Index: /issm/trunk-jpl/externalpackages/curl/install-7-linux-static.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/curl/install-7-linux-static.sh	(revision 25784)
+++ /issm/trunk-jpl/externalpackages/curl/install-7-linux-static.sh	(revision 25785)
@@ -8,5 +8,5 @@
 
 # Download source
-$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/curl-${VER}.tar.gz" "curl-${VER}.tar.gz"
+# $ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/curl-${VER}.tar.gz" "curl-${VER}.tar.gz"
 
 # Unpack source
Index: /issm/trunk-jpl/externalpackages/dakota/install-6.2-linux-static.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-6.2-linux-static.sh	(revision 25784)
+++ /issm/trunk-jpl/externalpackages/dakota/install-6.2-linux-static.sh	(revision 25785)
@@ -13,5 +13,4 @@
 export BOOST_ROOT=${ISSM_DIR}/externalpackages/boost/install
 export CXXFLAGS='-std=c++98' # Setting CXXFLAGS to deal with C++11 incompatibility with MATLAB's Boost (absolutely necessary for this version)
-#export CXXFLAGS='-std=c++11'
 export DAK_BUILD=${DAK_ROOT}/build
 export DAK_INSTALL=${DAK_ROOT}/install
Index: /issm/trunk-jpl/externalpackages/gmt/configs/6/static/src/CMakeLists.txt
===================================================================
--- /issm/trunk-jpl/externalpackages/gmt/configs/6/static/src/CMakeLists.txt	(revision 25785)
+++ /issm/trunk-jpl/externalpackages/gmt/configs/6/static/src/CMakeLists.txt	(revision 25785)
@@ -0,0 +1,730 @@
+#
+#
+# Copyright (c) 1991-2019 by the GMT Team (https://www.generic-mapping-tools.org/team.html)
+# See LICENSE.TXT file for copying and redistribution conditions.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License as published by
+# the Free Software Foundation; version 3 or any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Lesser General Public License for more details.
+#
+# Contact info: www.generic-mapping-tools.org
+#-------------------------------------------------------------------------------
+#
+# To modify the cmake process: Edit your cmake/ConfigUser.cmake file
+#
+# src/CMakeLists.txt
+#
+
+include (ManageString)
+include (GmtHelperMacros)
+
+if (UNIX AND NOT APPLE)
+	set (LINUX TRUE)
+else (UNIX AND NOT APPLE)
+	set (LINUX FALSE)
+endif (UNIX AND NOT APPLE)
+
+# On Windows do not prefix the DLLs with the 'lib' prefix
+if (WIN32)
+	set(LIB_PREFIX "")
+else (WIN32)
+	set(LIB_PREFIX "lib")
+endif (WIN32)
+
+# Include CREATE_DEBUG_SYM macro and set DEBUG_BUILD
+include (CreateDebugSym)
+
+# Find executable needed by gmt
+find_program (OGR2OGR ogr2ogr)
+if (NOT OGR2OGR)
+	message (WARNING "Cannot find program ogr2ogr - gmt will be unable to convert Shapefiles to GMT/OGR format")
+	set (GMT_CONFIG_OGR2OGR_MESSAGE "no" CACHE INTERNAL "OGR2OGR config message")
+else (NOT OGR2OGR)
+	execute_process(COMMAND ogr2ogr --version OUTPUT_VARIABLE answer OUTPUT_STRIP_TRAILING_WHITESPACE)
+	string (REGEX MATCH "[0-9]+\\.[0-9]+\\.[0-9]+" answer "${answer}")
+	set (GMT_CONFIG_OGR2OGR_MESSAGE "yes (${answer})" CACHE INTERNAL "OGR2OGR config message")
+endif (NOT OGR2OGR)
+
+# Find executable needed by psconvert
+find_program (GDAL_TRANSLATE gdal_translate)
+if (NOT GDAL_TRANSLATE)
+	message (WARNING "Cannot find program gdal_translate - psconvert will be unable to convert TIFF to GeoTIFF")
+	set (GMT_CONFIG_GDAL_TRANSLATE_MESSAGE "no" CACHE INTERNAL "GDAL_TRANSLATE config message")
+else (NOT GDAL_TRANSLATE)
+	execute_process(COMMAND gdal_translate --version OUTPUT_VARIABLE answer OUTPUT_STRIP_TRAILING_WHITESPACE)
+	string (REGEX MATCH "[0-9]+\\.[0-9]+\\.[0-9]+" answer "${answer}")
+	set (GMT_CONFIG_GDAL_TRANSLATE_MESSAGE "yes (${answer})" CACHE INTERNAL "GDAL_TRANSLATE config message")
+endif (NOT GDAL_TRANSLATE)
+
+# Find executables needed by movie
+find_program (GM gm)
+if (NOT GM)
+	message (WARNING "Cannot find GraphicsMagick program gm - gmt movie will be unable to make animated GIFs")
+	set (GMT_CONFIG_GM_MESSAGE "no" CACHE INTERNAL "GM config message")
+else (NOT GM)
+	execute_process(COMMAND gm help OUTPUT_VARIABLE answer OUTPUT_STRIP_TRAILING_WHITESPACE)
+	string (REGEX MATCH "[0-9]+\\.[0-9]+\\.[0-9]+" answer "${answer}")
+	set (GMT_CONFIG_GM_MESSAGE "yes (${answer})" CACHE INTERNAL "GM config message")
+endif (NOT GM)
+
+find_program (FFMPEG ffmpeg)
+if (NOT FFMPEG)
+	message (WARNING "Cannot find ffmpeg - gmt movie will be unable to make movies from frames")
+	set (GMT_CONFIG_FFMPEG_MESSAGE "no" CACHE INTERNAL "FFMPEG config message")
+else (NOT FFMPEG)
+	execute_process(COMMAND ffmpeg -version OUTPUT_VARIABLE answer OUTPUT_STRIP_TRAILING_WHITESPACE)
+	string (REGEX MATCH "[0-9]+\\.[0-9]+\\.[0-9]+" answer "${answer}")
+	set (GMT_CONFIG_FFMPEG_MESSAGE "yes (${answer})" CACHE INTERNAL "FFMPEG config message")
+endif (NOT FFMPEG)
+
+# Find executable needed by docs
+if (LINUX)
+	find_program (XDGOPEN xdg-open)
+	if (NOT XDGOPEN)
+		message (WARNING "Cannot find program xdg-open - gmt docs will be unable to open the documentation")
+		set (GMT_CONFIG_OPEN_MESSAGE "no" CACHE INTERNAL "OPEN config message")
+	else (NOT XDGOPEN)
+		set (GMT_CONFIG_OPEN_MESSAGE "yes" CACHE INTERNAL "OPEN config message")
+	endif (NOT XDGOPEN)
+else (LINUX)
+	set (GMT_CONFIG_OPEN_MESSAGE "yes" CACHE INTERNAL "OPEN config message")
+endif (LINUX)
+
+# Find executable needed by psconvert
+if (WIN32)
+	set (GMT_CONFIG_GS_MESSAGE "yes" CACHE INTERNAL "GS config message")
+else (WIN32)
+	find_program (GS gs)
+	if (NOT GS)
+		message (WARNING "Cannot find ghostscript program gs - gmt psconvert will be unable to convert PostScript to other formats")
+		set (GMT_CONFIG_GS_MESSAGE "no" CACHE INTERNAL "GS config message")
+	else (NOT GS)
+		execute_process(COMMAND gs --version OUTPUT_VARIABLE answer OUTPUT_STRIP_TRAILING_WHITESPACE)
+		set (GMT_CONFIG_GS_MESSAGE "yes (${answer})" CACHE INTERNAL "GS config message")
+	endif (NOT GS)
+endif (WIN32)
+
+# Find libraries
+message (STATUS "Searching dependent libraries. This may take a few minutes...")
