}/src/m/dev; devpath; addpath ${ISSM_DIR_WIN}/nightlylog; matlab_run$i" &> ${ISSM_DIR}/nightlylog/matlab_log$i.log
+		else
+			$MATLAB_PATH/bin/matlab -nodisplay -nosplash -nojvm -r "addpath ${ISSM_DIR}/src/m/dev; devpath; addpath ${ISSM_DIR}/nightlylog; matlab_run$i" &> ${ISSM_DIR}/nightlylog/matlab_log$i.log
+		fi
 	done
 
@@ -376,5 +380,5 @@
 		# Time out after $max_time seconds because sometimes multiple MATLAB processes get locked in race condition
 		timer=0
-		max_time=10800
+		max_time=7200
 		while [[ $timer -lt $max_time && -n "${pid}" ]]; do
 			pid=$(ps -W | grep MATLAB | awk '{print $1}')