Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-acenet.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-acenet.sh (revision 24931) +++ (revision ) @@ -1,33 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.4.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.3.tar.gz' 'petsc-3.4.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.3.tar.gz -mv petsc-3.4.3/* src/ -rm -rf petsc-3.4.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_ARCH="linux-gnu-amd64" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --known-mpi-shared-libraries=1 \ - --with-mpi-dir=$OPENMPI \ - --with-blas-lapack-dir=/usr/local/intel/composer_xe_2011_sp1.13.367/mkl/ \ - --download-scalapack=yes \ - --download-mumps=yes \ - --download-metis=yes \ - --download-parmetis=yes - -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-greenplanet.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-greenplanet.sh (revision 24931) +++ (revision ) @@ -1,55 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.4.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.3.tar.gz' 'petsc-3.4.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.3.tar.gz -mv petsc-3.4.3/* src/ -rm -rf petsc-3.4.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_ARCH="$ISSM_ARCH" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-batch=1 \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --known-mpi-shared-libraries=1 \ - --with-mpi=1 \ - --with-mpi-dir=/sopt/mpi/openmpi-1.5.4_psm/intel/ \ - --with-blas-lapack-dir=/opt/intel/mkl/10.2.4.032/ \ - --download-scalapack=yes \ - --download-blacs=yes \ - --download-mumps=yes \ - --download-metis=yes \ - --download-parmetis=yes \ - --download-trilinos=yes \ - --download-euclid=yes \ - --download-hypre=yes \ - --COPTFLAGS="-lmpi -O3" \ - --FOPTFLAGS="-lmpi -O3" \ - --CXXOPTFLAGS="-lmpi -O3" - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l nodes=1:ppn=1 -#PBS -q c6145 -#PBS -l walltime=10 - -cd $(echo $ISSM_DIR)/externalpackages/petsc/src/ -mpiexec -np 1 ./conftest-arch-linux2-c-opt -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-hpc.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-hpc.sh (revision 24931) +++ (revision ) @@ -1,39 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.4.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.3.tar.gz' 'petsc-3.4.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.3.tar.gz -mv petsc-3.4.3/* src/ -rm -rf petsc-3.4.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --known-mpi-shared-libraries=1 \ - --with-mpi=1 \ - --with-mpi-dir=/data/apps/mpi/openmpi-1.6.0/gcc-4.7.2// \ - --download-scalapack=yes \ - --download-blacs=yes \ - --download-blas=yes \ - --download-f-blas-lapack=yes \ - --download-mumps=yes \ - --download-metis=yes \ - --download-parmetis=yes \ - --COPTFLAGS="-O3" \ - --FOPTFLAGS="-O3" \ - --CXXOPTFLAGS="-O3" - -#Compile petsc and install it -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-linux64.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-linux64.sh (revision 24931) +++ (revision ) @@ -1,36 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.4.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.3.tar.gz' 'petsc-3.4.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.3.tar.gz -mv petsc-3.4.3/* src/ -rm -rf petsc-3.4.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --PETSC_ARCH=linux-gnu-amd64 \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --download-parmetis=yes \ - --download-metis=yes \ - --download-mumps=yes \ - --download-scalapack=yes \ - --download-blacs=yes \ - --download-blas=yes \ - --download-f-blas-lapack=yes \ - --with-pic=1 - -#Compile petsc and install it -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-macosx64.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-macosx64.sh (revision 24931) +++ (revision ) @@ -1,37 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.4.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.3.tar.gz' 'petsc-3.4.