+# NetCDF is required
+find_package (NETCDF REQUIRED)
+include_directories (${NETCDF_INCLUDE_DIR})
+
+# libcurl is required since 5.4
+include_directories ($ENV{CURL_INCLUDE_DIRS})
+list (APPEND GMT_OPTIONAL_LIBRARIES $ENV{CURL_LIBRARIES})
+
+if (NOT DEFINED GMT_EXCLUDE_GDAL)
+	find_package (GDAL)
+endif (NOT DEFINED GMT_EXCLUDE_GDAL)
+if (GDAL_FOUND)
+	set (HAVE_GDAL TRUE CACHE INTERNAL "System has GDAL")
+	include_directories (${GDAL_INCLUDE_DIR})
+	list (APPEND GMT_OPTIONAL_LIBRARIES ${GDAL_LIBRARIES})
+endif (GDAL_FOUND)
+
+if (NOT DEFINED GMT_EXCLUDE_PCRE)
+	find_package (PCRE)
+endif (NOT DEFINED GMT_EXCLUDE_PCRE)
+if (NOT PCRE_FOUND AND NOT DEFINED GMT_EXCLUDE_PCRE2)
+	find_package (PCRE2)
+endif (NOT PCRE_FOUND AND NOT DEFINED GMT_EXCLUDE_PCRE2)
+if (PCRE_FOUND)
+	set (HAVE_PCRE TRUE CACHE INTERNAL "System has PCRE")
+	set (GMT_CONFIG_REGEX_MESSAGE "PCRE (${PCRE_LIBRARIES})"
+		CACHE INTERNAL "Regex config message")
+	include_directories (${PCRE_INCLUDE_DIR})
+	list (APPEND GMT_OPTIONAL_LIBRARIES ${PCRE_LIBRARIES})
+elseif (PCRE2_FOUND)
+	set (HAVE_PCRE2 TRUE CACHE INTERNAL "System has PCRE2")
+	set (GMT_CONFIG_REGEX_MESSAGE "PCRE2 (${PCRE2_LIBRARIES})"
+		CACHE INTERNAL "Regex config message")
+	include_directories (${PCRE2_INCLUDE_DIR})
+	list (APPEND GMT_OPTIONAL_LIBRARIES ${PCRE2_LIBRARIES})
+else (PCRE_FOUND)
+	find_package (REGEX)
+	if (REGEX_FOUND)
+		set (HAVE_POSIX_ERE TRUE CACHE INTERNAL "System has regex.h")
+		set (GMT_CONFIG_REGEX_MESSAGE "POSIX Regex (${REGEX_INCLUDE_DIR}/regex.h)"
+			CACHE INTERNAL "Regex config message")
+		include_directories (${REGEX_INCLUDE_DIR})
+		# I don't think its needed but just in case:
+		list (APPEND GMT_OPTIONAL_LIBRARIES ${REGEX_LIBRARIES})
+	else (REGEX_FOUND)
+		set (GMT_CONFIG_REGEX_MESSAGE "unsupported"
+			CACHE INTERNAL "Regex config message")
+	endif (REGEX_FOUND)
+endif (PCRE_FOUND)
+
+if (NOT DEFINED GMT_EXCLUDE_FFTW3)
+	find_package (FFTW3)
+endif (NOT DEFINED GMT_EXCLUDE_FFTW3)
+if (FFTW3_FOUND)
+	set (HAVE_FFTW3F TRUE CACHE INTERNAL "System has single precision FFTW")
+	if (FFTW3F_THREADS_LIBRARY)
+		set (HAVE_FFTW3F_THREADS TRUE CACHE INTERNAL "System has single precision threaded FFTW")
+	endif (FFTW3F_THREADS_LIBRARY)
+	include_directories (${FFTW3_INCLUDE_DIR})
+	list (APPEND GMT_OPTIONAL_LIBRARIES ${FFTW3F_LIBRARIES})
+endif (FFTW3_FOUND)
+
+if (NOT DEFINED GMT_EXCLUDE_LAPACK)
+	find_package (LAPACK)
+endif (NOT DEFINED GMT_EXCLUDE_LAPACK)
+if (LAPACK_FOUND)
+	set (HAVE_LAPACK TRUE CACHE INTERNAL "System has LAPACK")
+	set (GMT_CONFIG_LAPACK_MESSAGE "yes" CACHE INTERNAL "LAPACK config message")
+	include_directories (${LAPACK_INCLUDE_DIR})
+	list (APPEND GMT_OPTIONAL_LIBRARIES ${LAPACK_LIBRARIES})
+else (LAPACK_FOUND)
+	if (LAPACK_LIBRARY)
+		# Set in ConfigUser.cmake
+		set (HAVE_LAPACK TRUE CACHE INTERNAL "System has LAPACK")
+		set (GMT_CONFIG_LAPACK_MESSAGE "yes" CACHE INTERNAL "LAPACK config message")
+		list (APPEND GMT_OPTIONAL_LIBRARIES ${LAPACK_LIBRARY})
+	else (LAPACK_LIBRARY)
+		set (GMT_CONFIG_LAPACK_MESSAGE "no" CACHE INTERNAL "LAPACK config message")
+	endif (LAPACK_LIBRARY)
+endif (LAPACK_FOUND)
+
+if (NOT DEFINED GMT_EXCLUDE_BLAS)
+	find_package (BLAS)
+endif (NOT DEFINED GMT_EXCLUDE_BLAS)
+if (BLAS_FOUND)
+	set (HAVE_BLAS TRUE CACHE INTERNAL "System has BLAS")
