Index: /issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.libvars.patch
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.libvars.patch	(revision 24520)
+++ /issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.libvars.patch	(revision 24520)
@@ -0,0 +1,6 @@
+156c153,155
+< # TODO: Can't this be integrated into the following logic?
+---
+> # TODO: Can't this be integrated into the following logic?
+> set(BLAS_LIBS $ENV{BLAS_LIBS})
+> set(LAPACK_LIBS $ENV{LAPACK_LIBS})
Index: /issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.petsclibs.patch
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.petsclibs.patch	(revision 24519)
+++ /issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.petsclibs.patch	(revision 24520)
@@ -3,4 +3,4 @@
 ---
 > # TODO: Can't this be integrated into the following logic?
-> set(BLAS_LIBS $ENV{BLAS_LIBS})
-> set(LAPACK_LIBS $ENV{LAPACK_LIBS})
+> set(BLAS_LIBS "-L$ENV{ISSM_DIR}/externalpackages/petsc/install/lib -lfblas -L/usr/lib/gcc/x86_64-linux-gnu/4.9 -lgfortran")
+> set(LAPACK_LIBS "-L$ENV{ISSM_DIR}/externalpackages/petsc/install/lib -lflapack -L/usr/lib/gcc/x86_64-linux-gnu/4.9 -lgfortran")
Index: /issm/trunk-jpl/externalpackages/dakota/install-6.2-linux64-petsclibs.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-6.2-linux64-petsclibs.sh	(revision 24520)
+++ /issm/trunk-jpl/externalpackages/dakota/install-6.2-linux64-petsclibs.sh	(revision 24520)
@@ -0,0 +1,61 @@
+#!/bin/bash
+set -eu
+
+#Some cleanup
+rm -rf Dakota
+rm -rf src 
+rm -rf build 
+rm -rf install 
+mkdir src build install 
+
+#Download from ISSM server
+$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-6.2-public.src.tar.gz' 'dakota-6.2-public-src.tar.gz'
+
+#Untar 
+tar -zxvf dakota-6.2-public-src.tar.gz
+
+#Move Dakota to src directory
+mv dakota-6.2.0.src/* src
+rm -rf dakota-6.2.0.src
+
+#Set up Dakota cmake variables and config
+export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src
+export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build
+export MPIHOME=$ISSM_DIR/externalpackages/mpich/install
+cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake
+patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/6.2/BuildDakotaCustom.cmake.patch
+patch $DAK_SRC/cmake/DakotaDev.cmake configs/6.2/DakotaDev.cmake.patch
+patch $DAK_SRC/CMakeLists.txt configs/6.2/CMakeLists.txt.petsclibs.patch
+
+#Apply patches
+patch src/src/NonDSampling.cpp configs/6.2/NonDSampling.cpp.patch
+patch src/src/NonDLocalReliability.cpp configs/6.2/NonDLocalReliability.cpp.patch
+patch src/packages/pecos/src/pecos_global_defs.hpp configs/6.2/pecos_global_defs.hpp.patch
+
+#Setting CXXFLAGS to deal with C++11 incompatibility with Matlab's Boost
+export CXXFLAGS='-std=c++98'
+
+#Configure dakota
+cd $DAK_BUILD
+
+cmake -D CMAKE_C_COMPILER=$ISSM_DIR/externalpackages/mpich/install/bin/mpicc \
+	   -D CMAKE_CXX_COMPILER=$ISSM_DIR/externalpackages/mpich/install/bin/mpicxx \
+	   -D CMAKE_Fortran_COMPILER=$ISSM_DIR/externalpackages/mpich/install/bin/mpif77 \
+		-DHAVE_ACRO=off \
+		-DHAVE_JEGA=off \
+		-C $DAK_SRC/cmake/BuildDakotaCustom.cmake \
+		-C $DAK_SRC/cmake/DakotaDev.cmake \
+		$DAK_SRC
+cd ..
+
+#Compile and install dakota
+cd $DAK_BUILD
+if [ $# -eq 0 ];
+then
+	make
+	make install
+else
+	make -j $1
+	make -j $1 install
+fi
+cd ..
Index: /issm/trunk-jpl/externalpackages/dakota/install-6.2-linux64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-6.2-linux64.sh	(revision 24519)
+++ /issm/trunk-jpl/externalpackages/dakota/install-6.2-linux64.sh	(revision 24520)
@@ -28,5 +28,5 @@
 patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/6.2/BuildDakotaCustom.cmake.patch
 patch $DAK_SRC/cmake/DakotaDev.cmake configs/6.2/DakotaDev.cmake.patch
-patch $DAK_SRC/CMakeLists.txt configs/6.2/CMakeLists.txt.petsclibs.patch
+patch $DAK_SRC/CMakeLists.txt configs/6.2/CMakeLists.txt.libvars.patch
 
 #Apply patches