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.3.tar.gz -mv petsc-3.4.3/* src/ -rm -rf petsc-3.4.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --PETSC_ARCH="macosx-gnu" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --download-metis=yes \ - --download-parmetis=yes \ - --download-mumps=yes \ - --download-scalapack=yes \ - --download-blacs=yes \ - --download-blas=yes \ - --download-f-blas-lapack=yes \ - --with-debugging=yes - - -#Compile petsc and install it -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades-intel2012.0.032-mpt.2.06rp16.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades-intel2012.0.032-mpt.2.06rp16.sh (revision 24931) +++ (revision ) @@ -1,61 +1,0 @@ -#!/bin/bash - -#Some cleanup -rm -rf install petsc-3.4.2 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.2.tar.gz' 'petsc-3.4.2.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.2.tar.gz -mv petsc-3.4.2/* src/ -rm -rf petsc-3.4.2 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_ARCH="$ISSM_ARCH" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-batch=1 \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --known-mpi-shared-libraries=1 \ - --with-mpi=1 \ - --with-mpi-lib="/nasa/sgi/mpt/2.06rp16/lib/libmpi.so" \ - --with-mpi-include="/nasa/sgi/mpt/2.06rp16/include" \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2012.0.032/composer_xe_2011_sp1/mkl/lib/intel64" \ - --download-scalapack=yes \ - --download-blacs=yes \ - --download-mumps=yes \ - --download-metis=yes \ - --download-parmetis=yes \ - --download-trilinos=yes \ - --download-euclid=yes \ - --download-hypre=yes \ - --COPTFLAGS="-lmpi -O3" \ - --FOPTFLAGS="-lmpi -O3" \ - --CXXOPTFLAGS="-lmpi -O3" - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:model=wes -#PBS -l walltime=200 -#PBS -W group_list=s1010 -#PBS -m e - -. /usr/share/modules/init/bash -module load comp-intel/2012.0.032 -module load mpi-sgi/mpt.2.06rp16 - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q devel script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades-mpich2-gcc444.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades-mpich2-gcc444.sh (revision 24931) +++ (revision ) @@ -1,61 +1,0 @@ -#!/bin/bash - -#Some cleanup -rm -rf install petsc-3.4.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.3.tar.gz' 'petsc-3.4.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.3.tar.gz -mv petsc-3.4.3/* src/ -rm -rf petsc-3.4.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_ARCH="$ISSM_ARCH" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-batch=1 \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --known-mpi-shared-libraries=1 \ - --with-mpi=1 \ - --with-mpi-lib="/nasa/mvapich2/1.4.1/gcc.sles11/lib/libmpich.a"\ - --with-mpi-include="/nasa/mvapich2/1.4.1/gcc.sles11/include"\ - --download-f-blas-lapack=yes \ - --download-scalapack=yes \ - --download-blacs=yes \ - --download-mumps=yes \ - --download-metis=yes \ - --download-parmetis=yes \ - --download-trilinos=yes \ - --download-euclid=yes \ - --download-hypre=yes \ - --COPTFLAGS="-lmpich" \ - --FOPTFLAGS="-lmpich" \ - --CXXOPTFLAGS="-lmpich" - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:model=wes -#PBS -l walltime=200 -#PBS -W group_list=s1010 -#PBS -m e - -. /usr/share/modules/init/bash -module load mpi-mvapich2/1.4.1/gcc -module load gcc/4.4.4 - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q devel script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades-mpich2-gcc470.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades-mpich2-gcc470.sh (revision 24931) +++ (revision ) @@ -1,61 +1,0 @@ -#!/bin/bash - -#Some cleanup -rm -rf install petsc-3.4.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.3.tar.gz' 'petsc-3.4.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.3.tar.gz -mv petsc-3.4.3/* src/ -rm -rf petsc-3.4.