Index: sm/LICENSE =================================================================== --- /issm/LICENSE (revision 28275) +++ (revision ) @@ -1,28 +1,0 @@ -Copyright (c) 2002-2011, California Institute of Technology. -All rights reserved. Based on Government Sponsored Research under contracts -NAS7-1407 and/or NAS7-03001. - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions are met: - - 1. Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - 3. Neither the name of the California Institute of Technology (Caltech), - its operating division the Jet Propulsion Laboratory (JPL), the National - Aeronautics and Space Administration (NASA), nor the names of its - contributors may be used to endorse or promote products derived from - this software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND -ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED -WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE -DISCLAIMED. IN NO EVENT SHALL THE CALIFORNIA INSTITUTE OF TECHNOLOGY BE LIABLE -FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL -DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR -SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER -CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, -OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE -OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Index: /issm/trunk/COPYING =================================================================== --- /issm/trunk/COPYING (revision 1) +++ /issm/trunk/COPYING (revision 1) @@ -0,0 +1,1 @@ +link /u/wilkes-r1b/larour/Bin/automake/share/automake-1.10/COPYING Index: /issm/trunk/ChangeLog =================================================================== --- /issm/trunk/ChangeLog (revision 1) +++ /issm/trunk/ChangeLog (revision 1) @@ -0,0 +1,2499 @@ +2009-04-22 17:03 seroussi + + * test/Verification/: test1_icesheet_noicefront/Front.exp, + test2_icesheet_icefront/Square.par, + test3_iceshelf_icefront/Square.par, + test4_icesheet_noicefront_3d/Front.exp, + test5_icesheet_icefront_3d/Square.par, + test6_iceshelf_icefront_3d/Square.par, + test7_penalties_iceshelf_3d/Square.par, + test8_icesheet_noicefront_stokes/Front.exp, + test9_icesheet_icefront_stokes/Square.par, + test10_iceshelf_icefront_stokes/Square.par, + test11_penalties_iceshelf_allmodels/Square.par, + test_cielo/Square.par: simplified Square.par in tests + +2009-04-22 16:00 seroussi + + * src/m/classes/@model/model.m: minor + +2009-04-22 11:56 jschierm + + * src/m/classes/public/displayqmu.m: Still trying to get displayqmu + right. + +2009-04-22 09:57 jschierm + + * src/m/classes/: @model/model.m, public/displayqmu.m: Slight + changes in model class for qmu defaults.. + +2009-04-22 09:26 morlighe + + * src/m/classes/public/: plugdata.m, plugvelocities.m: minor + +2009-04-22 07:46 seroussi + + * test/Verification/test5_icesheet_icefront_3d/: Square.par, + archive_melting.mat, archive_melting_transient.mat, + archive_pattyn.mat, archive_temperature.mat, + archive_temperature_transient.mat, archive_thickness.mat: new + archives for test5 with default parameters + +2009-04-22 07:24 seroussi + + * test/Verification/test9_icesheet_icefront_stokes/: + archive_melting.mat, archive_stokes.mat, archive_temperature.mat: + test9 updated archives with default parameters + +2009-04-21 17:03 morlighe + + * src/m/utils/BC/: SetIceSheetBC.m, SetIceShelfBC.m, + SetMarineIceSheetBC.m: Added 2 other BC creation routines + +2009-04-21 16:53 seroussi + + * test/Verification/test8_icesheet_noicefront_stokes/: + archive_melting.mat, archive_stokes.mat, archive_temperature.mat: + test8 updated archives with default parameters + +2009-04-21 16:50 seroussi + + * test/Verification/test7_penalties_iceshelf_3d/: + archive_melting.mat, archive_temperature.mat, + archive_velocity.mat: test7 updated archives with default + parameters + +2009-04-21 16:49 seroussi + + * test/Verification/test6_iceshelf_icefront_3d/: + archive_melting.mat, archive_melting_transient.mat, + archive_pattyn.mat, archive_temperature.mat, + archive_temperature_transient.mat, archive_thickness.mat: test6 + updated archives with default parameters + +2009-04-21 16:49 seroussi + + * test/Verification/test4_icesheet_noicefront_3d/: + archive_hutter.mat, archive_melting.mat, archive_pattyn.mat, + archive_temperature.mat: test4 updated archives with default + parameters + +2009-04-21 16:47 seroussi + + * test/Verification/test3_iceshelf_icefront/: archive_acc.mat, + archive_ice.mat, archive_macayeal.mat, archive_thickness.mat: + test3 archives with default parameters + +2009-04-21 16:45 seroussi + + * test/Verification/test3_iceshelf_icefront/Square.par: minor + +2009-04-21 16:18 morlighe + + * src/m/classes/public/plugvelocities.m: minor + +2009-04-21 16:11 seroussi + + * src/m/classes/public/ismodelselfconsistent.m: minor + +2009-04-21 16:09 morlighe + + * src/m/classes/public/parameterize.m: better error message + +2009-04-21 15:52 jschierm + + * src/m/classes/: @model/model.m, public/displayqmu.m: Elimination + of qmu parameters that will be contained within qmu_params + structure. + +2009-04-21 15:36 morlighe + + * src/m/classes/public/: plugdata.m, plugvelocities.m: Added 2 + useful routines to load data and plug them onto the model easily + (cf Eric Rignot's comments) + +2009-04-21 15:23 jschierm + + * src/m/solutions/dakota/: dakota_in_data.m, dakota_in_write.m, + dakota_m_write.m, setupdesign/QmuSetupDesign.m, + setupdesign/setupdrag.m, setupdesign/setupgravity.m, + setupdesign/setupheatcapacity.m, setupdesign/setuprhoice.m, + setupdesign/setuprhowater.m, setupdesign/setupriftsfriction.m, + setupdesign/setupthermalconductivity.m, + setupdesign/setupthickness.m, + updatefunctions/QmuUpdateFunctions.m, + updatefunctions/updatedrag.m, updatefunctions/updategravity.m, + updatefunctions/updateheatcapacity.m, + updatefunctions/updaterho_ice.m, + updatefunctions/updaterho_water.m, + updatefunctions/updateriftsfriction.m, + updatefunctions/updatethermalconductivity.m, + updatefunctions/updatethickness.m: Addition of varargin so that + ISSM can pass model and other data transparently through Dakota + scripts to QmuSetupDesign and QmuUpdateFunctions. + +2009-04-21 15:01 seroussi + + * src/m/classes/public/ismodelselfconsistent.m: minor typo + +2009-04-21 14:58 seroussi + + * test/Verification/test11_penalties_iceshelf_allmodels/: + Square.par, archive_melting.mat, archive_temperature.mat, + archive_velocity.mat: test11 archives + beginning of Square.par + +2009-04-21 14:58 seroussi + + * test/Verification/test10_iceshelf_icefront_stokes/: Square.par, + archive_melting.mat, archive_stokes.mat, archive_temperature.mat: + test10 archives + beginning of Square.par + +2009-04-21 14:56 seroussi + + * test/Verification/: test3_iceshelf_icefront/Square.par, + test5_icesheet_icefront_3d/Square.par, + test6_iceshelf_icefront_3d/Square.par, + test7_penalties_iceshelf_3d/Square.par, + test9_icesheet_icefront_stokes/Square.par: beginning of + Square.par + +2009-04-21 14:55 seroussi + + * test/Verification/test2_icesheet_icefront/: Square.par, + archive_acc.mat, archive_hutter.mat, archive_ice.mat, + archive_macayeal.mat, archive_thickness.mat: test2 archives + + beginning of Square.par + +2009-04-21 14:55 seroussi + + * test/Verification/test1_icesheet_noicefront/: archive_acc.mat, + archive_hutter.mat, archive_ice.mat, archive_macayeal.mat: test1 + archives + +2009-04-21 14:34 jschierm + + * src/m/solutions/dakota/: dakota_in_data.m, dakota_in_write.m, + dakota_m_write.m, setupdesign/QmuSetupDesign.m, + setupdesign/setupdrag.m, setupdesign/setupgravity.m, + setupdesign/setupheatcapacity.m, setupdesign/setuprhoice.m, + setupdesign/setuprhowater.m, setupdesign/setupriftsfriction.m, + setupdesign/setupthermalconductivity.m, + setupdesign/setupthickness.m, + updatefunctions/QmuUpdateFunctions.m, + updatefunctions/updatedrag.m, updatefunctions/updategravity.m, + updatefunctions/updateheatcapacity.m, + updatefunctions/updaterho_ice.m, + updatefunctions/updaterho_water.m, + updatefunctions/updateriftsfriction.m, + updatefunctions/updatethermalconductivity.m, + updatefunctions/updatethickness.m: Removal of model class so that + Dakota and ISSM scripts are independent. + +2009-04-21 14:06 morlighe + + * src/m/classes/public/ismodelselfconsistent.m: + Ismodelselfconsistent rewritten + +2009-04-21 13:37 seroussi + + * src/m/utils/UpdateArchive/updatearchive.m: to fit the new names + +2009-04-21 13:28 seroussi + + * test/Verification/: test1_icesheet_noicefront/Square.par, + test4_icesheet_noicefront_3d/Square.par, + test8_icesheet_noicefront_stokes/Square.par: cosmetics + +2009-04-21 12:27 morlighe + + * src/m/classes/public/parameterize.m: Fixed parameter file error + message + +2009-04-21 12:03 seroussi + + * test/Verification/test8_icesheet_noicefront_stokes/: Square.par, + runme.m: simplified Square.par for IceSheet test 8 + +2009-04-21 12:02 seroussi + + * test/Verification/test4_icesheet_noicefront_3d/: Square.par, + runme.m: simplified Sqaure.par for test4 + +2009-04-21 12:01 seroussi + + * test/Verification/test1_icesheet_noicefront/: Square.par, + runme.m: simplified Square.par test1 + +2009-04-21 11:54 seroussi + + * src/m/classes/public/ismodelselfconsistent.m: precised some + checks depending on solutiontype + +2009-04-21 11:53 seroussi + + * src/m/utils/BC/SetIceSheetBC.m: set melting and accumulation to + zeros if nothing specified + +2009-04-21 11:21 jschierm + + * src/m/classes/: @continuous_design/continuous_design.m, + @continuous_design/display.m, + @continuous_state/continuous_state.m, + @least_squares_term/least_squares_term.m, + @normal_uncertain/normal_uncertain.m, + @objective_function/objective_function.m, + @response_function/response_function.m, + @linear_equality_constraint/linear_equality_constraint.m, + @linear_inequality_constraint/linear_inequality_constraint.m, + @nonlinear_equality_constraint/nonlinear_equality_constraint.m, + @nonlinear_inequality_constraint/nonlinear_inequality_constraint.m: + Set defaults to Dakota values but filter them out before writing. + +2009-04-21 10:54 seroussi + + * src/m/classes/public/ismodelselfconsistent.m: optimized + ismodelselfconsistent depending on package, solutiontype + +2009-04-21 10:53 seroussi + + * src/m/utils/BC/SetIceSheetBC.m: new routine to create IceSheetBC + +2009-04-21 09:43 jschierm + + * src/m/utils/Array/allequal.m: Function to return empty array if + all array elements are equal to given value. + +2009-04-20 17:34 morlighe + + * src/m/classes/@model/model.m: Added some initial values in model + +2009-04-20 10:28 morlighe + + * src/m/classes/public/plot/plot_streamlines.m: minor + +2009-04-20 10:24 morlighe + + * src/m/classes/public/plot/: applyoptions.m, parse_options.m, + plot_streamlines.m, plotdoc.m: Added streamlines plot options, + still some bugs due to tsearch matlab function + +2009-04-20 09:57 seroussi + + * test/Validation/ISMIP/TestD/Square.par: minor typo + +2009-04-20 08:33 seroussi + + * src/m/classes/public/plot/plot_basaldrag.m: possibility of doing + sectionvalues on basal_drag + +2009-04-17 17:20 seroussi + + * src/m/classes/public/plot/plotdoc.m: added capability in doc + +2009-04-17 17:19 seroussi + + * src/m/classes/public/plot/plot_dealer.m: added basal_drag x or y + in plot + +2009-04-17 17:18 seroussi + + * src/m/classes/public/plot/plot_basaldrag.m: added x or y + component in basal_drag + +2009-04-17 16:20 jschierm + + * src/m/classes/: @model/model.m, public/displayqmu.m: Replacement + of comments that got clobbered in previous commit (oops). + +2009-04-17 16:13 jschierm + + * src/m/classes/: @model/model.m, public/displayqmu.m: Addition of + qmu_method and qmu_params to model class. + +2009-04-17 10:25 jschierm + + * src/m/solutions/dakota/: dakota_in_data.m, dakota_in_write.m: + Implementation of linear constraints. + +2009-04-17 10:20 jschierm + + * src/m/classes/@dakota_method/: dakota_method.m, display.m, + dmeth_params_write.m: Implementation of linear constraints. + +2009-04-17 09:27 jschierm + + * src/m/classes/: @continuous_design/continuous_design.m, + @continuous_state/continuous_state.m, + @least_squares_term/least_squares_term.m, + @linear_equality_constraint/linear_equality_constraint.m, + @linear_inequality_constraint/linear_inequality_constraint.m, + @nonlinear_equality_constraint/nonlinear_equality_constraint.m, + @nonlinear_inequality_constraint/nonlinear_inequality_constraint.m, + @normal_uncertain/normal_uncertain.m, + @objective_function/objective_function.m, + @response_function/response_function.m: Change of method names + from dvar_ and dresp_ to prop_ + +2009-04-16 14:46 morlighe + + * src/m/classes/public/plot/plot_tensor_principalaxis.m: better way + of plotting principal axis + +2009-04-16 12:12 morlighe + + * src/m/classes/public/plot/: plot_tensor_components.m, + plot_tensor_principal.m, plot_tensor_principalaxis.m: better way + to plot principal axis + +2009-04-16 12:06 seroussi + + * test/Validation/EISMINT/MassConservation/runme.m: minor (wrong + name) + +2009-04-16 12:05 seroussi + + * test/Validation/EISMINT/MassConservation/CrossLine.exp: minor + +2009-04-16 11:57 morlighe + + * src/m/solutions/ice/StrainRateCompute.m: minor + +2009-04-16 11:35 morlighe + + * src/m/classes/public/plot/plot_tensor_principalaxis.m: Fixed bug + in principal axis plots + +2009-04-16 11:08 morlighe + + * src/m/classes/public/plot/: parse_options.m, plot_quiver.m, + plot_quiver3.m, plot_quivervel.m, plot_tensor_principalaxis.m, + plotdoc.m: Added density option for quiver plots (Thanks Ala) + +2009-04-16 10:39 morlighe + + * doc/website/doc_html/about.html: Minor + +2009-04-16 08:56 seroussi + + * src/m/classes/public/plot/plotdoc.m: wrong name of option + +2009-04-16 07:19 morlighe + + * startup.m: status variable can be cleared (not needed in matlab + workspace) + +2009-04-16 07:16 morlighe + + * src/m/classes/public/reorder.m: added mesh reordering (to be used + right after md=mesh( + +2009-04-16 07:11 morlighe + + * src/m/classes/public/plot/plot_dealer.m: minor (avoid error + message) + +2009-04-15 16:33 morlighe + + * doc/website/doc_html/: about.html, documentation.html: minor + +2009-04-15 14:13 ala + + * src/m/solutions/ice/StrainRateCompute.m: 1/a in principalvalues + of stainrate + +2009-04-15 14:11 ala + + * src/m/classes/public/solve.m: corrected typo problem + +2009-04-15 07:30 morlighe + + * src/m/classes/public/plot/plot_contour.m: no error in contour if + no contour found + +2009-04-15 07:21 morlighe + + * src/m/solutions/macayeal/macayealcontrol.m: no plots if + md.plot=0, use drawnow instead of pause(1) + +2009-04-14 16:14 morlighe + + * test/Validation/ISMIP/: README, TestA/README: Minor + +2009-04-14 16:11 seroussi + + * test/Validation/ISMIP/: README, description.pdf, results.pdf, + TestA/Front.exp, TestA/README, TestA/Square.par, TestA/runme.m, + TestB/Front.exp, TestB/README, TestB/Square.par, TestB/runme.m, + TestC/Front.exp, TestC/README, TestC/Square.par, TestC/runme.m, + TestD/Front.exp, TestD/README, TestD/Square.par, TestD/runme.m, + TestE/Front.exp, TestE/README, TestE/Square.par, TestE/data.mat, + TestE/data.txt, TestE/runme.m: added ISMIP_HOM tests + +2009-04-10 13:32 morlighe + + * contributors.txt: added photo source + +2009-04-10 12:09 morlighe + + * src/m/utils/Exp/manipulation/mergeprofiles.m: initialize tips + just in case + +2009-04-10 12:05 morlighe + + * src/m/utils/Exp/manipulation/mergeprofiles.m: Fixed bug again... + +2009-04-10 11:43 morlighe + + * src/m/utils/Exp/manipulation/: cutarea.m, mergeprofiles.m, + removeseveralpoints.m: Fixed some bugs + +2009-04-10 10:52 morlighe + + * src/m/utils/Exp/expmaster.m: some bugs remaining + +2009-04-10 10:42 morlighe + + * src/m/utils/Exp/manipulation/: addendprofile.m, + addinsideprofile.m, closeprofile.m, cutarea.m, cutprofile.m, + mergeprofiles.m, modifyposition.m, removepoints.m, + removeprofile.m, removeseveralpoints.m: Minor + +2009-04-09 09:52 morlighe + + * test/Validation/EISMINT/: README, description_EISMINT.pdf, + shelf-descr.pdf, Diagnostic1/README, Diagnostic1/runme.m, + Diagnostic2/README, Diagnostic2/runme.m, MassConservation/README, + MassConservation/runme.m, Transient/README, Transient/runme.m: + Minor + +2009-04-09 09:40 seroussi + + * test/Validation/EISMINT/: README, shelf-descr.pdf, + Diagnostic1/DomainOutline.exp, Diagnostic1/Front.exp, + Diagnostic1/README, Diagnostic1/Square.par, Diagnostic1/runme.m, + Diagnostic2/DomainOutline.exp, Diagnostic2/Front.exp, + Diagnostic2/README, Diagnostic2/Square.par, Diagnostic2/runme.m, + MassConservation/CrossLine.exp, + MassConservation/DomainOutline.exp, MassConservation/Front.exp, + MassConservation/README, MassConservation/Square.par, + MassConservation/runme.m, Transient/DomainOutline.exp, + Transient/Front.exp, Transient/README, Transient/Square.par, + Transient/runme.m: Added EISMINT test for MacAyeal and + prognostic2d + +2009-04-09 07:50 morlighe + + * doc/website/doc_c/: createchtmldoc.sh, layoutissm.xml: minor + changes + +2009-04-09 07:37 morlighe + + * src/m/utils/Mesh/: meshmaker.m, squaremesh.m: Improved squaremesh + +2009-04-08 15:29 jschierm + + * src/m/classes/: @linear_inequality_constraint/display.m, + @linear_inequality_constraint/linear_inequality_constraint.m, + @linear_equality_constraint/display.m, + @linear_equality_constraint/linear_equality_constraint.m: + Addition of linear constraint classes. + +2009-04-08 14:55 morlighe + + * src/m/classes/public/plot/processdata.m: this way it is better + +2009-04-08 14:52 morlighe + + * src/m/classes/public/plot/processdata.m: not needed + +2009-04-08 14:49 morlighe + + * src/m/classes/public/plot/processdata.m: minor + +2009-04-08 14:23 seroussi + + * src/m/utils/Mesh/meshmaker.m: better comments + +2009-04-08 14:16 seroussi + + * src/m/utils/Mesh/meshmaker.m: added meshmaker for structerated + sqaure mesh + +2009-04-08 13:50 morlighe + + * doc/website/doc_html/: about.html: typo + +2009-04-08 13:35 morlighe + + * src/m/classes/public/plot/plot_elementstype.m: fixed + plot_elementstype when Stokes... Matlab crashes with alpha on + patches now... + +2009-04-08 11:55 jschierm + + * src/m/utils/Array/item2str.m: Addition of error checking. + +2009-04-08 11:51 morlighe + + * doc/website/doc_c/: createchtmldoc.sh, doxygen.config, + layoutissm.xml: Added issmlayout + +2009-04-08 11:32 jschierm + + * src/m/classes/@dakota_method/: dakota_method.m, + dmeth_params_write.m: Addition of method-independent parameters + to dakota_method class. + +2009-04-08 11:01 morlighe + + * doc/website/doc_c/createchtmldoc.sh: doxygen tabs are nicer + +2009-04-08 10:45 morlighe + + * doc/website/doc_html/faq.html: minor + +2009-04-08 10:09 morlighe + + * doc/website/doc_html/: about.html, style.css: minor + +2009-04-08 09:00 morlighe + + * src/m/utils/Exp/: expmaster.m, manipulation/addcontour.m: Added + addcontour + +2009-04-08 08:38 morlighe + + * src/m/utils/Exp/expmaster.m: Fixed expmaster: now much much + faster thanks to getframe + +2009-04-07 17:10 seroussi + + * src/m/: classes/public/isresultconsistent.m, + solutions/ice/ModelProcessorDiagnosticHoriz.m: generalised mpcs + for periodic boundary conditions + +2009-04-07 17:08 seroussi + + * src/m/classes/public/: SectionValues.m, plot/plot_section.m: + Fixed Section plot + +2009-04-07 16:53 morlighe + + * src/m/classes/public/plot/plot_section.m: test fix section plot + +2009-04-07 16:42 seroussi + + * src/m/classes/public/SectionValues.m: to be continued + +2009-04-07 16:39 morlighe + + * doc/index.html: Minor + +2009-04-07 16:07 morlighe + + * doc/website/doc_html/style.css: improved menu + +2009-04-07 15:48 morlighe + + * doc/: index.html, website/doc_html/about.html, + website/doc_html/documentation.html, + website/doc_html/download.html, website/doc_html/faq.html, + website/doc_html/features.html, + website/doc_html/installation.html, website/doc_html/style.css, + website/doc_html/wiki.html: Minor + +2009-04-07 15:07 jschierm + + * src/m/solutions/dakota/: dakota_in_data.m, dakota_in_write.m, + dakota_m_write.m: Implementation of parameters in dakota_method + class + +2009-04-07 14:45 jschierm + + * src/m/classes/@dakota_method/: dakota_method.m, display.m, + dmeth_params_merge.m, dmeth_params_write.m: Addition of + method-dependent parameters into dakota_method class. + +2009-04-07 14:33 morlighe + + * src/m/classes/public/thicknessevolution.m: Accelerated + thicnessevolution + +2009-04-07 14:30 morlighe + + * doc/website/doc_html/: download.html, style.css: Added download + webpage + +2009-04-07 14:17 seroussi + + * src/m/classes/public/plot/applyoptions.m: minor + +2009-04-07 14:04 seroussi + + * src/m/classes/public/plot/plot_penalties.m: isnan returned an + empty matrix instead of a boolean + +2009-04-07 13:59 seroussi + + * src/m/classes/public/plot/applyoptions.m: minor + +2009-04-07 13:21 morlighe + + * doc/index.html: minor + +2009-04-07 11:59 morlighe + + * doc/: index.html, website/doc_html/about.html, + website/doc_html/documentation.html, + website/doc_html/download.html, website/doc_html/faq.html, + website/doc_html/features.html, + website/doc_html/installation.html, website/doc_html/style.css, + website/doc_html/wiki.html: Added About us webpage + +2009-04-07 11:16 morlighe + + * doc/: index.html, website/doc_html/installation.html, + website/doc_html/style.css: completed installation page + +2009-04-07 10:49 seroussi + + * src/m/classes/public/extrude.m: dirichlet value (thickness) for + prognostic must be same on each layer + +2009-04-07 10:18 seroussi + + * src/m/classes/public/plot/: plot_contour.m, processdata.m: fixed + contour for 3d meshes (Thank you Mathieu) + +2009-04-07 10:03 seroussi + + * src/m/classes/public/plot/applyoptions.m: minor typo + +2009-04-07 09:16 morlighe + + * doc/: index.html, website/doc_html/about.html, + website/doc_html/at_work.gif, + website/doc_html/documentation.html, + website/doc_html/download.html, website/doc_html/faq.html, + website/doc_html/features.html, + website/doc_html/installation.html, website/doc_html/wiki.html: + prepared some webpages + +2009-04-07 08:38 morlighe + + * src/m/classes/public/plot/: applyoptions.m, parse_options.m, + plot_basaldrag.m, plot_boundaries.m, plot_dealer.m, + plot_drivingstress.m, plot_elementnumbering.m, plot_quivervel.m, + plot_section.m, plot_tensor_components.m, + plot_tensor_principal.m, plot_tensor_principalaxis.m, + plot_transient_movie.m, plot_unit.m, plotmodel.m, processdata.m: + Split plot_unit into plot_dealer and plot_unit to be used by + other special plots. Example: plot_tensor_comp 300 lines -> 79 + lines + +2009-04-07 08:28 seroussi + + * test/Validation/RoundIceSheet/: runme.m, Circ.par: to match + current version of the code + +2009-04-06 15:04 seroussi + + * src/m/solutions/ice/ModelProcessorPrognostic.m: added dirichlet + values for prognostic + +2009-04-06 14:47 jschierm + + * src/m/solutions/dakota/qmu.m: Commented-out MPI statement. + +2009-04-06 14:44 jschierm + + * src/m/solutions/dakota/dakota_in_write.m: Add the rest of the + Dakota methods. + +2009-04-06 14:40 jschierm + + * src/m/solutions/dakota/: dakota_in_data.m, dakota_in_params.m, + dakota_in_write.m, dakota_m_write.m: Implement dakota_method + class and add parametric study methods. + +2009-04-06 11:55 jschierm + + * src/m/solutions/dakota/dakota_in_write.m: Removed find_string.m + to separate utility. + +2009-04-06 11:54 jschierm + + * src/m/solutions/dakota/dakota_in_parse.m: Parse optimization + responses from Dakota .in file. + +2009-04-06 11:52 jschierm + + * src/m/solutions/dakota/dakota_in_write.m: Output response levels + only for nondeterministic methods. + +2009-04-06 11:43 jschierm + + * src/m/solutions/dakota/setupdesign/: QmuSetupDesign.m, + setuprhowater.m, setupgravity.m, setupheatcapacity.m, + setupthermalconductivity.m: Add + rho_water,heat_capacity,thermal_conductivity,and gravity to + setupdesign. + +2009-04-06 11:36 jschierm + + * src/m/classes/@dakota_method/: dakota_method.m, display.m: + Implement dakota_method class to externalize methods for Dakota. + +2009-04-06 11:23 jschierm + + * src/m/utils/Array/any2str.m: Utility to convert anything to a + string. + +2009-04-06 11:21 jschierm + + * src/m/utils/Array/find_string.m: Utility to find a string in a + cell array (from dakota_in_write.m). + +2009-04-06 11:20 jschierm + + * src/m/utils/Array/: item2str.m, string_cell.m, string_vec.m: More + (and revised) utilities for displaying arrays. + +2009-04-06 10:29 morlighe + + * src/m/solutions/dakota/: cielo_ice_script.sh, dakota_in_data.m, + dakota_in_params.m, dakota_in_parse.m, dakota_in_write.m, + dakota_m_write.m, dakota_out_parse.m, plot_boxplot.m, + plot_hist_norm.m, plot_if_bars.m, plot_normdist_bars.m, + plot_normplot.m, plot_prob_bars.m, plot_rlev_bars.m, + plot_sampdist_bars.m, qmu.m, qmuname.m, + responsefunctions/MaxAbsVx.m, responsefunctions/MaxAbsVy.m, + responsefunctions/MaxVel.m, responsefunctions/MaxVx.m, + responsefunctions/MaxVy.m, responsefunctions/MinVel.m, + responsefunctions/MinVx.m, responsefunctions/MinVy.m, + responsefunctions/QmuResponseValue.m, + setupdesign/QmuSetupDesign.m, setupdesign/setupdrag.m, + setupdesign/setuprhoice.m, setupdesign/setupriftsfriction.m, + setupdesign/setupthickness.m, + updatefunctions/QmuUpdateFunctions.m, + updatefunctions/updatedrag.m, updatefunctions/updategravity.m, + updatefunctions/updateheatcapacity.m, + updatefunctions/updaterho_ice.m, + updatefunctions/updaterho_water.m, + updatefunctions/updateriftsfriction.m, + updatefunctions/updatethermalconductivity.m, + updatefunctions/updatethickness.m: readded dakota + +2009-04-06 08:40 morlighe + + * doc/website/: doc_c/doxygenissm.css, doc_c/doxygenissm.css.bak, + doc_c/headerissm.html, doc_c/tabsissm.css, doc_html/style.css, + doc_m/template_issm/m2html.css: improved geneal layout (doc_c) + +2009-04-03 17:40 seroussi + + * src/m/classes/public/plot/plot_transient_movie.m: model neede in + apply_options + +2009-04-03 17:38 morlighe + + * doc/website/doc_m/template_issm/master.tpl: better master index + +2009-04-03 17:31 seroussi + + * src/m/utils/Nightly/nightlyrun.m: minor + +2009-04-03 17:29 morlighe + + * doc/website/doc_m/creatematlabhtmldoc.sh: Minor + +2009-04-03 17:20 morlighe + + * doc/website/: Makefile, doc_c/createchtmldoc.sh, + doc_c/doxygen.config, doc_c/doxygenissm.css, + doc_c/doxygenissm.css.bak, doc_c/footerissm.html, + doc_c/headerissm.html, doc_c/headerissm.png, doc_c/logo_JPL.png, + doc_c/logo_NASA.png, doc_c/tabsissm.css, + doc_html/documentation.html, doc_html/headerissm.png, + doc_html/logo_JPL.png, doc_html/logo_NASA.png, + doc_html/style.css, doc_m/creatematlabhtmldoc.sh, + doc_m/template_issm/alpha.png, doc_m/template_issm/c++.png, + doc_m/template_issm/c.png, doc_m/template_issm/demoicon.gif, + doc_m/template_issm/down.png, doc_m/template_issm/fortran.png, + doc_m/template_issm/graph.tpl, + doc_m/template_issm/headerissm.png, doc_m/template_issm/hp.png, + doc_m/template_issm/left.png, doc_m/template_issm/linux.png, + doc_m/template_issm/logo_JPL.png, + doc_m/template_issm/logo_NASA.png, + doc_m/template_issm/m2html.css, doc_m/template_issm/master.tpl, + doc_m/template_issm/matlabicon.gif, doc_m/template_issm/mdir.tpl, + doc_m/template_issm/mex.png, doc_m/template_issm/mfile.tpl, + doc_m/template_issm/right.png, doc_m/template_issm/sgi.png, + doc_m/template_issm/simulinkicon.gif, + doc_m/template_issm/solaris.png, doc_m/template_issm/todo.tpl, + doc_m/template_issm/up.png, doc_m/template_issm/windows.png, + doc_m/template_issm/template_issm2/alpha.png, + doc_m/template_issm/template_issm2/c++.png, + doc_m/template_issm/template_issm2/c.png, + doc_m/template_issm/template_issm2/demoicon.gif, + doc_m/template_issm/template_issm2/down.png, + doc_m/template_issm/template_issm2/fortran.png, + doc_m/template_issm/template_issm2/graph.tpl, + doc_m/template_issm/template_issm2/headerissm.png, + doc_m/template_issm/template_issm2/hp.png, + doc_m/template_issm/template_issm2/left.png, + doc_m/template_issm/template_issm2/linux.png, + doc_m/template_issm/template_issm2/logo_JPL.png, + doc_m/template_issm/template_issm2/logo_NASA.png, + doc_m/template_issm/template_issm2/m2html.css, + doc_m/template_issm/template_issm2/master.tpl, + doc_m/template_issm/template_issm2/matlabicon.gif, + doc_m/template_issm/template_issm2/mdir.tpl, + doc_m/template_issm/template_issm2/mex.png, + doc_m/template_issm/template_issm2/mfile.tpl, + doc_m/template_issm/template_issm2/right.png, + doc_m/template_issm/template_issm2/sgi.png, + doc_m/template_issm/template_issm2/simulinkicon.gif, + doc_m/template_issm/template_issm2/solaris.png, + doc_m/template_issm/template_issm2/todo.tpl, + doc_m/template_issm/template_issm2/up.png, + doc_m/template_issm/template_issm2/windows.png: Added website + +2009-04-03 17:18 morlighe + + * doc/developperguide.pdf: no more developerguide + +2009-04-03 17:10 morlighe + + * scripts/: archive.sh, createlinks.sh, eraselinks.sh, + quickinstall.sh: Added some files + +2009-04-03 17:08 morlighe + + * doc/index.html: Better documentation setup + +2009-04-03 17:07 morlighe + + * doc/MakefileIce: Missing doc target + +2009-04-03 17:05 morlighe + + * cron/linux_cronfile: New locations for cron jobs + +2009-04-03 17:04 morlighe + + * etc/cielo.rc: New cielo.rc settings. + +2009-04-03 17:04 morlighe + + * packages/list: Useless + +2009-04-03 17:01 morlighe + + * MakefileIce, bin/MakefileIce, bin/cvs_empty_file: Added bin clean + target + +2009-04-03 16:59 morlighe + + * src/mex/MeshPartition/MeshPartition.c: Switched to x code + framework + +2009-04-03 16:56 morlighe + + * src/c/MeshPartitionx/: MeshPartition.h, MeshPartitionx.c, + MeshPartitionx.h: MeshPartitionx: completed the x framework. + Some left over from Cielo. + +2009-04-03 16:54 morlighe + + * src/c/: ArgusContourToMeshx/MakefileIce, HoleFillerx/MakefileIce, + IceDataInterpx/MakefileIce, MeshPartitionx/MakefileIce, + Visux/MakefileIce: Fixed Bug + +2009-04-03 16:51 morlighe + + * ChangeLogIce: change log for Ice + +2009-04-03 16:49 morlighe + + * src/mex/ArgusContourToMesh/ArgusContourToMesh.c: reorg + +2009-04-03 16:45 morlighe + + * etc/environment.sh, etc/environment_variables, + src/c/ArgusContourToMeshx/ArgusContourToMeshx.c, + src/c/ArgusContourToMeshx/Contour.c, + src/c/ArgusContourToMeshx/Contour.h: reorg + +2009-04-03 16:44 morlighe + + * INSTALL, INSTALLICE: moved INSTALL to INSTALLICE + +2009-04-03 16:43 morlighe + + * README, READMEICE: moved REDME to READMEICE + +2009-04-03 16:42 morlighe + + * src/c/ArgusContourToMeshx/: ArgusContourToMesh.h, + ArgusContourToMeshx.h: reorg + +2009-04-03 16:40 morlighe + + * doc/Makefile, src/c/ArgusContourToMeshx/Makefile, + src/c/HoleFillerx/Makefile, src/c/IceDataInterpx/Makefile, + src/c/MeshPartitionx/Makefile, src/c/Visux/Makefile, + src/c/shared/TriMesh/Makefile: not needed