+	set (GMT_CONFIG_BLAS_MESSAGE "yes" CACHE INTERNAL "BLAS config message")
+	include_directories (${BLAS_INCLUDE_DIR})
+	list (APPEND GMT_OPTIONAL_LIBRARIES ${BLAS_LIBRARIES})
+else (BLAS_FOUND)
+	if (BLAS_LIBRARY)
+		# Set in ConfigUser.cmake
+		set (HAVE_BLAS TRUE CACHE INTERNAL "System has BLAS")
+		set (GMT_CONFIG_BLAS_MESSAGE "yes" CACHE INTERNAL "BLAS config message")
+		list (APPEND GMT_OPTIONAL_LIBRARIES ${BLAS_LIBRARY})
+	else (BLAS_LIBRARY)
+		set (GMT_CONFIG_BLAS_MESSAGE "no" CACHE INTERNAL "BLAS config message")
+	endif (BLAS_LIBRARY)
+endif (BLAS_FOUND)
+
+if (NOT DEFINED GMT_EXCLUDE_ZLIB)
+	find_package (ZLIB)
+endif (NOT DEFINED GMT_EXCLUDE_ZLIB)
+if (ZLIB_FOUND)
+	set (HAVE_ZLIB TRUE CACHE INTERNAL "System has ZLIB")
+	include_directories (${ZLIB_INCLUDE_DIRS})
+endif (ZLIB_FOUND)
+
+
+if (APPLE)
+	# Accelerate framework
+	find_library (ACCELERATE_FRAMEWORK Accelerate)
+	mark_as_advanced (ACCELERATE_FRAMEWORK)
+	list (APPEND GMT_OPTIONAL_LIBRARIES ${ACCELERATE_FRAMEWORK})
+endif (APPLE)
+
+if (DEFINED GMT_ENABLE_OPENMP)
+	set (GMT_OPENMP TRUE CACHE INTERNAL "Turn on GMT OpenMP")
+endif (DEFINED GMT_ENABLE_OPENMP)
+find_package (OpenMP)
+if (OPENMP_FOUND AND GMT_OPENMP)
+	set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
+	set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
+	set (CMAKE_SHARED_LINKER_FLAGS "${CMAKE_SHARED_LINKER_FLAGS} ${OpenMP_SHARED_LINKER_FLAGS}")
+	set (HAVE_OPENMP TRUE CACHE INTERNAL "OpenMP enabled." FORCE)
+	set (GMT_CONFIG_OPENMP_MESSAGE "enabled"
+		CACHE INTERNAL "OPENMP config message")
+	if (WIN32 AND OMP_DLL_LOC)
+		# UGLY AND RISKY PATCH FOR THE CPACK BUG OF NOT COPYING THE OMP DLL. THIS PATCH RELIES
+		# ON THE SETTING OF THE OMP_DLL_LOC VARIABLE IN ConfigUser.cmake. MINE HAS:
+		# set (OMP_DLL_LOC "C:/Program Files (x86)/Microsoft Visual Studio 12.0/VC/redist/x64/Microsoft.VC120.OPENMP/vcomp120.dll")
+		install(FILES ${OMP_DLL_LOC} DESTINATION bin COMPONENT Libraries)
+	endif (WIN32 AND OMP_DLL_LOC)
+else (OPENMP_FOUND AND GMT_OPENMP)
+	set (HAVE_OPENMP FALSE CACHE INTERNAL "OpenMP disabled." FORCE)
+	set (GMT_CONFIG_OPENMP_MESSAGE "disabled"
+		CACHE INTERNAL "OPENMP config message")
+endif (OPENMP_FOUND AND GMT_OPENMP)
+if (OPENMP_FOUND AND NOT GMT_OPENMP)
+	message (STATUS "User variable GMT_OPENMP not set: disabling OpenMP.")
+	set (GMT_CONFIG_OPENMP_MESSAGE "disabled (GMT_OPENMP not set)"
+		CACHE INTERNAL "OPENMP config message")
+endif (OPENMP_FOUND AND NOT GMT_OPENMP)
+
+find_package(GLIB COMPONENTS gthread)
+if (GLIB_FOUND AND GMT_USE_THREADS)
+	set (HAVE_GLIB_GTHREAD TRUE CACHE INTERNAL "System has GLIB component gthread")
+	include_directories (${GLIB_INCLUDE_DIRS})
+	list (APPEND GMT_OPTIONAL_LIBRARIES ${GLIB_LIBRARIES})
+	set (GMT_CONFIG_GTHREAD_MESSAGE "enabled"
+		CACHE INTERNAL "GTHREAD config message")
+endif (GLIB_FOUND AND GMT_USE_THREADS)
+if (GLIB_FOUND AND NOT GMT_USE_THREADS)
+	set (HAVE_GLIB_GTHREAD FALSE CACHE INTERNAL "User disabled threads")
+	message (STATUS "User variable GMT_USE_THREADS not set: disabling GThread.")
+	set (GMT_CONFIG_GTHREAD_MESSAGE "disabled"
+		CACHE INTERNAL "GTHREAD config message")
+endif (GLIB_FOUND AND NOT GMT_USE_THREADS)
+if (GMT_USE_THREADS AND NOT GLIB_FOUND)
+	message (FATAL_ERROR "User variable GMT_USE_THREADS set but GLIB component gthread not found.")
