Index: sm/trunk-jpl/externalpackages/dakota/install-6.2-aurora.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-6.2-aurora.sh	(revision 24812)
+++ 	(revision )
@@ -1,58 +1,0 @@
-#!/bin/bash
-set -eu
-
-#Some cleanup
-rm -rf Dakota
-rm -rf src 
-rm -rf build 
-rm -rf install 
-mkdir src build install 
-
-#Download from ISSM server
-$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-6.2-public.src.tar.gz' 'dakota-6.2-public-src.tar.gz'
-
-#Untar 
-tar -zxvf dakota-6.2-public-src.tar.gz
-
-#Move Dakota to src directory
-mv dakota-6.2.0.src/* src
-rm -rf dakota-6.2.0.src
-
-#Set up Dakota cmake variables and config
-export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src
-export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build
-export MPIHOME=$ISSM_DIR/externalpackages/mpich/install
-cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake
-patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/6.2/BuildDakotaCustom.cmake.aurora.patch
-patch $DAK_SRC/cmake/DakotaDev.cmake configs/6.2/DakotaDev.cmake.patch
-patch $DAK_SRC/CMakeLists.txt configs/6.2/CMakeLists.txt.aurora.patch
-
-#Apply patches
-patch src/src/NonDSampling.cpp configs/6.2/NonDSampling.cpp.patch
-patch src/src/NonDLocalReliability.cpp configs/6.2/NonDLocalReliability.cpp.patch
-patch src/packages/pecos/src/pecos_global_defs.hpp configs/6.2/pecos_global_defs.hpp.patch
-
-#Configure dakota
-cd $DAK_BUILD
-
-cmake -D CMAKE_C_COMPILER=/opt/intel/impi/4.1.3/intel64/bin/mpicc \
-	   -D CMAKE_CXX_COMPILER=/opt/intel/impi/4.1.3/intel64/bin/mpicxx \
-	   -D CMAKE_Fortran_COMPILER=/usr/bin/gfortran \
-		-DHAVE_ACRO=off \
-		-DHAVE_JEGA=off \
-		-C $DAK_SRC/cmake/BuildDakotaCustom.cmake \
-		-C $DAK_SRC/cmake/DakotaDev.cmake \
-		$DAK_SRC
-cd ..
-
-#Compile and install dakota
-cd $DAK_BUILD
-if [ $# -eq 0 ];
-then
-	make
-	make install
-else
-	make -j $1
-	make -j $1 install
-fi
-cd ..
Index: sm/trunk-jpl/externalpackages/dakota/install-6.2-macosx64-static.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-6.2-macosx64-static.sh	(revision 24812)
+++ 	(revision )
@@ -1,80 +1,0 @@
-#!/bin/bash
-set -eu
-
-# Constants
-DAK_VER="6.2"
-
-# Some cleanup
-rm -rf build
-rm -rf install
-rm -rf tests
-rm -rf src
-mkdir build install src
-
-# Download from ISSM server
-$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${DAK_VER}-public.src.tar.gz" "dakota-${DAK_VER}-public-src.tar.gz"
-
-# Untar
-tar -zxvf dakota-${DAK_VER}-public-src.tar.gz
-
-# Move Dakota to src directory
-mv dakota-${DAK_VER}.0.src/* src
-rm -rf dakota-${DAK_VER}.0.src
-
-# Set up Dakota and CMake variables
-DAK_PATH=$ISSM_DIR/externalpackages/dakota
-
-export DAK_BUILD=$DAK_PATH/build
-export DAK_INSTALL=$DAK_PATH/install
-export DAK_SRC=$DAK_PATH/src
-export MPIHOME=$ISSM_DIR/externalpackages/mpich/install
-
-
-# Apply patches
-cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake
-patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/$DAK_VER/BuildDakotaCustom.cmake.mac.patch
