Index: /issm/trunk-jpl/src/m/classes/clusters/aci.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/aci.m	(revision 21818)
+++ /issm/trunk-jpl/src/m/classes/clusters/aci.m	(revision 21818)
@@ -0,0 +1,117 @@
+%ACI class definition
+%
+%   Usage:
+%      cluster=aci();
+%      cluster=aci('np',3);
+%      cluster=aci('np',3,'login','username');
+
+classdef aci
+	properties (SetAccess=public)  
+		% {{{
+		name='';
+		login='';
+		nodes=0;
+		ppn=0;
+		time=0;
+		port=0;
+		queue='';
+		codepath='';
+		executionpath='';
+		modules={};
+	end
+	%}}}
+	methods
+		function cluster=aci(varargin) % {{{
+
+			%initialize cluster using default settings if provided
+			if (exist('aci_settings')==2), aci_settings; end
+
+			%use provided options to change fields
+			cluster=AssignObjectFields(pairoptions(varargin{:}),cluster);
+		end
+		%}}}
+		function disp(cluster) % {{{
+			%  display the object
+			disp(sprintf('class ''%s'' object ''%s'' = ',class(cluster),inputname(1)));
+			disp(sprintf('    name: %s',cluster.name));
+			disp(sprintf('    login: %s',cluster.login));
+			disp(sprintf('    port: %i',cluster.port));
+			disp(sprintf('    time: %i (in minutes)',cluster.time));
+			disp(sprintf('    nodes: %i (number of nodes)',cluster.nodes));
+			disp(sprintf('    ppn: %i (process per nodes)',cluster.ppn));
+			disp(sprintf('    queue: %s',cluster.queue));
+			disp(sprintf('    codepath: %s',cluster.codepath));
+			disp(sprintf('    executionpath: %s',cluster.executionpath));
+		end
+		%}}}
+		function md = checkconsistency(cluster,md,solution,analyses) % {{{
+
+			available_queues={'brp106_a_g_sc_default','open'};
+			queue_requirements_time=[Inf 48*60];
+			queue_requirements_np=[260 260];
+
+			QueueRequirements(available_queues,queue_requirements_time,queue_requirements_np,cluster.queue,cluster.ppn*cluster.nodes,1)
+
+			%Miscelaneous
+			if cluster.ppn>20, md = checkmessage(md,'cannot request more that 20 cores per node'); end
+			if isempty(cluster.login), md = checkmessage(md,'login empty'); end
+			if isempty(cluster.codepath), md = checkmessage(md,'codepath empty'); end
+			if isempty(cluster.executionpath), md = checkmessage(md,'executionpath empty'); end
+		end
+		%}}}
+		function BuildQueueScript(cluster,dirname,modelname,solution,io_gather,isvalgrind,isgprof,isdakota,isoceancoupling) % {{{
+
+			if(isvalgrind), disp('valgrind not supported by cluster, ignoring...'); end
+			if(isgprof),    disp('gprof not supported by cluster, ignoring...'); end
+
+			%write queuing script 
+			fid=fopen([modelname '.queue'],'w');
+			fprintf(fid,'#PBS -A %s\n', cluster.queue); %open or brp106....
+			fprintf(fid,'#PBS -l nodes=%i:ppn=%i:stmem\n',cluster.nodes,cluster.ppn);
+			fprintf(fid,'#PBS -l walltime=%i\n',cluster.time*60); % walltime is in seconds
+			fprintf(fid,'#PBS -o %s.outlog\n',(modelname));
+			fprintf(fid,'#PBS -e %s.errlog\n',(modelname));
+			fprintf(fid,'source ~/.bashrc\n');
+			fprintf(fid,'source $ISSM_DIR/etc/environment.sh\n');
+			for i=1:numel(cluster.modules)
+				fprintf(fid,'module load %s\n', cluster.modules{i});
+			end
+			fprintf(fid,'mpirun -np %i %s/issm.exe %s %s %s\n',cluster.nodes*cluster.ppn,cluster.codepath,solution,[cluster.executionpath '/' dirname],modelname);
+			if ~io_gather, %concatenate the output files:
+				fprintf(fid,'cat %s.outbin.* > %s.outbin',modelname,modelname);
+			end
+			fclose(fid);
+		end %}}}
+		function UploadQueueJob(cluster,modelname,dirname,filelist)% {{{
+
+			%compress the files into one zip.
+			compressstring=['tar -zcf ' dirname '.tar.gz '];
+			for i=1:numel(filelist),
+				compressstring = [compressstring ' ' filelist{i}];
+			end
+			system(compressstring);
+
+			disp('uploading input file and queueing script');
+			issmscpout(cluster.name,cluster.executionpath,cluster.login,cluster.port,{[dirname '.tar.gz']});
+
+		end %}}}
+		function LaunchQueueJob(cluster,modelname,dirname,filelist,restart,batch)% {{{
+
+			disp('launching solution sequence on remote cluster');
+			if ~isempty(restart)
+				launchcommand=['cd ' cluster.executionpath ' && cd ' dirname ' && hostname && qsub ' modelname '.queue '];
+			else
+				launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
+					' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && hostname && qsub ' modelname '.queue '];
+			end
+			issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
+		end %}}}
+		function Download(cluster,dirname,filelist)% {{{
+
+			%copy files from cluster to current directory
+			directory=[cluster.executionpath '/' dirname '/'];
+			issmscpin(cluster.name,cluster.login,cluster.port,directory,filelist);
+
+		end %}}}
+	end
+end