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_ARCH="$ISSM_ARCH" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-batch=1 \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --known-mpi-shared-libraries=1 \ - --with-mpi=1 \ - --with-mpi-lib="/nasa/mvapich2/1.6.sles11/gcc/lib/libmpich.a"\ - --with-mpi-include="/nasa/mvapich2/1.6.sles11/gcc/include" \ - --download-f-blas-lapack=yes \ - --download-scalapack=yes \ - --download-blacs=yes \ - --download-mumps=yes \ - --download-metis=yes \ - --download-parmetis=yes \ - --download-trilinos=yes \ - --download-euclid=yes \ - --download-hypre=yes \ - --COPTFLAGS="-lmpich" \ - --FOPTFLAGS="-lmpich" \ - --CXXOPTFLAGS="-lmpich" - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:model=wes -#PBS -l walltime=200 -#PBS -W group_list=s1010 -#PBS -m e - -. /usr/share/modules/init/bash -module load mpi-mvapich2/1.6/gcc -module load gcc/4.7.0 - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q devel script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades-mpich2.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades-mpich2.sh (revision 24931) +++ (revision ) @@ -1,68 +1,0 @@ -#!/bin/bash - -#Some cleanup -rm -rf install petsc-3.4.2 src -mkdir install src - -export cc=gcc -alias cc='gcc' - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.2.tar.gz' 'petsc-3.4.2.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.2.tar.gz -mv petsc-3.4.2/* src/ -rm -rf petsc-3.4.2 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_ARCH="$ISSM_ARCH" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-batch=1 \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --with-mpi=1 \ - --with-mpi-lib="$ISSM_DIR/externalpackages/mpich/install/lib/libmpich.so"\ - --with-mpi-include="$ISSM_DIR/externalpackages/mpich/install/include" \ - --known-mpi-shared-libraries=1 \ - --download-f-blas-lapack=yes \ - --download-scalapack=yes \ - --download-metis=yes \ - --download-parmetis=yes \ - --download-blacs=yes \ - --download-mumps=yes \ - --download-trilinos=yes \ - --download-euclid=yes \ - --download-hypre=yes \ - --COPTFLAGS=" -O3 -march=corei7-avx" \ - --FOPTFLAGS=" -O3 -march=corei7-avx" \ - --CXXOPTFLAGS=" -O3 -march=corei7-avx" - -#--with-mpi-lib="/nasa/mvapich2/1.4.1/gcc.sles11/lib/libmpich.a" \ -# --with-mpi-include="/nasa/mvapich2/1.4.1/gcc.sles11/include" \ - - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:model=wes -#PBS -l walltime=200 -#PBS -W group_list=s1010 -#PBS -m e - -. /usr/share/modules/init/bash -module load mpi-mvapich2/1.6/gcc -module load gcc/4.7.0 - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q devel script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades.sh (revision 24931) +++ (revision ) @@ -1,61 +1,0 @@ -#!/bin/bash - -#Some cleanup -rm -rf install petsc-3.4.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.3.tar.gz' 'petsc-3.4.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.3.tar.gz -mv petsc-3.4.3/* src/ -rm -rf petsc-3.4.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_ARCH="$ISSM_ARCH" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-batch=1 \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --known-mpi-shared-libraries=1 \ - --with-mpi=1 \ - --with-mpi-lib="/nasa/sgi/mpt/2.06rp16/lib/libmpi.so" \ - --with-mpi-include="/nasa/sgi/mpt/2.06rp16/include" \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2013.1.117/composer_xe_2013.1.117/mkl/lib/intel64" \ - --download-scalapack=yes \ - --download-blacs=yes \ - --download-mumps=yes \ - --download-metis=yes \ - --download-parmetis=yes \ - --download-trilinos=yes \ - --download-euclid=yes \ - --download-hypre=yes \ - --COPTFLAGS="-lmpi -O3" \ - --FOPTFLAGS="-lmpi -O3" \ - --CXXOPTFLAGS="-lmpi -O3" - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:model=wes -#PBS -l walltime=200 -#PBS -W group_list=s1010 -#PBS -m e - -. /usr/share/modules/init/bash -module load comp-intel/2013.1.117 -module load mpi-sgi/mpt.2.06rp16 - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q devel script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades2.