+	set (GMT_CONFIG_GTHREAD_MESSAGE "unavailable"
+		CACHE INTERNAL "GTHREAD config message")
+endif (GMT_USE_THREADS AND NOT GLIB_FOUND)
+
+# check for math and POSIX functions
+include(ConfigureChecks)
+
+include_directories (${GMT_SOURCE_DIR}/src)
+include_directories (${CMAKE_CURRENT_BINARY_DIR})
+set(CMAKE_INCLUDE_CURRENT_DIR TRUE)
+
+# Examples and tests depend on Shorelines
+find_package (GSHHG)
+if (DO_EXAMPLES OR DO_TESTS AND NOT GSHHG_FOUND)
+	message (FATAL_ERROR "Cannot proceed without GSHHG Shorelines. "
+		"Need to either set GSHHG_ROOT or disable tests.")
+endif (DO_EXAMPLES OR DO_TESTS AND NOT GSHHG_FOUND)
+
+# Examples and tests depend on DCW
+find_package (DCW)
+if (DO_EXAMPLES OR DO_TESTS AND NOT DCW_FOUND)
+	message (FATAL_ERROR "Cannot proceed without DCW polygons. "
+		"Need to either set DCW_ROOT or disable tests."
+		"Obtain dcw-gmt-<version>.tar.gz or dcw-gmt-<version>.zip from ftp://ftp.soest.hawaii.edu/gmt and make DCW_ROOT variable point to the directory where you unarchived the files")
+endif (DO_EXAMPLES OR DO_TESTS AND NOT DCW_FOUND)
+
+if (DO_API_TESTS)
+	# These lines are temporarily here for the beta release - comment to avoid in the build
+	set (GMT_DEMOS_SRCS testapi.c testpsl.c testgmt.c testgmtshell.c testgmtio.c testgrdio.c testio.c
+		testapiconv.c example1.c testapi_matrix.c testapi_matrix_plot.c testapi_vector.c test_JL.c testapi_mixmatrix.c
+		test_walter.c testapi_usergrid.c testapi_userdataset.c testapi_uservectors.c)
+endif (DO_API_TESTS)
+
+if (NOT LICENSE_RESTRICTED) # off
+	# enable Shewchuk's triangle routine
+	set (GMT_TRIANGULATE "Shewchuk" PARENT_SCOPE)
+	set (GMT_TRIANGLE_SRCS triangle.c triangle.h)
+	list (APPEND GMT_EXTRA_LICENSE_FILES ${CMAKE_CURRENT_SOURCE_DIR}/README.TRIANGLE)
+	set (GMT_EXTRA_LICENSE_FILES ${GMT_EXTRA_LICENSE_FILES} PARENT_SCOPE)
+else (NOT LICENSE_RESTRICTED) # on
+	# disable Shewchuk's triangle routine
+	set (GMT_TRIANGULATE "Watson" PARENT_SCOPE)
+endif (NOT LICENSE_RESTRICTED)
+
+# Note: Developers can set EXTRA_MODULES in ConfigUser.cmake to test new modules
+set (GMT_PROGS_SRCS blockmean.c blockmedian.c blockmode.c docs.c dimfilter.c filter1d.c grd2kml.c
+	fitcircle.c gmt2kml.c gmtconvert.c gmtlogo.c gmtmath.c gmtselect.c gmtsimplify.c
+	gmtspatial.c gmtconnect.c gmtregress.c gmtvector.c gmtwhich.c grd2cpt.c
+	grd2xyz.c grdblend.c grdclip.c grdcut.c grdedit.c grdfft.c grdfill.c grdfilter.c
+	grdgradient.c grdhisteq.c grdinfo.c grdlandmask.c grdmask.c grdmath.c
+	grdpaste.c grdproject.c grdsample.c grdconvert.c grdtrack.c movie.c
+	grdtrend.c grdvolume.c greenspline.c kml2gmt.c makecpt.c mapproject.c
+	gmtinfo.c nearneighbor.c project.c psconvert.c sample1d.c spectrum1d.c
+	sph2grd.c sphdistance.c sphinterpolate.c sphtriangulate.c splitxyz.c
+	surface.c trend1d.c trend2d.c triangulate.c xyz2grd.c gmtdefaults.c gmtget.c
+	gmtset.c grdcontour.c grdimage.c grdvector.c grdview.c psbasemap.c psclip.c
+	pscoast.c pscontour.c psevents.c pshistogram.c psimage.c psmask.c psrose.c psscale.c
+	pssolar.c psternary.c pstext.c pswiggle.c psxy.c psxyz.c pslegend.c ${EXTRA_MODULES})
+
+# Legacy modules for which to install compatibility links via
+# install_module_symlink
+set (GMT_COMPAT_MODULES minmax gmt2rgb gmtstitch gmtdp grdreformat ps2raster)
+
+# libpslib
+set (GMT_PSL_SRCS postscriptlight.c declspec.h psl_config.h PSL_Standard+.h
+	PSL_Standard.h PSL_ISOLatin1+.h PSL_ISOLatin1.h PSL_ISO-8859-1.h
+	PSL_ISO-8859-2.h PSL_ISO-8859-3.h PSL_ISO-8859-4.h PSL_ISO-8859-5.h
+	PSL_ISO-8859-6.h PSL_ISO-8859-7.h PSL_ISO-8859-8.h PSL_ISO-8859-9.h
+	PSL_ISO-8859-10.h PSL_ISO-8859-13.h PSL_ISO-8859-14.h PSL_ISO-8859-15.h
+	PSL_strings.h PSL_patterns.h)
+
+set (GMT_MBSYSTEM_SRCS gmt_mbsystem_module.c gmt_mbsystem_module.h)
+
+# libgmt
+set (GMT_LIB_SRCS block_subs.h common_byteswap.h common_math.h
+	common_runpath.h common_sighandler.c common_string.h clear.c begin.c
+	gmt_color_rgb.h gmt_colornames.h
+	gmt_modern.c end.c declspec.h gmt_hidden.h gmt_remote.h gmt_remote.c
+	figure.c gmt_dev.h gmt_common.h gmt_constants.h compat/qsort.h
+	gmt_contour.h gmt_customio.h gmt_datums.h gmt_dcw.h gmt_decorate.h gmt_defaults.h
