Changeset 22781

Timestamp:

05/15/18 13:55:45 (7 years ago)

Author:

Mathieu Morlighem

Message:

CHG: gmt might not be installed in externalpackages

Location:

issm/trunk/src/m/coordsystems

Files:

• gmtmask.m (modified) (1 diff)
• gmtmaskparallel.m (modified) (1 diff)

issm/trunk/src/m/coordsystems/gmtmask.m

@@ -41 +41 @@
         end
 
+   %Find path to gmt
+   paths = {[issmdir() '/bin/gmt'],[issmdir() '/externalpackages/gmt/install/bin/gmt'],'/Applications/GMT-5.4.3.app/Contents/Resources/bin/gmt'};
+   gmtpath = '';
+   for i=paths
+      if exist(i{1},'file'),
+         gmtpath = i{1};
+      end
+   end
+   if isempty(gmtpath),
+      error('gmt not found, make sure it is properly installed');
+   end
+   
         %figure out which vertices are on the ocean, which one on the continent:
-        [status,result] = system(['gmt gmtselect ./' filename_all ' -h0 -Df -R0/360/-90/90  -A0 -JQ180/200 -Nk/s/s/k/s > ./' filename_oce]);
+        [status,result] = system([gmtpath ' gmtselect ./' filename_all ' -h0 -Df -R0/360/-90/90  -A0 -JQ180/200 -Nk/s/s/k/s > ./' filename_oce]);
         if status~=0,
                 error(result);

issm/trunk/src/m/coordsystems/gmtmaskparallel.m

@@ -23 +23 @@
         end
 
+   %Find path to gmt
+   paths = {[issmdir() '/bin/gmt'],[issmdir() '/externalpackages/gmt/install/bin/gmt'],'/Applications/GMT-5.4.3.app/Contents/Resources/bin/gmt'};
+   gmtpath = '';
+   for i=paths
+      if exist(i{1},'file'),
+         gmtpath = i{1};
+      end
+   end
+   if isempty(gmtpath),
+      error('gmt not found, make sure it is properly installed');
+   end
+
         %Build xjobs script:
         fid=fopen('xjobs.script','w');
         for i=1:length(nnv)-1,
-                fprintf(fid,'gmt gmtselect ./all_vertices%i.txt -h0 -Df -R0/360/-90/90  -A0 -JQ180/200 -Nk/s/s/k/s > ./oce_vertices%i.txt\n',i,i);
+                fprintf(fid,'%s gmtselect ./all_vertices%i.txt -h0 -Df -R0/360/-90/90  -A0 -JQ180/200 -Nk/s/s/k/s > ./oce_vertices%i.txt\n',gmtpath,i,i);
         end
         fclose(fid);