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.4-pleiades2.sh (revision 24931) +++ (revision ) @@ -1,61 +1,0 @@ -#!/bin/bash - -#Some cleanup -rm -rf install petsc-3.4.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.4.3.tar.gz' 'petsc-3.4.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.4.3.tar.gz -mv petsc-3.4.3/* src/ -rm -rf petsc-3.4.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_ARCH="$ISSM_ARCH" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-batch=1 \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --known-mpi-shared-libraries=1 \ - --with-mpi=1 \ - --with-mpi-lib="/nasa/sgi/mpt/2.06rp16/lib/libmpi.so" \ - --with-mpi-include="/nasa/sgi/mpt/2.06rp16/include" \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2013.1.117/composer_xe_2013.1.117/mkl/lib/intel64" \ - --download-scalapack=yes \ - --download-blacs=yes \ - --download-mumps=yes \ - --download-metis=yes \ - --download-parmetis=yes \ - --download-trilinos=yes \ - --download-euclid=yes \ - --download-hypre=yes \ - --COPTFLAGS="-lmpi -O3" \ - --FOPTFLAGS="-lmpi -O3" \ - --CXXOPTFLAGS="-lmpi -O3" - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:model=wes -#PBS -l walltime=200 -#PBS -W group_list=s1010 -#PBS -m e - -. /usr/share/modules/init/bash -module load comp-intel/2013.1.117 -module load mpi-sgi/mpt.2.06rp16 - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q devel script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-greenplanet.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-greenplanet.sh (revision 24931) +++ (revision ) @@ -1,56 +1,0 @@ -#!/bin/bash -set -eu - -#WARNING: make sure you have the right mpi - -#Some cleanup -rm -rf install petsc-3.5.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.3.tar.gz' 'petsc-3.5.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.3.tar.gz -mv petsc-3.5.3/* src/ -rm -rf petsc-3.5.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-blas-lapack-dir="/sopt/Intel/composer_xe_2015.0.090/mkl/" \ - --with-mpi-dir="/sopt/mpi/openmpi-1.8.3/intel_15.0.0/bin/" \ - --known-mpi-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#!/bin/bash -#SBATCH -p c6145 -#SBATCH -N 1 -n 1 -#SBATCH --mem-per-cpu=1gb -#SBATCH --time=10 -#SBATCH --job-name=test - -module load compiler/intel/15.0.0 -module load mpi/openmpi/1.8.3/intel_15.0.0 - -cd $(echo $ISSM_DIR)/externalpackages/petsc/src/ -mpiexec -np 1 ./conftest-arch-linux2-c-opt -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== sbatch script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-hpc.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-hpc.sh (revision 24931) +++ (revision ) @@ -1,50 +1,0 @@ -#!/bin/bash -set -eu - -#WARNING: make sure you have the right mpi: - -#Some cleanup -rm -rf install petsc-3.5.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.3.tar.gz' 'petsc-3.5.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.3.tar.gz -mv petsc-3.5.3/* src/ -rm -rf petsc-3.5.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-mpi-dir="/data/apps/mpi/openmpi-1.8.3/gcc/4.8.3/" \ - --known-mpi-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-fblaslapack=1 \ - --download-mumps=1 - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#!/bin/bash -#$ -N PETSC -#$ -q free*,pub64 - -cd $(echo $ISSM_DIR)/externalpackages/petsc/src/ -mpiexec -np 1 ./conftest-arch-linux2-c-opt -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-linux64-static.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-linux64-static.sh (revision 24931) +++ (revision ) @@ -1,35 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.5.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.3.tar.gz' 'petsc-3.5.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.3.tar.gz -mv petsc-3.5.3/* src/ -rm -rf petsc-3.5.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-shared-libraries=0 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 \ - --download-fblaslapack=1 - -#Compile and intall -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-linux64.