+	gmt_ellipsoids.h gmt_error.h gmt_gdalread.h gmt_glib.h gmt_grd.h gmt_grdio.h gmt_hash.h
+	gmt_internals.h gmt_io.h gmt_macros.h gmt_media_name.h gmt_modern.h
+	gmt_media_size.h gmt_mgg_header2.h gmt_sharedlibs.h gmt_memory.h gmt_mb.h
+	gmt_core_module.h gmt_nan.h gmt_notposix.h gmt_pennames.h gmt_enum_dict.h
+	gmt_plot.h gmt_project.h gmt_prototypes.h gmt_psl.h gmt_shore.h gmt_gsformats.h
+	gmt_symbol.h gmt_synopsis.h gmt_texture.h gmt_time.h gmt_cpt_masters.h
+	gmt_types.h gmt_unique.h gmt_version.h gshhg_version.h postscriptlight.h
+	s_rint.h triangle.h gmt.h gmt_resources.h gmt_private.h subplot.c
+	gmt_error_codes.h gmt_api.c gmt_bcr.c gmt_calclock.c gmt_cdf.c gmt_compat.c
+	gmt_customio.c gmt_dcw.c gmt_error.c gmt_fft.c gmt_grdio.c gmt_io.c
+	gmt_memory.c gmt_nc.c gmt_notposix.c gmt_proj.c gmt_shore.c gmt_sph.c
+	gmt_stat.c gmt_support.c gmt_regexp.c gmt_vector.c gmt_parse.c inset.c
+	gmt_error_codes.c gshhg_version.c gmtread.c gmtwrite.c common_math.c
+	common_runpath.c common_sighandler.c common_string.c compat/qsort.c
+	gmt_sharedlibs.c gmt_core_module.c gmt_init.c gmt_map.c gmt_plot.c
+	kiss_fft/_kiss_fft_guts.h kiss_fft/kiss_fft.c kiss_fft/kiss_fft.h
+	kiss_fft/kiss_fftnd.c kiss_fft/kiss_fftnd.h
+	${GMT_TRIANGLE_SRCS} ${GMT_MBSYSTEM_SRCS})
+
+if (BUILD_SUPPLEMENTS)
+	# Needed in supplib, + supplements themselves
+	set (GMT_SUPPL_SRCS gmt_modern.c gmt_supplements_module.h gmt_supplements_module.c)
+endif (BUILD_SUPPLEMENTS)
+
+# dependencies on generated files
+set (GMT_GEN_HDRS gmt_keycases.h
+	gmt_keywords.h gmt_config.h
+	gmt_dimensions.h
+	CACHE INTERNAL "Autogenerated GMT headers")
+
+# Add commands to create header files
+
+add_custom_command (OUTPUT gmt_keycases.h gmt_keywords.h
+	COMMAND ${CMAKE_COMMAND}
+	-D GENERATE_COMMAND=gen_gmt_keywords_h
+	-D CMAKE_MODULE_PATH=${CMAKE_MODULE_PATH}
+	-D GMT_SRC=${GMT_SOURCE_DIR}
+	-P ${CMAKE_MODULE_PATH}/GmtGenExtraHeaders.cmake
+	DEPENDS gmt_keywords.txt gmt_keywords.d)
+
+add_custom_command (OUTPUT gmt_dimensions.h
+	COMMAND ${CMAKE_COMMAND}
+	-D GENERATE_COMMAND=gen_gmt_dimensions_h
+	-D CMAKE_MODULE_PATH=${CMAKE_MODULE_PATH}
+	-D GMT_SRC=${GMT_SOURCE_DIR}
+	-P ${CMAKE_MODULE_PATH}/GmtGenExtraHeaders.cmake
+	DEPENDS gmt_media_name.h gmt_pennames.h gmt_unique.h gmt_cpt_masters.h
+	gmt_keycases.h)
+	# depends on cached line numbers from these generated files:
+
+# autogenerated files target
+add_custom_target (gen_gmt_headers DEPENDS ${GMT_GEN_HDRS})
+
+# Configure header files to pass some of the CMake settings to the source code
+configure_file (gmt_config.h.in gmt_config.h)
+configure_file (psl_config.h.in psl_config.h)
+configure_file (gmt_version.h.in gmt_version.h)
+configure_file (isogmt.in isogmt${GMT_INSTALL_NAME_SUFFIX} @ONLY)
+configure_file (gmt-config.in gmt-config${GMT_INSTALL_NAME_SUFFIX} @ONLY)
+
+# gmtprogram
+set (GMT_PROGRAM ${GMT_SOURCE_DIR}/src/gmtprogram.c)
+
+# extra ugly definitions for triangle
+set_source_files_properties (triangle.c
+	PROPERTIES
+	COMPILE_DEFINITIONS "NO_TIMER;TRILIBRARY;REDUCED;CDT_ONLY;ANSI_DECLARATORS")
+
+# libpslib
+add_library (pslib
+	${GMT_GEN_HDRS}
+	${GMT_PSL_SRCS})
+
+add_dependencies (pslib gen_gmt_headers) # make pslib after gen_gmt_headers
+
+if (HAVE_M_LIBRARY)
+	# link the math library
+	target_link_libraries (pslib m)
+endif (HAVE_M_LIBRARY)
+
+if (HAVE_ZLIB)
+	# for DEFLATE encoding
+  target_link_libraries (pslib ${ZLIB_LIBRARIES})
+endif (HAVE_ZLIB)
+
+# set the build version (VERSION) and the API version (SOVERSION)
+set_target_properties (pslib
+	PROPERTIES
+	OUTPUT_NAME postscriptlight
+	PREFIX "${LIB_PREFIX}"
+	IMPORT_PREFIX "${LIB_PREFIX}"
+	VERSION ${GMT_LIB_VERSION}
+	SOVERSION ${GMT_LIB_SOVERSION}
+	DEFINE_SYMBOL "LIBRARY_EXPORTS")
+
+# If a renaming of the gmtpslpsl dll has been set in ConfigUser.cmake
+if (WIN32 AND PSL_DLL_RENAME)
+	set_target_properties (pslib PROPERTIES RUNTIME_OUTPUT_NAME ${PSL_DLL_RENAME})
+endif (WIN32 AND PSL_DLL_RENAME)
+
+if (BUILD_SUPPLEMENTS)
+	# supplement directories (only those, which are to be included in gmtlib)
+	# EXTRA_BUILD_DIRS are for testing new supplements that are not yet in
+	# subversion. See cmake/ConfigUserTemplate.cmake for setting this parameter.
