Index: /issm/trunk-jpl/externalpackages/codipack/install.sh =================================================================== --- /issm/trunk-jpl/externalpackages/codipack/install.sh (revision 26034) +++ /issm/trunk-jpl/externalpackages/codipack/install.sh (revision 26035) @@ -5,8 +5,8 @@ # Cleanup from previous installation -rm -rf install CoDiPack-$VER.tar.gz +rm -rf src CoDiPack-$VER.tar.gz #Download development version -svn co https://github.com/SciCompKL/CoDiPack.git/trunk install +svn co https://github.com/SciCompKL/CoDiPack.git/trunk src ## Download source Index: /issm/trunk-jpl/externalpackages/medipack/install.sh =================================================================== --- /issm/trunk-jpl/externalpackages/medipack/install.sh (revision 26034) +++ /issm/trunk-jpl/externalpackages/medipack/install.sh (revision 26035) @@ -3,6 +3,6 @@ #Some cleanup -rm -rf install +rm -rf src #Download development version -svn co https://github.com/SciCompKL/MeDiPack/trunk install +svn co https://github.com/SciCompKL/MeDiPack/trunk src Index: /issm/trunk-jpl/jenkins/linux64_caladan =================================================================== --- /issm/trunk-jpl/jenkins/linux64_caladan (revision 26034) +++ /issm/trunk-jpl/jenkins/linux64_caladan (revision 26035) @@ -16,4 +16,5 @@ --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \ --with-metis-dir=$ISSM_DIR/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install \ --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/linux64_caladan_ampi =================================================================== --- /issm/trunk-jpl/jenkins/linux64_caladan_ampi (revision 26034) +++ /issm/trunk-jpl/jenkins/linux64_caladan_ampi (revision 26035) @@ -19,4 +19,5 @@ --with-matlab-dir=$MATLAB_PATH \ --with-metis-dir=$ISSM_DIR/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include \ --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib -lmpi" \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-adolc-ampion =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-adolc-ampion (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-adolc-ampion (revision 26035) @@ -23,4 +23,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-basic =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-basic (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-basic (revision 26035) @@ -17,4 +17,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-binaries-matlab =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-binaries-matlab (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-binaries-matlab (revision 26035) @@ -24,4 +24,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-binaries-python =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-binaries-python (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-binaries-python (revision 26035) @@ -22,4 +22,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-dakota =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-dakota (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-dakota (revision 26035) @@ -19,4 +19,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-examples =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-examples (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-examples (revision 26035) @@ -21,4 +21,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-full =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-full (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-full (revision 26035) @@ -22,4 +22,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-full-valgrind =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-full-valgrind (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-full-valgrind (revision 26035) @@ -22,4 +22,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-python =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-python (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-python (revision 26035) @@ -16,4 +16,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/pine_island-mac-solid_earth =================================================================== --- /issm/trunk-jpl/jenkins/pine_island-mac-solid_earth (revision 26034) +++ /issm/trunk-jpl/jenkins/pine_island-mac-solid_earth (revision 26035) @@ -19,4 +19,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampioff =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampioff (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampioff (revision 26035) @@ -21,4 +21,5 @@ --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampion =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampion (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampion (revision 26035) @@ -22,4 +22,5 @@ --with-ampi-dir=${ISSM_DIR}/externalpackages/adjoinablempi/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-basic =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-basic (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-basic (revision 26035) @@ -16,4 +16,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-binaries =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-binaries (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-binaries (revision 26035) @@ -25,4 +25,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-binaries-python =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-binaries-python (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-binaries-python (revision 26035) @@ -23,4 +23,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-codipack =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-codipack (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-codipack (revision 26035) @@ -20,4 +20,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ @@ -27,6 +28,6 @@ --with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \ --with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \ - --with-medipack-dir="${ISSM_DIR}/externalpackages/medipack/install" \ - --with-codipack-dir="${ISSM_DIR}/externalpackages/codipack/install" \ + --with-medipack-dir="${ISSM_DIR}/externalpackages/medipack/src" \ + --with-codipack-dir="${ISSM_DIR}/externalpackages/codipack/src" \ ' Index: /issm/trunk-jpl/jenkins/ross-debian_linux-dakota =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-dakota (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-dakota (revision 26035) @@ -21,4 +21,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-full =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-full (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-full (revision 26035) @@ -22,4 +22,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-full-valgrind =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-full-valgrind (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-full-valgrind (revision 26035) @@ -22,4 +22,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-gia =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-gia (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-gia (revision 26035) @@ -19,4 +19,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-iceocean =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-iceocean (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-iceocean (revision 26035) @@ -17,4 +17,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-python =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-python (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-python (revision 26035) @@ -16,4 +16,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ Index: /issm/trunk-jpl/jenkins/ross-debian_linux-solid_earth =================================================================== --- /issm/trunk-jpl/jenkins/ross-debian_linux-solid_earth (revision 26034) +++ /issm/trunk-jpl/jenkins/ross-debian_linux-solid_earth (revision 26035) @@ -19,4 +19,5 @@ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ + --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \