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Changeset 20857
- Timestamp:
- 07/05/16 14:37:32 (9 years ago)
- File:
-
- 1 edited
-
issm/trunk-jpl/src/m/classes/clusters/pfe.m (modified) (2 diffs)
Legend:
- Unmodified
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issm/trunk-jpl/src/m/classes/clusters/pfe.m
r20533 r20857 17 17 queue = 'long'; 18 18 time = 12*60; 19 processor = ' wes';19 processor = 'ivy'; 20 20 codepath = ''; 21 21 executionpath = ''; … … 200 200 end 201 201 end %}}} 202 function BuildQueueScriptMultipleModels(cluster,dirname,modelname,solution,dirnames,modelnames,nps) % {{{203 204 %some checks:205 if isempty(modelname), error('BuildQueueScriptMultipleModels error message: need a non empty model name!');end206 207 %what is the executable being called?208 executable='issm_slr.exe';209 210 if ispc(), error('BuildQueueScriptMultipleModels not support yet on windows machines');end;211 212 %write queuing script213 fid=fopen([modelname '.queue'],'w');214 215 fprintf(fid,'#PBS -S /bin/bash\n');216 fprintf(fid,'#PBS -N %s\n',modelname);217 fprintf(fid,'#PBS -l select=%i:ncpus=%i:model=%s\n',cluster.numnodes,cluster.cpuspernode,cluster.processor);218 fprintf(fid,'#PBS -l walltime=%i\n',cluster.time*60); %walltime is in seconds.219 fprintf(fid,'#PBS -q %s \n',cluster.queue);220 fprintf(fid,'#PBS -W group_list=%s\n',cluster.grouplist);221 fprintf(fid,'#PBS -m e\n');222 fprintf(fid,'#PBS -o %s.outlog \n',[cluster.executionpath '/' dirname '/' modelname]);223 fprintf(fid,'#PBS -e %s.errlog \n\n',[cluster.executionpath '/' dirname '/' modelname]);224 fprintf(fid,'. /usr/share/modules/init/bash\n\n');225 fprintf(fid,'module load comp-intel/2015.0.090\n');226 fprintf(fid,'module load mpi-sgi/mpt.2.12r16\n');227 fprintf(fid,'export PATH="$PATH:."\n\n');228 fprintf(fid,'export MPI_GROUP_MAX=64\n\n');229 fprintf(fid,'export ISSM_DIR="%s/../"\n',cluster.codepath); %FIXME230 fprintf(fid,'source $ISSM_DIR/etc/environment.sh\n'); %FIXME231 fprintf(fid,'cd %s/%s/\n\n',cluster.executionpath,dirname);232 233 %number of cpus:234 mpistring=sprintf('mpiexec -np %i ',cluster.numnodes*cluster.cpuspernode);235 236 %executable:237 mpistring=[mpistring sprintf('%s/%s ',cluster.codepath,executable)];238 239 %solution name:240 mpistring=[mpistring sprintf('%s ',EnumToString(solution))];241 242 %execution directory and model name:243 mpistring=[mpistring sprintf('%s/%s %s',cluster.executionpath,dirname,modelname)];244 245 %inform main executable of how many icecaps, glaciers and earth models are being run:246 mpistring=[mpistring sprintf(' %i ',length(dirnames))];247 248 %icecaps, glaciers and earth location, names and number of processors associated:249 for i=1:length(dirnames),250 mpistring=[mpistring sprintf(' %s/%s %s %i ',cluster.executionpath,dirnames{i},modelnames{i},nps{i})];251 end252 253 %write this long string to disk:254 fprintf(fid,mpistring);255 fclose(fid);256 257 if cluster.interactive,258 fid=fopen([modelname '.run'],'w');259 260 %number of cpus:261 mpistring=sprintf('mpiexec -np %i ',cluster.numnodes*cluster.cpuspernode);262 263 %executable:264 mpistring=[mpistring sprintf('%s/%s ',cluster.codepath,executable)];265 266 %solution name:267 mpistring=[mpistring sprintf('%s ',EnumToString(solution))];268 269 %execution directory and model name:270 mpistring=[mpistring sprintf('%s/%s %s',cluster.executionpath,dirname,modelname)];271 272 %inform main executable of how many icecaps, glaciers and earth models are being run:273 mpistring=[mpistring sprintf(' %i ',length(dirnames))];274 275 %icecaps, glaciers and earth location, names and number of processors associated:276 for i=1:length(dirnames),277 mpistring=[mpistring sprintf(' %s/Interactive%i %s %i ',cluster.executionpath,cluster.interactive,modelnames{i},nps{i})];278 end279 280 %write this long string to disk:281 fprintf(fid,mpistring);282 fclose(fid);283 284 fid=fopen([modelname '.errlog'],'w');285 fclose(fid);286 fid=fopen([modelname '.outlog'],'w');287 fclose(fid);288 end 289 end290 %}}}202 function BuildQueueScriptMultipleModels(cluster,dirname,modelname,solution,dirnames,modelnames,nps) % {{{ 203 204 %some checks: 205 if isempty(modelname), error('BuildQueueScriptMultipleModels error message: need a non empty model name!');end 206 207 %what is the executable being called? 