+	set (GMT_SUPPL_DIRS geodesy gshhg img mgd77 potential segy seis
+		spotter x2sys ${EXTRA_BUILD_DIRS})
+endif (BUILD_SUPPLEMENTS)
+
+# path to all binary dirs (used to set PATH in test scripts)
+set (GMT_BINARY_DIR_PATH "${CMAKE_CURRENT_BINARY_DIR}/\${CMAKE_CONFIG_TYPE:-.}")
+
+if (BUILD_SUPPLEMENTS)
+	# process supplement directories
+	if (UNIX)
+		set (CMAKE_SHARED_MODULE_SUFFIX .so)
+	endif (UNIX)
+	foreach (_dir ${GMT_SUPPL_DIRS})
+		add_subdirectory (${_dir})
+		list (APPEND GMT_BINARY_DIR_PATH
+			"${CMAKE_CURRENT_BINARY_DIR}/${_dir}/\${CMAKE_CONFIG_TYPE:-.}")
+	endforeach (_dir)
+	# supplement library files
+	get_subdir_var_files (GMT_SUPPL_LIB_SRCS LIB_SRCS ${GMT_SUPPL_DIRS})
+
+	# include supplement directories
+	foreach (_dir ${GMT_SUPPL_DIRS})
+		include_directories (${CMAKE_CURRENT_BINARY_DIR}/${_dir})
+	endforeach (_dir)
+	# libgmtsuppl
+	if (WIN32)
+		add_library (supplib
+			${GMT_GEN_HDRS}
+			${GMT_SUPPL_SRCS}
+			${GMT_SUPPL_LIB_SRCS})
+	else (WIN32)
+		add_library (supplib MODULE
+			${GMT_GEN_HDRS}
+			${GMT_SUPPL_SRCS}
+			${GMT_SUPPL_LIB_SRCS})
+	endif (WIN32)
+
+	add_dependencies (supplib gen_gmt_headers) # make supplib after gen_gmt_headers
+	add_dependencies (supplib pslib) # make supplib after pslib
+	add_dependencies (supplib gmtlib) # make supplib after pslib
+
+	# No SOVERSION & VERSION for a MODULE, only for SHARED libs
+	target_link_libraries (supplib
+		gmtlib
+		pslib)
+
+	# Include any extra files that are listed in EXTRA_INCLUDE_GMTSUPPL defined in ConfigUser.cmake
+	# This include(s) will add new modules to the official GMT supplements
+	if (EXTRA_INCLUDE_GMTSUPPL)
+		foreach (_f ${EXTRA_INCLUDE_GMTSUPPL})
+			include (${_f})
+		endforeach(_f)
+	endif (EXTRA_INCLUDE_GMTSUPPL)
+
+	set_target_properties (supplib
+		PROPERTIES
+		OUTPUT_NAME supplements
+		RUNTIME_OUTPUT_NAME supplements
+		LIBRARY_OUTPUT_DIRECTORY plugins
+		RUNTIME_OUTPUT_DIRECTORY plugins
+		PREFIX ""
+		LINK_FLAGS "${USER_GMTLIB_LINK_FLAGS}"
+		DEFINE_SYMBOL "LIBRARY_EXPORTS")
+
+	if (WIN32 AND SUPP_DLL_RENAME)
+		set_target_properties (supplib PROPERTIES RUNTIME_OUTPUT_NAME ${SUPP_DLL_RENAME})
+	endif (WIN32 AND SUPP_DLL_RENAME)
+
+	if (HAVE_DLADDR AND HAVE_LIBDL)
+		# link the dynamic linking loader library
+		target_link_libraries (supplib dl)
+	endif (HAVE_DLADDR AND HAVE_LIBDL)
+
+	if (HAVE_M_LIBRARY)
+		# link the math library
+		target_link_libraries (supplib m)
+	endif (HAVE_M_LIBRARY)
+
+	# install target
+	install (TARGETS supplib
+		LIBRARY DESTINATION ${GMT_LIBDIR}/gmt${GMT_INSTALL_NAME_SUFFIX}/plugins # UNIX
+		COMPONENT Runtime
+		RUNTIME DESTINATION ${GMT_BINDIR}/gmt_plugins # Windows
+		COMPONENT Runtime)
+endif (BUILD_SUPPLEMENTS)
+
+# Include any extra files that are listed in EXTRA_INCLUDE_NEWSUPPL defined in ConfigUser.cmake
+# This include(s) will create new pluggins
+if (EXTRA_INCLUDE_NEWSUPPL)
+	foreach (_f ${EXTRA_INCLUDE_NEWSUPPL})
+		include (${_f})
+	endforeach(_f)
+endif (EXTRA_INCLUDE_NEWSUPPL)
+
+
+# make UNIX PATH variable
+string (REPLACE ";" ":" GMT_BINARY_DIR_PATH "${GMT_BINARY_DIR_PATH}")
+set (GMT_BINARY_DIR_PATH ${GMT_BINARY_DIR_PATH} CACHE INTERNAL
+	"UNIX PATH to all binary dirs")
+
+# libgmt
+add_library (gmtlib
+	${GMT_GEN_HDRS}
+	${GMT_LIB_SRCS}
+	${GMT_PROGS_SRCS})
+
+add_dependencies (gmtlib gen_gmt_headers) # make gmtlib after gen_gmt_headers
+add_dependencies (gmtlib pslib) # make gmtlib after pslib
+
+target_link_libraries (gmtlib
+	${NETCDF_LIBRARIES}
+	${GMT_OPTIONAL_LIBRARIES}
+	pslib)
+
+if (HAVE_M_LIBRARY)
+	# link the math library
+	target_link_libraries (gmtlib m)
+endif (HAVE_M_LIBRARY)
+
+# set the build version (VERSION) and the API version (SOVERSION)
+set_target_properties (gmtlib
+	PROPERTIES
+	OUTPUT_NAME gmt
+	PREFIX "${LIB_PREFIX}"
+	IMPORT_PREFIX "${LIB_PREFIX}"
+	VERSION ${GMT_LIB_VERSION}
+	SOVERSION ${GMT_LIB_SOVERSION}
+	LINK_FLAGS "${USER_GMTLIB_LINK_FLAGS}"
+	DEFINE_SYMBOL "LIBRARY_EXPORTS")
+
+# If a renaming of the gmt dll has been set in ConfigUser.cmake
+if (WIN32 AND GMT_DLL_RENAME)
+	set_target_properties (gmtlib PROPERTIES RUNTIME_OUTPUT_NAME ${GMT_DLL_RENAME})
+endif (WIN32 AND GMT_DLL_RENAME)
+
+if (HAVE_DLADDR AND HAVE_LIBDL)
+	# link the dynamic linking loader library