anymore, automatically + generated by autoconf + +2009-04-03 16:36 morlighe + + * examples/Bumps/Bump1_surface_bed/DomainOutline.exp, + examples/Bumps/Bump1_surface_bed/Front.exp, + examples/Bumps/Bump1_surface_bed/Square.par, + examples/Bumps/Bump1_surface_bed/runme.m, + examples/Bumps/Bump2_bed/DomainOutline.exp, + examples/Bumps/Bump2_bed/Front.exp, + examples/Bumps/Bump2_bed/Square.par, + examples/Bumps/Bump2_bed/runme.m, + examples/SquareIceShelf/DomainOutline.exp, + examples/SquareIceShelf/Front.exp, + examples/SquareIceShelf/README, + examples/SquareIceShelf/Shelf.exp, + examples/SquareIceShelf/Square.par, + examples/SquareIceShelf/square.model, + test/Validation/MacAyealVsPattyn/test1_iceshelf/DomainOutline.exp, + test/Validation/MacAyealVsPattyn/test1_iceshelf/Front.exp, + test/Validation/MacAyealVsPattyn/test1_iceshelf/Pattyn.exp, + test/Validation/MacAyealVsPattyn/test1_iceshelf/Shelf.exp, + test/Validation/MacAyealVsPattyn/test1_iceshelf/Square.par, + test/Validation/MacAyealVsPattyn/test1_iceshelf/runme.m, + test/Validation/MacAyealVsPattyn/test2_icesheet/DomainOutline.exp, + test/Validation/MacAyealVsPattyn/test2_icesheet/Front.exp, + test/Validation/MacAyealVsPattyn/test2_icesheet/Pattyn.exp, + test/Validation/MacAyealVsPattyn/test2_icesheet/Square.par, + test/Validation/MacAyealVsPattyn/test2_icesheet/runme.m, + test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/DomainOutline.exp, + test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/Front.exp, + test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/Pattyn.exp, + test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/Shelf.exp, + test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/Square.par, + test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/runme.m, + test/Validation/PattynStokes/test1_iceshelf/DomainOutline.exp, + test/Validation/PattynStokes/test1_iceshelf/Front.exp, + test/Validation/PattynStokes/test1_iceshelf/Shelf.exp, + test/Validation/PattynStokes/test1_iceshelf/Square.par, + test/Validation/PattynStokes/test1_iceshelf/runme.m, + test/Validation/PattynStokes/test2_icesheet/DomainOutline.exp, + test/Validation/PattynStokes/test2_icesheet/Front.exp, + test/Validation/PattynStokes/test2_icesheet/Square.par, + test/Validation/PattynStokes/test2_icesheet/runme.m, + test/Validation/PattynStokes/test3_icesheet_iceshelf/DomainOutline.exp, + test/Validation/PattynStokes/test3_icesheet_iceshelf/Front.exp, + test/Validation/PattynStokes/test3_icesheet_iceshelf/Shelf.exp, + test/Validation/PattynStokes/test3_icesheet_iceshelf/Square.par, + test/Validation/PattynStokes/test3_icesheet_iceshelf/runme.m, + test/Validation/RoundIceSheet/Circ.par, + test/Validation/RoundIceSheet/CreateDomainOutline.m, + test/Validation/RoundIceSheet/README, + test/Validation/RoundIceSheet/runme.m, + test/Validation/ThermalTests/Melting/DomainOutline.exp, + test/Validation/ThermalTests/Melting/Front.exp, + test/Validation/ThermalTests/Melting/Square.par, + test/Validation/ThermalTests/Melting/runme.m, + test/Validation/ThermalTests/Melting/thermalboundarycondition.m, + test/Validation/ThermalTests/Simpleadvection/DomainOutline.exp, + test/Validation/ThermalTests/Simpleadvection/Front.exp, + test/Validation/ThermalTests/Simpleadvection/Square.par, + test/Validation/ThermalTests/Simpleadvection/runme.m, + test/Validation/ThermalTests/Simpleadvection/thermalboundarycondition.m, + test/Validation/ThermalTests/Simpleconduction/DomainOutline.exp, + test/Validation/ThermalTests/Simpleconduction/Front.exp, + test/Validation/ThermalTests/Simpleconduction/Shelf.exp, + test/Validation/ThermalTests/Simpleconduction/Square.par, + test/Validation/ThermalTests/Simpleconduction/runme.m, + test/Validation/ThermalTests/Simpleconduction/thermalboundarycondition.m, + test/Validation/ThermalTests/Simplegeothermalflux/DomainOutline.exp, + test/Validation/ThermalTests/Simplegeothermalflux/Front.exp, + test/Validation/ThermalTests/Simplegeothermalflux/Square.par, + test/Validation/ThermalTests/Simplegeothermalflux/runme.m, + test/Validation/ThermalTests/Simplegeothermalflux/thermalboundarycondition.m, + test/Verification/test10_iceshelf_icefront_stokes/DomainOutline.exp, + test/Verification/test10_iceshelf_icefront_stokes/Front.exp, + test/Verification/test10_iceshelf_icefront_stokes/Square.par, + test/Verification/test10_iceshelf_icefront_stokes/archive_melting.mat, + test/Verification/test10_iceshelf_icefront_stokes/archive_stokes.mat, + test/Verification/test10_iceshelf_icefront_stokes/archive_temperature.mat, + test/Verification/test10_iceshelf_icefront_stokes/runme.m, + test/Verification/test10_iceshelf_icefront_stokes/updatearchive.m, + test/Verification/test11_penalties_iceshelf_allmodels/DomainOutline.exp, + test/Verification/test11_penalties_iceshelf_allmodels/Front.exp, + test/Verification/test11_penalties_iceshelf_allmodels/Pattyn.exp, + test/Verification/test11_penalties_iceshelf_allmodels/Square.par, + test/Verification/test11_penalties_iceshelf_allmodels/Stokes.exp, + test/Verification/test11_penalties_iceshelf_allmodels/archive_melting.mat, + test/Verification/test11_penalties_iceshelf_allmodels/archive_temperature.mat, + test/Verification/test11_penalties_iceshelf_allmodels/archive_velocity.mat, + test/Verification/test11_penalties_iceshelf_allmodels/runme.m, + test/Verification/test11_penalties_iceshelf_allmodels/updatearchive.m, + test/Verification/test1_icesheet_noicefront/DomainOutline.exp, + test/Verification/test1_icesheet_noicefront/Front.exp, + test/Verification/test1_icesheet_noicefront/Square.par, + test/Verification/test1_icesheet_noicefront/archive_acc.mat, + test/Verification/test1_icesheet_noicefront/archive_hutter.mat, + test/Verification/test1_icesheet_noicefront/archive_ice.mat, + test/Verification/test1_icesheet_noicefront/archive_macayeal.mat, + test/Verification/test1_icesheet_noicefront/runme.m, + test/Verification/test1_icesheet_noicefront/updatearchive.m, + test/Verification/test2_icesheet_icefront/DomainOutline.exp, + test/Verification/test2_icesheet_icefront/Front.exp, + test/Verification/test2_icesheet_icefront/Hutter.exp, + test/Verification/test2_icesheet_icefront/Square.par, + test/Verification/test2_icesheet_icefront/archive_acc.mat, + test/Verification/test2_icesheet_icefront/archive_hutter.mat, + test/Verification/test2_icesheet_icefront/archive_ice.mat, + test/Verification/test2_icesheet_icefront/archive_macayeal.mat, + test/Verification/test2_icesheet_icefront/archive_thickness.mat, + test/Verification/test2_icesheet_icefront/runme.m, + test/Verification/test2_icesheet_icefront/updatearchive.m, + test/Verification/test3_iceshelf_icefront/DomainOutline.exp, + test/Verification/test3_iceshelf_icefront/Front.exp, + test/Verification/test3_iceshelf_icefront/Square.par, + test/Verification/test3_iceshelf_icefront/archive_acc.mat, + test/Verification/test3_iceshelf_icefront/archive_ice.mat, + test/Verification/test3_iceshelf_icefront/archive_macayeal.mat, + test/Verification/test3_iceshelf_icefront/archive_thickness.mat, + test/Verification/test3_iceshelf_icefront/runme.m, + test/Verification/test3_iceshelf_icefront/updatearchive.m, + test/Verification/test4_icesheet_noicefront_3d/DomainOutline.exp, + test/Verification/test4_icesheet_noicefront_3d/Front.exp, + test/Verification/test4_icesheet_noicefront_3d/Square.par, + test/Verification/test4_icesheet_noicefront_3d/archive_hutter.mat, + test/Verification/test4_icesheet_noicefront_3d/archive_melting.mat, + test/Verification/test4_icesheet_noicefront_3d/archive_pattyn.mat, + test/Verification/test4_icesheet_noicefront_3d/archive_temperature.mat, + test/Verification/test4_icesheet_noicefront_3d/runme.m, + test/Verification/test4_icesheet_noicefront_3d/updatearchive.m, + test/Verification/test5_icesheet_icefront_3d/DomainOutline.exp, + test/Verification/test5_icesheet_icefront_3d/Front.exp, + test/Verification/test5_icesheet_icefront_3d/Square.par, + test/Verification/test5_icesheet_icefront_3d/archive_melting.mat, + test/Verification/test5_icesheet_icefront_3d/archive_melting_transient.mat, + test/Verification/test5_icesheet_icefront_3d/archive_pattyn.mat, + test/Verification/test5_icesheet_icefront_3d/archive_temperature.mat, + test/Verification/test5_icesheet_icefront_3d/archive_temperature_transient.mat, + test/Verification/test5_icesheet_icefront_3d/archive_thickness.mat, + test/Verification/test5_icesheet_icefront_3d/runme.m, + test/Verification/test5_icesheet_icefront_3d/updatearchive.m, + test/Verification/test6_iceshelf_icefront_3d/DomainOutline.exp, + test/Verification/test6_iceshelf_icefront_3d/Front.exp, + test/Verification/test6_iceshelf_icefront_3d/Square.par, + test/Verification/test6_iceshelf_icefront_3d/archive_melting.mat, + test/Verification/test6_iceshelf_icefront_3d/archive_melting_transient.mat, + test/Verification/test6_iceshelf_icefront_3d/archive_pattyn.mat, + test/Verification/test6_iceshelf_icefront_3d/archive_temperature.mat, + test/Verification/test6_iceshelf_icefront_3d/archive_temperature_transient.mat, + test/Verification/test6_iceshelf_icefront_3d/archive_thickness.mat, + test/Verification/test6_iceshelf_icefront_3d/runme.m, + test/Verification/test6_iceshelf_icefront_3d/updatearchive.m, + test/Verification/test7_penalties_iceshelf_3d/DomainOutline.exp, + test/Verification/test7_penalties_iceshelf_3d/Front.exp, + test/Verification/test7_penalties_iceshelf_3d/Pattyn.exp, + test/Verification/test7_penalties_iceshelf_3d/Square.par, + test/Verification/test7_penalties_iceshelf_3d/archive_melting.mat, + test/Verification/test7_penalties_iceshelf_3d/archive_temperature.mat, + test/Verification/test7_penalties_iceshelf_3d/archive_velocity.mat, + test/Verification/test7_penalties_iceshelf_3d/iceshelf.exp, + test/Verification/test7_penalties_iceshelf_3d/runme.m, + test/Verification/test7_penalties_iceshelf_3d/updatearchive.m, + test/Verification/test8_icesheet_noicefront_stokes/DomainOutline.exp, + test/Verification/test8_icesheet_noicefront_stokes/Front.exp, + test/Verification/test8_icesheet_noicefront_stokes/Square.par, + test/Verification/test8_icesheet_noicefront_stokes/archive_melting.mat, + test/Verification/test8_icesheet_noicefront_stokes/archive_stokes.mat, + test/Verification/test8_icesheet_noicefront_stokes/archive_temperature.mat, + test/Verification/test8_icesheet_noicefront_stokes/runme.m, + test/Verification/test8_icesheet_noicefront_stokes/updatearchive.m, + test/Verification/test9_icesheet_icefront_stokes/DomainOutline.exp, + test/Verification/test9_icesheet_icefront_stokes/Front.exp, + test/Verification/test9_icesheet_icefront_stokes/Square.par, + test/Verification/test9_icesheet_icefront_stokes/archive_melting.mat, + test/Verification/test9_icesheet_icefront_stokes/archive_stokes.mat, + test/Verification/test9_icesheet_icefront_stokes/archive_temperature.mat, + test/Verification/test9_icesheet_icefront_stokes/runme.m, + test/Verification/test9_icesheet_icefront_stokes/updatearchive.m, + test/Verification/test_cielo/DomainOutline.exp, + test/Verification/test_cielo/DomainOutlineRifts.exp, + test/Verification/test_cielo/Front.exp, + test/Verification/test_cielo/IceShelf.exp, + test/Verification/test_cielo/Pattyn.exp, + test/Verification/test_cielo/Rifts.exp, + test/Verification/test_cielo/Square.par, + test/Verification/test_cielo/control.mat, + test/Verification/test_cielo/diagnostic_horiz_macayeal.mat, + test/Verification/test_cielo/diagnostic_horiz_mixed.mat, + test/Verification/test_cielo/diagnostic_horiz_pattyn.mat, + test/Verification/test_cielo/diagnostic_horiz_rifts.mat, + test/Verification/test_cielo/runme.m, + test/Verification/test_cielo/thermalsteady.mat: Moved tests to + test and examples + +2009-04-03 16:27 morlighe + + * packages/: Makefile, README, list, dakota/Dakota_4_2.src.tar.gz, + dakota/install.sh, doxygen/doxygen-1.5.8.src.tar.gz, + doxygen/install.sh, gdal/GDALmake.opt.patch, + gdal/gdal-1.6.0.tar.gz, gdal/install.sh, m2html/install.sh, + m2html/m2html.m.patch, m2html/m2html.zip, + metis/Makefile.in.patch, metis/install.sh, + metis/metis-4.0.tar.gz, mpich2/Examples.Makefile.patch, + mpich2/install.sh, mpich2/mpich2-1.0.2p1.tar.gz, mtoc/install.sh, + mtoc/mtoc.tgz, petsc/install.sh, petsc/petsc-2.3.2-p3.tar.gz, + qhull/install.sh, qhull/qhull-2003.1.tar.gz, slepc/install.sh, + slepc/slepc-2.3.2.tgz, sowing/install.sh, sowing/sowing.tar.gz, + suitesparse/SuiteSparse-3.2.0.tar.gz, + suitesparse/SuiteSparse_install.patch, suitesparse/install.sh, + triangle/install.sh, triangle/makefile, + triangle/triangle.c.patch, triangle/triangle.zip: moved libs to + packages + +2009-04-03 16:21 morlighe + + * contributors.txt: blabla + +2009-04-03 16:10 morlighe + + * src/m/classes/: @pentaelem/CreateKMatrix.mexa64, + @pentaelem/CreatePVector.mexa64, @triaelem/CreateKMatrix.mexa64: + Not needed + +2009-04-03 16:08 morlighe + + * bin/cvs_empty_file: empty file needed + +2009-04-03 16:05 morlighe + + * cron/nightlyrun.sh, doc/issmdoc.m, etc/Make_default_rules.mk, + etc/config_linux64.mk, startup.m, bin/startup.m: reorg + +2009-04-03 16:01 morlighe + + * Makefile.issm: gone + +2009-04-03 16:00 morlighe + + * src/m/shared/: GaussPenta.m, GaussQuad.m, GaussSegment.m, + GaussTetra.m, GaussTria.m, Getalpha2.m, Solver.m, hutterenum.m, + macayealenum.m, noneenum.m, pattynenum.m, recover_input.m, + stokesenum.m: reorg + +2009-04-03 15:55 morlighe + + * src/m/: classes/@acceleratedtriaelem/CreateKMatrix.m, + classes/@acceleratedtriaelem/CreatePVector.m, + classes/@acceleratedtriaelem/acceleratedtriaelem.m, + classes/@acceleratedtriaelem/display.m, + classes/@acceleratedtriaelem/subsasgn.m, + classes/@acceleratedtriaelem/subsref.m, + classes/@beamelem/CreateKMatrix.m, + classes/@beamelem/CreatePVector.m, + classes/@beamelem/GetJacobian.m, + classes/@beamelem/GetJacobianDeterminant.m, + classes/@beamelem/GetJacobianInvert.m, + classes/@beamelem/GetNodalFunctions.m, + classes/@beamelem/GetNodalFunctionsDerivativesBasic.m, + classes/@beamelem/GetNodalFunctionsDerivativesParams.m, + classes/@beamelem/GetParameterValue.m, + classes/@beamelem/beamelem.m, classes/@beamelem/display.m, + classes/@beamelem/getgriddata.m, classes/@beamelem/subsasgn.m, + classes/@beamelem/subsref.m, + classes/@continuous_design/continuous_design.m, + classes/@continuous_design/display.m, + classes/@continuous_state/continuous_state.m, + classes/@continuous_state/display.m, + classes/@elemmatrix/AddElemMatrix.m, + classes/@elemmatrix/display.m, classes/@elemmatrix/elemmatrix.m, + classes/@elemmatrix/subsasgn.m, classes/@elemmatrix/subsref.m, + classes/@elemvector/AddElemVector.m, + classes/@elemvector/display.m, classes/@elemvector/elemvector.m, + classes/@elemvector/subsasgn.m, classes/@elemvector/subsref.m, + classes/@globalmatrix/AddElemMatrix.m, + classes/@globalmatrix/display.m, + classes/@globalmatrix/globalmatrix.m, + classes/@globalmatrix/subsasgn.m, + classes/@globalmatrix/subsref.m, + classes/@globalvector/AddElemVector.m, + classes/@globalvector/display.m, + classes/@globalvector/globalvector.m, + classes/@globalvector/subsasgn.m, + classes/@globalvector/subsref.m, + classes/@icefront/CreatePVector.m, + classes/@icefront/PenaltyConstrain.m, + classes/@icefront/PenaltyCreateKMatrix.m, + classes/@icefront/PenaltyCreatePVector.m, + classes/@icefront/display.m, classes/@icefront/icefront.m, + classes/@icefront/subsasgn.m, classes/@icefront/subsref.m, + classes/@least_squares_term/display.m, + classes/@least_squares_term/least_squares_term.m, + classes/@matice/GetViscosity2.m, + classes/@matice/GetViscosity2d.m, + classes/@matice/GetViscosity3d.m, classes/@matice/display.m, + classes/@matice/matice.m, classes/@matice/subsasgn.m, + classes/@matice/subsref.m, classes/@matpar/display.m, + classes/@matpar/matpar.m, classes/@matpar/subsasgn.m, + classes/@matpar/subsref.m, classes/@model/activaterepository.m, + classes/@model/deletemodel.m, classes/@model/display.m, + classes/@model/fieldcount.m, classes/@model/get.m, + classes/@model/model.m, classes/@model/set.m, + classes/@model/structtomodel.m, classes/@model/subsasgn.m, + classes/@model/subsref.m, classes/@node/display.m, + classes/@node/node.m, classes/@node/subsasgn.m, + classes/@node/subsref.m, + classes/@nonlinear_equality_constraint/display.m, + classes/@nonlinear_equality_constraint/nonlinear_equality_constraint.m, + classes/@nonlinear_inequality_constraint/display.m, + classes/@nonlinear_inequality_constraint/nonlinear_inequality_constraint.m, + classes/@normal_uncertain/display.m, + classes/@normal_uncertain/normal_uncertain.m, + classes/@objective_function/display.m, + classes/@objective_function/objective_function.m, + classes/@pengrid/CreatePVector.m, + classes/@pengrid/PenaltyConstrain.m, + classes/@pengrid/PenaltyCreateKMatrix.m, + classes/@pengrid/PenaltyCreatePVector.m, + classes/@pengrid/display.m, classes/@pengrid/pengrid.m, + classes/@pengrid/subsasgn.m, classes/@pengrid/subsref.m, + classes/@penpair/CreatePVector.m, + classes/@penpair/PenaltyConstrain.m, + classes/@penpair/PenaltyCreateKMatrix.m, + classes/@penpair/PenaltyCreatePVector.m, + classes/@penpair/display.m, classes/@penpair/penpair.m, + classes/@penpair/subsasgn.m, classes/@penpair/subsref.m, + classes/@pentaelem/CreateKMatrix.m, + classes/@pentaelem/CreateKMatrix.mexa64, + classes/@pentaelem/CreatePVector.m, + classes/@pentaelem/CreatePVector.mexa64, + classes/@pentaelem/DeviatoricStress.m, + classes/@pentaelem/GetBStokes.m, classes/@pentaelem/GetB_advec.m, + classes/@pentaelem/GetB_conduct.m, + classes/@pentaelem/GetB_horiz.m, classes/@pentaelem/GetB_vert.m, + classes/@pentaelem/GetBprimeStokes.m, + classes/@pentaelem/GetBprime_advec.m, + classes/@pentaelem/GetBprime_horiz.m, + classes/@pentaelem/GetBprime_vert.m, + classes/@pentaelem/GetJacobian.m, + classes/@pentaelem/GetJacobianDeterminant.m, + classes/@pentaelem/GetJacobianInvert.m, + classes/@pentaelem/GetNodalFunctions.m, + classes/@pentaelem/GetNodalFunctionsBubbleStokes.m, + classes/@pentaelem/GetNodalFunctionsDerivativesBasic.m, + classes/@pentaelem/GetNodalFunctionsDerivativesBasicStokes.m, + classes/@pentaelem/GetNodalFunctionsDerivativesParams.m, + classes/@pentaelem/GetNodalFunctionsDerivativesParamsStokes.m, + classes/@pentaelem/GetNodalFunctionsStokes.m, + classes/@pentaelem/GetParameterDerivativeValue.m, + classes/@pentaelem/GetParameterValue.m, + classes/@pentaelem/GetParameterValueStokes.m, + classes/@pentaelem/GetStrainRate.m, + classes/@pentaelem/GetStrainRateStokes.m, + classes/@pentaelem/PentaCollapseIntoTriaMatrix.m, + classes/@pentaelem/PentaCollapseIntoTriaVector.m, + classes/@pentaelem/ReduceMatrixStokes.m, + classes/@pentaelem/ReduceVectorStokes.m, + classes/@pentaelem/StrainRate.m, classes/@pentaelem/Stress.m, + classes/@pentaelem/StressBed.m, + classes/@pentaelem/StressSurface.m, + classes/@pentaelem/ViscousHeating.m, + classes/@pentaelem/display.m, classes/@pentaelem/getgriddata.m, + classes/@pentaelem/pentaelem.m, classes/@pentaelem/subsasgn.m, + classes/@pentaelem/subsref.m, + classes/@response_function/display.m, + classes/@response_function/response_function.m, + classes/@rgb/display.m, classes/@rgb/rgb.m, + classes/@rgb/subsasgn.m, classes/@rgb/subsref.m, + classes/@singelem/CreateKMatrix.m, + classes/@singelem/CreatePVector.m, classes/@singelem/display.m, + classes/@singelem/singelem.m, classes/@singelem/subsasgn.m, + classes/@singelem/subsref.m, classes/@spc/display.m, + classes/@spc/spc.m, classes/@spc/subsasgn.m, + classes/@spc/subsref.m, classes/@tetraelem/GetJacobian.m, + classes/@tetraelem/GetJacobianDeterminant.m, + classes/@triaelem/CreateKMatrix.m, + classes/@triaelem/CreateKMatrix.mexa64, + classes/@triaelem/CreatePVector.m, + classes/@triaelem/DeviatoricStress.m, classes/@triaelem/GetB.m, + classes/@triaelem/GetB_prog.m, classes/@triaelem/GetBprime.m, + classes/@triaelem/GetBprime_prog.m, + classes/@triaelem/GetJacobian.m, + classes/@triaelem/GetJacobianDeterminant.m, + classes/@triaelem/GetJacobianInvert.m, classes/@triaelem/GetL.m, + classes/@triaelem/GetLStokes.m, + classes/@triaelem/GetLprimeStokes.m, + classes/@triaelem/GetNodalFunctions.m, + classes/@triaelem/GetNodalFunctionsDerivativesBasic.m, + classes/@triaelem/GetNodalFunctionsDerivativesParams.m, + classes/@triaelem/GetParameterDerivativeValue.m, + classes/@triaelem/GetParameterValue.m, + classes/@triaelem/GetStrainRate.m, + classes/@triaelem/StrainRate.m, classes/@triaelem/Stress.m, + classes/@triaelem/ViscousHeating.m, classes/@triaelem/display.m, + classes/@triaelem/getgriddata.m, classes/@triaelem/subsasgn.m, + classes/@triaelem/subsref.m, classes/@triaelem/triaelem.m, + classes/public/BuildQueueingScript.m, + classes/public/BuildQueueingScriptGeneric.m, + classes/public/BuildQueueingScriptcosmos.m, + classes/public/BuildQueueingScriptgemini.m, + classes/public/DepthAverage.m, classes/public/LaunchQueueJob.m, + classes/public/LaunchQueueJobGeneric.m, + classes/public/LaunchQueueJobcosmos.m, + classes/public/LaunchQueueJobgemini.m, + classes/public/QueueJobPeek.m, + classes/public/QueueJobPeekGeneric.m, classes/public/README, + classes/public/ReadData.m, classes/public/SectionValues.m, + classes/public/ThicknessCorrection.m, classes/public/WriteData.m, + classes/public/addnote.m, classes/public/area.m, + classes/public/averageconnectivity.m, classes/public/averaging.m, + classes/public/balvel.m, classes/public/basalstress.m, + classes/public/basevert.m, classes/public/buildoverlay.m, + classes/public/buildoverlaycolorbar.m, classes/public/collapse.m, + classes/public/deepcopy.m, classes/public/displaybc.m, + classes/public/displaycontrol.m, classes/public/displayexppar.m, + classes/public/displaymaterials.m, classes/public/displaymesh.m, + classes/public/displayobservations.m, + classes/public/displayparallel.m, + classes/public/displayparameters.m, classes/public/displayqmu.m, + classes/public/displayresults.m, + classes/public/displaysolutionparameters.m, + classes/public/domaintomesh.m, classes/public/drivingstress.m, + classes/public/export.m, classes/public/extrude.m, + classes/public/fieldcount.m, classes/public/geography.m, + classes/public/ismodelselfconsistent.m, + classes/public/isresultconsistent.m, + classes/public/loadresultsfromcluster.m, + classes/public/loadresultsfromdisk.m, classes/public/marshall.m, + classes/public/mesh.m, classes/public/mesh2.m, + classes/public/meshadaptation.m, classes/public/meshexprefine.m, + classes/public/meshprocessrifts.m, classes/public/meshrefine.m, + classes/public/model2ocmodel.m, classes/public/modelextract.m, + classes/public/modelzoom.m, classes/public/parameterize.m, + classes/public/parseresultsfromdisk.m, classes/public/peek.m, + classes/public/plug.m, classes/public/preparerun.m, + classes/public/printmodel.m, classes/public/project2d.m, + classes/public/project3d.m, classes/public/radarpower.m, + classes/public/recover_areas.m, classes/public/removeholes.m, + classes/public/rifttipsrefine.m, + classes/public/setelementstype.m, classes/public/shear2d.m, + classes/public/shearnorm2d.m, classes/public/slope.m, + classes/public/solve.m, classes/public/solveparallel.m, + classes/public/solversettoasm.m, + classes/public/solversettomumps.m, + classes/public/solversettosor.m, classes/public/structtomodel.m, + classes/public/thicknessevolution.m, classes/public/todo, + classes/public/waitonlock.m, classes/public/plot/applyoptions.m, + classes/public/plot/imagescnan.m, + classes/public/plot/latlonoverlay.m, + classes/public/plot/northarrow.m, + classes/public/plot/parse_options.m, + classes/public/plot/plot_basaldrag.m, + classes/public/plot/plot_boundaries.m, + classes/public/plot/plot_contour.m, + classes/public/plot/plot_drivingstress.m, + classes/public/plot/plot_elementnumbering.m, + classes/public/plot/plot_elementstype.m, + classes/public/plot/plot_gridnumbering.m, + classes/public/plot/plot_highlightelements.m, + classes/public/plot/plot_highlightgrids.m, + classes/public/plot/plot_importancefactors.m, + classes/public/plot/plot_mesh.m, + classes/public/plot/plot_overlay.m, + classes/public/plot/plot_penalties.m, + classes/public/plot/plot_quiver.m, + classes/public/plot/plot_quiver3.m, + classes/public/plot/plot_quivervel.m, + classes/public/plot/plot_riftpenetration.m, + classes/public/plot/plot_riftrelvel.m, + classes/public/plot/plot_riftvel.m, + classes/public/plot/plot_sarpwr.m, + classes/public/plot/plot_section.m, + classes/public/plot/plot_segmentnumbering.m, + classes/public/plot/plot_segmentonneumann.m, + classes/public/plot/plot_tensor.m, + classes/public/plot/plot_tensor_components.m, + classes/public/plot/plot_tensor_principal.m, + classes/public/plot/plot_tensor_principalaxis.m, + classes/public/plot/plot_thermaltransient_results.m, + classes/public/plot/plot_transient_movie.m, + classes/public/plot/plot_transient_results.m, + classes/public/plot/plot_unit.m, + classes/public/plot/plotanalyse.m, classes/public/plot/plotdoc.m, + classes/public/plot/plotmodel.m, + classes/public/plot/processdata.m, + classes/public/plot/processmesh.m, + classes/public/plot/recover_plot_options.m, + classes/public/plot/scaleruler.m, classes/public/plot/undoplot.m, + solutions/ice/BuildGridSets.m, solutions/ice/CreateFemModel.m, + solutions/ice/DeviatoricStressCompute.m, + solutions/ice/DiagnosticSolutionType.m, solutions/ice/Dof.m, + solutions/ice/GetNumberOfActiveElements.m, + solutions/ice/HorizontalVelocityDepthAverage.m, + solutions/ice/IceNormalizeconstraints.m, + solutions/ice/IcePenaltyConstraints.m, + solutions/ice/IceReducematrix.m, + solutions/ice/IceReducematrixfromgtof.m, + solutions/ice/IceReducerightside.m, solutions/ice/Loadresults.m, + solutions/ice/Mergesolution_g.m, solutions/ice/ModelProcessor.m, + solutions/ice/ModelProcessorDiagnosticBaseVert.m, + solutions/ice/ModelProcessorDiagnosticHoriz.m, + solutions/ice/ModelProcessorDiagnosticHutter.m, + solutions/ice/ModelProcessorDiagnosticStokes.m, + solutions/ice/ModelProcessorDiagnosticVert.m, + solutions/ice/ModelProcessorMelting.m, + solutions/ice/ModelProcessorPrognostic.m, + solutions/ice/ModelProcessorSlopeCompute.m, + solutions/ice/ModelProcessorThermal.m, solutions/ice/MpcGrids.m, + solutions/ice/PartitioningVector.m, + solutions/ice/PenaltySystemMatrices.m, + solutions/ice/PressureElemCompute.m, + solutions/ice/Reducevector_g.m, + solutions/ice/SetStructureField.m, solutions/ice/SetupParams.m, + solutions/ice/ShiftLayers.m, solutions/ice/SpcGrids.m, + solutions/ice/StrainRateCompute.m, + solutions/ice/StressBedCompute.m, solutions/ice/StressCompute.m, + solutions/ice/StressSurfaceCompute.m, + solutions/ice/SystemMatrices.m, solutions/ice/TimeStepping.m, + solutions/ice/UpdateGeometry.m, + solutions/ice/UpdateGridPosition.m, solutions/ice/UpdateMesh.m, + solutions/ice/VelocityExtrude.m, + solutions/ice/ViscousHeatingCompute.m, solutions/ice/debug.m, + solutions/ice/debug2.m, solutions/ice/getdofcount.m, + solutions/ice/huttercompute.m, solutions/ice/icediagnostic.m, + solutions/ice/icediagnostic2d.m, solutions/ice/icediagnostic3d.m, + solutions/ice/icediagnostic_core_linear.m, + solutions/ice/icediagnostic_core_nonlinear.m, + solutions/ice/icediagnostic_wrapper.m, solutions/ice/iceglobal.m, + solutions/ice/icemelting_core.m, solutions/ice/iceparameters.m, + solutions/ice/iceparameters_wrapper.m, + solutions/ice/iceprognostic.m, + solutions/ice/iceprognostic_core.m, + solutions/ice/iceprognostic_wrapper.m, + solutions/ice/icethermal.m, solutions/ice/icethermal_core.m, + solutions/ice/icethermal_wrapper.m, solutions/ice/icetransient.m, + solutions/ice/icetransient2d.m, solutions/ice/icetransient3d.m, + solutions/ice/icetransient_wrapper.m, + solutions/ice/slopecompute.m, solutions/macayeal/bar_maker.m, + solutions/macayeal/buildicefrontnormal.m, + solutions/macayeal/c_velfinder.m, + solutions/macayeal/create_el2nod_matrices.m, + solutions/macayeal/flowlaw.m, solutions/macayeal/grad_J_flow.m, + solutions/macayeal/macayealcontrol.m, + solutions/macayeal/macayealdiagnostic.m, + solutions/macayeal/objectivefunction_C_flow.m, + solutions/macayeal/setup_control.m, solutions/macayeal/shape.m, + solutions/macayeal/shear.m, solutions/macayeal/stress.m, + solutions/macayeal/visc_grad.m, solutions/macayeal/viscosity.m, + utils/genpath_ice.m, utils/Antarctica/README, + utils/Antarctica/antcreatewrappedmap.m, + utils/Antarctica/antimread.m, + utils/Antarctica/antlatlonoverlay.m, utils/Antarctica/antmovie.m, + utils/Antarctica/antoutline.m, utils/Antarctica/antoverlay.m, + utils/Antarctica/antoverlay2.m, utils/Antarctica/antscale.m, + utils/Antarctica/antzoom.m, utils/Array/allempty.m, + utils/Array/allnan.m, utils/Array/string_dim.m, + utils/Array/string_vec.m, utils/Cluster/clusterreq.m, + utils/Computation/runtime.m, + utils/Computation/sparsity_compute.m, + utils/Cracks/contour_icefront.m, utils/Cracks/contour_maker.m, + utils/Cracks/exist_by_names.m, utils/Cracks/find_around.m, + utils/Cracks/find_coord.m, utils/Cracks/find_coord_matrix.m, + utils/Cracks/find_line.m, utils/Cracks/icefront_maker.m, + utils/Cracks/index_builder.m, utils/Cracks/index_builder2.m, + utils/Cracks/locate.m, utils/Cracks/margin_locator.m, + utils/Cracks/mesh_creator_2d.m, utils/Cracks/meshdensitygen.m, + utils/Cracks/names_function.m, utils/Cracks/perim_curve.m, + utils/Cracks/void_fill.m, utils/Cracks/void_fill1d.m, + utils/Cracks/void_fill_noxy.m, utils/DataProcessing/addtrack.m, + utils/DataProcessing/data_processing_tool.fig, + utils/DataProcessing/data_processing_tool.m, utils/Err/erfn.m, + utils/Err/erfp.m, utils/Exp/expboxgen.m, + utils/Exp/expconcatenate.m, utils/Exp/expcreatecircle.m, + utils/Exp/expcreatecontour.m, utils/Exp/expcreateprofile.m, + utils/Exp/expcut.m, utils/Exp/expdisp.m, utils/Exp/expdoc.m, + utils/Exp/expgen.m, utils/Exp/explink.m, utils/Exp/expmaster.m, + utils/Exp/expselect.m, utils/Exp/ginputquick.m, + utils/Exp/zinput.m, utils/Exp/manipulation/addendprofile.m, + utils/Exp/manipulation/addinsideprofile.m, + utils/Exp/manipulation/addprofile.m, + utils/Exp/manipulation/closeprofile.m, + utils/Exp/manipulation/closestpoint.m, + utils/Exp/manipulation/closestsegment.m, + utils/Exp/manipulation/cutarea.m, + utils/Exp/manipulation/cutprofile.m, + utils/Exp/manipulation/mergeprofiles.m, + utils/Exp/manipulation/modifyposition.m, + utils/Exp/manipulation/removepoints.m, + utils/Exp/manipulation/removeprofile.m, + utils/Exp/manipulation/removeseveralpoints.m, + utils/Exp/manipulation/undoplots.m, + utils/Exp/readwrite/expread.m, utils/Exp/readwrite/expwrite.m, + utils/Exp/readwrite/expwriteasvertices.m, + utils/Exp/readwrite/newline.m, utils/Exp/readwrite/put_file.m, + utils/Exp/readwrite/read_file.m, utils/Exp/readwrite/readfile.m, + utils/Exp/readwrite/readline.m, utils/Exp/readwrite/writefile.m, + utils/Find/locate.m, utils/Geometry/SegIntersect.m, + utils/Geometry/find_point.m, utils/Hulls/inhull.m, + utils/Hulls/insidehull.m, utils/Hulls/interval.m, + utils/Hulls/intsecl.m, utils/Hulls/intsecpl.m, + utils/Hulls/iscross.m, utils/Hulls/isinpoly.m, + utils/Hulls/isinpolylarge.m, utils/Hulls/ispolygon.m, + utils/Hulls/linechk.m, utils/ImageProcessing/gradient_perso.m, + utils/ImageProcessing/im_resize.m, + utils/ImageProcessing/mean_congrid.m, + utils/ImageProcessing/rebin.m, + utils/Interp/griddata_grid_to_mesh.m, + utils/Interp/griddata_grid_to_mesh_completer.m, + utils/Interp/griddata_grid_to_mesh_nan.m, + utils/Interp/griddata_mesh_to_grid.m, + utils/Interp/griddata_mesh_to_mesh.m, + utils/Interp/griddata_mesh_to_mesh_3d.m, + utils/Interp/griddata_nearest.m, + utils/Interp/griddata_nearest_matrix.m, + utils/Interp/griddata_nearest_nan.m, + utils/Interp/griddata_nearest_vector.m, + utils/Interp/griddata_perso.m, utils/LatLong/ll2xy.m, + utils/LatLong/mapll.m, utils/LatLong/mapxy.m, + utils/LatLong/xyscale_south.m, utils/Math/fixdec.m, + utils/Meca/effective_value.m, utils/Meca/glen_coefficients.m, + utils/Meca/lithostaticpressure.m, utils/Meca/paterson.m, + utils/Meca/tau_principal.m, utils/Mesh/BuildAdaptedMesh.m, + utils/Miscellaneous/create_region.m, + utils/Miscellaneous/findarg.m, utils/Miscellaneous/round_ice.m, + utils/Model/ProcessParallelParametersFromCieloRc.m, + utils/Model/loadmodel.m, utils/Nightly/nightlyrun.m, + utils/Nightly/nightlyruncielo.m, utils/Plot/squarezoom.m, + utils/Shell/issmdir.m, utils/Sound/beep_ice.m, + utils/String/discardnum.m, utils/String/logoutput.m, + utils/String/strsplit.m, utils/UpdateArchive/updatearchive.m, + utils/Visu/plot_results.m, utils/Visu/twofig.m, utils/Visu/vi.m, + utils/Visu/vic.m, utils/Visu/vii.m, utils/Visu/vim.m, + utils/Visu/vim3.m: reorg + +2009-04-03 15:43 morlighe + + * src/: c/MakefileIce, perl/DiagnosticAlter.pl: reorg + +2009-04-03 15:42 morlighe + + * src/c/shared/: MakefileIce, Exp/IsInPoly.c, Ice/Contour.c, + Ice/Contour.h, Ice/CreateElemMatrix.c, Ice/CreateElemVector.c, + Ice/GaussPenta.c, Ice/GaussSegment.c, Ice/GaussTria.c, + Ice/GetBFromTemperature.c, Ice/GetParameterList.c, + Ice/Getalpha2FromFrictionParameters.c, Ice/Ice.h, + Ice/MatrixUtils.c, Ice/SetDofs.c, Ice/SharedPentaElem.c, + Ice/SharedTriaElem.c, Ice/getgriddata.c, Ice/recover_input.c: Big + reorg + +2009-04-03 15:39 morlighe + + * src/mex/MakefileIce: big reorg + +2009-04-03 15:37 morlighe + + * src/mex/: ArgusContourToMesh/ArgusContourToMesh.m, + ArgusContourToMesh/Makefile, DataInterp/DataInterp.m, + DataInterp/Makefile, HoleFiller/Makefile, MeshPartition/Makefile, + SetStructureField/Makefile, + SetStructureField/SetStructureField.c, + SetStructureField/SetStructureField.h, TriMesh/Makefile, + TriMeshProcessRifts/Makefile, TriMeshRefine/Makefile, + Visu/Makefile, pentaelem/CreateKMatrix.c, + pentaelem/CreateKMatrix.h, pentaelem/CreatePVector.c, + pentaelem/CreatePVector.h, pentaelem/Makefile, + triaelem/CreateKMatrix.c, triaelem/CreateKMatrix.h, + triaelem/Makefile: Big Reorg + +2009-04-03 15:29 morlighe + + * src/c/shared/sharedice.h: Missing file + +2009-03-18 12:06 larour + + * MakefileIce: diverse. + +2009-03-18 12:05 larour + + * MakefileIce: Moved Makefile to MakefileIce + +2009-03-18 12:04 larour + + * src/MakefileIce: Missing links + +2009-03-18 12:02 larour + + * src/c/: MakefileIce, ArgusContourToMeshx/ArgusContourToMesh.h, + ArgusContourToMeshx/ArgusContourToMeshx.c, + ArgusContourToMeshx/Contour.c, ArgusContourToMeshx/Contour.h, + ArgusContourToMeshx/Makefile, HoleFillerx/HoleFiller.h, + HoleFillerx/HoleFillerCrippen.c, HoleFillerx/HoleFillerx.c, + HoleFillerx/Makefile, IceDataInterpx/DataInterp.h, + IceDataInterpx/DataInterpx.c, IceDataInterpx/Makefile, + MeshPartitionx/Makefile, MeshPartitionx/MeshPartition.h, + MeshPartitionx/MeshPartitionx.c, Visux/Makefile, Visux/Visu.h, + Visux/Visux.c, shared/MakefileIce, shared/Exp/ExpIce.h, + shared/TriMesh/TriMesh.h: x code taken out of modules + +2009-03-18 11:57 larour + + * src/mex/: DataInterp/DataInterp.c, DataInterp/DataInterp.h, + DataInterp/DataInterpx.c, DataInterp/Makefile, + HoleFiller/HoleFiller.c, MeshPartition/MeshPartition.c: Wrong + header files + +2009-03-18 11:53 larour + + * src/mex/: ArgusContourToMesh/ArgusContourToMesh.c, + ArgusContourToMesh/ArgusContourToMesh.h, + ArgusContourToMesh/ArgusContourToMeshx.c, + ArgusContourToMesh/Contour.c, ArgusContourToMesh/Contour.h, + ArgusContourToMesh/IsInPoly.c, ArgusContourToMesh/Makefile, + HoleFiller/HoleFiller.h, HoleFiller/HoleFillerCrippen.c, + HoleFiller/HoleFillerx.c, HoleFiller/Makefile, + MeshPartition/Makefile, MeshPartition/MeshPartition.h, + MeshPartition/MeshPartitionx.c, TriMesh/TriMesh.c, + TriMeshProcessRifts/TriMeshProcessRifts.c, + TriMeshRefine/TriMeshRefine.c, Visu/Makefile, Visu/Visu.c, + Visu/Visu.h, Visu/Visux.c: Took out x code layer + +2009-03-18 11:06 larour + + * etc/config_linux64.mk: [no log message] + +2009-03-18 11:05 larour + + * etc/config_linux64.mk: Replaced ICE by ISSM_DIR + +2009-03-18 10:56 larour + + * src/c/shared/TriMesh/GridInsideHole.c: minor. + +2009-03-18 10:38 morlighe + + * scripts/archive.sh: fixed archive.sh + +2009-03-18 10:37 larour + + * src/MakefileIce: Moved Makefile.issm to MakefileIce + +2009-03-18 10:36 larour + + * src/mex/: Makefile, MakefileIce: Moved Makefile to MakefileIce + +2009-03-18 10:35 larour + + * src/mex/: TriMesh/Makefile, TriMesh/TriMesh.c, + TriMeshProcessRifts/Makefile, + TriMeshProcessRifts/TriMeshProcessRifts.c, + TriMeshRefine/Makefile, TriMeshRefine/TriMeshRefine.c: Now + references sharedice.a library. + +2009-03-18 10:32 larour + + * src/c/shared/: MakefileIce, Exp/DomainOutlineReadIce.c, + Exp/ExpIce.h, TriMesh/AssociateSegmentToElement.c, + TriMesh/GridInsideHole.c, TriMesh/Makefile, + TriMesh/OrderSegments.c, TriMesh/SplitMeshForRifts.c, + TriMesh/TriMesh.h, TriMesh/TriMeshUtils.c: Shared is not in + shared/ + +2009-03-18 10:32 morlighe + + * archive.sh: moved to scripts + +2009-03-18 08:31 larour + + * install.sh: Gone baby gone... Niac niac. + +2009-03-18 08:25 larour + + * mailinglist, cron/mailinglist: Gone to cron + +2009-03-18 08:23 larour + + * todo: Gone to Trash + +2009-03-18 08:23 larour + + * startup.m, bin/startup.m: Moved to bin + +2009-03-18 08:09 larour + + * startup.m: issmdir could not be found! (thanks Mathieu!) + +2009-03-18 08:03 larour + + * scripts/archive.sh: Moved from root directory + +2009-03-18 07:50 larour + + * cron/linux_cronfile: Updated Cron to cron + +2009-03-18 07:41 larour + + * etc/environment_variables: Replaced Libs by libs. + +2009-03-18 07:21 larour + + * src/pro/: bytscl.m, plot_cielo.pro: From Utils to pro/ for Idl + utils + +2009-03-18 07:14 larour + + * src/mex/: Makefile, ArgusContourToMesh/ArgusContourToMesh.c, + ArgusContourToMesh/ArgusContourToMesh.h, + ArgusContourToMesh/ArgusContourToMesh.m, + ArgusContourToMesh/ArgusContourToMeshx.c, + ArgusContourToMesh/Contour.c, ArgusContourToMesh/Contour.h, + ArgusContourToMesh/IsInPoly.c, ArgusContourToMesh/Makefile, + DataInterp/DataInterp.c, DataInterp/DataInterp.h, + DataInterp/DataInterp.m, DataInterp/DataInterpx.c, + DataInterp/Makefile, HoleFiller/HoleFiller.c, + HoleFiller/HoleFiller.h, HoleFiller/HoleFillerCrippen.c, + HoleFiller/HoleFillerx.c, HoleFiller/Makefile, + MeshPartition/Makefile, MeshPartition/MeshPartition.c, + MeshPartition/MeshPartition.h, MeshPartition/MeshPartitionx.c, + TriMesh/Makefile, TriMesh/TriMesh.c, + TriMeshProcessRifts/Makefile, + TriMeshProcessRifts/TriMeshProcessRifts.c, + TriMeshRefine/Makefile, TriMeshRefine/TriMeshRefine.c, + Visu/Makefile, Visu/Visu.c, Visu/Visu.h, Visu/Visux.c: + Modifications to run in new directory + +2009-03-18 06:57 larour + + * etc/: config_linux32.mk, config_linux64.mk, config_mac.mk, + mexopts_v5.sh, mexopts_v76.sh: New path etc/ to mex options file. + +2009-03-18 06:52 larour + + * etc/environment.sh: New path to config. + +2009-03-18 06:45 larour + + * doc/: Makefile, developperguide.pdf, theoryguide.pdf, + userguide.pdf, theoryguide/Algorithm.png, + theoryguide/Assembly.png, theoryguide/MINI.png, + theoryguide/Makefile, theoryguide/TpmpMb.png, + theoryguide/accumulation.png, theoryguide/barycentric_penta.png, + theoryguide/barycentric_tria.png, theoryguide/bilanmass.png, + theoryguide/friction_geometry.png, theoryguide/friction_kin.png, + theoryguide/geometry3D.png, theoryguide/melting.png, + theoryguide/meshpenalty.png, theoryguide/penalized_vel_2.png, + theoryguide/penalized_vel_3.png, theoryguide/penalties1.png, + theoryguide/pentaelem.png, theoryguide/prog1.png, + theoryguide/prog2.png, theoryguide/progi.png, + theoryguide/quadelem.png, theoryguide/schema1.png, + theoryguide/schema4.png, theoryguide/schema5.png, + theoryguide/segment.png, theoryguide/tetraelem.png, + theoryguide/theoryguide.tex, theoryguide/thermal_loop.png, + theoryguide/triaelem.png, userguide/Amery.png, + userguide/Antarctica.png, userguide/Makefile, + userguide/argus.png, userguide/argus_DO.png, + userguide/argus_Front.png, userguide/argus_GL.png, + userguide/argus_Islands.png, userguide/argus_map.png, + userguide/contour.png, userguide/layers.png, + userguide/userguide.tex: Moved Doc to doc + +2009-03-18 06:42 larour + + * cron/: README, ice.sh, killingforeign.sh, linux_cronfile, + nightlyrun.sh, tag.sh, testingforeign.sh: Moved Cron to cron + +2009-03-18 05:46 larour + + * etc/: Make_default_rules.mk, README, cielo.rc, config_linux32.mk, + config_linux64.mk, config_mac.mk, environment.sh, + environment_variables, mexopts_mac.sh, mexopts_v5.sh, + mexopts_v651.sh, mexopts_v704.sh, mexopts_v76.sh: Moved Etc to + etc + +2009-03-17 18:56 larour + + * Makefile, Makefile.issm: Moved Makefile to Makefile.issm to make + room for Cielo makefile. + +2009-03-17 18:04 larour + + * README: Diverse + +2009-03-17 18:02 larour + + * INSTALL, README: some info + +2009-03-17 17:57 larour + + * startup.m: More elegant way to recove ISSM_DIR + +2009-03-17 14:32 larour + + * test/test.m: Gone: ignore + +2009-03-17 14:29 larour + + * test/test.m: test dir: ignore + +2009-03-17 14:28 larour + + * test.m: test: ignore + +2009-03-17 14:23 larour + + * test.m: test: ignore + +2009-03-17 13:59 larour + + * startup.m: SUITESPARSE moved to Libs/suitesparse + +2009-03-17 13:58 larour + + * Makefile: Took out doxygen doc, now in Doc/developperguide/ + makefile. + +2009-03-17 13:56 larour + + * doxygen.config: c html doc using doxygen, and matlab html doc + using m2html + +2009-03-17 12:08 morlighe + + * install.sh: metis is needed by MeshPartition module + +2009-03-17 11:55 morlighe + + * install.sh: Added compilation of triangle + +2009-03-17 11:48 morlighe + + * install.sh: Added an install.sh file to check that .bashrc is + correclty configured and automated compilation + +2009-03-17 08:13 larour + + * README: How to get ISSM to work + +2009-03-17 08:12 larour + + * startup.m: Simpler startup file. + +2009-03-17 08:10 larour + + * install.sh: Not needed anymore + +2009-03-17 07:41 larour + + * Makefile: New modules framework + +2009-03-17 07:41 larour + + * archive.sh: Naming + +2009-03-13 16:39 larour + + * doxygen.config: Automatic documentation generation. + +2009-03-13 11:09 morlighe + + * contributors.txt: added IsInpoly.c contrib + +2009-03-13 09:48 morlighe + + * contributors.txt: not used anymore + +2009-03-11 17:06 morlighe + + * contributors.txt: updated contributors + +2009-03-05 12:22 morlighe + + * install.sh: change startup file first + +2009-03-02 16:40 morlighe + + * startup.m: simplified startup.m with genpath_ice + +2009-03-02 09:43 larour + + * startup.m: Added dakota directories. + +2009-02-28 21:55 larour + + * startup.m: Added responsefunctions + +2009-02-24 10:07 morlighe + + * install.sh: Added get number of CPUs and removes make -j 8 for + the first make (compilation fails) + +2009-02-23 15:49 larour + + * startup.m: Added Gdal path. + +2009-02-23 15:49 larour + + * Makefile, install.sh: Include Gdal compilation. + +2009-02-17 13:53 morlighe + + * startup.m: minor + +2009-02-17 13:52 morlighe + + * todo: [no log message] + +2009-02-17 13:52 morlighe + + * startup.m: Added missing directories in path + +2009-02-17 13:51 morlighe + + * Makefile: Added HoleFiller, and Public target + +2009-02-17 12:51 larour + + * todo: [no log message] + +2009-02-17 12:50 larour + + * startup.m: Added missing directories in path + +2009-02-17 12:49 larour + + * Makefile: Added HoleFiller, and Public target + +2009-02-11 10:52 morlighe + + * todo: test + +2009-02-10 15:32 larour + + * todo: Test4 + +2009-02-10 15:31 larour + + * todo: Test 3 + +2009-02-10 15:21 larour + + * todo: test + +2009-02-09 10:08 morlighe + + * contributors.txt: minor + +2009-02-06 12:11 morlighe + + * startup.m: Added HoleFiller Path + +2009-02-06 09:28 morlighe + + * install.sh: Added a script to install everything automatically + +2009-02-05 17:41 morlighe + + * todo: as usual + +2009-02-05 17:12 morlighe + + * startup.m: bad startup + +2009-02-05 16:50 larour + + * contributors.txt, startup.m, todo: Cleanup solutions + +2009-02-03 07:51 morlighe + + * startup.m: plot must be added to startup file + +2009-02-02 08:15 larour + + * todo: Mathieu? + +2009-01-27 09:30 larour + + * contributors.txt: Added contributors list + +2009-01-27 09:28 larour + + * Makefile: Added HoleFiller module + +2009-01-20 14:53 ala + + * mailinglist: Added Ala's email address. + +2009-01-20 07:25 morlighe + + * startup.m: new path is needed for cielo + +2009-01-20 07:09 larour + + * mailinglist: Test, ignore + +2009-01-19 14:14 larour + + * mailinglist: Test of VCS commit. Ignore. + +2009-01-19 14:14 larour + + * mailinglist: Test of VCS commit. Ignore + +2009-01-19 11:05 larour + + * Makefile: Replaced path to config from MexConfig to Etc + +2008-12-30 08:45 morlighe + + * todo: Added some missing stuff from previous ice1 + +2008-12-29 11:54 larour + + * startup.m, todo: Some missing stuff from ice2 + +2008-12-29 09:23 seroussi + + * startup.m: Not needed + +2008-12-29 09:04 seroussi + + * startup.m: test + +2008-12-29 08:16 morlighe + + * todo: as usual + +2008-12-24 10:39 morlighe + + * startup.m: antepenultimate test + +2008-12-24 10:28 morlighe + + * startup.m: back + +2008-12-24 10:16 morlighe + + * startup.m: check nightly run + +2008-12-24 10:13 seroussi + + * mailinglist: removed change + +2008-12-24 07:40 seroussi + + * mailinglist: to fix nightly runs and avoid 100 mails + +2008-12-22 09:27 morlighe + + * todo: as usual + +2008-12-22 07:36 morlighe + + * todo: as usual + +2008-12-05 11:33 morlighe + + * todo: commit to be done later + +2008-11-18 13:55 morlighe + + * todo: as usual + +2008-10-21 14:14 morlighe + + * todo: as usual + +2008-10-14 09:02 morlighe + + * todo: as usual + +2008-10-13 08:11 morlighe + + * todo: as usual + +2008-10-13 08:03 morlighe + + * todo: as usual + +2008-09-29 13:22 morlighe + + * todo: as usual + +2008-09-26 16:55 larour + + * startup.m: Added model to startup + +2008-09-26 10:16 morlighe + + * todo: as usual + +2008-09-25 16:01 morlighe + + * todo: as usual + +2008-09-25 09:30 seroussi + + * todo: as usual + +2008-09-24 13:07 morlighe + + * todo: as usual + +2008-09-24 10:52 larour + + * todo: Simplified diagnostic solution + +2008-09-16 15:59 morlighe + + * todo: as usual + +2008-09-15 12:30 morlighe + + * todo: as usual + +2008-09-10 17:06 morlighe + + * todo: to do tomorrow + +2008-09-10 16:57 morlighe + + * todo: as usual + +2008-09-09 15:57 morlighe + + * todo: as usual + +2008-09-09 13:31 morlighe + + * todo: ice shelf basal velocity -> fixed + +2008-09-09 11:46 morlighe + + * todo: As usual + +2008-09-09 07:46 morlighe + + * todo: as usual + +2008-09-08 17:35 morlighe + + * todo: Good luck! + +2008-09-08 09:23 seroussi + + * startup.m: minor + +2008-09-08 09:22 seroussi + + * startup.m: simplified projections project3d + +2008-09-08 08:38 morlighe + + * todo: as usual + +2008-09-05 16:31 larour + + * todo: as usual + +2008-09-05 15:53 larour + + * todo: Improved transient and steady state thermal solution + +2008-09-04 14:21 morlighe + + * todo: as usual + +2008-09-04 11:53 morlighe + + * todo: As usual + +2008-09-03 16:56 morlighe + + * todo: As usual + +2008-09-03 12:23 larour + + * todo: Important + +2008-09-03 09:21 morlighe + + * todo: as usual + +2008-09-02 16:38 larour + + * todo: New transient solution + +2008-09-02 13:08 larour + + * todo: New penalty approach to computation of melting in thermal + solution + +2008-09-02 09:20 larour + + * todo: As usual + +2008-08-30 07:12 larour + + * todo: As usual + +2008-08-29 10:19 larour + + * todo: as usual + +2008-08-28 17:05 seroussi + + * todo: updated todo + +2008-08-27 13:36 larour + + * todo: Implemented basal vertical velocity solution. Started + thermal solution + +2008-08-26 17:10 larour + + * todo: as usual + +2008-08-26 14:44 larour + + * todo: Implemented and fixed bugs in vertical solution + +2008-08-26 10:54 larour + + * todo: Implemented new 2d-3d modeling. Extended computations of + velocities vertically + +2008-08-26 10:52 larour + + * startup.m: Better path + +2008-08-25 09:54 larour + + * startup.m: Took out the startup error + +2008-08-24 14:39 larour + + * todo: as usual + +2008-08-21 17:42 larour + + * startup.m: New startup + +2008-08-21 17:38 larour + + * mailinglist: Added mailing list + +2008-08-07 10:39 morlighe + + * startup.m: oups... + +2008-08-07 10:37 morlighe + + * startup.m: Added a new field md.visualization. If 1: + visualization of each iteration results in icecontrol + +2008-08-01 23:36 larour + + * todo: As usual + +2008-08-01 12:09 larour + + * startup.m: Public/ + +2008-07-31 14:08 morlighe + + * startup.m: Same convention for MacAyealdiagnostic and control + (2nu -> nu) + +2008-07-25 17:10 larour + + * todo: As usual + +2008-07-25 11:35 larour + + * Makefile, todo: Added Makefiles to compiled shared and objects in + 'c' code + +2008-07-23 08:28 larour + + * startup.m, todo: Missing MeshPartition path + +2008-07-21 15:11 larour + + * Makefile: Addedd MeshPartition module. + +2008-07-03 22:05 larour + + * todo: As usual + +2008-07-01 11:12 larour + + * todo: Added cronjob capabilities + +2008-06-30 14:50 seroussi + + * todo: Updated todo + +2008-06-30 11:40 larour + + * Makefile: Separated Doc target from all target + +2008-06-26 16:17 larour + + * startup.m: Added DataInterp to path + +2008-06-26 16:10 larour + + * Makefile: Added DataInterp target + +2008-06-17 11:06 larour + + * Makefile: Added top level Makefile to drive overall compilation + +2008-06-12 14:44 larour + + * startup.m: Added ArgusContourToMesh module, to run with + parameterize.m + +2008-06-04 10:11 seroussi + + * todo: Update todo + +2008-06-03 16:40 larour + + * todo: Some more things to do. + +2008-06-03 16:40 larour + + * startup.m: Took out objects from the ICE path, as the @grid class + interferes with the graph2d/grid.m routine. + +2008-06-03 11:54 larour + + * todo: Todo + +2008-06-03 10:43 larour + + * archive.sh: New clean targets. + +2008-06-02 16:24 larour + + * startup.m: Updated paths to solution scripts. + +2008-06-02 16:12 larour + + * startup.m: Modified path to Triangle meshing modules. + +2008-05-30 11:32 larour + + * todo: Additional task on square model. + +2008-05-30 11:18 larour + + * todo: Added cholesky task. + +2008-05-30 10:47 larour + + * todo: Todo file. Update as much as needed. + +2008-05-29 14:26 seroussi + + * startup.m: Comment on lastwarn + +2008-05-29 14:07 morlighe + + * startup.m: fixed problem with startup's warning message + +2008-05-29 12:16 larour + + * startup.m: Updated startup.m file for new changes in names of + solution sequences + +2008-05-29 11:57 larour + + * startup.m: Improved startup file. Added missing Model in the Ice + path. + +2008-05-29 11:54 larour + + * startup.m: Improved startup file + +2008-05-29 11:50 larour + + * startup.m: Improved startup file + +2008-05-29 11:45 larour + + * startup.m: Improved startup file + +2008-05-29 11:42 larour + + * startup.m: Improved startup file + +2008-05-29 10:06 morlighe + + * startup.m: [no log message] + +2008-05-21 11:08 larour + + * archive.sh: New tar creation routine. + +2008-05-21 10:53 larour + + * startup.m: New shuffling of code architecture. + +2008-05-21 10:13 larour + + * startup.m: Cleaned up startup file. + +2008-04-19 12:33 larour + + * startup.m: Working out of tier3 now. + +2008-03-05 13:31 larour + + * startup.m: Too many changes to explain + +2007-12-05 14:48 larour + + * Makefile: Not needed for now. + +2007-12-05 14:45 larour + + * startup.m: Added windows startup to the existing linux startup + matlab script. + +2007-12-05 12:12 larour + + * startup.m: Cleaned up a little bit. Only two paths to setup: for + Cielo, and for Ice codes. + +2007-11-27 12:07 larour + + * startup.m: New TriMesh modules, added path. + +2007-11-21 18:11 larour + + * startup.m: Added MacAyealControlModel to the matlab path. + +2007-11-19 15:25 larour + + * startup.m: Promoted tier3_ice to tier2_ice. + +2007-11-18 16:07 larour + + * startup.m: This file should be symbolically linked to the matlab + starting directory. + +2007-10-25 09:30 larour + + * Makefile: Ice flow modeling + +2007-10-25 09:30 larour + + * Makefile: Initial revision + Index: /issm/trunk/LICENSE =================================================================== --- /issm/trunk/LICENSE (revision 1) +++ /issm/trunk/LICENSE (revision 1) @@ -0,0 +1,340 @@ + GNU GENERAL PUBLIC LICENSE + Version 2, June 1991 + + Copyright (C) 1989, 1991 Free Software Foundation, Inc. + 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The licenses for most software are designed to take away your +freedom to share and change it. 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Index: /issm/trunk/Makefile.am =================================================================== --- /issm/trunk/Makefile.am (revision 28275) +++ /issm/trunk/Makefile.am (revision 1) @@ -1,5 +1,2 @@ -EXTRA_DIST = reconf scripts test m4 examples cron etc doc packages contributors.txt -SUBDIRS = src -bin_SCRIPTS= README.rtf - -ACLOCAL_AMFLAGS = -I m4 +EXTRA_DIST = reconf scripts test INSTALLICE LICENSE m4 examples cron etc doc packages ChangeLogCielo ChangeLogIce contributors.txt run READMEICE startup.m startup.m startup.m startup.m todo MakefileIce +SUBDIRS = src bin Index: /issm/trunk/Makefile.in =================================================================== --- /issm/trunk/Makefile.in (revision 1) +++ /issm/trunk/Makefile.in (revision 1) @@ -0,0 +1,653 @@ +# Makefile.in generated by automake 1.10.2 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, +# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ +VPATH = @srcdir@ +pkgdatadir = $(datadir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkgincludedir = $(includedir)/@PACKAGE@ +am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd +install_sh_DATA = $(install_sh) -c -m 644 +install_sh_PROGRAM = $(install_sh) -c +install_sh_SCRIPT = $(install_sh) -c +INSTALL_HEADER = $(INSTALL_DATA) +transform = $(program_transform_name) +NORMAL_INSTALL = : +PRE_INSTALL = : +POST_INSTALL = : +NORMAL_UNINSTALL = : +PRE_UNINSTALL = : +POST_UNINSTALL = : +build_triplet = @build@ +host_triplet = @host@ +target_triplet = @target@ +subdir = . +DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \ + $(srcdir)/Makefile.in $(srcdir)/config.h.in \ + $(top_srcdir)/configure AUTHORS COPYING ChangeLog INSTALL NEWS \ + compile config.guess config.sub depcomp install-sh missing +ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 +am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \ + $(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac +am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) +am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \ + configure.lineno config.status.lineno +mkinstalldirs = $(install_sh) -d +CONFIG_HEADER = config.h +CONFIG_CLEAN_FILES = +SOURCES = +DIST_SOURCES = +RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ + html-recursive info-recursive install-data-recursive \ + install-dvi-recursive install-exec-recursive \ + install-html-recursive install-info-recursive \ + install-pdf-recursive install-ps-recursive install-recursive \ + installcheck-recursive installdirs-recursive pdf-recursive \ + ps-recursive uninstall-recursive +RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ + distclean-recursive maintainer-clean-recursive +ETAGS = etags +CTAGS = ctags +DIST_SUBDIRS = $(SUBDIRS) +DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) +distdir = $(PACKAGE)-$(VERSION) +top_distdir = $(distdir) +am__remove_distdir = \ + { test ! -d $(distdir) \ + || { find $(distdir) -type d ! -perm -200 -exec chmod u+w {} ';' \ + && rm -fr $(distdir); 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It is free +software; you can redistribute it and/or modify it under the terms of the GNU +General Public License as published by the Free Software Foundation; either +version 2 of the License, or (at your option) any later version. A copy of +this license is included in the LICENSE file, and is also available online +from http://www.gnu.org/copyleft/gpl.html. Also refer to the COPYRIGHT file +for important U.S. Government legal notices. -ISSM is California Institute of Technology Copyright, Distributed under BSD Three Clause License. +The ISSM distribution contains libraries which are available separately +under compatible licensing terms. In particular, many of the libraries +in methods and packages are available separately under the GNU General +Public License (GPL) or Lesser General Public License (LGPL). +------------------------------------------------------------------------------ +Overview. -Copyright (c) 2002-2018, California Institute of Technology. -All rights reserved. Based on Government Sponsored Research under contracts -NAS7-1407 and/or NAS7-03001. +More to come -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions are met: +Refer to http://www.jpl.nasa.gov/ISSM/software.html for additional +information. -1. Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. -2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. -3. Neither the name of the California Institute of Technology (Caltech), - its operating division the Jet Propulsion Laboratory (JPL), the National - Aeronautics and Space Administration (NASA), nor the names of its - contributors may be used to endorse or promote products derived from - this software without specific prior written permission. +------------------------------------------------------------------------------ +Distribution. -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND -ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED -WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE -DISCLAIMED. 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Other references are available from + the ISSM Web site (http://www.jpl.nasa.gov/ISSM). + +src The main source code repository for the ISSM system. + +test Files for regression and unit testing of the ISSM system. + ------------------------------------------------------------------------------ +Installation. + +The installation procedure uses a standard GNU installation based on autoconf. +The basic steps are to invoke 'configure' to generate Makefiles for your +particular system and then invoke 'make' to compile the sources. See the +INSTALL file for detailed instructions. + +------------------------------------------------------------------------------ Index: /issm/trunk/aclocal.m4 =================================================================== --- /issm/trunk/aclocal.m4 (revision 1) +++ /issm/trunk/aclocal.m4 (revision 1) @@ -0,0 +1,926 @@ +# generated automatically by aclocal 1.10.2 -*- Autoconf -*- + +# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, +# 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# This file is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +m4_ifndef([AC_AUTOCONF_VERSION], + [m4_copy([m4_PACKAGE_VERSION], [AC_AUTOCONF_VERSION])])dnl +m4_if(m4_defn([AC_AUTOCONF_VERSION]), [2.63],, +[m4_warning([this file was generated for autoconf 2.63. +You have another version of autoconf. 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See below for descriptions of some of the useful variables. + +Defaults for the options are specified in brackets. + +Configuration: + -h, --help display this help and exit + --help=short display options specific to this package + --help=recursive display the short help of all the included packages + -V, --version display version information and exit + -q, --quiet, --silent do not print \`checking...' messages + --cache-file=FILE cache test results in FILE [disabled] + -C, --config-cache alias for \`--cache-file=config.cache' + -n, --no-create do not create output files + --srcdir=DIR find the sources in DIR [configure dir or \`..'] + +Installation directories: + --prefix=PREFIX install architecture-independent files in PREFIX + [$ac_default_prefix] + --exec-prefix=EPREFIX install architecture-dependent files in EPREFIX + [PREFIX] + +By default, \`make install' will install all the files in +\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify +an installation prefix other than \`$ac_default_prefix' using \`--prefix', +for instance \`--prefix=\$HOME'. + +For better control, use the options below. + +Fine tuning of the installation directories: + --bindir=DIR user executables [EPREFIX/bin] + --sbindir=DIR system admin executables [EPREFIX/sbin] + --libexecdir=DIR program executables [EPREFIX/libexec] + --sysconfdir=DIR read-only single-machine data [PREFIX/etc] + --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com] + --localstatedir=DIR modifiable single-machine data [PREFIX/var] + --libdir=DIR object code libraries [EPREFIX/lib] + --includedir=DIR C header files [PREFIX/include] + --oldincludedir=DIR C header files for non-gcc [/usr/include] + --datarootdir=DIR read-only arch.-independent data root [PREFIX/share] + --datadir=DIR read-only architecture-independent data [DATAROOTDIR] + --infodir=DIR info documentation [DATAROOTDIR/info] + --localedir=DIR locale-dependent data [DATAROOTDIR/locale] + --mandir=DIR man documentation [DATAROOTDIR/man] + --docdir=DIR documentation root @<:@DATAROOTDIR/doc/issm@:>@ + --htmldir=DIR html documentation [DOCDIR] + --dvidir=DIR dvi documentation [DOCDIR] + --pdfdir=DIR pdf documentation [DOCDIR] + --psdir=DIR ps documentation [DOCDIR] +_ACEOF + + cat <<\_ACEOF + +Program names: + --program-prefix=PREFIX prepend PREFIX to installed program names + --program-suffix=SUFFIX append SUFFIX to installed program names + --program-transform-name=PROGRAM run sed PROGRAM on installed program names + +X features: + --x-includes=DIR X include files are in DIR + --x-libraries=DIR X library files are in DIR + +System types: + --build=BUILD configure for building on BUILD [guessed] + --host=HOST cross-compile to build programs to run on HOST [BUILD] + --target=TARGET configure for building compilers for TARGET [HOST] +_ACEOF +fi + +if test -n "$ac_init_help"; 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We prefer a C program (faster), +# so one script is as good as another. But avoid the broken or +# incompatible versions: +# SysV /etc/install, /usr/sbin/install +# SunOS /usr/etc/install +# IRIX /sbin/install +# AIX /bin/install +# AmigaOS /C/install, which installs bootblocks on floppy discs +# AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag +# AFS /usr/afsws/bin/install, which mishandles nonexistent args +# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff" +# OS/2's system install, which has a completely different semantic +# ./install, which can be erroneously created by make from ./install.sh. +# Reject install programs that cannot install multiple files. +{ $as_echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5 +$as_echo_n "checking for a BSD-compatible install... " >&6; } +if test -z "$INSTALL"; then +if test "${ac_cv_path_install+set}" = set; then + $as_echo_n "(cached) " >&6 +else + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + # Account for people who put trailing slashes in PATH elements. +case $as_dir/ in + ./ | .// | /cC/* | \ + /etc/* | /usr/sbin/* | /usr/etc/* | /sbin/* | /usr/afsws/bin/* | \ + ?:\\/os2\\/install\\/* | ?:\\/OS2\\/INSTALL\\/* | \ + /usr/ucb/* ) ;; + *) + # OSF1 and SCO ODT 3.0 have their own names for install. + # Don't use installbsd from OSF since it installs stuff as root + # by default. + for ac_prog in ginstall scoinst install; do + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; }; then + if test $ac_prog = install && + grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then + # AIX install. It has an incompatible calling convention. + : + elif test $ac_prog = install && + grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then + # program-specific install script used by HP pwplus--don't use. + : + else + rm -rf conftest.one conftest.two conftest.dir + echo one > conftest.one + echo two > conftest.two + mkdir conftest.dir + if "$as_dir/$ac_prog$ac_exec_ext" -c conftest.one conftest.two "`pwd`/conftest.dir" && + test -s conftest.one && test -s conftest.two && + test -s conftest.dir/conftest.one && + test -s conftest.dir/conftest.two + then + ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c" + break 3 + fi + fi + fi + done + done + ;; +esac + +done +IFS=$as_save_IFS + +rm -rf conftest.one conftest.two conftest.dir + +fi + if test "${ac_cv_path_install+set}" = set; then + INSTALL=$ac_cv_path_install + else + # As a last resort, use the slow shell script. Don't cache a + # value for INSTALL within a source directory, because that will + # break other packages using the cache if that directory is + # removed, or if the value is a relative name. + INSTALL=$ac_install_sh + fi +fi +{ $as_echo "$as_me:$LINENO: result: $INSTALL" >&5 +$as_echo "$INSTALL" >&6; } + +# Use test -z because SunOS4 sh mishandles braces in ${var-val}. +# It thinks the first close brace ends the variable substitution. +test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}' + +test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL}' + +test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644' + +{ $as_echo "$as_me:$LINENO: checking whether build environment is sane" >&5 +$as_echo_n "checking whether build environment is sane... " >&6; } +# Just in case +sleep 1 +echo timestamp > conftest.file +# Do `set' in a subshell so we don't clobber the current shell's +# arguments. Must try -L first in case configure is actually a +# symlink; some systems play weird games with the mod time of symlinks +# (eg FreeBSD returns the mod time of the symlink's containing +# directory). +if ( + set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null` + if test "$*" = "X"; then + # -L didn't work. + set X `ls -t $srcdir/configure conftest.file` + fi + rm -f conftest.file + if test "$*" != "X $srcdir/configure conftest.file" \ + && test "$*" != "X conftest.file $srcdir/configure"; then + + # If neither matched, then we have a broken ls. This can happen + # if, for instance, CONFIG_SHELL is bash and it inherits a + # broken ls alias from the environment. This has actually + # happened. Such a system could not be considered "sane". + { { $as_echo "$as_me:$LINENO: error: ls -t appears to fail. Make sure there is not a broken +alias in your environment" >&5 +$as_echo "$as_me: error: ls -t appears to fail. Make sure there is not a broken +alias in your environment" >&2;} + { (exit 1); exit 1; }; } + fi + + test "$2" = conftest.file + ) +then + # Ok. + : +else + { { $as_echo "$as_me:$LINENO: error: newly created file is older than distributed files! +Check your system clock" >&5 +$as_echo "$as_me: error: newly created file is older than distributed files! +Check your system clock" >&2;} + { (exit 1); exit 1; }; } +fi +{ $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } +test "$program_prefix" != NONE && + program_transform_name="s&^&$program_prefix&;$program_transform_name" +# Use a double $ so make ignores it. +test "$program_suffix" != NONE && + program_transform_name="s&\$&$program_suffix&;$program_transform_name" +# Double any \ or $. +# By default was `s,x,x', remove it if useless. +ac_script='s/[\\$]/&&/g;s/;s,x,x,$//' +program_transform_name=`$as_echo "$program_transform_name" | sed "$ac_script"` + +# expand $ac_aux_dir to an absolute path +am_aux_dir=`cd $ac_aux_dir && pwd` + +test x"${MISSING+set}" = xset || MISSING="\${SHELL} $am_aux_dir/missing" +# Use eval to expand $SHELL +if eval "$MISSING --run true"; then + am_missing_run="$MISSING --run " +else + am_missing_run= + { $as_echo "$as_me:$LINENO: WARNING: \`missing' script is too old or missing" >&5 +$as_echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;} +fi + +{ $as_echo "$as_me:$LINENO: checking for a thread-safe mkdir -p" >&5 +$as_echo_n "checking for a thread-safe mkdir -p... " >&6; } +if test -z "$MKDIR_P"; then + if test "${ac_cv_path_mkdir+set}" = set; then + $as_echo_n "(cached) " >&6 +else + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH$PATH_SEPARATOR/opt/sfw/bin +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_prog in mkdir gmkdir; do + for ac_exec_ext in '' $ac_executable_extensions; do + { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue + case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #( + 'mkdir (GNU coreutils) '* | \ + 'mkdir (coreutils) '* | \ + 'mkdir (fileutils) '4.1*) + ac_cv_path_mkdir=$as_dir/$ac_prog$ac_exec_ext + break 3;; + esac + done + done +done +IFS=$as_save_IFS + +fi + + if test "${ac_cv_path_mkdir+set}" = set; then + MKDIR_P="$ac_cv_path_mkdir -p" + else + # As a last resort, use the slow shell script. Don't cache a + # value for MKDIR_P within a source directory, because that will + # break other packages using the cache if that directory is + # removed, or if the value is a relative name. + test -d ./--version && rmdir ./--version + MKDIR_P="$ac_install_sh -d" + fi +fi +{ $as_echo "$as_me:$LINENO: result: $MKDIR_P" >&5 +$as_echo "$MKDIR_P" >&6; } + +mkdir_p="$MKDIR_P" +case $mkdir_p in + [\\/$]* | ?:[\\/]*) ;; + */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;; +esac + +for ac_prog in gawk mawk nawk awk +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_AWK+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$AWK"; then + ac_cv_prog_AWK="$AWK" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_AWK="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +AWK=$ac_cv_prog_AWK +if test -n "$AWK"; then + { $as_echo "$as_me:$LINENO: result: $AWK" >&5 +$as_echo "$AWK" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$AWK" && break +done + +{ $as_echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5 +$as_echo_n "checking whether ${MAKE-make} sets \$(MAKE)... " >&6; } +set x ${MAKE-make} +ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'` +if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.make <<\_ACEOF +SHELL = /bin/sh +all: + @echo '@@@%%%=$(MAKE)=@@@%%%' +_ACEOF +# GNU make sometimes prints "make[1]: Entering...", which would confuse us. +case `${MAKE-make} -f conftest.make 2>/dev/null` in + *@@@%%%=?*=@@@%%%*) + eval ac_cv_prog_make_${ac_make}_set=yes;; + *) + eval ac_cv_prog_make_${ac_make}_set=no;; +esac +rm -f conftest.make +fi +if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + SET_MAKE= +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + SET_MAKE="MAKE=${MAKE-make}" +fi + +rm -rf .tst 2>/dev/null +mkdir .tst 2>/dev/null +if test -d .tst; then + am__leading_dot=. +else + am__leading_dot=_ +fi +rmdir .tst 2>/dev/null + +if test "`cd $srcdir && pwd`" != "`pwd`"; then + # Use -I$(srcdir) only when $(srcdir) != ., so that make's output + # is not polluted with repeated "-I." + am__isrc=' -I$(srcdir)' + # test to see if srcdir already configured + if test -f $srcdir/config.status; then + { { $as_echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5 +$as_echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;} + { (exit 1); exit 1; }; } + fi +fi + +# test whether we have cygpath +if test -z "$CYGPATH_W"; then + if (cygpath --version) >/dev/null 2>/dev/null; then + CYGPATH_W='cygpath -w' + else + CYGPATH_W=echo + fi +fi + + +# Define the identity of the package. + PACKAGE='issm' + VERSION='1.0' + + +cat >>confdefs.h <<_ACEOF +@%:@define PACKAGE "$PACKAGE" +_ACEOF + + +cat >>confdefs.h <<_ACEOF +@%:@define VERSION "$VERSION" +_ACEOF + +# Some tools Automake needs. + +ACLOCAL=${ACLOCAL-"${am_missing_run}aclocal-${am__api_version}"} + + +AUTOCONF=${AUTOCONF-"${am_missing_run}autoconf"} + + +AUTOMAKE=${AUTOMAKE-"${am_missing_run}automake-${am__api_version}"} + + +AUTOHEADER=${AUTOHEADER-"${am_missing_run}autoheader"} + + +MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"} + +install_sh=${install_sh-"\$(SHELL) $am_aux_dir/install-sh"} + +# Installed binaries are usually stripped using `strip' when the user +# run `make install-strip'. However `strip' might not be the right +# tool to use in cross-compilation environments, therefore Automake +# will honor the `STRIP' environment variable to overrule this program. +if test "$cross_compiling" != no; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. +set dummy ${ac_tool_prefix}strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$STRIP"; then + ac_cv_prog_STRIP="$STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_STRIP="${ac_tool_prefix}strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +STRIP=$ac_cv_prog_STRIP +if test -n "$STRIP"; then + { $as_echo "$as_me:$LINENO: result: $STRIP" >&5 +$as_echo "$STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_STRIP"; then + ac_ct_STRIP=$STRIP + # Extract the first word of "strip", so it can be a program name with args. +set dummy strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_STRIP"; then + ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_STRIP="strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP +if test -n "$ac_ct_STRIP"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5 +$as_echo "$ac_ct_STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_STRIP" = x; then + STRIP=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + STRIP=$ac_ct_STRIP + fi +else + STRIP="$ac_cv_prog_STRIP" +fi + +fi +INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s" + +# We need awk for the "check" target. The system "awk" is bad on +# some platforms. +# Always define AMTAR for backward compatibility. + +AMTAR=${AMTAR-"${am_missing_run}tar"} + +am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -' + + + + + +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. +set dummy ${ac_tool_prefix}ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$RANLIB"; then + ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +RANLIB=$ac_cv_prog_RANLIB +if test -n "$RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $RANLIB" >&5 +$as_echo "$RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_RANLIB"; then + ac_ct_RANLIB=$RANLIB + # Extract the first word of "ranlib", so it can be a program name with args. +set dummy ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_RANLIB"; then + ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_RANLIB="ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB +if test -n "$ac_ct_RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5 +$as_echo "$ac_ct_RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_RANLIB" = x; then + RANLIB=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + RANLIB=$ac_ct_RANLIB + fi +else + RANLIB="$ac_cv_prog_RANLIB" +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args. +set dummy ${ac_tool_prefix}gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CC"; then + ac_ct_CC=$CC + # Extract the first word of "gcc", so it can be a program name with args. +set dummy gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +else + CC="$ac_cv_prog_CC" +fi + +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args. +set dummy ${ac_tool_prefix}cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + fi +fi +if test -z "$CC"; then + # Extract the first word of "cc", so it can be a program name with args. +set dummy cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else + ac_prog_rejected=no +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then + ac_prog_rejected=yes + continue + fi + ac_cv_prog_CC="cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +if test $ac_prog_rejected = yes; then + # We found a bogon in the path, so make sure we never use it. + set dummy $ac_cv_prog_CC + shift + if test $@%:@ != 0; then + # We chose a different compiler from the bogus one. + # However, it has the same basename, so the bogon will be chosen + # first if we set CC to just the basename; use the full file name. + shift + ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@" + fi +fi +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + for ac_prog in cl.exe + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="$ac_tool_prefix$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$CC" && break + done +fi +if test -z "$CC"; then + ac_ct_CC=$CC + for ac_prog in cl.exe +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$ac_ct_CC" && break +done + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +fi + +fi + + +test -z "$CC" && { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } + +# Provide some information about the compiler. +$as_echo "$as_me:$LINENO: checking for C compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +{ (ac_try="$ac_compiler --version >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler --version >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -v >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -v >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -V >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -V >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } + +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +ac_clean_files_save=$ac_clean_files +ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out" +# Try to create an executable without -o first, disregard a.out. +# It will help us diagnose broken compilers, and finding out an intuition +# of exeext. +{ $as_echo "$as_me:$LINENO: checking for C compiler default output file name" >&5 +$as_echo_n "checking for C compiler default output file name... " >&6; } +ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'` + +# The possible output files: +ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*" + +ac_rmfiles= +for ac_file in $ac_files +do + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; + * ) ac_rmfiles="$ac_rmfiles $ac_file";; + esac +done +rm -f $ac_rmfiles + +if { (ac_try="$ac_link_default" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link_default") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + # Autoconf-2.13 could set the ac_cv_exeext variable to `no'. +# So ignore a value of `no', otherwise this would lead to `EXEEXT = no' +# in a Makefile. We should not override ac_cv_exeext if it was cached, +# so that the user can short-circuit this test for compilers unknown to +# Autoconf. +for ac_file in $ac_files '' +do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) + ;; + [ab].out ) + # We found the default executable, but exeext='' is most + # certainly right. + break;; + *.* ) + if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no; + then :; else + ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + fi + # We set ac_cv_exeext here because the later test for it is not + # safe: cross compilers may not add the suffix if given an `-o' + # argument, so we may need to know it at that point already. + # Even if this section looks crufty: it has the advantage of + # actually working. + break;; + * ) + break;; + esac +done +test "$ac_cv_exeext" = no && ac_cv_exeext= + +else + ac_file='' +fi + +{ $as_echo "$as_me:$LINENO: result: $ac_file" >&5 +$as_echo "$ac_file" >&6; } +if test -z "$ac_file"; then + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + +{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: C compiler cannot create executables +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: C compiler cannot create executables +See \`config.log' for more details." >&2;} + { (exit 77); exit 77; }; }; } +fi + +ac_exeext=$ac_cv_exeext + +# Check that the compiler produces executables we can run. If not, either +# the compiler is broken, or we cross compile. +{ $as_echo "$as_me:$LINENO: checking whether the C compiler works" >&5 +$as_echo_n "checking whether the C compiler works... " >&6; } +# FIXME: These cross compiler hacks should be removed for Autoconf 3.0 +# If not cross compiling, check that we can run a simple program. +if test "$cross_compiling" != yes; then + if { ac_try='./$ac_file' + { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; }; then + cross_compiling=no + else + if test "$cross_compiling" = maybe; then + cross_compiling=yes + else + { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: cannot run C compiled programs. +If you meant to cross compile, use \`--host'. +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: cannot run C compiled programs. +If you meant to cross compile, use \`--host'. +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } + fi + fi +fi +{ $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + +rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out +ac_clean_files=$ac_clean_files_save +# Check that the compiler produces executables we can run. If not, either +# the compiler is broken, or we cross compile. +{ $as_echo "$as_me:$LINENO: checking whether we are cross compiling" >&5 +$as_echo_n "checking whether we are cross compiling... " >&6; } +{ $as_echo "$as_me:$LINENO: result: $cross_compiling" >&5 +$as_echo "$cross_compiling" >&6; } + +{ $as_echo "$as_me:$LINENO: checking for suffix of executables" >&5 +$as_echo_n "checking for suffix of executables... " >&6; } +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + # If both `conftest.exe' and `conftest' are `present' (well, observable) +# catch `conftest.exe'. For instance with Cygwin, `ls conftest' will +# work properly (i.e., refer to `conftest.exe'), while it won't with +# `rm'. +for ac_file in conftest.exe conftest conftest.*; do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; + *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + break;; + * ) break;; + esac +done +else + { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: cannot compute suffix of executables: cannot compile and link +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: cannot compute suffix of executables: cannot compile and link +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } +fi + +rm -f conftest$ac_cv_exeext +{ $as_echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5 +$as_echo "$ac_cv_exeext" >&6; } + +rm -f conftest.$ac_ext +EXEEXT=$ac_cv_exeext +ac_exeext=$EXEEXT +{ $as_echo "$as_me:$LINENO: checking for suffix of object files" >&5 +$as_echo_n "checking for suffix of object files... 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The following induces an error, until -std is added to get + proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an + array size at least. It's necessary to write '\x00'==0 to get something + that's true only with -std. */ +int osf4_cc_array ['\x00' == 0 ? 1 : -1]; + +/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters + inside strings and character constants. */ +#define FOO(x) 'x' +int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1]; + +int test (int i, double x); +struct s1 {int (*f) (int a);}; +struct s2 {int (*f) (double a);}; +int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); +int argc; +char **argv; +int +main () +{ +return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; + ; + return 0; +} +_ACEOF +for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \ + -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__" +do + CC="$ac_save_CC $ac_arg" + rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_cc_c89=$ac_arg +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + +fi + +rm -f core conftest.err conftest.$ac_objext + test "x$ac_cv_prog_cc_c89" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC + +fi +# AC_CACHE_VAL +case "x$ac_cv_prog_cc_c89" in + x) + { $as_echo "$as_me:$LINENO: result: none needed" >&5 +$as_echo "none needed" >&6; } ;; + xno) + { $as_echo "$as_me:$LINENO: result: unsupported" >&5 +$as_echo "unsupported" >&6; } ;; + *) + CC="$CC $ac_cv_prog_cc_c89" + { $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5 +$as_echo "$ac_cv_prog_cc_c89" >&6; } ;; +esac + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +DEPDIR="${am__leading_dot}deps" + +ac_config_commands="$ac_config_commands depfiles" + + +am_make=${MAKE-make} +cat > confinc << 'END' +am__doit: + @echo done +.PHONY: am__doit +END +# If we don't find an include directive, just comment out the code. +{ $as_echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5 +$as_echo_n "checking for style of include used by $am_make... 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" >&6; } +if test "${ac_cv_prog_ac_ct_F77+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_F77"; then + ac_cv_prog_ac_ct_F77="$ac_ct_F77" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_F77="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_F77=$ac_cv_prog_ac_ct_F77 +if test -n "$ac_ct_F77"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_F77" >&5 +$as_echo "$ac_ct_F77" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$ac_ct_F77" && break +done + + if test "x$ac_ct_F77" = x; then + F77="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + F77=$ac_ct_F77 + fi +fi + + +# Provide some information about the compiler. +$as_echo "$as_me:$LINENO: checking for Fortran 77 compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +{ (ac_try="$ac_compiler --version >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler --version >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -v >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -v >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -V >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -V >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +rm -f a.out + +# If we don't use `.F' as extension, the preprocessor is not run on the +# input file. (Note that this only needs to work for GNU compilers.) +ac_save_ext=$ac_ext +ac_ext=F +{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU Fortran 77 compiler" >&5 +$as_echo_n "checking whether we are using the GNU Fortran 77 compiler... " >&6; } +if test "${ac_cv_f77_compiler_gnu+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main +#ifndef __GNUC__ + choke me +#endif + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_compiler_gnu=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_compiler_gnu=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext +ac_cv_f77_compiler_gnu=$ac_compiler_gnu + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_compiler_gnu" >&5 +$as_echo "$ac_cv_f77_compiler_gnu" >&6; } +ac_ext=$ac_save_ext +ac_test_FFLAGS=${FFLAGS+set} +ac_save_FFLAGS=$FFLAGS +FFLAGS= +{ $as_echo "$as_me:$LINENO: checking whether $F77 accepts -g" >&5 +$as_echo_n "checking whether $F77 accepts -g... " >&6; } +if test "${ac_cv_prog_f77_g+set}" = set; then + $as_echo_n "(cached) " >&6 +else + FFLAGS=-g +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_g=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_prog_f77_g=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_g" >&5 +$as_echo "$ac_cv_prog_f77_g" >&6; } +if test "$ac_test_FFLAGS" = set; then + FFLAGS=$ac_save_FFLAGS +elif test $ac_cv_prog_f77_g = yes; then + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-g -O2" + else + FFLAGS="-g" + fi +else + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-O2" + else + FFLAGS= + fi +fi + +if test $ac_compiler_gnu = yes; then + G77=yes +else + G77= +fi +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +ac_ext=f +ac_compile='$F77 -c $FFLAGS conftest.$ac_ext >&5' +ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_f77_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to get verbose linking output from $F77" >&5 +$as_echo_n "checking how to get verbose linking output from $F77... " >&6; } +if test "${ac_cv_prog_f77_v+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_v= +# Try some options frequently used verbose output +for ac_verb in -v -verbose --verbose -V -\#\#\#; do + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_verb" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + # look for -l* and *.a constructs in the output + for ac_arg in $ac_f77_v_output; do + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a | -[lLRu]*) + ac_cv_prog_f77_v=$ac_verb + break 2 ;; + esac + done +done +if test -z "$ac_cv_prog_f77_v"; then + { $as_echo "$as_me:$LINENO: WARNING: cannot determine how to obtain linking information from $F77" >&5 +$as_echo "$as_me: WARNING: cannot determine how to obtain linking information from $F77" >&2;} +fi +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: WARNING: compilation failed" >&5 +$as_echo "$as_me: WARNING: compilation failed" >&2;} +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_v" >&5 +$as_echo "$ac_cv_prog_f77_v" >&6; } +{ $as_echo "$as_me:$LINENO: checking for Fortran 77 libraries of $F77" >&5 +$as_echo_n "checking for Fortran 77 libraries of $F77... " >&6; } +if test "${ac_cv_f77_libs+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "x$FLIBS" != "x"; then + ac_cv_f77_libs="$FLIBS" # Let the user override the test. +else + +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_cv_prog_f77_v" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + +ac_cv_f77_libs= + +# Save positional arguments (if any) +ac_save_positional="$@" + +set X $ac_f77_v_output +while test $@%:@ != 1; do + shift + ac_arg=$1 + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -bI:*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_arg; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi +fi + + ;; + # Ignore these flags. + -lang* | -lcrt*.o | -lc | -lgcc* | -lSystem | -libmil | -LANG:=* | -LIST:* | -LNO:*) + ;; + -lkernel32) + test x"$CYGWIN" != xyes && ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + -[LRuYz]) + # These flags, when seen by themselves, take an argument. + # We remove the space between option and argument and re-iterate + # unless we find an empty arg or a new option (starting with -) + case $2 in + "" | -*);; + *) + ac_arg="$ac_arg$2" + shift; shift + set X $ac_arg "$@" + ;; + esac + ;; + -YP,*) + for ac_j in `$as_echo "$ac_arg" | sed -e 's/-YP,/-L/;s/:/ -L/g'`; do + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_j" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_arg="$ac_arg $ac_j" + ac_cv_f77_libs="$ac_cv_f77_libs $ac_j" +fi + + done + ;; + -[lLR]*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -zallextract*| -zdefaultextract) + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + # Ignore everything else. + esac +done +# restore positional arguments +set X $ac_save_positional; shift + +# We only consider "LD_RUN_PATH" on Solaris systems. If this is seen, +# then we insist that the "run path" must be an absolute path (i.e. it +# must begin with a "/"). +case `(uname -sr) 2>/dev/null` in + "SunOS 5"*) + ac_ld_run_path=`$as_echo "$ac_f77_v_output" | + sed -n 's,^.*LD_RUN_PATH *= *\(/[^ ]*\).*$,-R\1,p'` + test "x$ac_ld_run_path" != x && + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_ld_run_path; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_ld_run_path" +fi + ;; +esac +fi # test "x$[]_AC_LANG_PREFIX[]LIBS" = "x" + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_libs" >&5 +$as_echo "$ac_cv_f77_libs" >&6; } +FLIBS="$ac_cv_f77_libs" + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + +if test "x$CC" != xcc; then + { $as_echo "$as_me:$LINENO: checking whether $CC and cc understand -c and -o together" >&5 +$as_echo_n "checking whether $CC and cc understand -c and -o together... " >&6; } +else + { $as_echo "$as_me:$LINENO: checking whether cc understands -c and -o together" >&5 +$as_echo_n "checking whether cc understands -c and -o together... " >&6; } +fi +set dummy $CC; ac_cc=`$as_echo "$2" | + sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +if { as_var=ac_cv_prog_cc_${ac_cc}_c_o; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +# Make sure it works both with $CC and with simple cc. +# We do the test twice because some compilers refuse to overwrite an +# existing .o file with -o, though they will create one. +ac_try='$CC -c conftest.$ac_ext -o conftest2.$ac_objext >&5' +rm -f conftest2.* +if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; +then + eval ac_cv_prog_cc_${ac_cc}_c_o=yes + if test "x$CC" != xcc; then + # Test first that cc exists at all. + if { ac_try='cc -c conftest.$ac_ext >&5' + { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; }; then + ac_try='cc -c conftest.$ac_ext -o conftest2.$ac_objext >&5' + rm -f conftest2.