/*! \file MasstransportAnalysis.h 
 *  \brief: header file for generic external result object
 */

#ifndef _MasstransportAnalysis_
#define _MasstransportAnalysis_

/*Headers*/
#include "./Analysis.h"

class MasstransportAnalysis: public Analysis{

	public:
		/*Model processing*/
		void CreateConstraints(Constraints* constraints,IoModel* iomodel);
		void CreateLoads(Loads* loads, IoModel* iomodel);
		void CreateNodes(Nodes* nodes,IoModel* iomodel,bool isamr=false);
		int  DofsPerNode(int** doflist,int domaintype,int approximation);
		void UpdateElements(Elements* elements,Inputs* inputs,IoModel* iomodel,int analysis_counter,int analysis_type);
		void UpdateParameters(Parameters* parameters,IoModel* iomodel,int solution_enum,int analysis_enum);

		/*Finite element Analysis*/
		void           Core(FemModel* femmodel);
		ElementVector* CreateDVector(Element* element);
		ElementMatrix* CreateJacobianMatrix(Element* element);
		ElementMatrix* CreateKMatrix(Element* element);
		ElementMatrix* CreateKMatrixCG(Element* element);
		ElementMatrix* CreateKMatrixDG(Element* element);
		ElementVector* CreatePVector(Element* element);
		ElementVector* CreatePVectorCG(Element* element);
		ElementVector* CreatePVectorDG(Element* element);
		void           GetSolutionFromInputs(Vector<IssmDouble>* solution,Element* element);
		void           GradientJ(Vector<IssmDouble>* gradient,Element*  element,int control_type,int control_interp,int control_index);
		void           InputUpdateFromSolution(IssmDouble* solution,Element* element);
		void           UpdateConstraints(FemModel* femmodel);

		/*FCT*/
		ElementMatrix* CreateFctKMatrix(Element* element);
		ElementMatrix* CreateMassMatrix(Element* element);
		ElementVector* CreateFctPVector(Element* element);
		void           FctKMatrix(Matrix<IssmDouble>** pKff,Matrix<IssmDouble>** pKfs,FemModel* femmodel);
		void				FctPVector(Vector<IssmDouble>** ppf,FemModel* femmodel);
		void           MassMatrix(Matrix<IssmDouble>** pMff,FemModel* femmodel);
};
#endif