+	target_link_libraries (pslib dl)
+	target_link_libraries (gmtlib dl)
+endif (HAVE_DLADDR AND HAVE_LIBDL)
+
+if (MSVC AND FFTW3_FOUND)
+	target_link_libraries (gmtlib ws2_32)
+endif (MSVC AND FFTW3_FOUND)
+
+# build targets for standalone gmt target and demos
+string (REPLACE ".c" "" _gmt_progs "gmt.c;${GMT_DEMOS_SRCS}")
+foreach (_gmt_prog ${_gmt_progs})
+	add_executable (${_gmt_prog} ${_gmt_prog}.c)
+	target_link_libraries (${_gmt_prog} gmtlib)
+endforeach (_gmt_prog)
+
+add_executable (psldemo psldemo.h psldemo.c)
+target_link_libraries (psldemo pslib)
+
+# Rename gmt target to prevent version clash
+set_target_properties (gmt PROPERTIES OUTPUT_NAME gmt${GMT_INSTALL_NAME_SUFFIX})
+
+# generate and install Mac/Windows debugging symbols
+create_debug_sym (${GMT_BINDIR} gmt)
+if (WIN32)
+	create_debug_sym (${GMT_BINDIR} gmtlib pslib)
+	create_debug_sym (${GMT_BINDIR}/gmt_plugins supplib)
+else (WIN32)
+	create_debug_sym (${GMT_LIBDIR} gmtlib pslib)
+	create_debug_sym (${GMT_LIBDIR}/gmt${GMT_INSTALL_NAME_SUFFIX}/plugins supplib)
+endif (WIN32)
+
+# gshhg_version
+add_executable (gshhg_version gshhg_version.h gshhg_version.c)
+set_target_properties (gshhg_version
+	PROPERTIES COMPILE_DEFINITIONS "STANDALONE")
+target_link_libraries (gshhg_version ${NETCDF_LIBRARIES})
+
+# script2verbatim for removing svn keywords, comments etc. from example scripts
+add_executable (script2verbatim script2verbatim.c)
+
+if (BUILD_SUPPLEMENTS)
+	# Tests depend on GMT progs and supplements:
+	add_dependencies (check ${_gmt_progs} psldemo supplib)
+else (BUILD_SUPPLEMENTS)
+	# Tests depend on GMT progs and supplements:
+	add_dependencies (check ${_gmt_progs} psldemo)
+endif (BUILD_SUPPLEMENTS)
+
+if (MSVC)
+	# Disable automatic manifest generation
+	string(REGEX REPLACE "/MANIFEST[^ ]*( |$)" ""
+		CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS}")
+	set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} /MANIFEST:NO")
+
+	# To expand the command line arguments in Windows, see:
+	# http://msdn.microsoft.com/en-us/library/8bch7bkk.aspx
+	set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} setargv.obj")
+endif (MSVC)
+
+# add the install targets
+install (TARGETS gmtlib pslib gmt
+	ARCHIVE DESTINATION ${GMT_LIBDIR}
+	COMPONENT Runtime
+	LIBRARY DESTINATION ${GMT_LIBDIR}
+	COMPONENT Runtime
+	RUNTIME DESTINATION ${GMT_BINDIR}
+	COMPONENT Runtime)
+
+string (REPLACE ".c" "" _gmt_modules "${GMT_PROGS_SRCS}")
+install_module_symlink (${_gmt_modules} ${GMT_COMPAT_MODULES})
+
+# Install public headers
+install (FILES gmt.h gmt_resources.h declspec.h
+	DESTINATION ${GMT_INCLUDEDIR}
+	COMPONENT Runtime)
+
+if (BUILD_DEVELOPER)
+	# Install Developer headers [These are clean and have no #define HAVE_* configuration]
+	install (FILES postscriptlight.h common_math.h common_string.h gmt_common.h gmt_constants.h gmt_contour.h
+		gmt_dcw.h gmt_decorate.h gmt_defaults.h gmt_error.h gmt_error_codes.h gmt_fft.h gmt_gdalread.h gmt_grd.h
+		gmt_grdio.h gmt_hash.h gmt_io.h gmt_macros.h gmt_memory.h gmt_modern.h gmt_nan.h gmt_notposix.h gmt_plot.h
+		gmt_private.h gmt_project.h gmt_prototypes.h gmt_psl.h gmt_shore.h gmt_symbol.h gmt_synopsis.h
+		gmt_texture.h gmt_time.h gmt_types.h gmt_dev.h gmt_customio.h gmt_hidden.h gmt_mb.h
+		gmt_core_module.h gmt_supplements_module.h compat/qsort.h
+		DESTINATION ${GMT_INCLUDEDIR}
+		COMPONENT Runtime)
+	install (FILES compat/qsort.h
+		DESTINATION ${GMT_INCLUDEDIR}/compat
+		COMPONENT Runtime)
+	# Install Configured Developer headers [These are produced by cmake from *.h.in files]
+	install (FILES ${PROJECT_BINARY_DIR}/src/config.h ${PROJECT_BINARY_DIR}/src/gmt_config.h
+		${PROJECT_BINARY_DIR}/src/gmt_dimensions.h ${PROJECT_BINARY_DIR}/src/gmt_version.h
+		${PROJECT_BINARY_DIR}/src/psl_config.h
+		DESTINATION ${GMT_INCLUDEDIR}
+		COMPONENT Runtime)
+endif (BUILD_DEVELOPER)
+
+# symlink to gmt-wrapper in bindir and libdir:
+if (UNIX AND GMT_INSTALL_NAME_SUFFIX)
+	get_target_property(_gmt_wrapper_name gmt OUTPUT_NAME)
+	install (CODE "
+	execute_process (
+		COMMAND ${CMAKE_COMMAND} -E create_symlink
+		\"${_gmt_wrapper_name}\" \"\$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/${GMT_BINDIR}/gmt\")
+	")
+endif (UNIX AND GMT_INSTALL_NAME_SUFFIX)