* + if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; + then + # cc works too. + : + else + # cc exists but doesn't like -o. + eval ac_cv_prog_cc_${ac_cc}_c_o=no + fi + fi + fi +else + eval ac_cv_prog_cc_${ac_cc}_c_o=no +fi +rm -f core conftest* + +fi +if eval test \$ac_cv_prog_cc_${ac_cc}_c_o = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + +cat >>confdefs.h <<\_ACEOF +@%:@define NO_MINUS_C_MINUS_O 1 +_ACEOF + +fi + +# FIXME: we rely on the cache variable name because +# there is no other way. +set dummy $CC +am_cc=`echo $2 | sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +eval am_t=\$ac_cv_prog_cc_${am_cc}_c_o +if test "$am_t" != yes; then + # Losing compiler, so override with the script. + # FIXME: It is wrong to rewrite CC. + # But if we don't then we get into trouble of one sort or another. + # A longer-term fix would be to have automake use am__CC in this case, + # and then we could set am__CC="\$(top_srcdir)/compile \$(CC)" + CC="$am_aux_dir/compile $CC" +fi + + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5 +$as_echo_n "checking how to run the C preprocessor... " >&6; } +# On Suns, sometimes $CPP names a directory. +if test -n "$CPP" && test -d "$CPP"; then + CPP= +fi +if test -z "$CPP"; then + if test "${ac_cv_prog_CPP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # Double quotes because CPP needs to be expanded + for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp" + do + ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@ifdef __STDC__ +@%:@ include +@%:@else +@%:@ include +@%:@endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + break +fi + + done + ac_cv_prog_CPP=$CPP + +fi + CPP=$ac_cv_prog_CPP +else + ac_cv_prog_CPP=$CPP +fi +{ $as_echo "$as_me:$LINENO: result: $CPP" >&5 +$as_echo "$CPP" >&6; } +ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@ifdef __STDC__ +@%:@ include +@%:@else +@%:@ include +@%:@endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + : +else + { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +{ $as_echo "$as_me:$LINENO: checking for X" >&5 +$as_echo_n "checking for X... " >&6; } + + +@%:@ Check whether --with-x was given. +if test "${with_x+set}" = set; then + withval=$with_x; +fi + +# $have_x is `yes', `no', `disabled', or empty when we do not yet know. +if test "x$with_x" = xno; then + # The user explicitly disabled X. + have_x=disabled +else + case $x_includes,$x_libraries in #( + *\'*) { { $as_echo "$as_me:$LINENO: error: cannot use X directory names containing '" >&5 +$as_echo "$as_me: error: cannot use X directory names containing '" >&2;} + { (exit 1); exit 1; }; };; #( + *,NONE | NONE,*) if test "${ac_cv_have_x+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # One or both of the vars are not set, and there is no cached value. +ac_x_includes=no ac_x_libraries=no +rm -f -r conftest.dir +if mkdir conftest.dir; then + cd conftest.dir + cat >Imakefile <<'_ACEOF' +incroot: + @echo incroot='${INCROOT}' +usrlibdir: + @echo usrlibdir='${USRLIBDIR}' +libdir: + @echo libdir='${LIBDIR}' +_ACEOF + if (export CC; ${XMKMF-xmkmf}) >/dev/null 2>/dev/null && test -f Makefile; then + # GNU make sometimes prints "make[1]: Entering...", which would confuse us. + for ac_var in incroot usrlibdir libdir; do + eval "ac_im_$ac_var=\`\${MAKE-make} $ac_var 2>/dev/null | sed -n 's/^$ac_var=//p'\`" + done + # Open Windows xmkmf reportedly sets LIBDIR instead of USRLIBDIR. + for ac_extension in a so sl dylib la dll; do + if test ! -f "$ac_im_usrlibdir/libX11.$ac_extension" && + test -f "$ac_im_libdir/libX11.$ac_extension"; then + ac_im_usrlibdir=$ac_im_libdir; break + fi + done + # Screen out bogus values from the imake configuration. They are + # bogus both because they are the default anyway, and because + # using them would break gcc on systems where it needs fixed includes. + case $ac_im_incroot in + /usr/include) ac_x_includes= ;; + *) test -f "$ac_im_incroot/X11/Xos.h" && ac_x_includes=$ac_im_incroot;; + esac + case $ac_im_usrlibdir in + /usr/lib | /usr/lib64 | /lib | /lib64) ;; + *) test -d "$ac_im_usrlibdir" && ac_x_libraries=$ac_im_usrlibdir ;; + esac + fi + cd .. + rm -f -r conftest.dir +fi + +# Standard set of common directories for X headers. +# Check X11 before X11Rn because it is often a symlink to the current release. +ac_x_header_dirs=' +/usr/X11/include +/usr/X11R6/include +/usr/X11R5/include +/usr/X11R4/include + +/usr/include/X11 +/usr/include/X11R6 +/usr/include/X11R5 +/usr/include/X11R4 + +/usr/local/X11/include +/usr/local/X11R6/include +/usr/local/X11R5/include +/usr/local/X11R4/include + +/usr/local/include/X11 +/usr/local/include/X11R6 +/usr/local/include/X11R5 +/usr/local/include/X11R4 + +/usr/X386/include +/usr/x386/include +/usr/XFree86/include/X11 + +/usr/include +/usr/local/include +/usr/unsupported/include +/usr/athena/include +/usr/local/x11r5/include +/usr/lpp/Xamples/include + +/usr/openwin/include +/usr/openwin/share/include' + +if test "$ac_x_includes" = no; then + # Guess where to find include files, by looking for Xlib.h. + # First, try using that file with no special directory specified. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # We can compile using X headers with no special include directory. +ac_x_includes= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + for ac_dir in $ac_x_header_dirs; do + if test -r "$ac_dir/X11/Xlib.h"; then + ac_x_includes=$ac_dir + break + fi +done +fi + +rm -f conftest.err conftest.$ac_ext +fi # $ac_x_includes = no + +if test "$ac_x_libraries" = no; then + # Check for the libraries. + # See if we find them without any special options. + # Don't add to $LIBS permanently. + ac_save_LIBS=$LIBS + LIBS="-lX11 $LIBS" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +int +main () +{ +XrmInitialize () + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + LIBS=$ac_save_LIBS +# We can link X programs with no special library path. +ac_x_libraries= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS=$ac_save_LIBS +for ac_dir in `$as_echo "$ac_x_includes $ac_x_header_dirs" | sed s/include/lib/g` +do + # Don't even attempt the hair of trying to link an X program! + for ac_extension in a so sl dylib la dll; do + if test -r "$ac_dir/libX11.$ac_extension"; then + ac_x_libraries=$ac_dir + break 2 + fi + done +done +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi # $ac_x_libraries = no + +case $ac_x_includes,$ac_x_libraries in #( + no,* | *,no | *\'*) + # Didn't find X, or a directory has "'" in its name. + ac_cv_have_x="have_x=no";; #( + *) + # Record where we found X for the cache. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$ac_x_includes'\ + ac_x_libraries='$ac_x_libraries'" +esac +fi +;; #( + *) have_x=yes;; + esac + eval "$ac_cv_have_x" +fi # $with_x != no + +if test "$have_x" != yes; then + { $as_echo "$as_me:$LINENO: result: $have_x" >&5 +$as_echo "$have_x" >&6; } + no_x=yes +else + # If each of the values was on the command line, it overrides each guess. + test "x$x_includes" = xNONE && x_includes=$ac_x_includes + test "x$x_libraries" = xNONE && x_libraries=$ac_x_libraries + # Update the cache value to reflect the command line values. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$x_includes'\ + ac_x_libraries='$x_libraries'" + { $as_echo "$as_me:$LINENO: result: libraries $x_libraries, headers $x_includes" >&5 +$as_echo "libraries $x_libraries, headers $x_includes" >&6; } +fi + +if test "$no_x" = yes; then + # Not all programs may use this symbol, but it does not hurt to define it. + +cat >>confdefs.h <<\_ACEOF +@%:@define X_DISPLAY_MISSING 1 +_ACEOF + + X_CFLAGS= X_PRE_LIBS= X_LIBS= X_EXTRA_LIBS= +else + if test -n "$x_includes"; then + X_CFLAGS="$X_CFLAGS -I$x_includes" + fi + + # It would also be nice to do this for all -L options, not just this one. + if test -n "$x_libraries"; then + X_LIBS="$X_LIBS -L$x_libraries" + # For Solaris; some versions of Sun CC require a space after -R and + # others require no space. Words are not sufficient . . . . + { $as_echo "$as_me:$LINENO: checking whether -R must be followed by a space" >&5 +$as_echo_n "checking whether -R must be followed by a space... " >&6; } + ac_xsave_LIBS=$LIBS; LIBS="$LIBS -R$x_libraries" + ac_xsave_c_werror_flag=$ac_c_werror_flag + ac_c_werror_flag=yes + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + X_LIBS="$X_LIBS -R$x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS="$ac_xsave_LIBS -R $x_libraries" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + X_LIBS="$X_LIBS -R $x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: result: neither works" >&5 +$as_echo "neither works" >&6; } +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + ac_c_werror_flag=$ac_xsave_c_werror_flag + LIBS=$ac_xsave_LIBS + fi + + # Check for system-dependent libraries X programs must link with. + # Do this before checking for the system-independent R6 libraries + # (-lICE), since we may need -lsocket or whatever for X linking. + + if test "$ISC" = yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl_s -linet" + else + # Martyn Johnson says this is needed for Ultrix, if the X + # libraries were built with DECnet support. And Karl Berry says + # the Alpha needs dnet_stub (dnet does not exist). + ac_xsave_LIBS="$LIBS"; LIBS="$LIBS $X_LIBS -lX11" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char XOpenDisplay (); +int +main () +{ +return XOpenDisplay (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet... " >&6; } +if test "${ac_cv_lib_dnet_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet" +fi + + if test $ac_cv_lib_dnet_dnet_ntoa = no; then + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet_stub" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet_stub... " >&6; } +if test "${ac_cv_lib_dnet_stub_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet_stub $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_stub_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_stub_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_stub_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_stub_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet_stub" +fi + + fi +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + LIBS="$ac_xsave_LIBS" + + # msh@cis.ufl.edu says -lnsl (and -lsocket) are needed for his 386/AT, + # to get the SysV transport functions. + # Chad R. Larson says the Pyramis MIS-ES running DC/OSx (SVR4) + # needs -lnsl. + # The nsl library prevents programs from opening the X display + # on Irix 5.2, according to T.E. Dickey. + # The functions gethostbyname, getservbyname, and inet_addr are + # in -lbsd on LynxOS 3.0.1/i386, according to Lars Hecking. + { $as_echo "$as_me:$LINENO: checking for gethostbyname" >&5 +$as_echo_n "checking for gethostbyname... " >&6; } +if test "${ac_cv_func_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define gethostbyname to an innocuous variant, in case declares gethostbyname. + For example, HP-UX 11i declares gettimeofday. */ +#define gethostbyname innocuous_gethostbyname + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char gethostbyname (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef gethostbyname + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_gethostbyname || defined __stub___gethostbyname +choke me +#endif + +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_gethostbyname" >&5 +$as_echo "$ac_cv_func_gethostbyname" >&6; } + + if test $ac_cv_func_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5 +$as_echo_n "checking for gethostbyname in -lnsl... " >&6; } +if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lnsl $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_nsl_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_nsl_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5 +$as_echo "$ac_cv_lib_nsl_gethostbyname" >&6; } +if test "x$ac_cv_lib_nsl_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl" +fi + + if test $ac_cv_lib_nsl_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lbsd" >&5 +$as_echo_n "checking for gethostbyname in -lbsd... " >&6; } +if test "${ac_cv_lib_bsd_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lbsd $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_bsd_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_bsd_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_bsd_gethostbyname" >&5 +$as_echo "$ac_cv_lib_bsd_gethostbyname" >&6; } +if test "x$ac_cv_lib_bsd_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lbsd" +fi + + fi + fi + + # lieder@skyler.mavd.honeywell.com says without -lsocket, + # socket/setsockopt and other routines are undefined under SCO ODT + # 2.0. But -lsocket is broken on IRIX 5.2 (and is not necessary + # on later versions), says Simon Leinen: it contains gethostby* + # variants that don't use the name server (or something). -lsocket + # must be given before -lnsl if both are needed. We assume that + # if connect needs -lnsl, so does gethostbyname. + { $as_echo "$as_me:$LINENO: checking for connect" >&5 +$as_echo_n "checking for connect... " >&6; } +if test "${ac_cv_func_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define connect to an innocuous variant, in case declares connect. + For example, HP-UX 11i declares gettimeofday. */ +#define connect innocuous_connect + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char connect (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef connect + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_connect || defined __stub___connect +choke me +#endif + +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_connect" >&5 +$as_echo "$ac_cv_func_connect" >&6; } + + if test $ac_cv_func_connect = no; then + { $as_echo "$as_me:$LINENO: checking for connect in -lsocket" >&5 +$as_echo_n "checking for connect in -lsocket... " >&6; } +if test "${ac_cv_lib_socket_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lsocket $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_socket_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_socket_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5 +$as_echo "$ac_cv_lib_socket_connect" >&6; } +if test "x$ac_cv_lib_socket_connect" = x""yes; then + X_EXTRA_LIBS="-lsocket $X_EXTRA_LIBS" +fi + + fi + + # Guillermo Gomez says -lposix is necessary on A/UX. + { $as_echo "$as_me:$LINENO: checking for remove" >&5 +$as_echo_n "checking for remove... " >&6; } +if test "${ac_cv_func_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define remove to an innocuous variant, in case declares remove. + For example, HP-UX 11i declares gettimeofday. */ +#define remove innocuous_remove + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char remove (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef remove + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_remove || defined __stub___remove +choke me +#endif + +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_remove" >&5 +$as_echo "$ac_cv_func_remove" >&6; } + + if test $ac_cv_func_remove = no; then + { $as_echo "$as_me:$LINENO: checking for remove in -lposix" >&5 +$as_echo_n "checking for remove in -lposix... " >&6; } +if test "${ac_cv_lib_posix_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lposix $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_posix_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_posix_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_posix_remove" >&5 +$as_echo "$ac_cv_lib_posix_remove" >&6; } +if test "x$ac_cv_lib_posix_remove" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lposix" +fi + + fi + + # BSDI BSD/OS 2.1 needs -lipc for XOpenDisplay. + { $as_echo "$as_me:$LINENO: checking for shmat" >&5 +$as_echo_n "checking for shmat... " >&6; } +if test "${ac_cv_func_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define shmat to an innocuous variant, in case declares shmat. + For example, HP-UX 11i declares gettimeofday. */ +#define shmat innocuous_shmat + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char shmat (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef shmat + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_shmat || defined __stub___shmat +choke me +#endif + +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_shmat" >&5 +$as_echo "$ac_cv_func_shmat" >&6; } + + if test $ac_cv_func_shmat = no; then + { $as_echo "$as_me:$LINENO: checking for shmat in -lipc" >&5 +$as_echo_n "checking for shmat in -lipc... " >&6; } +if test "${ac_cv_lib_ipc_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lipc $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ipc_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ipc_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ipc_shmat" >&5 +$as_echo "$ac_cv_lib_ipc_shmat" >&6; } +if test "x$ac_cv_lib_ipc_shmat" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc" +fi + + fi + fi + + # Check for libraries that X11R6 Xt/Xaw programs need. + ac_save_LDFLAGS=$LDFLAGS + test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries" + # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to + # check for ICE first), but we must link in the order -lSM -lICE or + # we get undefined symbols. So assume we have SM if we have ICE. + # These have to be linked with before -lX11, unlike the other + # libraries we check for below, so use a different variable. + # John Interrante, Karl Berry + { $as_echo "$as_me:$LINENO: checking for IceConnectionNumber in -lICE" >&5 +$as_echo_n "checking for IceConnectionNumber in -lICE... " >&6; } +if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lICE $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char IceConnectionNumber (); +int +main () +{ +return IceConnectionNumber (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ICE_IceConnectionNumber=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ICE_IceConnectionNumber=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5 +$as_echo "$ac_cv_lib_ICE_IceConnectionNumber" >&6; } +if test "x$ac_cv_lib_ICE_IceConnectionNumber" = x""yes; then + X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE" +fi + + LDFLAGS=$ac_save_LDFLAGS + +fi + + +ax_enable_matlab= + +@%:@ Check whether --with-matlab-dir was given. +if test "${with_matlab_dir+set}" = set; then + withval=$with_matlab_dir; case $withval in + yes | no) + # Explicitly enable or disable Matlab but determine + # Matlab prefix automatically. + ax_enable_matlab=$withval + ;; + *) + # Enable Matlab and use ARG as the Matlab prefix. + # ARG must be an existing directory. + ax_enable_matlab=yes + MATLAB=`cd "${withval-/}" > /dev/null 2>&1 && pwd` + if test -z "$MATLAB" ; then + { { $as_echo "$as_me:$LINENO: error: invalid value '$withval' for --with-matlab" >&5 +$as_echo "$as_me: error: invalid value '$withval' for --with-matlab" >&2;} + { (exit 1); exit 1; }; } + fi + ;; +esac +fi + +if test x$ax_enable_matlab != xno ; then +{ $as_echo "$as_me:$LINENO: checking for Matlab prefix" >&5 +$as_echo_n "checking for Matlab prefix... " >&6; } +if test "${ax_cv_matlab+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "${MATLAB+set}" = set ; then + ax_cv_matlab=`cd "${MATLAB-/}" > /dev/null 2>&1 && pwd` +else + ax_cv_matlab= + IFS=${IFS= } ; ax_ifs=$IFS ; IFS=: + for ax_dir in ${PATH-/opt/bin:/usr/local/bin:/usr/bin:/bin} ; do + if test -z "$ax_dir" ; then + ax_dir=. + fi + if test -x "$ax_dir/matlab" ; then + ax_dir=`echo "$ax_dir" | sed 's,/bin$,,'` + # Directory sanity check. + ax_cv_matlab=`cd "${ax_dir-/}" > /dev/null 2>&1 && pwd` + if test -n "$ax_cv_matlab" ; then + break + fi + fi + done + IFS=$ax_ifs +fi +if test -z "$ax_cv_matlab" ; then + ax_cv_matlab="not found" +fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_cv_matlab" >&5 +$as_echo "$ax_cv_matlab" >&6; } +if test "$ax_cv_matlab" = "not found" ; then + unset MATLAB +else + # Strip trailing dashes. + MATLAB=`echo "$ax_cv_matlab" | sed 's,/*$,,'` +fi +{ $as_echo "$as_me:$LINENO: checking whether to enable Matlab support" >&5 +$as_echo_n "checking whether to enable Matlab support... " >&6; } +if test x$ax_enable_matlab != xno ; then + if test "${MATLAB+set}" = set && test -d "$MATLAB/extern/include" ; then + ax_enable_matlab=yes + elif test x$ax_enable_matlab = x ; then + ax_enable_matlab=no + else + # Fail if Matlab was explicitly enabled. + { $as_echo "$as_me:$LINENO: result: failure" >&5 +$as_echo "failure" >&6; } + { { $as_echo "$as_me:$LINENO: error: check your Matlab setup" >&5 +$as_echo "$as_me: error: check your Matlab setup" >&2;} + { (exit 1); exit 1; }; } + fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_enable_matlab" >&5 +$as_echo "$ax_enable_matlab" >&6; } +if test x$ax_enable_matlab = xyes ; then + +cat >>confdefs.h <<\_ACEOF +@%:@define HAVE_MATLAB 1 +_ACEOF + +fi +fi + + + + @%:@ Check whether --enable-debugging was given. +if test "${enable_debugging+set}" = set; then + enableval=$enable_debugging; enable_debugging=$enableval +else + enable_debugging=no +fi + + if test "x$enable_debugging" = xyes; then + +cat >>confdefs.h <<\_ACEOF +@%:@define _DEBUG_ 1 +_ACEOF + + fi + + +@%:@ Check whether --with-serial was given. +if test "${with_serial+set}" = set; then + withval=$with_serial; SERIAL_VALUE=$withval +else + SERIAL_VALUE="yes" +fi + + { $as_echo "$as_me:$LINENO: checking for serial compilation" >&5 +$as_echo_n "checking for serial compilation... " >&6; } + if test $SERIAL_VALUE = no; then + NOSERIAL_TRUE= + NOSERIAL_FALSE='#' +else + NOSERIAL_TRUE='#' + NOSERIAL_FALSE= +fi + + { $as_echo "$as_me:$LINENO: result: $SERIAL_VALUE" >&5 +$as_echo "$SERIAL_VALUE" >&6; } + + + +@%:@ Check whether --with-parallel was given. +if test "${with_parallel+set}" = set; then + withval=$with_parallel; PARALLEL_VALUE=$withval +else + PARALLEL_VALUE="yes" +fi + + { $as_echo "$as_me:$LINENO: checking for parallel compilation" >&5 +$as_echo_n "checking for parallel compilation... " >&6; } + if test $PARALLEL_VALUE = no; then + NOPARALLEL_TRUE= + NOPARALLEL_FALSE='#' +else + NOPARALLEL_TRUE='#' + NOPARALLEL_FALSE= +fi + + { $as_echo "$as_me:$LINENO: result: $PARALLEL_VALUE" >&5 +$as_echo "$PARALLEL_VALUE" >&6; } + + if test "$SERIAL_VALUE" != "yes" ; then + if test "$PARALLEL_VALUE" != "yes"; then + { { $as_echo "$as_me:$LINENO: error: cannot request --with-serial=no and --with-parallel=no at the same time!" >&5 +$as_echo "$as_me: error: cannot request --with-serial=no and --with-parallel=no at the same time!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + + +@%:@ Check whether --with-matlab-dir was given. +if test "${with_matlab_dir+set}" = set; then + withval=$with_matlab_dir; MATLAB_ROOT=$withval +else + MATLAB_ROOT="" +fi + + + if test -d "$MATLAB_ROOT"; then + + { $as_echo "$as_me:$LINENO: checking for Matlab headers and libraries in $MATLAB_ROOT" >&5 +$as_echo_n "checking for Matlab headers and libraries in $MATLAB_ROOT... " >&6; } + + HAVE_MATLAB=yes + MATLABINCL=-I"$MATLAB_ROOT/extern/include"; + MEXEXT=`$MATLAB_ROOT/bin/mexext` + MEXEXT=".$MEXEXT" + MEX=$MATLAB_ROOT/bin/mex + + case "${host_os}" in + *linux*) + if test "${host_cpu}" = "x86_64"; + then + MEXLIB=-L"$MATLAB_ROOT/bin/glnxa64/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnxa64/mexFunction.map"; + else + MEXLIB=-L"$MATLAB_ROOT/bin/glnx86/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnx86/mexFunction.map"; + fi + ;; + esac + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_MATLAB_ 1 +_ACEOF + + + + + + + + { $as_echo "$as_me:$LINENO: result: $HAVE_MATLAB" >&5 +$as_echo "$HAVE_MATLAB" >&6; } + else + HAVE_MATLAB=no + fi + + + if test $HAVE_MATLAB = no; then + if test "$SERIAL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: --with-matlab-dir missing. Matlab is needed to run ISSM serially!" >&5 +$as_echo "$as_me: error: --with-matlab-dir missing. Matlab is needed to run ISSM serially!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + if test $HAVE_MATLAB = yes; then + + + + +{ $as_echo "$as_me:$LINENO: checking for Matlab version" >&5 +$as_echo_n "checking for Matlab version... " >&6; } +if test "${ax_cv_matlab_version+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "${MATLAB_VERSION+set}" = set ; then + ax_cv_matlab_version=$MATLAB_VERSION +else + ax_cv_matlab_version= + # Loop over all known architectures. The final dot covers + # Matlab R11 and Matlab V4 for Windows. + for ax_arch in alpha glnxa64 glnx86 hp700 hpux ibm_rs sgi sol2 win32 mac maci . ; do + for ax_exec_name in matlab$EXEEXT MATLAB ; do + ax_matlab_exec=$MATLAB/bin/$ax_arch/${ax_exec_name} + if test -f $ax_matlab_exec ; then + # For Matlab R12, the version number is stored in a + # shared library. + ax_matlab_exec_2=`find $MATLAB/bin/$ax_arch -type f -name libmwservices\* -print 2> /dev/null` + if test -n "$ax_matlab_exec_2" ; then + ax_cv_matlab_version=`strings $ax_matlab_exec_2 2> /dev/null | egrep '^\|build_version_\|@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^|build_version_|\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + # For Matlab R11 and Matlab V4, the version number + # is stored in the executable program. + ax_cv_matlab_version=`strings $ax_matlab_exec 2> /dev/null | egrep '^@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + done + if test -n "$ax_cv_matlab_version" ; then + break + fi + done + if test -z "$ax_cv_matlab_version" ; then + ax_cv_matlab_version="not found" + fi +fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_cv_matlab_version" >&5 +$as_echo "$ax_cv_matlab_version" >&6; } +case $ax_cv_matlab_version in + @<:@1-9@:>@.@<:@0-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@.@<:@0-9@:>@) + MATLAB_VERSION=$ax_cv_matlab_version + MATLAB_MAJOR=`echo $MATLAB_VERSION | sed -e 's/^\(@<:@0-9@:>@*\)\.@<:@0-9@:>@*.*/\1/'` + MATLAB_MINOR=`echo $MATLAB_VERSION | sed -e 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` + ;; + *) + if test x$ax_enable_matlab = xyes ; then + { { $as_echo "$as_me:$LINENO: error: can not determine Matlab version number" >&5 +$as_echo "$as_me: error: can not determine Matlab version number" >&2;} + { (exit 1); exit 1; }; } + fi + MATLAB_VERSION= + MATLAB_MAJOR= + MATLAB_MINOR= + ;; +esac + + + +if test x$MATLAB_VERSION != x ; then + +cat >>confdefs.h <<_ACEOF +@%:@define MATLAB_MAJOR $MATLAB_MAJOR +_ACEOF + + +cat >>confdefs.h <<_ACEOF +@%:@define MATLAB_MINOR $MATLAB_MINOR +_ACEOF + +fi + + + largearrays=no + if test $MATLAB_MAJOR -ge 7; then + if test $MATLAB_MINOR -ge 5; then + if test "${host_cpu}" = "x86_64"; then + largearrays=yes + fi + fi + fi + fi + if test x$largearrays = xyes; then + LARGEARRAYS_TRUE= + LARGEARRAYS_FALSE='#' +else + LARGEARRAYS_TRUE='#' + LARGEARRAYS_FALSE= +fi + + + +@%:@ Check whether --with-triangle-dir was given. +if test "${with_triangle_dir+set}" = set; then + withval=$with_triangle_dir; TRIANGLE_ROOT=$withval +else + TRIANGLE_ROOT="" +fi + + { $as_echo "$as_me:$LINENO: checking for Triangle headers and libraries " >&5 +$as_echo_n "checking for Triangle headers and libraries ... " >&6; } + if test -d "$TRIANGLE_ROOT"; then + + + HAVE_TRIANGLE=yes + TRIANGLEINCL=-I$TRIANGLE_ROOT/ + TRIANGLELIB=$TRIANGLE_ROOT/triangle.a + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_TRIANGLE_ 1 +_ACEOF + + + + + else + HAVE_TRIANGLE=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_TRIANGLE" >&5 +$as_echo "$HAVE_TRIANGLE" >&6; } + + { $as_echo "$as_me:$LINENO: checking for triangle and parallel status" >&5 +$as_echo_n "checking for triangle and parallel status... " >&6; } + if test $HAVE_TRIANGLE = no; then + if test "$SERIAL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: --with-triangle-dir missing. Triangle is needed to run ISSM serially!" >&5 +$as_echo "$as_me: error: --with-triangle-dir missing. Triangle is needed to run ISSM serially!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + { $as_echo "$as_me:$LINENO: result: ok" >&5 +$as_echo "ok" >&6; } + + + +@%:@ Check whether --with-metis-dir was given. +if test "${with_metis_dir+set}" = set; then + withval=$with_metis_dir; METIS_ROOT=$withval +else + METIS_ROOT="" +fi + + + if test -d "$METIS_ROOT"; then + + { $as_echo "$as_me:$LINENO: checking for Metis headers and libraries in $METIS_ROOT" >&5 +$as_echo_n "checking for Metis headers and libraries in $METIS_ROOT... " >&6; } + + HAVE_METIS=yes + METISINCL=-I"$METIS_ROOT/Lib" + METISLIB=-L"$METIS_ROOT/ -lmetis" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_METIS_ 1 +_ACEOF + + + + else + HAVE_METIS=no + fi + + if test $HAVE_METIS = no; then + { { $as_echo "$as_me:$LINENO: error: --with-metis-dir missing. Metis is needed to run ISSM" >&5 +$as_echo "$as_me: error: --with-metis-dir missing. Metis is needed to run ISSM" >&2;} + { (exit 1); exit 1; }; }; + else + { $as_echo "$as_me:$LINENO: result: $HAVE_METIS" >&5 +$as_echo "$HAVE_METIS" >&6; } + fi + + { $as_echo "$as_me:$LINENO: checking for mpi..." >&5 +$as_echo_n "checking for mpi...... " >&6; } + +@%:@ Check whether --with-mpi-lib was given. +if test "${with_mpi_lib+set}" = set; then + withval=$with_mpi_lib; MPILIB=$withval +else + MPILIB="" +fi + + + +@%:@ Check whether --with-mpi-include was given. +if test "${with_mpi_include+set}" = set; then + withval=$with_mpi_include; MPI_INCLUDE=$withval +else + MPI_INCLUDE="" +fi + + + if test -z "$MPILIB" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: empty --with-mpi-lib options! MPI is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: empty --with-mpi-lib options! MPI is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + if test -z "$MPI_INCLUDE" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: empty --with-mpi-include directory! MPI is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: empty --with-mpi-include directory! MPI is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + HAVE_MPI=yes + MPIINCL=-I"$MPI_INCLUDE/" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_MPI_ 1 +_ACEOF + + + + fi + fi + { $as_echo "$as_me:$LINENO: result: done" >&5 +$as_echo "done" >&6; } + + +@%:@ Check whether --with-petsc-dir was given. +if test "${with_petsc_dir+set}" = set; then + withval=$with_petsc_dir; PETSC_ROOT=$withval +else + PETSC_ROOT="" +fi + + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ROOT" = "" ; then + { { $as_echo "$as_me:$LINENO: error: missing --with-petsc-dir argument for parallel compilation!" >&5 +$as_echo "$as_me: error: missing --with-petsc-dir argument for parallel compilation!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + +@%:@ Check whether --with-petsc-arch was given. +if test "${with_petsc_arch+set}" = set; then + withval=$with_petsc_arch; PETSC_ARCH=$withval +else + PETSC_ARCH="" +fi + + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ARCH" = "" ; then + { { $as_echo "$as_me:$LINENO: error: missing --with-petsc-arch argument for parallel compilation!" >&5 +$as_echo "$as_me: error: missing --with-petsc-arch argument for parallel compilation!