-patch $DAK_SRC/cmake/DakotaDev.cmake configs/$DAK_VER/DakotaDev.cmake.patch
-patch $DAK_SRC/cmake/InstallDarwinDylibs.cmake configs/$DAK_VER/InstallDarwinDylibs.cmake.patch
-patch $DAK_SRC/CMakeLists.txt configs/$DAK_VER/CMakeLists.txt.patch
-patch src/src/NonDSampling.cpp configs/$DAK_VER/NonDSampling.cpp.patch
-patch src/src/NonDLocalReliability.cpp configs/$DAK_VER/NonDLocalReliability.cpp.patch
-patch src/packages/pecos/src/pecos_global_defs.hpp configs/$DAK_VER/pecos_global_defs.hpp.patch
-
-# Configure and build Dakota
-cd $DAK_BUILD
-cmake \
-	-C$DAK_SRC/cmake/BuildDakotaCustom.cmake \
-	-C$DAK_SRC/cmake/DakotaDev.cmake \
-	-DBUILD_STATIC_LIBS=ON \
-	-DBUILD_SHARED_LIBS=OFF \
-	-DBOOST_ROOT=$BOOST_ROOT \
-	-DBoost_LIBRARY_DIRS=$BOOST_ROOT/lib \
-	-DBoost_NO_BOOST_CMAKE=TRUE \
-	-DBoost_NO_SYSTEM_PATHS=TRUE \
-	-DCMAKE_INSTALL_PREFIX=$DAK_INSTALL \
-	-DCMAKE_C_COMPILER=$ISSM_DIR/externalpackages/mpich/install/bin/mpicc \
-	-DCMAKE_CXX_COMPILER=$ISSM_DIR/externalpackages/mpich/install/bin/mpicxx \
-	-DCMAKE_Fortran_COMPILER=$ISSM_DIR/externalpackages/mpich/install/bin/mpif77 \
-	-DCMAKE_CXX_FLAGS=-fdelayed-template-parsing \
-	-DHAVE_ACRO=off \
-	-DHAVE_JEGA=off \
-	$DAK_SRC
-
-if [ $# -eq 0 ];
-then
-	make
-	make install
-else
-	make -j $1
-	make -j $1 install
-fi
-
-# Set paths and library paths
-export PATH=$DAK_INSTALL/bin:$DAK_INSTALL/test:$PATH
-
-if [ -z ${DYLD_LIBRARY_PATH+x} ]
-then
-	export DYLD_LIBRARY_PATH=$DAK_INSTALL/lib:$DAK_INSTALL/bin
-else
-	export DYLD_LIBRARY_PATH=$DAK_INSTALL/lib:$DAK_INSTALL/bin:$DYLD_LIBRARY_PATH
-fi
Index: sm/trunk-jpl/externalpackages/gsl/install-1.15-linux.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/gsl/install-1.15-linux.sh	(revision 24812)
+++ 	(revision )
@@ -1,36 +1,0 @@
-#!/bin/bash
-set -eu
-
-
-# Constants
-#
-GSL_ROOT=${ISSM_DIR}/externalpackages/gsl
-VER="1.15"
-
-# Cleanup=
-rm -rf install src
-mkdir install src
-
-# Download source
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/gsl-${VER}.tar.gz" "gsl-${VER}.tar.gz"
-
-# Unpack source
-tar -zxvf gsl-${VER}.tar.gz
-
-# Move source to 'src' directory
-mv gsl-${VER}/* src
-rm -rf gsl-${VER}
-
-# Configure
-cd src
-./configure \
-	--prefix="${GSL_ROOT}/install"
-
-# Compile and install
-if [ $# -eq 0 ]; then
-	make
-	make install
-else
-	make -j $1
-	make -j $1 install
-fi
Index: sm/trunk-jpl/externalpackages/gsl/install-linux64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/gsl/install-linux64.sh	(revision 24812)
+++ 	(revision )
@@ -1,30 +1,0 @@
-#!/bin/bash
-set -eu
-
-#Some cleanup
-rm -rf src install gsl-1.15
-mkdir src install
-
-#Download from ISSM server
-$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/gsl-1.15.tar.gz' 'gsl-1.15.tar.gz'
-
-#Untar 
-tar -zxvf  gsl-1.15.tar.gz
-
-#Move gsl into src directory
-mv gsl-1.15/* src
-rm -rf gsl-1.15
-
-#Configure gsl
-cd src
-
-./configure \
-	--prefix="$ISSM_DIR/externalpackages/gsl/install" 
-
-#Compile gsl
-if [ $# -eq 0 ]; then
-	make
-else
-	make -j $1
-fi
-make install