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-linux64.sh (revision 24931) +++ (revision ) @@ -1,36 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.5.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.3.tar.gz' 'petsc-3.5.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.3.tar.gz -mv petsc-3.5.3/* src/ -rm -rf petsc-3.5.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 \ - --download-fblaslapack=1 \ - --with-pic=1 - -#Compile and intall -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-macosx64-static.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-macosx64-static.sh (revision 24931) +++ (revision ) @@ -1,36 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.5.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.3.tar.gz' 'petsc-3.5.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.3.tar.gz -mv petsc-3.5.3/* src/ -rm -rf petsc-3.5.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-ssl=0 \ - --with-x=0 \ - --with-shared-libraries=0 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-fblaslapack=1 \ - --download-scalapack=1 - - -#Compile and intall -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-macosx64.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-macosx64.sh (revision 24931) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.5.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.3.tar.gz' 'petsc-3.5.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.3.tar.gz -mv petsc-3.5.3/* src/ -rm -rf petsc-3.5.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 - -#Compile and intall -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-pleiades-intel2012.0.032-mpt.2.06rp16.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-pleiades-intel2012.0.032-mpt.2.06rp16.sh (revision 24931) +++ (revision ) @@ -1,62 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.5.1 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.1.tar.gz' 'petsc-3.5.1.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.1.tar.gz -mv petsc-3.5.1/* src/ -rm -rf petsc-3.5.1 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_ARCH="$ISSM_ARCH" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-batch=1 \ - --with-debugging=0 \ - --with-shared-libraries=1 \ - --known-mpi-shared-libraries=1 \ - --with-mpi=1 \ - --with-mpi-lib="/nasa/sgi/mpt/2.06rp16/lib/libmpi.so" \ - --with-mpi-include="/nasa/sgi/mpt/2.06rp16/include" \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2012.0.032/composer_xe_2011_sp1/mkl/lib/intel64" \ - --download-scalapack=yes \ - --download-mumps=yes \ - --download-metis=yes \ - --download-parmetis=yes \ - --download-trilinos=yes \ - --download-euclid=yes \ - --download-hypre=yes \ - --COPTFLAGS="-lmpi -O3" \ - --FOPTFLAGS="-lmpi -O3" \ - --CXXOPTFLAGS="-lmpi -O3" - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:model=wes -#PBS -l walltime=200 -#PBS -W group_list=s1010 -#PBS -m e - -. /usr/share/modules/init/bash -module load comp-intel/2012.0.032 -module load math/intel_mkl_64_10.0.011 -module load mpi-sgi/mpt.2.06rp16 - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q devel script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-pleiades.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-pleiades.sh (revision 24931) +++ (revision ) @@ -1,57 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.5.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.3.tar.gz' 'petsc-3.5.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.3.tar.gz -mv petsc-3.5.3/* src/ -rm -rf petsc-3.5.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2015.0.090/composer_xe_2015.0.090/mkl/" \ - --with-mpi-lib="/nasa/sgi/mpt/2.11r13/lib/libmpi.so" \ - --with-mpi-include="/nasa/sgi/mpt/2.11r13/include" \ - --known-mpi-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 \ - --download-fblaslapack=1 - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:model=wes -#PBS -l walltime=200 -#PBS -W group_list=s1010 -#PBS -m e - -. /usr/share/modules/init/bash -module load comp-intel/2015.0.090 -module load mpi-sgi/mpt.2.11r13 - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpiexec -np 1 ./conftest-arch-linux2-c-opt -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q devel script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-win-par.