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + { $as_echo "$as_me:$LINENO: checking for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH" >&5 +$as_echo_n "checking for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH... " >&6; } + + if test -d "$PETSC_ROOT"; then + + if test -d "$PETSC_ROOT/bmake/$PETSC_ARCH"; then + + PETSCINCL="-I$PETSC_ROOT/include -I$PETSC_ROOT/ -I$PETSC_ROOT/bmake/$PETSC_ARCH -I$PETSC_ROOT/src/mat/impls/dense/mpi/plapack/" + PETSCLIB="-L$PETSC_ROOT/lib/$PETSC_ARCH -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts" + + + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_PETSC_ 1 +_ACEOF + + + + + HAVE_PETSC=yes + else + HAVE_PETSC=no + fi + else + HAVE_PETSC=no + fi + + if test $HAVE_PETSC = no; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + { $as_echo "$as_me:$LINENO: result: $HAVE_PETSC" >&5 +$as_echo "$HAVE_PETSC" >&6; } + fi + + + +@%:@ Check whether --with-slepc-dir was given. +if test "${with_slepc_dir+set}" = set; then + withval=$with_slepc_dir; SLEPC_ROOT=$withval +else + SLEPC_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Slepc headers and libraries in $SLEPC_ROOT" >&5 +$as_echo_n "checking for Slepc headers and libraries in $SLEPC_ROOT... " >&6; } + if test -d "$SLEPC_ROOT"; then + + + HAVE_SLEPC=yes + SLEPCINCL=-I"$SLEPC_ROOT/include" + SLEPCLIB=-L"$SLEPC_ROOT/lib/ -lslepc" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_SLEPC_ 1 +_ACEOF + + + + else + HAVE_SLEPC=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_SLEPC" >&5 +$as_echo "$HAVE_SLEPC" >&6; } + + +@%:@ Check whether --with-scalapack-dir was given. +if test "${with_scalapack_dir+set}" = set; then + withval=$with_scalapack_dir; SCALAPACK_ROOT=$withval +else + SCALAPACK_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Scalapack headers and libraries in $SCALAPACK_ROOT" >&5 +$as_echo_n "checking for Scalapack headers and libraries in $SCALAPACK_ROOT... " >&6; } + if test -d "$SCALAPACK_ROOT"; then + + + HAVE_SCALAPACK=yes + SCALAPACKLIB=-L"$SCALAPACK_ROOT/ -lscalapack" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_SCALAPACK_ 1 +_ACEOF + + + else + HAVE_SCALAPACK=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_SCALAPACK" >&5 +$as_echo "$HAVE_SCALAPACK" >&6; } + + +@%:@ Check whether --with-blas-lapack-dir was given. +if test "${with_blas_lapack_dir+set}" = set; then + withval=$with_blas_lapack_dir; BLASLAPACK_ROOT=$withval +else + BLASLAPACK_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Blas and Lapack headers and libraries in $BLASLAPACK_ROOT" >&5 +$as_echo_n "checking for Blas and Lapack headers and libraries in $BLASLAPACK_ROOT... " >&6; } + if test -d "$BLASLAPACK_ROOT"; then + + + HAVE_BLASLAPACK=yes + BLASLAPACKINCL="" + BLASLAPACKLIB=-L"$BLASLAPACK_ROOT -lmkl_lapack -lmkl -lguide" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_BLASLAPACK_ 1 +_ACEOF + + + + else + HAVE_BLASLAPACK=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_BLASLAPACK" >&5 +$as_echo "$HAVE_BLASLAPACK" >&6; } + + + +@%:@ Check whether --with-plapack-dir was given. +if test "${with_plapack_dir+set}" = set; then + withval=$with_plapack_dir; PLAPACK_ROOT=$withval +else + PLAPACK_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Plapack headers and libraries in $PLAPACK_ROOT" >&5 +$as_echo_n "checking for Plapack headers and libraries in $PLAPACK_ROOT... " >&6; } + if test -d "$PLAPACK_ROOT"; then + + + HAVE_PLAPACK=yes + PLAPACKINCL=-I"$PLAPACK_ROOT/INCLUDE" + PLAPACKLIB=-L"$PLAPACK_ROOT/ -lPLAPACK" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_PLAPACK_ 1 +_ACEOF + + + + else + HAVE_PLAPACK=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_PLAPACK" >&5 +$as_echo "$HAVE_PLAPACK" >&6; } + + +@%:@ Check whether --with-mumps-dir was given. +if test "${with_mumps_dir+set}" = set; then + withval=$with_mumps_dir; MUMPS_ROOT=$withval +else + MUMPS_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Mumps headers and libraries in $MUMPS_ROOT" >&5 +$as_echo_n "checking for Mumps headers and libraries in $MUMPS_ROOT... 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" >&6; } + if test -d "$BLACS_ROOT"; then + + HAVE_BLACS=yes + BLACSINCL="" + BLACSLIB=-L"$BLACS_ROOT/ -lblacs" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_BLACS_ 1 +_ACEOF + + + + else + HAVE_BLACS=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_BLACS" >&5 +$as_echo "$HAVE_BLACS" >&6; } + + + + + +ac_config_files="$ac_config_files Makefile src/Makefile src/c/Makefile src/mex/Makefile bin/Makefile" + +cat >confcache <<\_ACEOF +# This file is a shell script that caches the results of configure +# tests run on this system so they can be shared between configure +# scripts and configure runs, see configure's option --config-cache. +# It is not useful on other systems. 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We prefer a C program (faster), +# so one script is as good as another. But avoid the broken or +# incompatible versions: +# SysV /etc/install, /usr/sbin/install +# SunOS /usr/etc/install +# IRIX /sbin/install +# AIX /bin/install +# AmigaOS /C/install, which installs bootblocks on floppy discs +# AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag +# AFS /usr/afsws/bin/install, which mishandles nonexistent args +# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff" +# OS/2's system install, which has a completely different semantic +# ./install, which can be erroneously created by make from ./install.sh. +# Reject install programs that cannot install multiple files. +{ $as_echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5 +$as_echo_n "checking for a BSD-compatible install... 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It has an incompatible calling convention. + : + elif test $ac_prog = install && + grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then + # program-specific install script used by HP pwplus--don't use. + : + else + rm -rf conftest.one conftest.two conftest.dir + echo one > conftest.one + echo two > conftest.two + mkdir conftest.dir + if "$as_dir/$ac_prog$ac_exec_ext" -c conftest.one conftest.two "`pwd`/conftest.dir" && + test -s conftest.one && test -s conftest.two && + test -s conftest.dir/conftest.one && + test -s conftest.dir/conftest.two + then + ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c" + break 3 + fi + fi + fi + done + done + ;; +esac + +done +IFS=$as_save_IFS + +rm -rf conftest.one conftest.two conftest.dir + +fi + if test "${ac_cv_path_install+set}" = set; then + INSTALL=$ac_cv_path_install + else + # As a last resort, use the slow shell script. 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" >&6; } +if test -z "$MKDIR_P"; then + if test "${ac_cv_path_mkdir+set}" = set; then + $as_echo_n "(cached) " >&6 +else + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH$PATH_SEPARATOR/opt/sfw/bin +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_prog in mkdir gmkdir; do + for ac_exec_ext in '' $ac_executable_extensions; do + { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue + case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #( + 'mkdir (GNU coreutils) '* | \ + 'mkdir (coreutils) '* | \ + 'mkdir (fileutils) '4.1*) + ac_cv_path_mkdir=$as_dir/$ac_prog$ac_exec_ext + break 3;; + esac + done + done +done +IFS=$as_save_IFS + +fi + + if test "${ac_cv_path_mkdir+set}" = set; then + MKDIR_P="$ac_cv_path_mkdir -p" + else + # As a last resort, use the slow shell script. Don't cache a + # value for MKDIR_P within a source directory, because that will + # break other packages using the cache if that directory is + # removed, or if the value is a relative name. + test -d ./--version && rmdir ./--version + MKDIR_P="$ac_install_sh -d" + fi +fi +{ $as_echo "$as_me:$LINENO: result: $MKDIR_P" >&5 +$as_echo "$MKDIR_P" >&6; } + +mkdir_p="$MKDIR_P" +case $mkdir_p in + [\\/$]* | ?:[\\/]*) ;; + */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;; +esac + +for ac_prog in gawk mawk nawk awk +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_AWK+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$AWK"; then + ac_cv_prog_AWK="$AWK" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_AWK="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +AWK=$ac_cv_prog_AWK +if test -n "$AWK"; then + { $as_echo "$as_me:$LINENO: result: $AWK" >&5 +$as_echo "$AWK" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$AWK" && break +done + +{ $as_echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5 +$as_echo_n "checking whether ${MAKE-make} sets \$(MAKE)... " >&6; } +set x ${MAKE-make} +ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'` +if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.make <<\_ACEOF +SHELL = /bin/sh +all: + @echo '@@@%%%=$(MAKE)=@@@%%%' +_ACEOF +# GNU make sometimes prints "make[1]: Entering...", which would confuse us. +case `${MAKE-make} -f conftest.make 2>/dev/null` in + *@@@%%%=?*=@@@%%%*) + eval ac_cv_prog_make_${ac_make}_set=yes;; + *) + eval ac_cv_prog_make_${ac_make}_set=no;; +esac +rm -f conftest.make +fi +if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + SET_MAKE= +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + SET_MAKE="MAKE=${MAKE-make}" +fi + +rm -rf .tst 2>/dev/null +mkdir .tst 2>/dev/null +if test -d .tst; then + am__leading_dot=. +else + am__leading_dot=_ +fi +rmdir .tst 2>/dev/null + +if test "`cd $srcdir && pwd`" != "`pwd`"; then + # Use -I$(srcdir) only when $(srcdir) != ., so that make's output + # is not polluted with repeated "-I." + am__isrc=' -I$(srcdir)' + # test to see if srcdir already configured + if test -f $srcdir/config.status; then + { { $as_echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5 +$as_echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;} + { (exit 1); exit 1; }; } + fi +fi + +# test whether we have cygpath +if test -z "$CYGPATH_W"; then + if (cygpath --version) >/dev/null 2>/dev/null; then + CYGPATH_W='cygpath -w' + else + CYGPATH_W=echo + fi +fi + + +# Define the identity of the package. + PACKAGE='issm' + VERSION='1.0' + + +cat >>confdefs.h <<_ACEOF +@%:@define PACKAGE "$PACKAGE" +_ACEOF + + +cat >>confdefs.h <<_ACEOF +@%:@define VERSION "$VERSION" +_ACEOF + +# Some tools Automake needs. + +ACLOCAL=${ACLOCAL-"${am_missing_run}aclocal-${am__api_version}"} + + +AUTOCONF=${AUTOCONF-"${am_missing_run}autoconf"} + + +AUTOMAKE=${AUTOMAKE-"${am_missing_run}automake-${am__api_version}"} + + +AUTOHEADER=${AUTOHEADER-"${am_missing_run}autoheader"} + + +MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"} + +install_sh=${install_sh-"\$(SHELL) $am_aux_dir/install-sh"} + +# Installed binaries are usually stripped using `strip' when the user +# run `make install-strip'. However `strip' might not be the right +# tool to use in cross-compilation environments, therefore Automake +# will honor the `STRIP' environment variable to overrule this program. +if test "$cross_compiling" != no; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. +set dummy ${ac_tool_prefix}strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$STRIP"; then + ac_cv_prog_STRIP="$STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_STRIP="${ac_tool_prefix}strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +STRIP=$ac_cv_prog_STRIP +if test -n "$STRIP"; then + { $as_echo "$as_me:$LINENO: result: $STRIP" >&5 +$as_echo "$STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_STRIP"; then + ac_ct_STRIP=$STRIP + # Extract the first word of "strip", so it can be a program name with args. +set dummy strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_STRIP"; then + ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_STRIP="strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP +if test -n "$ac_ct_STRIP"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5 +$as_echo "$ac_ct_STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_STRIP" = x; then + STRIP=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + STRIP=$ac_ct_STRIP + fi +else + STRIP="$ac_cv_prog_STRIP" +fi + +fi +INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s" + +# We need awk for the "check" target. The system "awk" is bad on +# some platforms. +# Always define AMTAR for backward compatibility. + +AMTAR=${AMTAR-"${am_missing_run}tar"} + +am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -' + + + + + +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. +set dummy ${ac_tool_prefix}ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$RANLIB"; then + ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +RANLIB=$ac_cv_prog_RANLIB +if test -n "$RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $RANLIB" >&5 +$as_echo "$RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_RANLIB"; then + ac_ct_RANLIB=$RANLIB + # Extract the first word of "ranlib", so it can be a program name with args. +set dummy ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_RANLIB"; then + ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_RANLIB="ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB +if test -n "$ac_ct_RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5 +$as_echo "$ac_ct_RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_RANLIB" = x; then + RANLIB=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + RANLIB=$ac_ct_RANLIB + fi +else + RANLIB="$ac_cv_prog_RANLIB" +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args. +set dummy ${ac_tool_prefix}gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CC"; then + ac_ct_CC=$CC + # Extract the first word of "gcc", so it can be a program name with args. +set dummy gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +else + CC="$ac_cv_prog_CC" +fi + +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args. +set dummy ${ac_tool_prefix}cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + fi +fi +if test -z "$CC"; then + # Extract the first word of "cc", so it can be a program name with args. +set dummy cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else + ac_prog_rejected=no +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then + ac_prog_rejected=yes + continue + fi + ac_cv_prog_CC="cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +if test $ac_prog_rejected = yes; then + # We found a bogon in the path, so make sure we never use it. + set dummy $ac_cv_prog_CC + shift + if test $@%:@ != 0; then + # We chose a different compiler from the bogus one. + # However, it has the same basename, so the bogon will be chosen + # first if we set CC to just the basename; use the full file name. + shift + ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@" + fi +fi +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + for ac_prog in cl.exe + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="$ac_tool_prefix$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$CC" && break + done +fi +if test -z "$CC"; then + ac_ct_CC=$CC + for ac_prog in cl.exe +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$ac_ct_CC" && break +done + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +fi + +fi + + +test -z "$CC" && { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } + +# Provide some information about the compiler. +$as_echo "$as_me:$LINENO: checking for C compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +{ (ac_try="$ac_compiler --version >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler --version >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -v >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -v >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -V >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -V >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } + +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +ac_clean_files_save=$ac_clean_files +ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out" +# Try to create an executable without -o first, disregard a.out. +# It will help us diagnose broken compilers, and finding out an intuition +# of exeext. +{ $as_echo "$as_me:$LINENO: checking for C compiler default output file name" >&5 +$as_echo_n "checking for C compiler default output file name... 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We should not override ac_cv_exeext if it was cached, +# so that the user can short-circuit this test for compilers unknown to +# Autoconf. +for ac_file in $ac_files '' +do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) + ;; + [ab].out ) + # We found the default executable, but exeext='' is most + # certainly right. + break;; + *.* ) + if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no; + then :; else + ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + fi + # We set ac_cv_exeext here because the later test for it is not + # safe: cross compilers may not add the suffix if given an `-o' + # argument, so we may need to know it at that point already. + # Even if this section looks crufty: it has the advantage of + # actually working. + break;; + * ) + break;; + esac +done +test "$ac_cv_exeext" = no && ac_cv_exeext= + +else + ac_file='' +fi + +{ $as_echo "$as_me:$LINENO: result: $ac_file" >&5 +$as_echo "$ac_file" >&6; } +if test -z "$ac_file"; then + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + +{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: C compiler cannot create executables +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: C compiler cannot create executables +See \`config.log' for more details." >&2;} + { (exit 77); exit 77; }; }; } +fi + +ac_exeext=$ac_cv_exeext + +# Check that the compiler produces executables we can run. 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The following induces an error, until -std is added to get + proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an + array size at least. It's necessary to write '\x00'==0 to get something + that's true only with -std. */ +int osf4_cc_array ['\x00' == 0 ? 1 : -1]; + +/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters + inside strings and character constants. */ +#define FOO(x) 'x' +int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1]; + +int test (int i, double x); +struct s1 {int (*f) (int a);}; +struct s2 {int (*f) (double a);}; +int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); +int argc; +char **argv; +int +main () +{ +return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; + ; + return 0; +} +_ACEOF +for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \ + -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__" +do + CC="$ac_save_CC $ac_arg" + rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_cc_c89=$ac_arg +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + +fi + +rm -f core conftest.err conftest.$ac_objext + test "x$ac_cv_prog_cc_c89" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC + +fi +# AC_CACHE_VAL +case "x$ac_cv_prog_cc_c89" in + x) + { $as_echo "$as_me:$LINENO: result: none needed" >&5 +$as_echo "none needed" >&6; } ;; + xno) + { $as_echo "$as_me:$LINENO: result: unsupported" >&5 +$as_echo "unsupported" >&6; } ;; + *) + CC="$CC $ac_cv_prog_cc_c89" + { $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5 +$as_echo "$ac_cv_prog_cc_c89" >&6; } ;; +esac + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +DEPDIR="${am__leading_dot}deps" + +ac_config_commands="$ac_config_commands depfiles" + + +am_make=${MAKE-make} +cat > confinc << 'END' +am__doit: + @echo done +.PHONY: am__doit +END +# If we don't find an include directive, just comment out the code. +{ $as_echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5 +$as_echo_n "checking for style of include used by $am_make... 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" >&6; } +if test "${ac_cv_f77_compiler_gnu+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main +#ifndef __GNUC__ + choke me +#endif + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_compiler_gnu=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_compiler_gnu=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext +ac_cv_f77_compiler_gnu=$ac_compiler_gnu + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_compiler_gnu" >&5 +$as_echo "$ac_cv_f77_compiler_gnu" >&6; } +ac_ext=$ac_save_ext +ac_test_FFLAGS=${FFLAGS+set} +ac_save_FFLAGS=$FFLAGS +FFLAGS= +{ $as_echo "$as_me:$LINENO: checking whether $F77 accepts -g" >&5 +$as_echo_n "checking whether $F77 accepts -g... " >&6; } +if test "${ac_cv_prog_f77_g+set}" = set; then + $as_echo_n "(cached) " >&6 +else + FFLAGS=-g +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_g=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_prog_f77_g=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_g" >&5 +$as_echo "$ac_cv_prog_f77_g" >&6; } +if test "$ac_test_FFLAGS" = set; then + FFLAGS=$ac_save_FFLAGS +elif test $ac_cv_prog_f77_g = yes; then + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-g -O2" + else + FFLAGS="-g" + fi +else + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-O2" + else + FFLAGS= + fi +fi + +if test $ac_compiler_gnu = yes; then + G77=yes +else + G77= +fi +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +ac_ext=f +ac_compile='$F77 -c $FFLAGS conftest.$ac_ext >&5' +ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_f77_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to get verbose linking output from $F77" >&5 +$as_echo_n "checking how to get verbose linking output from $F77... " >&6; } +if test "${ac_cv_prog_f77_v+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_v= +# Try some options frequently used verbose output +for ac_verb in -v -verbose --verbose -V -\#\#\#; do + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_verb" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + # look for -l* and *.a constructs in the output + for ac_arg in $ac_f77_v_output; do + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a | -[lLRu]*) + ac_cv_prog_f77_v=$ac_verb + break 2 ;; + esac + done +done +if test -z "$ac_cv_prog_f77_v"; then + { $as_echo "$as_me:$LINENO: WARNING: cannot determine how to obtain linking information from $F77" >&5 +$as_echo "$as_me: WARNING: cannot determine how to obtain linking information from $F77" >&2;} +fi +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: WARNING: compilation failed" >&5 +$as_echo "$as_me: WARNING: compilation failed" >&2;} +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_v" >&5 +$as_echo "$ac_cv_prog_f77_v" >&6; } +{ $as_echo "$as_me:$LINENO: checking for Fortran 77 libraries of $F77" >&5 +$as_echo_n "checking for Fortran 77 libraries of $F77... " >&6; } +if test "${ac_cv_f77_libs+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "x$FLIBS" != "x"; then + ac_cv_f77_libs="$FLIBS" # Let the user override the test. +else + +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_cv_prog_f77_v" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + +ac_cv_f77_libs= + +# Save positional arguments (if any) +ac_save_positional="$@" + +set X $ac_f77_v_output +while test $@%:@ != 1; do + shift + ac_arg=$1 + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -bI:*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_arg; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi +fi + + ;; + # Ignore these flags. + -lang* | -lcrt*.o | -lc | -lgcc* | -lSystem | -libmil | -LANG:=* | -LIST:* | -LNO:*) + ;; + -lkernel32) + test x"$CYGWIN" != xyes && ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + -[LRuYz]) + # These flags, when seen by themselves, take an argument. + # We remove the space between option and argument and re-iterate + # unless we find an empty arg or a new option (starting with -) + case $2 in + "" | -*);; + *) + ac_arg="$ac_arg$2" + shift; shift + set X $ac_arg "$@" + ;; + esac + ;; + -YP,*) + for ac_j in `$as_echo "$ac_arg" | sed -e 's/-YP,/-L/;s/:/ -L/g'`; do + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_j" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_arg="$ac_arg $ac_j" + ac_cv_f77_libs="$ac_cv_f77_libs $ac_j" +fi + + done + ;; + -[lLR]*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -zallextract*| -zdefaultextract) + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + # Ignore everything else. + esac +done +# restore positional arguments +set X $ac_save_positional; shift + +# We only consider "LD_RUN_PATH" on Solaris systems. If this is seen, +# then we insist that the "run path" must be an absolute path (i.e. it +# must begin with a "/"). +case `(uname -sr) 2>/dev/null` in + "SunOS 5"*) + ac_ld_run_path=`$as_echo "$ac_f77_v_output" | + sed -n 's,^.*LD_RUN_PATH *= *\(/[^ ]*\).*$,-R\1,p'` + test "x$ac_ld_run_path" != x && + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_ld_run_path; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_ld_run_path" +fi + ;; +esac +fi # test "x$[]_AC_LANG_PREFIX[]LIBS" = "x" + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_libs" >&5 +$as_echo "$ac_cv_f77_libs" >&6; } +FLIBS="$ac_cv_f77_libs" + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + +if test "x$CC" != xcc; then + { $as_echo "$as_me:$LINENO: checking whether $CC and cc understand -c and -o together" >&5 +$as_echo_n "checking whether $CC and cc understand -c and -o together... " >&6; } +else + { $as_echo "$as_me:$LINENO: checking whether cc understands -c and -o together" >&5 +$as_echo_n "checking whether cc understands -c and -o together... " >&6; } +fi +set dummy $CC; ac_cc=`$as_echo "$2" | + sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +if { as_var=ac_cv_prog_cc_${ac_cc}_c_o; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +# Make sure it works both with $CC and with simple cc. +# We do the test twice because some compilers refuse to overwrite an +# existing .o file with -o, though they will create one. +ac_try='$CC -c conftest.$ac_ext -o conftest2.$ac_objext >&5' +rm -f conftest2.* +if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; +then + eval ac_cv_prog_cc_${ac_cc}_c_o=yes + if test "x$CC" != xcc; then + # Test first that cc exists at all. + if { ac_try='cc -c conftest.$ac_ext >&5' + { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; }; then + ac_try='cc -c conftest.$ac_ext -o conftest2.$ac_objext >&5' + rm -f conftest2.* + if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; + then + # cc works too. + : + else + # cc exists but doesn't like -o. + eval ac_cv_prog_cc_${ac_cc}_c_o=no + fi + fi + fi +else + eval ac_cv_prog_cc_${ac_cc}_c_o=no +fi +rm -f core conftest* + +fi +if eval test \$ac_cv_prog_cc_${ac_cc}_c_o = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + +cat >>confdefs.h <<\_ACEOF +@%:@define NO_MINUS_C_MINUS_O 1 +_ACEOF + +fi + +# FIXME: we rely on the cache variable name because +# there is no other way. +set dummy $CC +am_cc=`echo $2 | sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +eval am_t=\$ac_cv_prog_cc_${am_cc}_c_o +if test "$am_t" != yes; then + # Losing compiler, so override with the script. + # FIXME: It is wrong to rewrite CC. + # But if we don't then we get into trouble of one sort or another. + # A longer-term fix would be to have automake use am__CC in this case, + # and then we could set am__CC="\$(top_srcdir)/compile \$(CC)" + CC="$am_aux_dir/compile $CC" +fi + + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5 +$as_echo_n "checking how to run the C preprocessor... " >&6; } +# On Suns, sometimes $CPP names a directory. +if test -n "$CPP" && test -d "$CPP"; then + CPP= +fi +if test -z "$CPP"; then + if test "${ac_cv_prog_CPP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # Double quotes because CPP needs to be expanded + for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp" + do + ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@ifdef __STDC__ +@%:@ include +@%:@else +@%:@ include +@%:@endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + break +fi + + done + ac_cv_prog_CPP=$CPP + +fi + CPP=$ac_cv_prog_CPP +else + ac_cv_prog_CPP=$CPP +fi +{ $as_echo "$as_me:$LINENO: result: $CPP" >&5 +$as_echo "$CPP" >&6; } +ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@ifdef __STDC__ +@%:@ include +@%:@else +@%:@ include +@%:@endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + : +else + { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +{ $as_echo "$as_me:$LINENO: checking for X" >&5 +$as_echo_n "checking for X... " >&6; } + + +@%:@ Check whether --with-x was given. +if test "${with_x+set}" = set; then + withval=$with_x; +fi + +# $have_x is `yes', `no', `disabled', or empty when we do not yet know. +if test "x$with_x" = xno; then + # The user explicitly disabled X. + have_x=disabled +else + case $x_includes,$x_libraries in #( + *\'*) { { $as_echo "$as_me:$LINENO: error: cannot use X directory names containing '" >&5 +$as_echo "$as_me: error: cannot use X directory names containing '" >&2;} + { (exit 1); exit 1; }; };; #( + *,NONE | NONE,*) if test "${ac_cv_have_x+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # One or both of the vars are not set, and there is no cached value. +ac_x_includes=no ac_x_libraries=no +rm -f -r conftest.dir +if mkdir conftest.dir; then + cd conftest.dir + cat >Imakefile <<'_ACEOF' +incroot: + @echo incroot='${INCROOT}' +usrlibdir: + @echo usrlibdir='${USRLIBDIR}' +libdir: + @echo libdir='${LIBDIR}' +_ACEOF + if (export CC; ${XMKMF-xmkmf}) >/dev/null 2>/dev/null && test -f Makefile; then + # GNU make sometimes prints "make[1]: Entering...", which would confuse us. + for ac_var in incroot usrlibdir libdir; do + eval "ac_im_$ac_var=\`\${MAKE-make} $ac_var 2>/dev/null | sed -n 's/^$ac_var=//p'\`" + done + # Open Windows xmkmf reportedly sets LIBDIR instead of USRLIBDIR. + for ac_extension in a so sl dylib la dll; do + if test ! -f "$ac_im_usrlibdir/libX11.$ac_extension" && + test -f "$ac_im_libdir/libX11.$ac_extension"; then + ac_im_usrlibdir=$ac_im_libdir; break + fi + done + # Screen out bogus values from the imake configuration. They are + # bogus both because they are the default anyway, and because + # using them would break gcc on systems where it needs fixed includes. + case $ac_im_incroot in + /usr/include) ac_x_includes= ;; + *) test -f "$ac_im_incroot/X11/Xos.h" && ac_x_includes=$ac_im_incroot;; + esac + case $ac_im_usrlibdir in + /usr/lib | /usr/lib64 | /lib | /lib64) ;; + *) test -d "$ac_im_usrlibdir" && ac_x_libraries=$ac_im_usrlibdir ;; + esac + fi + cd .. + rm -f -r conftest.dir +fi + +# Standard set of common directories for X headers. +# Check X11 before X11Rn because it is often a symlink to the current release. +ac_x_header_dirs=' +/usr/X11/include +/usr/X11R6/include +/usr/X11R5/include +/usr/X11R4/include + +/usr/include/X11 +/usr/include/X11R6 +/usr/include/X11R5 +/usr/include/X11R4 + +/usr/local/X11/include +/usr/local/X11R6/include +/usr/local/X11R5/include +/usr/local/X11R4/include + +/usr/local/include/X11 +/usr/local/include/X11R6 +/usr/local/include/X11R5 +/usr/local/include/X11R4 + +/usr/X386/include +/usr/x386/include +/usr/XFree86/include/X11 + +/usr/include +/usr/local/include +/usr/unsupported/include +/usr/athena/include +/usr/local/x11r5/include +/usr/lpp/Xamples/include + +/usr/openwin/include +/usr/openwin/share/include' + +if test "$ac_x_includes" = no; then + # Guess where to find include files, by looking for Xlib.h. + # First, try using that file with no special directory specified. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # We can compile using X headers with no special include directory. +ac_x_includes= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + for ac_dir in $ac_x_header_dirs; do + if test -r "$ac_dir/X11/Xlib.h"; then + ac_x_includes=$ac_dir + break + fi +done +fi + +rm -f conftest.err conftest.