Index: /issm/trunk-jpl/externalpackages/boost/install-1.55-macosx-el_capitan.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/boost/install-1.55-macosx-el_capitan.sh	(revision 20229)
+++ /issm/trunk-jpl/externalpackages/boost/install-1.55-macosx-el_capitan.sh	(revision 20229)
@@ -0,0 +1,44 @@
+#!/bin/bash
+set -eu
+
+#Note of caution:  stop after boostrap phase, and run 
+#bjam --debug-configuration, to figure out which paths boost is using to include 
+#python. make sure everyone of these paths is covered by python. If not, just make 
+#symlinks in externalpackages/python to what boost is expecting. Ther is NO WAY 
+#to get the boost library to include python support without doing that. 
+
+#Some cleanup
+rm -rf install boost_1_55_0 src
+mkdir install src
+
+#Download from ISSM server
+python2.7 $ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/boost_1_55_0.tar.gz' 'boost_1_55_0.tar.gz'
+
+#Untar 
+tar -zxvf  boost_1_55_0.tar.gz
+
+#Move boost into install directory
+mv boost_1_55_0/* src
+rm -rf boost_1_55_0
+
+patch src/boost/atomic/detail/cas128strong.hpp ./configs/1.55/cas128strong.hpp.patch
+patch src/boost/atomic/detail/gcc-atomic.hpp ./configs/1.55/gcc-atomic.hpp.patch
+patch src/tools/build/v2/user-config.jam ./configs/1.55/user-config.jam.patch
+patch src/tools/build/v2/tools/darwin.jam ./configs/1.55/darwin.jam.patch
+patch src/tools/build/v2/tools/darwin.py ./configs/1.55/darwin.py.patch
+
+#Configure and compile
+cd src 
+./bootstrap.sh \
+	--prefix="$ISSM_DIR/externalpackages/boost/install" \
+	--with-python=python 
+
+#Compile boost
+# Need gcc with iconv installed in a location that has been added to your path
+export CC=/usr/local/gfortan/bin/gcc 
+export CXX=/usr/local/gfortran/bin/g++
+./bjam toolset=darwin cxxflags=-std=gnu++11 link=static install
+
+#put bjam into install also: 
+mkdir ../install/bin
+cp bjam ../install/bin
Index: /issm/trunk-jpl/externalpackages/dakota/install-6.2-macosx-el_capitan.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-6.2-macosx-el_capitan.sh	(revision 20229)
+++ /issm/trunk-jpl/externalpackages/dakota/install-6.2-macosx-el_capitan.sh	(revision 20229)
@@ -0,0 +1,58 @@
+#!/bin/bash
+set -eu
+
+#Some cleanup
+rm -rf Dakota
+rm -rf src 
+rm -rf build 
+rm -rf install 
+mkdir src build install 
+
+#Download from ISSM server
+#$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/dakota-6.2-public.src.tar.gz' 'dakota-6.2-public-src.tar.gz'
+
+#Untar 
+tar -zxvf dakota-6.2-public-src.tar.gz
+
+#Move Dakota to src directory
+mv dakota-6.2.0.src/* src
+rm -rf dakota-6.2.0.src
+
+#Set up Dakota cmake variables and config
+export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src
+export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build
+export MPIHOME=$ISSM_DIR/externalpackages/mpich/install
+cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake
+patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/6.2/BuildDakotaCustom.cmake.yosemite.patch
+patch $DAK_SRC/cmake/DakotaDev.cmake configs/6.2/DakotaDev.cmake.patch
+patch $DAK_SRC/CMakeLists.txt configs/6.2/CMakeLists.txt.patch
+
+#Apply patches
+patch src/src/NonDSampling.cpp configs/6.2/NonDSampling.cpp.patch
+patch src/src/NonDLocalReliability.cpp configs/6.2/NonDLocalReliability.cpp.patch
+patch src/packages/pecos/src/pecos_global_defs.hpp configs/6.2/pecos_global_defs.hpp.patch
+
+#Configure dakota
+cd $DAK_BUILD
+
+cmake -D CMAKE_C_COMPILER=$ISSM_DIR/externalpackages/mpich/install/bin/mpicc \
+      -D CMAKE_CXX_COMPILER=$ISSM_DIR/externalpackages/mpich/install/bin/mpicxx \
+      -D CMAKE_Fortran_COMPILER=$ISSM_DIR/externalpackages/mpich/install/bin/mpif77 \
+      -D LDFLAGS="-std=gnu++11" \
+      -D CXXFLAGS="-std=gnu++11" \
+      -C $DAK_SRC/cmake/BuildDakotaCustom.cmake \
+      -C $DAK_SRC/cmake/DakotaDev.cmake \
+      $DAK_SRC
+cd ..
+
+#Compile and install dakota
+cd $DAK_BUILD
+if [ $# -eq 0 ];
+then
+	make
+	make install
+else
+	make -j $1
+	make -j $1 install
+fi
+cd ..