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-win-par.sh (revision 24931) +++ (revision ) @@ -1,40 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.5.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.3.tar.gz' 'petsc-3.5.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.3.tar.gz -mv petsc-3.5.3/* src/ -rm -rf petsc-3.5.3 - -export PETSC_DIR=`cygpath -u "$ISSM_DIR/externalpackages/petsc/src"` -export PREFIX_DIR=`cygpath -u "$ISSM_DIR/externalpackages/petsc/install"` - -#configure -cd src -./config/configure.py \ - --prefix=$PREFIX_DIR \ - --PETSC_ARCH=cygwin-intel \ - --PETSC_DIR=$PETSC_DIR \ - --with-mpi-dir="/cygdrive/c/Program\ Files/MPICH2/"\ - --with-debugging=1 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-f2cblaslapack=yes \ - --with-cc='win32fe cl' \ - --with-fc=0 \ - --with-cxx='win32fe cl' \ - --with-clanguage=cxx - -#Compile petsc and install it -make -make install - -patch ../install/include/petscfix.h ../configs/3.1/win7/petscfix.h.patch Index: sm/trunk-jpl/externalpackages/petsc/install-3.5-win7.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.5-win7.sh (revision 24931) +++ (revision ) @@ -1,41 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.5.3 src -mkdir install src - -#Download from ISSM server -#$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.5.3.tar.gz' 'petsc-3.5.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.5.3.tar.gz -mv petsc-3.5.3/* src/ -rm -rf petsc-3.5.3 - -export PETSC_DIR=`cygpath -u "$ISSM_DIR/externalpackages/petsc/src"` -export PREFIX_DIR=`cygpath -u "$ISSM_DIR/externalpackages/petsc/install"` - -#configure -cd src -./config/configure.py \ - --with-parallel-no \ - --prefix=$PREFIX_DIR \ - --PETSC_ARCH=cygwin-intel \ - --PETSC_DIR=$PETSC_DIR \ - --with-mpi=0 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-f2cblaslapack=yes \ - --with-cc='win32fe cl' \ - --with-fc=0 \ - --with-cxx='win32fe cl' \ - --with-clanguage=cxx - -#Compile petsc and install it -make -make install - -patch ../install/include/petscfix.h ../configs/3.1/win7/petscfix.h.patch Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-aurora.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-aurora.sh (revision 24931) +++ (revision ) @@ -1,58 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.3.tar.gz -mv petsc-3.6.3/* src/ -rm -rf petsc-3.6.3 - -#--with-cc=icc --with-cxx=icpc --with-fc=ifort --with-f77=ifort \ - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-blas-lapack-dir="/opt/intel/composer_xe_2013.5.192/mkl/lib/intel64/" \ - --with-mpi-dir="/opt/intel/impi/4.1.3/intel64/" \ - --known-mpi-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:mpiprocs=1 -#PBS -l walltime=1:00:00 -#PBS -m e - -export RUN_DIR=$ISSM_DIR/externalpackages/petsc/src/ - -source /usr/share/Modules/init/bash -module load intel/cluster-toolkit-2013.5.192 - -export PATH="$PATH:.:/opt/intel/impi/4.1.3/intel64/bin/" -export MPI_GROUP_MAX=64 -cd $RUN_DIR -mpirun -np 1 ./conftest-arch-linux2-c-opt -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q debugq script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-discover.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-discover.sh (revision 24931) +++ (revision ) @@ -1,63 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.3.tar.gz -mv petsc-3.6.3/* src/ -rm -rf petsc-3.6.3 - -#--with-cc=icc --with-cxx=icpc --with-fc=ifort --with-f77=ifort \ - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-blas-lapack-dir="/usr/local/intel/2016/compilers_and_libraries_2016.2.181/linux/mkl/" \ - --with-mpi-lib="/usr/local/intel/2016/impi/5.1.3.181/lib64/libmpi.so" \ - --with-mpi-include="/usr/local/intel/2016/impi/5.1.3.181/include64/" \ - --known-mpi-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#!