$ac_ext +fi # $ac_x_includes = no + +if test "$ac_x_libraries" = no; then + # Check for the libraries. + # See if we find them without any special options. + # Don't add to $LIBS permanently. + ac_save_LIBS=$LIBS + LIBS="-lX11 $LIBS" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +int +main () +{ +XrmInitialize () + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + LIBS=$ac_save_LIBS +# We can link X programs with no special library path. +ac_x_libraries= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS=$ac_save_LIBS +for ac_dir in `$as_echo "$ac_x_includes $ac_x_header_dirs" | sed s/include/lib/g` +do + # Don't even attempt the hair of trying to link an X program! + for ac_extension in a so sl dylib la dll; do + if test -r "$ac_dir/libX11.$ac_extension"; then + ac_x_libraries=$ac_dir + break 2 + fi + done +done +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi # $ac_x_libraries = no + +case $ac_x_includes,$ac_x_libraries in #( + no,* | *,no | *\'*) + # Didn't find X, or a directory has "'" in its name. + ac_cv_have_x="have_x=no";; #( + *) + # Record where we found X for the cache. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$ac_x_includes'\ + ac_x_libraries='$ac_x_libraries'" +esac +fi +;; #( + *) have_x=yes;; + esac + eval "$ac_cv_have_x" +fi # $with_x != no + +if test "$have_x" != yes; then + { $as_echo "$as_me:$LINENO: result: $have_x" >&5 +$as_echo "$have_x" >&6; } + no_x=yes +else + # If each of the values was on the command line, it overrides each guess. + test "x$x_includes" = xNONE && x_includes=$ac_x_includes + test "x$x_libraries" = xNONE && x_libraries=$ac_x_libraries + # Update the cache value to reflect the command line values. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$x_includes'\ + ac_x_libraries='$x_libraries'" + { $as_echo "$as_me:$LINENO: result: libraries $x_libraries, headers $x_includes" >&5 +$as_echo "libraries $x_libraries, headers $x_includes" >&6; } +fi + +if test "$no_x" = yes; then + # Not all programs may use this symbol, but it does not hurt to define it. + +cat >>confdefs.h <<\_ACEOF +@%:@define X_DISPLAY_MISSING 1 +_ACEOF + + X_CFLAGS= X_PRE_LIBS= X_LIBS= X_EXTRA_LIBS= +else + if test -n "$x_includes"; then + X_CFLAGS="$X_CFLAGS -I$x_includes" + fi + + # It would also be nice to do this for all -L options, not just this one. + if test -n "$x_libraries"; then + X_LIBS="$X_LIBS -L$x_libraries" + # For Solaris; some versions of Sun CC require a space after -R and + # others require no space. Words are not sufficient . . . . + { $as_echo "$as_me:$LINENO: checking whether -R must be followed by a space" >&5 +$as_echo_n "checking whether -R must be followed by a space... " >&6; } + ac_xsave_LIBS=$LIBS; LIBS="$LIBS -R$x_libraries" + ac_xsave_c_werror_flag=$ac_c_werror_flag + ac_c_werror_flag=yes + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + X_LIBS="$X_LIBS -R$x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS="$ac_xsave_LIBS -R $x_libraries" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + X_LIBS="$X_LIBS -R $x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: result: neither works" >&5 +$as_echo "neither works" >&6; } +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + ac_c_werror_flag=$ac_xsave_c_werror_flag + LIBS=$ac_xsave_LIBS + fi + + # Check for system-dependent libraries X programs must link with. + # Do this before checking for the system-independent R6 libraries + # (-lICE), since we may need -lsocket or whatever for X linking. + + if test "$ISC" = yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl_s -linet" + else + # Martyn Johnson says this is needed for Ultrix, if the X + # libraries were built with DECnet support. And Karl Berry says + # the Alpha needs dnet_stub (dnet does not exist). + ac_xsave_LIBS="$LIBS"; LIBS="$LIBS $X_LIBS -lX11" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char XOpenDisplay (); +int +main () +{ +return XOpenDisplay (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet... " >&6; } +if test "${ac_cv_lib_dnet_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet" +fi + + if test $ac_cv_lib_dnet_dnet_ntoa = no; then + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet_stub" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet_stub... " >&6; } +if test "${ac_cv_lib_dnet_stub_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet_stub $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_stub_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_stub_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_stub_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_stub_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet_stub" +fi + + fi +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + LIBS="$ac_xsave_LIBS" + + # msh@cis.ufl.edu says -lnsl (and -lsocket) are needed for his 386/AT, + # to get the SysV transport functions. + # Chad R. Larson says the Pyramis MIS-ES running DC/OSx (SVR4) + # needs -lnsl. + # The nsl library prevents programs from opening the X display + # on Irix 5.2, according to T.E. Dickey. + # The functions gethostbyname, getservbyname, and inet_addr are + # in -lbsd on LynxOS 3.0.1/i386, according to Lars Hecking. + { $as_echo "$as_me:$LINENO: checking for gethostbyname" >&5 +$as_echo_n "checking for gethostbyname... " >&6; } +if test "${ac_cv_func_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define gethostbyname to an innocuous variant, in case declares gethostbyname. + For example, HP-UX 11i declares gettimeofday. */ +#define gethostbyname innocuous_gethostbyname + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char gethostbyname (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef gethostbyname + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_gethostbyname || defined __stub___gethostbyname +choke me +#endif + +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_gethostbyname" >&5 +$as_echo "$ac_cv_func_gethostbyname" >&6; } + + if test $ac_cv_func_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5 +$as_echo_n "checking for gethostbyname in -lnsl... " >&6; } +if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lnsl $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_nsl_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_nsl_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5 +$as_echo "$ac_cv_lib_nsl_gethostbyname" >&6; } +if test "x$ac_cv_lib_nsl_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl" +fi + + if test $ac_cv_lib_nsl_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lbsd" >&5 +$as_echo_n "checking for gethostbyname in -lbsd... " >&6; } +if test "${ac_cv_lib_bsd_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lbsd $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_bsd_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_bsd_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_bsd_gethostbyname" >&5 +$as_echo "$ac_cv_lib_bsd_gethostbyname" >&6; } +if test "x$ac_cv_lib_bsd_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lbsd" +fi + + fi + fi + + # lieder@skyler.mavd.honeywell.com says without -lsocket, + # socket/setsockopt and other routines are undefined under SCO ODT + # 2.0. But -lsocket is broken on IRIX 5.2 (and is not necessary + # on later versions), says Simon Leinen: it contains gethostby* + # variants that don't use the name server (or something). -lsocket + # must be given before -lnsl if both are needed. We assume that + # if connect needs -lnsl, so does gethostbyname. + { $as_echo "$as_me:$LINENO: checking for connect" >&5 +$as_echo_n "checking for connect... " >&6; } +if test "${ac_cv_func_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define connect to an innocuous variant, in case declares connect. + For example, HP-UX 11i declares gettimeofday. */ +#define connect innocuous_connect + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char connect (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef connect + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_connect || defined __stub___connect +choke me +#endif + +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_connect" >&5 +$as_echo "$ac_cv_func_connect" >&6; } + + if test $ac_cv_func_connect = no; then + { $as_echo "$as_me:$LINENO: checking for connect in -lsocket" >&5 +$as_echo_n "checking for connect in -lsocket... " >&6; } +if test "${ac_cv_lib_socket_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lsocket $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_socket_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_socket_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5 +$as_echo "$ac_cv_lib_socket_connect" >&6; } +if test "x$ac_cv_lib_socket_connect" = x""yes; then + X_EXTRA_LIBS="-lsocket $X_EXTRA_LIBS" +fi + + fi + + # Guillermo Gomez says -lposix is necessary on A/UX. + { $as_echo "$as_me:$LINENO: checking for remove" >&5 +$as_echo_n "checking for remove... " >&6; } +if test "${ac_cv_func_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define remove to an innocuous variant, in case declares remove. + For example, HP-UX 11i declares gettimeofday. */ +#define remove innocuous_remove + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char remove (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef remove + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_remove || defined __stub___remove +choke me +#endif + +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_remove" >&5 +$as_echo "$ac_cv_func_remove" >&6; } + + if test $ac_cv_func_remove = no; then + { $as_echo "$as_me:$LINENO: checking for remove in -lposix" >&5 +$as_echo_n "checking for remove in -lposix... " >&6; } +if test "${ac_cv_lib_posix_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lposix $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_posix_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_posix_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_posix_remove" >&5 +$as_echo "$ac_cv_lib_posix_remove" >&6; } +if test "x$ac_cv_lib_posix_remove" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lposix" +fi + + fi + + # BSDI BSD/OS 2.1 needs -lipc for XOpenDisplay. + { $as_echo "$as_me:$LINENO: checking for shmat" >&5 +$as_echo_n "checking for shmat... " >&6; } +if test "${ac_cv_func_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define shmat to an innocuous variant, in case declares shmat. + For example, HP-UX 11i declares gettimeofday. */ +#define shmat innocuous_shmat + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char shmat (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef shmat + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_shmat || defined __stub___shmat +choke me +#endif + +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_shmat" >&5 +$as_echo "$ac_cv_func_shmat" >&6; } + + if test $ac_cv_func_shmat = no; then + { $as_echo "$as_me:$LINENO: checking for shmat in -lipc" >&5 +$as_echo_n "checking for shmat in -lipc... " >&6; } +if test "${ac_cv_lib_ipc_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lipc $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ipc_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ipc_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ipc_shmat" >&5 +$as_echo "$ac_cv_lib_ipc_shmat" >&6; } +if test "x$ac_cv_lib_ipc_shmat" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc" +fi + + fi + fi + + # Check for libraries that X11R6 Xt/Xaw programs need. + ac_save_LDFLAGS=$LDFLAGS + test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries" + # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to + # check for ICE first), but we must link in the order -lSM -lICE or + # we get undefined symbols. So assume we have SM if we have ICE. + # These have to be linked with before -lX11, unlike the other + # libraries we check for below, so use a different variable. + # John Interrante, Karl Berry + { $as_echo "$as_me:$LINENO: checking for IceConnectionNumber in -lICE" >&5 +$as_echo_n "checking for IceConnectionNumber in -lICE... " >&6; } +if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lICE $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char IceConnectionNumber (); +int +main () +{ +return IceConnectionNumber (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ICE_IceConnectionNumber=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ICE_IceConnectionNumber=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5 +$as_echo "$ac_cv_lib_ICE_IceConnectionNumber" >&6; } +if test "x$ac_cv_lib_ICE_IceConnectionNumber" = x""yes; then + X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE" +fi + + LDFLAGS=$ac_save_LDFLAGS + +fi + + +ax_enable_matlab= + +@%:@ Check whether --with-matlab-dir was given. +if test "${with_matlab_dir+set}" = set; then + withval=$with_matlab_dir; case $withval in + yes | no) + # Explicitly enable or disable Matlab but determine + # Matlab prefix automatically. + ax_enable_matlab=$withval + ;; + *) + # Enable Matlab and use ARG as the Matlab prefix. + # ARG must be an existing directory. + ax_enable_matlab=yes + MATLAB=`cd "${withval-/}" > /dev/null 2>&1 && pwd` + if test -z "$MATLAB" ; then + { { $as_echo "$as_me:$LINENO: error: invalid value '$withval' for --with-matlab" >&5 +$as_echo "$as_me: error: invalid value '$withval' for --with-matlab" >&2;} + { (exit 1); exit 1; }; } + fi + ;; +esac +fi + +if test x$ax_enable_matlab != xno ; then +{ $as_echo "$as_me:$LINENO: checking for Matlab prefix" >&5 +$as_echo_n "checking for Matlab prefix... " >&6; } +if test "${ax_cv_matlab+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "${MATLAB+set}" = set ; then + ax_cv_matlab=`cd "${MATLAB-/}" > /dev/null 2>&1 && pwd` +else + ax_cv_matlab= + IFS=${IFS= } ; ax_ifs=$IFS ; IFS=: + for ax_dir in ${PATH-/opt/bin:/usr/local/bin:/usr/bin:/bin} ; do + if test -z "$ax_dir" ; then + ax_dir=. + fi + if test -x "$ax_dir/matlab" ; then + ax_dir=`echo "$ax_dir" | sed 's,/bin$,,'` + # Directory sanity check. + ax_cv_matlab=`cd "${ax_dir-/}" > /dev/null 2>&1 && pwd` + if test -n "$ax_cv_matlab" ; then + break + fi + fi + done + IFS=$ax_ifs +fi +if test -z "$ax_cv_matlab" ; then + ax_cv_matlab="not found" +fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_cv_matlab" >&5 +$as_echo "$ax_cv_matlab" >&6; } +if test "$ax_cv_matlab" = "not found" ; then + unset MATLAB +else + # Strip trailing dashes. + MATLAB=`echo "$ax_cv_matlab" | sed 's,/*$,,'` +fi +{ $as_echo "$as_me:$LINENO: checking whether to enable Matlab support" >&5 +$as_echo_n "checking whether to enable Matlab support... " >&6; } +if test x$ax_enable_matlab != xno ; then + if test "${MATLAB+set}" = set && test -d "$MATLAB/extern/include" ; then + ax_enable_matlab=yes + elif test x$ax_enable_matlab = x ; then + ax_enable_matlab=no + else + # Fail if Matlab was explicitly enabled. + { $as_echo "$as_me:$LINENO: result: failure" >&5 +$as_echo "failure" >&6; } + { { $as_echo "$as_me:$LINENO: error: check your Matlab setup" >&5 +$as_echo "$as_me: error: check your Matlab setup" >&2;} + { (exit 1); exit 1; }; } + fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_enable_matlab" >&5 +$as_echo "$ax_enable_matlab" >&6; } +if test x$ax_enable_matlab = xyes ; then + +cat >>confdefs.h <<\_ACEOF +@%:@define HAVE_MATLAB 1 +_ACEOF + +fi +fi + + + + @%:@ Check whether --enable-debugging was given. +if test "${enable_debugging+set}" = set; then + enableval=$enable_debugging; enable_debugging=$enableval +else + enable_debugging=no +fi + + if test "x$enable_debugging" = xyes; then + +cat >>confdefs.h <<\_ACEOF +@%:@define _DEBUG_ 1 +_ACEOF + + fi + + +@%:@ Check whether --with-serial was given. +if test "${with_serial+set}" = set; then + withval=$with_serial; SERIAL_VALUE=$withval +else + SERIAL_VALUE="yes" +fi + + { $as_echo "$as_me:$LINENO: checking for serial compilation" >&5 +$as_echo_n "checking for serial compilation... " >&6; } + if test $SERIAL_VALUE = no; then + NOSERIAL_TRUE= + NOSERIAL_FALSE='#' +else + NOSERIAL_TRUE='#' + NOSERIAL_FALSE= +fi + + { $as_echo "$as_me:$LINENO: result: $SERIAL_VALUE" >&5 +$as_echo "$SERIAL_VALUE" >&6; } + + + +@%:@ Check whether --with-parallel was given. +if test "${with_parallel+set}" = set; then + withval=$with_parallel; PARALLEL_VALUE=$withval +else + PARALLEL_VALUE="yes" +fi + + { $as_echo "$as_me:$LINENO: checking for parallel compilation" >&5 +$as_echo_n "checking for parallel compilation... " >&6; } + if test $PARALLEL_VALUE = no; then + NOPARALLEL_TRUE= + NOPARALLEL_FALSE='#' +else + NOPARALLEL_TRUE='#' + NOPARALLEL_FALSE= +fi + + { $as_echo "$as_me:$LINENO: result: $PARALLEL_VALUE" >&5 +$as_echo "$PARALLEL_VALUE" >&6; } + + if test "$SERIAL_VALUE" != "yes" ; then + if test "$PARALLEL_VALUE" != "yes"; then + { { $as_echo "$as_me:$LINENO: error: cannot request --with-serial=no and --with-parallel=no at the same time!" >&5 +$as_echo "$as_me: error: cannot request --with-serial=no and --with-parallel=no at the same time!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + + +@%:@ Check whether --with-matlab-dir was given. +if test "${with_matlab_dir+set}" = set; then + withval=$with_matlab_dir; MATLAB_ROOT=$withval +else + MATLAB_ROOT="" +fi + + + if test -d "$MATLAB_ROOT"; then + + { $as_echo "$as_me:$LINENO: checking for Matlab headers and libraries in $MATLAB_ROOT" >&5 +$as_echo_n "checking for Matlab headers and libraries in $MATLAB_ROOT... " >&6; } + + HAVE_MATLAB=yes + MATLABINCL=-I"$MATLAB_ROOT/extern/include"; + MEXEXT=`$MATLAB_ROOT/bin/mexext` + MEXEXT=".$MEXEXT" + MEX=$MATLAB_ROOT/bin/mex + + case "${host_os}" in + *linux*) + if test "${host_cpu}" = "x86_64"; + then + MEXLIB=-L"$MATLAB_ROOT/bin/glnxa64/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnxa64/mexFunction.map"; + else + MEXLIB=-L"$MATLAB_ROOT/bin/glnx86/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnx86/mexFunction.map"; + fi + ;; + esac + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_MATLAB_ 1 +_ACEOF + + + + + + + + { $as_echo "$as_me:$LINENO: result: $HAVE_MATLAB" >&5 +$as_echo "$HAVE_MATLAB" >&6; } + else + HAVE_MATLAB=no + fi + + + if test $HAVE_MATLAB = no; then + if test "$SERIAL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: --with-matlab-dir missing. Matlab is needed to run ISSM serially!" >&5 +$as_echo "$as_me: error: --with-matlab-dir missing. Matlab is needed to run ISSM serially!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + if test $HAVE_MATLAB = yes; then + + + + +{ $as_echo "$as_me:$LINENO: checking for Matlab version" >&5 +$as_echo_n "checking for Matlab version... " >&6; } +if test "${ax_cv_matlab_version+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "${MATLAB_VERSION+set}" = set ; then + ax_cv_matlab_version=$MATLAB_VERSION +else + ax_cv_matlab_version= + # Loop over all known architectures. The final dot covers + # Matlab R11 and Matlab V4 for Windows. + for ax_arch in alpha glnxa64 glnx86 hp700 hpux ibm_rs sgi sol2 win32 mac maci . ; do + for ax_exec_name in matlab$EXEEXT MATLAB ; do + ax_matlab_exec=$MATLAB/bin/$ax_arch/${ax_exec_name} + if test -f $ax_matlab_exec ; then + # For Matlab R12, the version number is stored in a + # shared library. + ax_matlab_exec_2=`find $MATLAB/bin/$ax_arch -type f -name libmwservices\* -print 2> /dev/null` + if test -n "$ax_matlab_exec_2" ; then + ax_cv_matlab_version=`strings $ax_matlab_exec_2 2> /dev/null | egrep '^\|build_version_\|@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^|build_version_|\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + # For Matlab R11 and Matlab V4, the version number + # is stored in the executable program. + ax_cv_matlab_version=`strings $ax_matlab_exec 2> /dev/null | egrep '^@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + done + if test -n "$ax_cv_matlab_version" ; then + break + fi + done + if test -z "$ax_cv_matlab_version" ; then + ax_cv_matlab_version="not found" + fi +fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_cv_matlab_version" >&5 +$as_echo "$ax_cv_matlab_version" >&6; } +case $ax_cv_matlab_version in + @<:@1-9@:>@.@<:@0-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@.@<:@0-9@:>@) + MATLAB_VERSION=$ax_cv_matlab_version + MATLAB_MAJOR=`echo $MATLAB_VERSION | sed -e 's/^\(@<:@0-9@:>@*\)\.@<:@0-9@:>@*.*/\1/'` + MATLAB_MINOR=`echo $MATLAB_VERSION | sed -e 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` + ;; + *) + if test x$ax_enable_matlab = xyes ; then + { { $as_echo "$as_me:$LINENO: error: can not determine Matlab version number" >&5 +$as_echo "$as_me: error: can not determine Matlab version number" >&2;} + { (exit 1); exit 1; }; } + fi + MATLAB_VERSION= + MATLAB_MAJOR= + MATLAB_MINOR= + ;; +esac + + + +if test x$MATLAB_VERSION != x ; then + +cat >>confdefs.h <<_ACEOF +@%:@define MATLAB_MAJOR $MATLAB_MAJOR +_ACEOF + + +cat >>confdefs.h <<_ACEOF +@%:@define MATLAB_MINOR $MATLAB_MINOR +_ACEOF + +fi + + + largearrays=no + if test $MATLAB_MAJOR -ge 7; then + if test $MATLAB_MINOR -ge 5; then + if test "${host_cpu}" = "x86_64"; then + largearrays=yes + fi + fi + fi + fi + if test x$largearrays = xyes; then + LARGEARRAYS_TRUE= + LARGEARRAYS_FALSE='#' +else + LARGEARRAYS_TRUE='#' + LARGEARRAYS_FALSE= +fi + + + +@%:@ Check whether --with-triangle-dir was given. +if test "${with_triangle_dir+set}" = set; then + withval=$with_triangle_dir; TRIANGLE_ROOT=$withval +else + TRIANGLE_ROOT="" +fi + + { $as_echo "$as_me:$LINENO: checking for Triangle headers and libraries " >&5 +$as_echo_n "checking for Triangle headers and libraries ... " >&6; } + if test -d "$TRIANGLE_ROOT"; then + + + HAVE_TRIANGLE=yes + TRIANGLEINCL=-I$TRIANGLE_ROOT/ + TRIANGLELIB=$TRIANGLE_ROOT/triangle.a + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_TRIANGLE_ 1 +_ACEOF + + + + + else + HAVE_TRIANGLE=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_TRIANGLE" >&5 +$as_echo "$HAVE_TRIANGLE" >&6; } + + { $as_echo "$as_me:$LINENO: checking for triangle and parallel status" >&5 +$as_echo_n "checking for triangle and parallel status... " >&6; } + if test $HAVE_TRIANGLE = no; then + if test "$SERIAL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: --with-triangle-dir missing. Triangle is needed to run ISSM serially!" >&5 +$as_echo "$as_me: error: --with-triangle-dir missing. Triangle is needed to run ISSM serially!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + { $as_echo "$as_me:$LINENO: result: ok" >&5 +$as_echo "ok" >&6; } + + + +@%:@ Check whether --with-metis-dir was given. +if test "${with_metis_dir+set}" = set; then + withval=$with_metis_dir; METIS_ROOT=$withval +else + METIS_ROOT="" +fi + + + if test -d "$METIS_ROOT"; then + + { $as_echo "$as_me:$LINENO: checking for Metis headers and libraries in $METIS_ROOT" >&5 +$as_echo_n "checking for Metis headers and libraries in $METIS_ROOT... " >&6; } + + HAVE_METIS=yes + METISINCL=-I"$METIS_ROOT/Lib" + METISLIB=-L"$METIS_ROOT/ -lmetis" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_METIS_ 1 +_ACEOF + + + + else + HAVE_METIS=no + fi + + if test $HAVE_METIS = no; then + { { $as_echo "$as_me:$LINENO: error: --with-metis-dir missing. Metis is needed to run ISSM" >&5 +$as_echo "$as_me: error: --with-metis-dir missing. Metis is needed to run ISSM" >&2;} + { (exit 1); exit 1; }; }; + else + { $as_echo "$as_me:$LINENO: result: $HAVE_METIS" >&5 +$as_echo "$HAVE_METIS" >&6; } + fi + + { $as_echo "$as_me:$LINENO: checking for mpi..." >&5 +$as_echo_n "checking for mpi...... " >&6; } + +@%:@ Check whether --with-mpi-lib was given. +if test "${with_mpi_lib+set}" = set; then + withval=$with_mpi_lib; MPILIB=$withval +else + MPILIB="" +fi + + + +@%:@ Check whether --with-mpi-include was given. +if test "${with_mpi_include+set}" = set; then + withval=$with_mpi_include; MPI_INCLUDE=$withval +else + MPI_INCLUDE="" +fi + + + if test -z "$MPILIB" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: empty --with-mpi-lib options! MPI is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: empty --with-mpi-lib options! MPI is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + if test -z "$MPI_INCLUDE" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: empty --with-mpi-include directory! MPI is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: empty --with-mpi-include directory! MPI is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + HAVE_MPI=yes + MPIINCL=-I"$MPI_INCLUDE/" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_MPI_ 1 +_ACEOF + + + + fi + fi + { $as_echo "$as_me:$LINENO: result: done" >&5 +$as_echo "done" >&6; } + + +@%:@ Check whether --with-petsc-dir was given. +if test "${with_petsc_dir+set}" = set; then + withval=$with_petsc_dir; PETSC_ROOT=$withval +else + PETSC_ROOT="" +fi + + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ROOT" = "" ; then + { { $as_echo "$as_me:$LINENO: error: missing --with-petsc-dir argument for parallel compilation!" >&5 +$as_echo "$as_me: error: missing --with-petsc-dir argument for parallel compilation!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + +@%:@ Check whether --with-petsc-arch was given. +if test "${with_petsc_arch+set}" = set; then + withval=$with_petsc_arch; PETSC_ARCH=$withval +else + PETSC_ARCH="" +fi + + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ARCH" = "" ; then + { { $as_echo "$as_me:$LINENO: error: missing --with-petsc-arch argument for parallel compilation!" >&5 +$as_echo "$as_me: error: missing --with-petsc-arch argument for parallel compilation!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + { $as_echo "$as_me:$LINENO: checking for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH" >&5 +$as_echo_n "checking for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH... " >&6; } + + if test -d "$PETSC_ROOT"; then + + if test -d "$PETSC_ROOT/bmake/$PETSC_ARCH"; then + + PETSCINCL="-I$PETSC_ROOT/include -I$PETSC_ROOT/ -I$PETSC_ROOT/bmake/$PETSC_ARCH -I$PETSC_ROOT/src/mat/impls/dense/mpi/plapack/" + PETSCLIB="-L$PETSC_ROOT/lib/$PETSC_ARCH -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts" + + + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_PETSC_ 1 +_ACEOF + + + + + HAVE_PETSC=yes + else + HAVE_PETSC=no + fi + else + HAVE_PETSC=no + fi + + if test $HAVE_PETSC = no; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + { $as_echo "$as_me:$LINENO: result: $HAVE_PETSC" >&5 +$as_echo "$HAVE_PETSC" >&6; } + fi + + + +@%:@ Check whether --with-slepc-dir was given. +if test "${with_slepc_dir+set}" = set; then + withval=$with_slepc_dir; SLEPC_ROOT=$withval +else + SLEPC_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Slepc headers and libraries in $SLEPC_ROOT" >&5 +$as_echo_n "checking for Slepc headers and libraries in $SLEPC_ROOT... " >&6; } + if test -d "$SLEPC_ROOT"; then + + + HAVE_SLEPC=yes + SLEPCINCL=-I"$SLEPC_ROOT/include" + SLEPCLIB=-L"$SLEPC_ROOT/lib/ -lslepc" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_SLEPC_ 1 +_ACEOF + + + + else + HAVE_SLEPC=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_SLEPC" >&5 +$as_echo "$HAVE_SLEPC" >&6; } + + +@%:@ Check whether --with-scalapack-dir was given. +if test "${with_scalapack_dir+set}" = set; then + withval=$with_scalapack_dir; SCALAPACK_ROOT=$withval +else + SCALAPACK_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Scalapack headers and libraries in $SCALAPACK_ROOT" >&5 +$as_echo_n "checking for Scalapack headers and libraries in $SCALAPACK_ROOT... " >&6; } + if test -d "$SCALAPACK_ROOT"; then + + + HAVE_SCALAPACK=yes + SCALAPACKLIB=-L"$SCALAPACK_ROOT/ -lscalapack" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_SCALAPACK_ 1 +_ACEOF + + + else + HAVE_SCALAPACK=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_SCALAPACK" >&5 +$as_echo "$HAVE_SCALAPACK" >&6; } + + +@%:@ Check whether --with-blas-lapack-dir was given. +if test "${with_blas_lapack_dir+set}" = set; then + withval=$with_blas_lapack_dir; BLASLAPACK_ROOT=$withval +else + BLASLAPACK_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Blas and Lapack headers and libraries in $BLASLAPACK_ROOT" >&5 +$as_echo_n "checking for Blas and Lapack headers and libraries in $BLASLAPACK_ROOT... " >&6; } + if test -d "$BLASLAPACK_ROOT"; then + + + HAVE_BLASLAPACK=yes + BLASLAPACKINCL="" + BLASLAPACKLIB=-L"$BLASLAPACK_ROOT -lmkl_lapack -lmkl -lguide" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_BLASLAPACK_ 1 +_ACEOF + + + + else + HAVE_BLASLAPACK=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_BLASLAPACK" >&5 +$as_echo "$HAVE_BLASLAPACK" >&6; } + + + +@%:@ Check whether --with-plapack-dir was given. +if test "${with_plapack_dir+set}" = set; then + withval=$with_plapack_dir; PLAPACK_ROOT=$withval +else + PLAPACK_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Plapack headers and libraries in $PLAPACK_ROOT" >&5 +$as_echo_n "checking for Plapack headers and libraries in $PLAPACK_ROOT... " >&6; } + if test -d "$PLAPACK_ROOT"; then + + + HAVE_PLAPACK=yes + PLAPACKINCL=-I"$PLAPACK_ROOT/INCLUDE" + PLAPACKLIB=-L"$PLAPACK_ROOT/ -lPLAPACK" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_PLAPACK_ 1 +_ACEOF + + + + else + HAVE_PLAPACK=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_PLAPACK" >&5 +$as_echo "$HAVE_PLAPACK" >&6; } + + +@%:@ Check whether --with-mumps-dir was given. +if test "${with_mumps_dir+set}" = set; then + withval=$with_mumps_dir; MUMPS_ROOT=$withval +else + MUMPS_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Mumps headers and libraries in $MUMPS_ROOT" >&5 +$as_echo_n "checking for Mumps headers and libraries in $MUMPS_ROOT... 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" >&6; } + if test -d "$BLACS_ROOT"; then + + HAVE_BLACS=yes + BLACSINCL="" + BLACSLIB=-L"$BLACS_ROOT/ -lblacs" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_BLACS_ 1 +_ACEOF + + + + else + HAVE_BLACS=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_BLACS" >&5 +$as_echo "$HAVE_BLACS" >&6; } + + + + + +ac_config_files="$ac_config_files Makefile src/Makefile src/c/Makefile src/mex/Makefile bin/Makefile" + +cat >confcache <<\_ACEOF +# This file is a shell script that caches the results of configure +# tests run on this system so they can be shared between configure +# scripts and configure runs, see configure's option --config-cache. +# It is not useful on other systems. 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Don't cache a + # value for MKDIR_P within a source directory, because that will + # break other packages using the cache if that directory is + # removed, or if the value is a relative name. + test -d ./--version && rmdir ./--version + MKDIR_P="$ac_install_sh -d" + fi +fi +{ $as_echo "$as_me:$LINENO: result: $MKDIR_P" >&5 +$as_echo "$MKDIR_P" >&6; } + +mkdir_p="$MKDIR_P" +case $mkdir_p in + [\\/$]* | ?:[\\/]*) ;; + */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;; +esac + +for ac_prog in gawk mawk nawk awk +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... 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" >&6; } +set x ${MAKE-make} +ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'` +if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.make <<\_ACEOF +SHELL = /bin/sh +all: + @echo '@@@%%%=$(MAKE)=@@@%%%' +_ACEOF +# GNU make sometimes prints "make[1]: Entering...", which would confuse us. +case `${MAKE-make} -f conftest.make 2>/dev/null` in + *@@@%%%=?