208 executable='issm_slr.exe'; 209 210 if ispc(), error('BuildQueueScriptMultipleModels not support yet on windows machines');end; 211 212 %write queuing script 213 fid=fopen([modelname '.queue'],'w'); 214 215 fprintf(fid,'#PBS -S /bin/bash\n'); 216 fprintf(fid,'#PBS -N %s\n',modelname); 217 fprintf(fid,'#PBS -l select=%i:ncpus=%i:model=%s\n',cluster.numnodes,cluster.cpuspernode,cluster.processor); 218 fprintf(fid,'#PBS -l walltime=%i\n',cluster.time*60); %walltime is in seconds. 219 fprintf(fid,'#PBS -q %s \n',cluster.queue); 220 fprintf(fid,'#PBS -W group_list=%s\n',cluster.grouplist); 221 fprintf(fid,'#PBS -m e\n'); 222 fprintf(fid,'#PBS -o %s.outlog \n',[cluster.executionpath '/' dirname '/' modelname]); 223 fprintf(fid,'#PBS -e %s.errlog \n\n',[cluster.executionpath '/' dirname '/' modelname]); 224 fprintf(fid,'. /usr/share/modules/init/bash\n\n'); 225 fprintf(fid,'module load comp-intel/2015.0.090\n'); 226 fprintf(fid,'module load mpi-sgi/mpt.2.12r16\n'); 227 fprintf(fid,'export PATH="$PATH:."\n\n'); 228 fprintf(fid,'export MPI_GROUP_MAX=64\n\n'); 229 fprintf(fid,'export ISSM_DIR="%s/../"\n',cluster.codepath); %FIXME 230 fprintf(fid,'source $ISSM_DIR/etc/environment.sh\n'); %FIXME 231 fprintf(fid,'cd %s/%s/\n\n',cluster.executionpath,dirname); 232 233 %number of cpus: 234 mpistring=sprintf('mpiexec -np %i ',cluster.numnodes*cluster.cpuspernode); 235 236 %executable: 237 mpistring=[mpistring sprintf('%s/%s ',cluster.codepath,executable)]; 238 239 %solution name: 240 mpistring=[mpistring sprintf('%s ',EnumToString(solution))]; 241 242 %execution directory and model name: 243 mpistring=[mpistring sprintf('%s/%s %s',cluster.executionpath,dirname,modelname)]; 244 245 %inform main executable of how many icecaps, glaciers and earth models are being run: 246 mpistring=[mpistring sprintf(' %i ',length(dirnames))]; 247 248 %icecaps, glaciers and earth location, names and number of processors associated: 249 for i=1:length(dirnames), 250 mpistring=[mpistring sprintf(' %s/%s %s %i ',cluster.executionpath,dirnames{i},modelnames{i},nps{i})]; 251 end 252 253 %write this long string to disk: 254 fprintf(fid,mpistring); 255 fclose(fid); 256 257 if cluster.interactive, 258 fid=fopen([modelname '.run'],'w'); 259 260 %number of cpus: 261 mpistring=sprintf('mpiexec -np %i ',cluster.numnodes*cluster.cpuspernode); 262 263 %executable: 264 mpistring=[mpistring sprintf('%s/%s ',cluster.codepath,executable)]; 265 266 %solution name: 267 mpistring=[mpistring sprintf('%s ',EnumToString(solution))]; 268 269 %execution directory and model name: 270 mpistring=[mpistring sprintf('%s/%s %s',cluster.executionpath,dirname,modelname)]; 271 272 %inform main executable of how many icecaps, glaciers and earth models are being run: 273 mpistring=[mpistring sprintf(' %i ',length(dirnames))]; 274 275 %icecaps, glaciers and earth location, names and number of processors associated: 276 for i=1:length(dirnames), 277 mpistring=[mpistring sprintf(' %s/Interactive%i %s %i ',cluster.executionpath,cluster.interactive,modelnames{i},nps{i})]; 278 end 279 280 %write this long string to disk: 281 fprintf(fid,mpistring); 282 fclose(fid); 283 284 fid=fopen([modelname '.errlog'],'w'); 285 fclose(fid); 286 fid=fopen([modelname '.outlog'],'w'); 287 fclose(fid); 288 end 289 end 290 %}}} 291 291 function BuildKrigingQueueScript(cluster,modelname,solution,io_gather,isvalgrind,isgprof) % {{{ 292 292
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