/bin/bash -#SBATCH -J petscinstall # Job Name -#SBATCH -N 1 -#SBATCH -n 1 -#SBATCH -A s1690 -#SBATCH -t 00:01:00 # Run time (hh:mm:ss) - 1.5 hours -#SBATCH --qos=debug -#SBATCH -o petscinstall.outlog -#SBATCH -e petscinstall.errlog - -. /usr/share/modules/init/bash -module load comp/intel-16.0.2.181 -module load mpi/impi-5.1.3.181 -module load other/cmake-3.8.2 - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpirun -np 1 ./conftest-arch-linux2-c-opt -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== sbatch script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-linux64-static.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-linux64-static.sh (revision 24931) +++ (revision ) @@ -1,40 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.3.tar.gz -mv petsc-3.6.3/* src/ -rm -rf petsc-3.6.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-shared-libraries=0 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-fblaslapack=1 \ - --download-scalapack=1 \ - --CFLAGS="-fPIC" \ - --CC_LINKER_FLAGS="-fPIC" \ - --CXXFLAGS="-fPIC" \ - --FFLAGS="-fPIC" \ - --FC_LINKER_FLAGS="-fPIC" - -#Compile and intall -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-linux64.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-linux64.sh (revision 24931) +++ (revision ) @@ -1,36 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.3.tar.gz -mv petsc-3.6.3/* src/ -rm -rf petsc-3.6.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 \ - --download-fblaslapack=1 \ - --with-pic=1 - -#Compile and intall -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-lonestar.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-lonestar.sh (revision 24931) +++ (revision ) @@ -1,51 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.3.tar.gz -mv petsc-3.6.3/* src/ -rm -rf petsc-3.6.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-blas-lapack-dir="$TACC_MKL_LIB" \ - --with-mpi-lib="/opt/cray/pe/mpt/7.7.3/gni/mpich-intel/16.0/lib/libmpich.so" \ - --with-mpi-include="/opt/cray/pe/mpt/7.7.3/gni/mpich-intel/16.0/include" \ - --known-mpi-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#!/bin/bash -#SBATCH -J petscinstall # Job Name -#SBATCH -n 24 # Requests 12 tasks/node, 12 cores total -#SBATCH -N 1 # Requests 12 tasks/node, 12 cores total -#SBATCH -p normal # Queue name normal -#SBATCH -t 00:01:00 # Run time (hh:mm:ss) - 1.5 hours - -ibrun -np 1 ./conftest-arch-linux2-c-opt -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== sbatch script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-macosx64-static.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-macosx64-static.sh (revision 24931) +++ (revision ) @@ -1,35 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.3.tar.gz -mv petsc-3.6.3/* src/ -rm -rf petsc-3.6.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-shared-libraries=0 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-fblaslapack=1 \ - --download-scalapack=1 - -#Compile and intall -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-macosx64.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-macosx64.sh (revision 24931) +++ (revision ) @@ -1,38 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.3.tar.gz -mv petsc-3.6.3/* src/ -rm -rf petsc-3.6.3 - -#patch -cat src/config/BuildSystem/config/packages/metis.py | sed -e "s/metis-5.1.0-p1/metis-5.1.0-p3/g" > TEMP -mv TEMP src/config/BuildSystem/config/packages/metis.py - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 - -#Compile and intall -make -make install Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-pleiades.