Index: /issm/trunk-jpl/externalpackages/autotools/install-win.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/autotools/install-win.sh	(revision 23414)
+++ /issm/trunk-jpl/externalpackages/autotools/install-win.sh	(revision 23415)
@@ -2,6 +2,77 @@
 set -eu
 
-#Do a regular install first, and patch after
-./install.sh
+AUTOCONF_VER="2.69"
+AUTOMAKE_MIN_VER="1.16"
+AUTOMAKE_BUILD_VER="${AUTOMAKE_MIN_VER}.1"
+LIBTOOL_VER="2.4.2"
+M4_VER="1.4.17"
+
+AUTOCONF="autoconf-${AUTOCONF_VER}"
+AUTOMAKE="automake-${AUTOMAKE_BUILD_VER}"
+LIBTOOL="libtool-${LIBTOOL_VER}"
+M4="m4-${M4_VER}"
+
+AUTOCONF_TARBALL="${AUTOCONF}.tar.gz"
+AUTOMAKE_TARBALL="${AUTOMAKE}.tar.gz"
+LIBTOOL_TARBALL="${LIBTOOL}.tar.gz"
+M4_TARBALL="${M4}.tar.gz"
+
+# Clean up existing assets
+rm -rf install src
+
+# Set up for installation
+mkdir install
+export PATH="$ISSM_DIR/externalpackages/autotools/install/bin:$PATH"
+
+# Install m4
+echo " === INSTALLING M4 =="
+$ISSM_DIR/scripts/DownloadExternalPackage.py "http://issm.jpl.nasa.gov/files/externalpackages/${M4_TARBALL}" $M4_TARBALL
+tar -zxvf $M4_TARBALL
+rm -f $M4_TARBALL
+mv $M4 src
+cd src
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install"
+make
+make install
+cd ..
+
+# Install autoconf
+echo " === INSTALLING AUTOCONF =="
+rm -rf src
+$ISSM_DIR/scripts/DownloadExternalPackage.py "http://issm.jpl.nasa.gov/files/externalpackages/${AUTOCONF_TARBALL}" $AUTOCONF_TARBALL
+tar -zxvf $AUTOCONF_TARBALL
+rm -f $AUTOCONF_TARBALL
+mv $AUTOCONF src
+cd src
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install"
+make
+make install
+cd ..
+
+# Install automake
+echo " === INSTALLING AUTOMAKE =="
+rm -rf src
+$ISSM_DIR/scripts/DownloadExternalPackage.py "http://issm.jpl.nasa.gov/files/externalpackages/${AUTOMAKE_TARBALL}" $AUTOMAKE_TARBALL
+tar -zxvf $AUTOMAKE_TARBALL
+rm -f $AUTOMAKE_TARBALL
+mv $AUTOMAKE src
+cd src
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install"
+make
+make install
+cd ..
+
+# Install libtool
+echo " === INSTALLING LIBTOOL =="
+rm -rf src
+$ISSM_DIR/scripts/DownloadExternalPackage.py "http://issm.jpl.nasa.gov/files/externalpackages/${LIBTOOL_TARBALL}" $LIBTOOL_TARBALL
+tar -zxvf $LIBTOOL_TARBALL
+rm -f $LIBTOOL_TARBALL
+mv $LIBTOOL src
+cd src
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install"
+make
+make install
+cd ..
 
 # This patch takes care of removing options passed to the linker that causes