+
+# install extra files
+install (PROGRAMS
+	${CMAKE_CURRENT_BINARY_DIR}/isogmt${GMT_INSTALL_NAME_SUFFIX}
+	${CMAKE_CURRENT_BINARY_DIR}/gmt-config${GMT_INSTALL_NAME_SUFFIX}
+	DESTINATION ${GMT_BINDIR}
+	COMPONENT Runtime)
+
+install (PROGRAMS gmtswitch
+	RENAME gmtswitch${GMT_INSTALL_NAME_SUFFIX}
+	DESTINATION ${GMT_BINDIR}
+	COMPONENT Runtime)
+
+install (PROGRAMS gmt_shell_functions.sh
+	RENAME gmt_shell_functions${GMT_INSTALL_NAME_SUFFIX}.sh
+	DESTINATION ${GMT_BINDIR}
+	COMPONENT Runtime)
+
+if (WIN32)
+	install (PROGRAMS
+		gmtswitch.bat
+		DESTINATION ${GMT_BINDIR}
+		COMPONENT Runtime)
+endif (WIN32)
+
+# this prints out the final version of the compiler/linker flags
+string (TOUPPER "${CMAKE_BUILD_TYPE}" CMAKE_BUILD_TYPE_UPPER)
+string(REGEX REPLACE "[ ]+" " " _using_cflags ${CMAKE_C_FLAGS} " "
+	${CMAKE_C_FLAGS_${CMAKE_BUILD_TYPE_UPPER}})
+message (STATUS "Using CFLAGS = '${_using_cflags}'")
Index: /issm/trunk-jpl/externalpackages/gmt/install-6-linux-static.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/gmt/install-6-linux-static.sh	(revision 25784)
+++ /issm/trunk-jpl/externalpackages/gmt/install-6-linux-static.sh	(revision 25785)
@@ -7,4 +7,5 @@
 VER="6.0.0"
 
+CURL_ROOT="${ISSM_DIR}/externalpackages/curl/install"
 PETSC_ROOT="${ISSM_DIR}/externalpackages/petsc/install"
 
@@ -14,20 +15,24 @@
 # Find libgfortran and libgcc so we do not have to hardcode them
 #
-# Should retrieve a copy of gfortran that is compiled from source before returning one that is installed via package manager
+# NOTE: For now, paths are hardcoded.
 #
 # TODO:
-# - Test if -static-libgfortran flag will avoid all of this.
-# - Otherwise, refactor this to work with other gfortran installations.
+# - Figure out how to find and grep for single result like we do with mdfind 
+#	under macOS.
 #
-LIBGFORTRAN=$(mdfind -onlyin /usr -name libgfortran | grep -n libgfortran.a | grep -v i386 | sed "s/[0-9]*://g" | head -1)
+LIBGFORTRAN="/usr/lib/gcc/x86_64-linux-gnu/8/libgfortran.a"
 LIBGFORTRAN_ROOT=${LIBGFORTRAN%/*}
-LIBGCC=$(mdfind -onlyin ${LIBGFORTRAN_ROOT} -name libgcc | grep -n libgcc.a | grep -v i386 | sed "s/[0-9]*://g" | head -1)
+LIBGCC="/usr/lib/gcc/x86_64-linux-gnu/8/libgcc.a"
 
+CURL_INCLUDE_DIRS="${CURL_ROOT}/include" \
+CURL_LIBRARIES="${CURL_ROOT}/lib/libcurl.a;/usr/lib/x86_64-linux-gnu/libssl.a;/usr/lib/x86_64-linux-gnu/libcrypto.a" \
 GDAL_EXTRA_LIBS="-lstdc++" # Determined by running `$GDAL_ROOT/bin/gdal-config --dep-libs` then removing duplicate libs
-NETCDF_EXTRA_LIBS="-lsqlite3 -lpthread -ldl -liconv" # `$NETCDF_ROOT/bin/nc-config --libs` does not report certain dependencies of certain static libraries (see also customized configuration file ./configs/6.0/static/cmake/modules/FindNETCDF.cmake)
+NETCDF_EXTRA_LIBS="-lm -ldl -lz" # `$NETCDF_ROOT/bin/nc-config --libs` does not report certain dependencies of certain static libraries (see also customized configuration file ./configs/6.0/static/cmake/modules/FindNETCDF.cmake)
 
 # Environment
 #
 export CC=mpicc
+export CURL_INCLUDE_DIRS=${CURL_INCLUDE_DIRS}
+export CURL_LIBRARIES=${CURL_LIBRARIES}
 
 # Download source
@@ -47,5 +52,8 @@
 # Copy custom configuration files
 cp ./configs/6/static/cmake/ConfigUser.static.cmake ./src/cmake/ConfigUser.cmake
+cp ./configs/6/static/cmake/modules/FindGDAL.cmake ./src/cmake/modules
 cp ./configs/6/static/cmake/modules/FindGSHHG.cmake ./src/cmake/modules
+cp ./configs/6/static/cmake/modules/FindNETCDF.cmake ./src/cmake/modules
+cp ./configs/6/static/src/CMakeLists.txt ./src/src
 
 # Configure
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.12-linux-static.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.12-linux-static.sh	(revision 25784)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.12-linux-static.sh	(revision 25785)
@@ -29,5 +29,6 @@
 # Configure
 #
-# NOTE: Cannot use --with-fpic option when compiling static libs,
+# NOTE: 
+# - Cannot use --with-fpic option when compiling static libs,
 #
 #		Cannot determine compiler PIC flags if shared libraries is turned off
@@ -52,5 +53,7 @@
 	--download-parmetis=1 \
 	--download-scalapack=1 \
-	--download-mumps=1
+	--download-mumps=1 \
+	--download-zlib=1 \
+	--download-hdf5=1
 
 # Compile and install