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-pleiades.sh (revision 24931) +++ (revision ) @@ -1,55 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.3.tar.gz -mv petsc-3.6.3/* src/ -rm -rf petsc-3.6.3 - -#configure -cd src -./config/configure.py \ - --prefix="$ISSM_DIR/externalpackages/petsc/install" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \ - --with-cc=icc --with-cxx=icpc --with-fc=ifort --with-f77=ifort \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2016.2.181/compilers_and_libraries_2016.2.181/linux/mkl/" \ - --known-mpi-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=1 - -#prepare script to reconfigure petsc -cat > script.queue << EOF -#PBS -S /bin/bash -#PBS -l select=1:ncpus=1:model=wes -#PBS -l walltime=200 -#PBS -W group_list=s1010 -#PBS -m e - -. /usr/share/modules/init/bash -module load comp-intel/2016.2.181 -module load mpi-sgi/mpt - -export PATH="$PATH:." -export MPI_GROUP_MAX=64 -mpiexec -np 1 ./conftest-arch-linux2-c-opt -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== qsub -q devel script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-simba-intel-mvapich2-2.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-simba-intel-mvapich2-2.sh (revision 24931) +++ (revision ) @@ -1,69 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.3 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.3.tar.gz -mv petsc-3.6.3/* src/ -rm -rf petsc-3.6.3 - -# configure -cd src -./configure --prefix="$ISSM_DIR/externalpackages/petsc/install-$VER-intel-mvapich2-2" \ - --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src-$VER-intel-mvapich2-2"\ - --with-mpi-dir="/usr/local/mpi/intel18/mvapich2-2.2/" \ - --known-mpi-shared-libraries \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-shared-libraries=1 \ - --with-batch=1 \ - --download-mumps=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-fblaslapack=1 \ - --download-scalapack=1 - -#prepare script to reconfigure petsc -cd $ISSM_DIR/externalpackages/petsc/src - -PBS_O_WORKDIR=$PWD - -cat > script.pbs << EOF -#PBS -S /bin/bash -#PBS -q batch -#PBS -l nodes=1:ppn=1 - -# Set qsub location -PBS_O_WORKDIR=$PWD -cd $PBS_O_WORKDIR - -# set mpi module -module load intel18/compiler-18 -module load intel18/mvapich2-2.2 -module rm intel18/openmpi-2.0.2 -module rm intel18/impi-18 - -echo "check module" -module list - -mpirun -machinefile $PBS_O_WORKDIR/mpi.host -np 1 $PBS_O_WORKDIR/conftest-arch-linux2-c-opt -EOF - -# generate mpi.host file -cat > mpi.host < script.queue << EOF -#!/bin/bash -#SBATCH -J petscinstall # Job Name -#SBATCH -N 1 -#SBATCH -n 1 -#SBATCH -t 00:01:00 # Run time (hh:mm:ss) - 1.5 hours -#SBATCH --qos=devel -#SBATCH -o petscinstall.outlog -#SBATCH -e petscinstall.errlog - -module purge -module load CMake/3.3.2-GNU-4.9.3-2.25 -module load Automake/1.15-GNU-4.9.3-2.25 -module load libtool/2.4.6-GNU-4.9.3-2.25 -module load intel/2015b - -mpirun -np 1 ./conftest-arch-linux2-c-opt -EOF - -#print instructions -echo "== Now: cd src/ " -echo "== sbatch script.queue " -echo "== Then run reconfigure script generated by PETSc and follow instructions" Index: sm/trunk-jpl/externalpackages/petsc/install-3.6-win10.sh =================================================================== --- /issm/trunk-jpl/externalpackages/petsc/install-3.6-win10.sh (revision 24931) +++ (revision ) @@ -1,41 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install petsc-3.6.2 src -mkdir install src - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.2.tar.gz' 'petsc-3.6.2.tar.gz' - -#Untar and move petsc to install directory -tar -zxvf petsc-3.6.2.tar.gz -mv petsc-3.6.2/* src/ -rm -rf petsc-3.6.2 - -export PETSC_DIR=`cygpath -u "$ISSM_DIR/externalpackages/petsc/src"` -export PREFIX_DIR=`cygpath -u "$ISSM_DIR/externalpackages/petsc/install"` - -#configure -cd src -./config/configure.py \ - --with-parallel-no \ - --prefix=$PREFIX_DIR \ - --PETSC_ARCH=cygwin-intel \ - --PETSC_DIR=$PETSC_DIR \ - --with-mpi=0 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-f2cblaslapack=yes \ - --with-cc='win32fe cl' \ - --with-fc=0 \ - --with-cxx='win32fe cl' \ - --with-clanguage=cxx - -#Compile petsc and install it -make -make install - -patch ../install/include/petscfix.h ../configs/3.1/win7/petscfix.h.patch