Index: /issm/trunk-jpl/externalpackages/petsc/install-3.9-aurora.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.9-aurora.sh	(revision 23622)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.9-aurora.sh	(revision 23622)
@@ -0,0 +1,58 @@
+#!/bin/bash
+set -eu
+
+#Some cleanup
+#rm -rf install petsc-3.9.3 src
+#mkdir install src
+#
+##Download from ISSM server
+#$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.9.3.tar.gz' 'petsc-3.9.3.tar.gz'
+#
+##Untar and move petsc to install directory
+#tar -zxvf  petsc-3.9.3.tar.gz
+#mv petsc-3.9.3/* src/
+#rm -rf petsc-3.9.3
+
+#configure
+cd src
+./config/configure.py \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
+	--with-blas-lapack-dir="/opt/intel/composer_xe_2013.5.192/mkl/lib/intel64/" \
+	--with-mpi-dir="/opt/intel/impi/4.1.3/intel64/" \
+	--known-mpi-shared-libraries=1 \
+	--with-debugging=0 \
+	--with-valgrind=0 \
+	--with-x=0 \
+	--with-ssl=0 \
+	--with-batch=1  \
+	--with-shared-libraries=1 \
+	--download-metis=1 \
+	--download-parmetis=1 \
+	--download-mumps=1 \
+	--download-scalapack=1 \
+	--known-64-bit-blas-indices \
+	--COPTFLAGS="-O3" \
+	--FOPTFLAGS="-O3" \
+	--CXXOPTFLAGS="-O3"
+
+#prepare script to reconfigure petsc
+cat > script.queue << EOF
+#PBS -S /bin/bash
+#PBS -l select=1:ncpus=1:mpiprocs=1 
+#PBS -l walltime=0:00:59
+#PBS -m e
+
+source /usr/share/Modules/init/bash
+module load intel/cluster-toolkit-2013.5.192
+
+export PATH="$PATH:.:/opt/intel/impi/4.1.3/intel64/bin/"
+export MPI_GROUP_MAX=64
+cd $ISSM_DIR/externalpackages/petsc/src/
+mpirun -np 1 ./conftest-arch-linux2-c-opt
+EOF
+
+#print instructions
+echo "== Now: cd src/ "
+echo "== qsub -q debugq script.queue "
+echo "== Then run reconfigure script generated by PETSc and follow instructions"