*=@@@%%%*) + eval ac_cv_prog_make_${ac_make}_set=yes;; + *) + eval ac_cv_prog_make_${ac_make}_set=no;; +esac +rm -f conftest.make +fi +if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + SET_MAKE= +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + SET_MAKE="MAKE=${MAKE-make}" +fi + +rm -rf .tst 2>/dev/null +mkdir .tst 2>/dev/null +if test -d .tst; then + am__leading_dot=. +else + am__leading_dot=_ +fi +rmdir .tst 2>/dev/null + +if test "`cd $srcdir && pwd`" != "`pwd`"; then + # Use -I$(srcdir) only when $(srcdir) != ., so that make's output + # is not polluted with repeated "-I." + am__isrc=' -I$(srcdir)' + # test to see if srcdir already configured + if test -f $srcdir/config.status; then + { { $as_echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5 +$as_echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;} + { (exit 1); exit 1; }; } + fi +fi + +# test whether we have cygpath +if test -z "$CYGPATH_W"; then + if (cygpath --version) >/dev/null 2>/dev/null; then + CYGPATH_W='cygpath -w' + else + CYGPATH_W=echo + fi +fi + + +# Define the identity of the package. + PACKAGE='issm' + VERSION='1.0' + + +cat >>confdefs.h <<_ACEOF +@%:@define PACKAGE "$PACKAGE" +_ACEOF + + +cat >>confdefs.h <<_ACEOF +@%:@define VERSION "$VERSION" +_ACEOF + +# Some tools Automake needs. + +ACLOCAL=${ACLOCAL-"${am_missing_run}aclocal-${am__api_version}"} + + +AUTOCONF=${AUTOCONF-"${am_missing_run}autoconf"} + + +AUTOMAKE=${AUTOMAKE-"${am_missing_run}automake-${am__api_version}"} + + +AUTOHEADER=${AUTOHEADER-"${am_missing_run}autoheader"} + + +MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"} + +install_sh=${install_sh-"\$(SHELL) $am_aux_dir/install-sh"} + +# Installed binaries are usually stripped using `strip' when the user +# run `make install-strip'. However `strip' might not be the right +# tool to use in cross-compilation environments, therefore Automake +# will honor the `STRIP' environment variable to overrule this program. +if test "$cross_compiling" != no; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. +set dummy ${ac_tool_prefix}strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$STRIP"; then + ac_cv_prog_STRIP="$STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_STRIP="${ac_tool_prefix}strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +STRIP=$ac_cv_prog_STRIP +if test -n "$STRIP"; then + { $as_echo "$as_me:$LINENO: result: $STRIP" >&5 +$as_echo "$STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_STRIP"; then + ac_ct_STRIP=$STRIP + # Extract the first word of "strip", so it can be a program name with args. +set dummy strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_STRIP"; then + ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_STRIP="strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP +if test -n "$ac_ct_STRIP"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5 +$as_echo "$ac_ct_STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_STRIP" = x; then + STRIP=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + STRIP=$ac_ct_STRIP + fi +else + STRIP="$ac_cv_prog_STRIP" +fi + +fi +INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s" + +# We need awk for the "check" target. The system "awk" is bad on +# some platforms. +# Always define AMTAR for backward compatibility. + +AMTAR=${AMTAR-"${am_missing_run}tar"} + +am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -' + + + + + +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. +set dummy ${ac_tool_prefix}ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$RANLIB"; then + ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +RANLIB=$ac_cv_prog_RANLIB +if test -n "$RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $RANLIB" >&5 +$as_echo "$RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_RANLIB"; then + ac_ct_RANLIB=$RANLIB + # Extract the first word of "ranlib", so it can be a program name with args. +set dummy ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_RANLIB"; then + ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_RANLIB="ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB +if test -n "$ac_ct_RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5 +$as_echo "$ac_ct_RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_RANLIB" = x; then + RANLIB=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + RANLIB=$ac_ct_RANLIB + fi +else + RANLIB="$ac_cv_prog_RANLIB" +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args. +set dummy ${ac_tool_prefix}gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CC"; then + ac_ct_CC=$CC + # Extract the first word of "gcc", so it can be a program name with args. +set dummy gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +else + CC="$ac_cv_prog_CC" +fi + +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args. +set dummy ${ac_tool_prefix}cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + fi +fi +if test -z "$CC"; then + # Extract the first word of "cc", so it can be a program name with args. +set dummy cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else + ac_prog_rejected=no +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then + ac_prog_rejected=yes + continue + fi + ac_cv_prog_CC="cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +if test $ac_prog_rejected = yes; then + # We found a bogon in the path, so make sure we never use it. + set dummy $ac_cv_prog_CC + shift + if test $@%:@ != 0; then + # We chose a different compiler from the bogus one. + # However, it has the same basename, so the bogon will be chosen + # first if we set CC to just the basename; use the full file name. + shift + ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@" + fi +fi +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + for ac_prog in cl.exe + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="$ac_tool_prefix$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$CC" && break + done +fi +if test -z "$CC"; then + ac_ct_CC=$CC + for ac_prog in cl.exe +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$ac_ct_CC" && break +done + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +fi + +fi + + +test -z "$CC" && { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } + +# Provide some information about the compiler. +$as_echo "$as_me:$LINENO: checking for C compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +{ (ac_try="$ac_compiler --version >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler --version >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -v >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -v >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -V >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -V >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } + +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +ac_clean_files_save=$ac_clean_files +ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out" +# Try to create an executable without -o first, disregard a.out. +# It will help us diagnose broken compilers, and finding out an intuition +# of exeext. +{ $as_echo "$as_me:$LINENO: checking for C compiler default output file name" >&5 +$as_echo_n "checking for C compiler default output file name... " >&6; } +ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'` + +# The possible output files: +ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*" + +ac_rmfiles= +for ac_file in $ac_files +do + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; + * ) ac_rmfiles="$ac_rmfiles $ac_file";; + esac +done +rm -f $ac_rmfiles + +if { (ac_try="$ac_link_default" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link_default") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + # Autoconf-2.13 could set the ac_cv_exeext variable to `no'. +# So ignore a value of `no', otherwise this would lead to `EXEEXT = no' +# in a Makefile. 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" >&6; } +if test "${ac_cv_prog_cc_c89+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_cv_prog_cc_c89=no +ac_save_CC=$CC +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +#include +#include +#include +#include +/* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ +struct buf { int x; }; +FILE * (*rcsopen) (struct buf *, struct stat *, int); +static char *e (p, i) + char **p; + int i; +{ + return p[i]; +} +static char *f (char * (*g) (char **, int), char **p, ...) +{ + char *s; + va_list v; + va_start (v,p); + s = g (p, va_arg (v,int)); + va_end (v); + return s; +} + +/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has + function prototypes and stuff, but not '\xHH' hex character constants. + These don't provoke an error unfortunately, instead are silently treated + as 'x'. The following induces an error, until -std is added to get + proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an + array size at least. It's necessary to write '\x00'==0 to get something + that's true only with -std. */ +int osf4_cc_array ['\x00' == 0 ? 1 : -1]; + +/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters + inside strings and character constants. */ +#define FOO(x) 'x' +int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1]; + +int test (int i, double x); +struct s1 {int (*f) (int a);}; +struct s2 {int (*f) (double a);}; +int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); +int argc; +char **argv; +int +main () +{ +return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; + ; + return 0; +} +_ACEOF +for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \ + -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__" +do + CC="$ac_save_CC $ac_arg" + rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_cc_c89=$ac_arg +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + +fi + +rm -f core conftest.err conftest.$ac_objext + test "x$ac_cv_prog_cc_c89" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC + +fi +# AC_CACHE_VAL +case "x$ac_cv_prog_cc_c89" in + x) + { $as_echo "$as_me:$LINENO: result: none needed" >&5 +$as_echo "none needed" >&6; } ;; + xno) + { $as_echo "$as_me:$LINENO: result: unsupported" >&5 +$as_echo "unsupported" >&6; } ;; + *) + CC="$CC $ac_cv_prog_cc_c89" + { $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5 +$as_echo "$ac_cv_prog_cc_c89" >&6; } ;; +esac + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +DEPDIR="${am__leading_dot}deps" + +ac_config_commands="$ac_config_commands depfiles" + + +am_make=${MAKE-make} +cat > confinc << 'END' +am__doit: + @echo done +.PHONY: am__doit +END +# If we don't find an include directive, just comment out the code. +{ $as_echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5 +$as_echo_n "checking for style of include used by $am_make... " >&6; } +am__include="#" +am__quote= +_am_result=none +# First try GNU make style include. +echo "include confinc" > confmf +# We grep out `Entering directory' and `Leaving directory' +# messages which can occur if `w' ends up in MAKEFLAGS. +# In particular we don't look at `^make:' because GNU make might +# be invoked under some other name (usually "gmake"), in which +# case it prints its new name instead of `make'. +if test "`$am_make -s -f confmf 2> /dev/null | grep -v 'ing directory'`" = "done"; then + am__include=include + am__quote= + _am_result=GNU +fi +# Now try BSD make style include. +if test "$am__include" = "#"; then + echo '.include "confinc"' > confmf + if test "`$am_make -s -f confmf 2> /dev/null`" = "done"; then + am__include=.include + am__quote="\"" + _am_result=BSD + fi +fi + + +{ $as_echo "$as_me:$LINENO: result: $_am_result" >&5 +$as_echo "$_am_result" >&6; } +rm -f confinc confmf + +@%:@ Check whether --enable-dependency-tracking was given. +if test "${enable_dependency_tracking+set}" = set; then + enableval=$enable_dependency_tracking; +fi + +if test "x$enable_dependency_tracking" != xno; then + am_depcomp="$ac_aux_dir/depcomp" + AMDEPBACKSLASH='\' +fi + if test "x$enable_dependency_tracking" != xno; then + AMDEP_TRUE= + AMDEP_FALSE='#' +else + AMDEP_TRUE='#' + AMDEP_FALSE= +fi + + + +depcc="$CC" am_compiler_list= + +{ $as_echo "$as_me:$LINENO: checking dependency style of $depcc" >&5 +$as_echo_n "checking dependency style of $depcc... " >&6; } +if test "${am_cv_CC_dependencies_compiler_type+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then + # We make a subdir and do the tests there. Otherwise we can end up + # making bogus files that we don't know about and never remove. For + # instance it was reported that on HP-UX the gcc test will end up + # making a dummy file named `D' -- because `-MD' means `put the output + # in D'. + mkdir conftest.dir + # Copy depcomp to subdir because otherwise we won't find it if we're + # using a relative directory. + cp "$am_depcomp" conftest.dir + cd conftest.dir + # We will build objects and dependencies in a subdirectory because + # it helps to detect inapplicable dependency modes. For instance + # both Tru64's cc and ICC support -MD to output dependencies as a + # side effect of compilation, but ICC will put the dependencies in + # the current directory while Tru64 will put them in the object + # directory. + mkdir sub + + am_cv_CC_dependencies_compiler_type=none + if test "$am_compiler_list" = ""; then + am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp` + fi + for depmode in $am_compiler_list; do + # Setup a source with many dependencies, because some compilers + # like to wrap large dependency lists on column 80 (with \), and + # we should not choose a depcomp mode which is confused by this. + # + # We need to recreate these files for each test, as the compiler may + # overwrite some of them when testing with obscure command lines. + # This happens at least with the AIX C compiler. + : > sub/conftest.c + for i in 1 2 3 4 5 6; do + echo '#include "conftst'$i'.h"' >> sub/conftest.c + # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with + # Solaris 8's {/usr,}/bin/sh. + touch sub/conftst$i.h + done + echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf + + case $depmode in + nosideeffect) + # after this tag, mechanisms are not by side-effect, so they'll + # only be used when explicitly requested + if test "x$enable_dependency_tracking" = xyes; then + continue + else + break + fi + ;; + none) break ;; + esac + # We check with `-c' and `-o' for the sake of the "dashmstdout" + # mode. It turns out that the SunPro C++ compiler does not properly + # handle `-M -o', and we need to detect this. + if depmode=$depmode \ + source=sub/conftest.c object=sub/conftest.${OBJEXT-o} \ + depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \ + $SHELL ./depcomp $depcc -c -o sub/conftest.${OBJEXT-o} sub/conftest.c \ + >/dev/null 2>conftest.err && + grep sub/conftst1.h sub/conftest.Po > /dev/null 2>&1 && + grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 && + grep sub/conftest.${OBJEXT-o} sub/conftest.Po > /dev/null 2>&1 && + ${MAKE-make} -s -f confmf > /dev/null 2>&1; then + # icc doesn't choke on unknown options, it will just issue warnings + # or remarks (even with -Werror). So we grep stderr for any message + # that says an option was ignored or not supported. + # When given -MP, icc 7.0 and 7.1 complain thusly: + # icc: Command line warning: ignoring option '-M'; no argument required + # The diagnosis changed in icc 8.0: + # icc: Command line remark: option '-MP' not supported + if (grep 'ignoring option' conftest.err || + grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else + am_cv_CC_dependencies_compiler_type=$depmode + break + fi + fi + done + + cd .. + rm -rf conftest.dir +else + am_cv_CC_dependencies_compiler_type=none +fi + +fi +{ $as_echo "$as_me:$LINENO: result: $am_cv_CC_dependencies_compiler_type" >&5 +$as_echo "$am_cv_CC_dependencies_compiler_type" >&6; } +CCDEPMODE=depmode=$am_cv_CC_dependencies_compiler_type + + if + test "x$enable_dependency_tracking" != xno \ + && test "$am_cv_CC_dependencies_compiler_type" = gcc3; then + am__fastdepCC_TRUE= + am__fastdepCC_FALSE='#' +else + am__fastdepCC_TRUE='#' + am__fastdepCC_FALSE= +fi + + +ac_ext=f +ac_compile='$F77 -c $FFLAGS conftest.$ac_ext >&5' +ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_f77_compiler_gnu +if test -n "$ac_tool_prefix"; then + for ac_prog in ifort g77 + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_F77+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$F77"; then + ac_cv_prog_F77="$F77" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_F77="$ac_tool_prefix$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +F77=$ac_cv_prog_F77 +if test -n "$F77"; then + { $as_echo "$as_me:$LINENO: result: $F77" >&5 +$as_echo "$F77" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$F77" && break + done +fi +if test -z "$F77"; then + ac_ct_F77=$F77 + for ac_prog in ifort g77 +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_F77+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_F77"; then + ac_cv_prog_ac_ct_F77="$ac_ct_F77" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_F77="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_F77=$ac_cv_prog_ac_ct_F77 +if test -n "$ac_ct_F77"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_F77" >&5 +$as_echo "$ac_ct_F77" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$ac_ct_F77" && break +done + + if test "x$ac_ct_F77" = x; then + F77="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + F77=$ac_ct_F77 + fi +fi + + +# Provide some information about the compiler. +$as_echo "$as_me:$LINENO: checking for Fortran 77 compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +{ (ac_try="$ac_compiler --version >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler --version >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -v >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -v >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -V >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -V >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +rm -f a.out + +# If we don't use `.F' as extension, the preprocessor is not run on the +# input file. (Note that this only needs to work for GNU compilers.) +ac_save_ext=$ac_ext +ac_ext=F +{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU Fortran 77 compiler" >&5 +$as_echo_n "checking whether we are using the GNU Fortran 77 compiler... " >&6; } +if test "${ac_cv_f77_compiler_gnu+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main +#ifndef __GNUC__ + choke me +#endif + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_compiler_gnu=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_compiler_gnu=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext +ac_cv_f77_compiler_gnu=$ac_compiler_gnu + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_compiler_gnu" >&5 +$as_echo "$ac_cv_f77_compiler_gnu" >&6; } +ac_ext=$ac_save_ext +ac_test_FFLAGS=${FFLAGS+set} +ac_save_FFLAGS=$FFLAGS +FFLAGS= +{ $as_echo "$as_me:$LINENO: checking whether $F77 accepts -g" >&5 +$as_echo_n "checking whether $F77 accepts -g... " >&6; } +if test "${ac_cv_prog_f77_g+set}" = set; then + $as_echo_n "(cached) " >&6 +else + FFLAGS=-g +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_g=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_prog_f77_g=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_g" >&5 +$as_echo "$ac_cv_prog_f77_g" >&6; } +if test "$ac_test_FFLAGS" = set; then + FFLAGS=$ac_save_FFLAGS +elif test $ac_cv_prog_f77_g = yes; then + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-g -O2" + else + FFLAGS="-g" + fi +else + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-O2" + else + FFLAGS= + fi +fi + +if test $ac_compiler_gnu = yes; then + G77=yes +else + G77= +fi +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +ac_ext=f +ac_compile='$F77 -c $FFLAGS conftest.$ac_ext >&5' +ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_f77_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to get verbose linking output from $F77" >&5 +$as_echo_n "checking how to get verbose linking output from $F77... " >&6; } +if test "${ac_cv_prog_f77_v+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_v= +# Try some options frequently used verbose output +for ac_verb in -v -verbose --verbose -V -\#\#\#; do + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_verb" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + # look for -l* and *.a constructs in the output + for ac_arg in $ac_f77_v_output; do + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a | -[lLRu]*) + ac_cv_prog_f77_v=$ac_verb + break 2 ;; + esac + done +done +if test -z "$ac_cv_prog_f77_v"; then + { $as_echo "$as_me:$LINENO: WARNING: cannot determine how to obtain linking information from $F77" >&5 +$as_echo "$as_me: WARNING: cannot determine how to obtain linking information from $F77" >&2;} +fi +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: WARNING: compilation failed" >&5 +$as_echo "$as_me: WARNING: compilation failed" >&2;} +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_v" >&5 +$as_echo "$ac_cv_prog_f77_v" >&6; } +{ $as_echo "$as_me:$LINENO: checking for Fortran 77 libraries of $F77" >&5 +$as_echo_n "checking for Fortran 77 libraries of $F77... " >&6; } +if test "${ac_cv_f77_libs+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "x$FLIBS" != "x"; then + ac_cv_f77_libs="$FLIBS" # Let the user override the test. +else + +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_cv_prog_f77_v" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + +ac_cv_f77_libs= + +# Save positional arguments (if any) +ac_save_positional="$@" + +set X $ac_f77_v_output +while test $@%:@ != 1; do + shift + ac_arg=$1 + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -bI:*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_arg; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi +fi + + ;; + # Ignore these flags. + -lang* | -lcrt*.o | -lc | -lgcc* | -lSystem | -libmil | -LANG:=* | -LIST:* | -LNO:*) + ;; + -lkernel32) + test x"$CYGWIN" != xyes && ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + -[LRuYz]) + # These flags, when seen by themselves, take an argument. + # We remove the space between option and argument and re-iterate + # unless we find an empty arg or a new option (starting with -) + case $2 in + "" | -*);; + *) + ac_arg="$ac_arg$2" + shift; shift + set X $ac_arg "$@" + ;; + esac + ;; + -YP,*) + for ac_j in `$as_echo "$ac_arg" | sed -e 's/-YP,/-L/;s/:/ -L/g'`; do + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_j" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_arg="$ac_arg $ac_j" + ac_cv_f77_libs="$ac_cv_f77_libs $ac_j" +fi + + done + ;; + -[lLR]*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -zallextract*| -zdefaultextract) + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + # Ignore everything else. + esac +done +# restore positional arguments +set X $ac_save_positional; shift + +# We only consider "LD_RUN_PATH" on Solaris systems. If this is seen, +# then we insist that the "run path" must be an absolute path (i.e. it +# must begin with a "/"). +case `(uname -sr) 2>/dev/null` in + "SunOS 5"*) + ac_ld_run_path=`$as_echo "$ac_f77_v_output" | + sed -n 's,^.*LD_RUN_PATH *= *\(/[^ ]*\).*$,-R\1,p'` + test "x$ac_ld_run_path" != x && + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_ld_run_path; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_ld_run_path" +fi + ;; +esac +fi # test "x$[]_AC_LANG_PREFIX[]LIBS" = "x" + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_libs" >&5 +$as_echo "$ac_cv_f77_libs" >&6; } +FLIBS="$ac_cv_f77_libs" + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + +if test "x$CC" != xcc; then + { $as_echo "$as_me:$LINENO: checking whether $CC and cc understand -c and -o together" >&5 +$as_echo_n "checking whether $CC and cc understand -c and -o together... " >&6; } +else + { $as_echo "$as_me:$LINENO: checking whether cc understands -c and -o together" >&5 +$as_echo_n "checking whether cc understands -c and -o together... " >&6; } +fi +set dummy $CC; ac_cc=`$as_echo "$2" | + sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +if { as_var=ac_cv_prog_cc_${ac_cc}_c_o; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +# Make sure it works both with $CC and with simple cc. +# We do the test twice because some compilers refuse to overwrite an +# existing .o file with -o, though they will create one. +ac_try='$CC -c conftest.$ac_ext -o conftest2.$ac_objext >&5' +rm -f conftest2.* +if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; +then + eval ac_cv_prog_cc_${ac_cc}_c_o=yes + if test "x$CC" != xcc; then + # Test first that cc exists at all. + if { ac_try='cc -c conftest.$ac_ext >&5' + { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; }; then + ac_try='cc -c conftest.$ac_ext -o conftest2.$ac_objext >&5' + rm -f conftest2.* + if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; + then + # cc works too. + : + else + # cc exists but doesn't like -o. + eval ac_cv_prog_cc_${ac_cc}_c_o=no + fi + fi + fi +else + eval ac_cv_prog_cc_${ac_cc}_c_o=no +fi +rm -f core conftest* + +fi +if eval test \$ac_cv_prog_cc_${ac_cc}_c_o = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + +cat >>confdefs.h <<\_ACEOF +@%:@define NO_MINUS_C_MINUS_O 1 +_ACEOF + +fi + +# FIXME: we rely on the cache variable name because +# there is no other way. +set dummy $CC +am_cc=`echo $2 | sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +eval am_t=\$ac_cv_prog_cc_${am_cc}_c_o +if test "$am_t" != yes; then + # Losing compiler, so override with the script. + # FIXME: It is wrong to rewrite CC. + # But if we don't then we get into trouble of one sort or another. + # A longer-term fix would be to have automake use am__CC in this case, + # and then we could set am__CC="\$(top_srcdir)/compile \$(CC)" + CC="$am_aux_dir/compile $CC" +fi + + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5 +$as_echo_n "checking how to run the C preprocessor... " >&6; } +# On Suns, sometimes $CPP names a directory. +if test -n "$CPP" && test -d "$CPP"; then + CPP= +fi +if test -z "$CPP"; then + if test "${ac_cv_prog_CPP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # Double quotes because CPP needs to be expanded + for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp" + do + ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@ifdef __STDC__ +@%:@ include +@%:@else +@%:@ include +@%:@endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + break +fi + + done + ac_cv_prog_CPP=$CPP + +fi + CPP=$ac_cv_prog_CPP +else + ac_cv_prog_CPP=$CPP +fi +{ $as_echo "$as_me:$LINENO: result: $CPP" >&5 +$as_echo "$CPP" >&6; } +ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@ifdef __STDC__ +@%:@ include +@%:@else +@%:@ include +@%:@endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + : +else + { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +{ $as_echo "$as_me:$LINENO: checking for X" >&5 +$as_echo_n "checking for X... " >&6; } + + +@%:@ Check whether --with-x was given. +if test "${with_x+set}" = set; then + withval=$with_x; +fi + +# $have_x is `yes', `no', `disabled', or empty when we do not yet know. +if test "x$with_x" = xno; then + # The user explicitly disabled X. + have_x=disabled +else + case $x_includes,$x_libraries in #( + *\'*) { { $as_echo "$as_me:$LINENO: error: cannot use X directory names containing '" >&5 +$as_echo "$as_me: error: cannot use X directory names containing '" >&2;} + { (exit 1); exit 1; }; };; #( + *,NONE | NONE,*) if test "${ac_cv_have_x+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # One or both of the vars are not set, and there is no cached value. +ac_x_includes=no ac_x_libraries=no +rm -f -r conftest.dir +if mkdir conftest.dir; then + cd conftest.dir + cat >Imakefile <<'_ACEOF' +incroot: + @echo incroot='${INCROOT}' +usrlibdir: + @echo usrlibdir='${USRLIBDIR}' +libdir: + @echo libdir='${LIBDIR}' +_ACEOF + if (export CC; ${XMKMF-xmkmf}) >/dev/null 2>/dev/null && test -f Makefile; then + # GNU make sometimes prints "make[1]: Entering...", which would confuse us. + for ac_var in incroot usrlibdir libdir; do + eval "ac_im_$ac_var=\`\${MAKE-make} $ac_var 2>/dev/null | sed -n 's/^$ac_var=//p'\`" + done + # Open Windows xmkmf reportedly sets LIBDIR instead of USRLIBDIR. + for ac_extension in a so sl dylib la dll; do + if test ! -f "$ac_im_usrlibdir/libX11.$ac_extension" && + test -f "$ac_im_libdir/libX11.$ac_extension"; then + ac_im_usrlibdir=$ac_im_libdir; break + fi + done + # Screen out bogus values from the imake configuration. They are + # bogus both because they are the default anyway, and because + # using them would break gcc on systems where it needs fixed includes. + case $ac_im_incroot in + /usr/include) ac_x_includes= ;; + *) test -f "$ac_im_incroot/X11/Xos.h" && ac_x_includes=$ac_im_incroot;; + esac + case $ac_im_usrlibdir in + /usr/lib | /usr/lib64 | /lib | /lib64) ;; + *) test -d "$ac_im_usrlibdir" && ac_x_libraries=$ac_im_usrlibdir ;; + esac + fi + cd .. + rm -f -r conftest.dir +fi + +# Standard set of common directories for X headers. +# Check X11 before X11Rn because it is often a symlink to the current release. +ac_x_header_dirs=' +/usr/X11/include +/usr/X11R6/include +/usr/X11R5/include +/usr/X11R4/include + +/usr/include/X11 +/usr/include/X11R6 +/usr/include/X11R5 +/usr/include/X11R4 + +/usr/local/X11/include +/usr/local/X11R6/include +/usr/local/X11R5/include +/usr/local/X11R4/include + +/usr/local/include/X11 +/usr/local/include/X11R6 +/usr/local/include/X11R5 +/usr/local/include/X11R4 + +/usr/X386/include +/usr/x386/include +/usr/XFree86/include/X11 + +/usr/include +/usr/local/include +/usr/unsupported/include +/usr/athena/include +/usr/local/x11r5/include +/usr/lpp/Xamples/include + +/usr/openwin/include +/usr/openwin/share/include' + +if test "$ac_x_includes" = no; then + # Guess where to find include files, by looking for Xlib.h. + # First, try using that file with no special directory specified. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # We can compile using X headers with no special include directory. +ac_x_includes= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + for ac_dir in $ac_x_header_dirs; do + if test -r "$ac_dir/X11/Xlib.h"; then + ac_x_includes=$ac_dir + break + fi +done +fi + +rm -f conftest.err conftest.$ac_ext +fi # $ac_x_includes = no + +if test "$ac_x_libraries" = no; then + # Check for the libraries. + # See if we find them without any special options. + # Don't add to $LIBS permanently. + ac_save_LIBS=$LIBS + LIBS="-lX11 $LIBS" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +int +main () +{ +XrmInitialize () + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + LIBS=$ac_save_LIBS +# We can link X programs with no special library path. +ac_x_libraries= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS=$ac_save_LIBS +for ac_dir in `$as_echo "$ac_x_includes $ac_x_header_dirs" | sed s/include/lib/g` +do + # Don't even attempt the hair of trying to link an X program! + for ac_extension in a so sl dylib la dll; do + if test -r "$ac_dir/libX11.$ac_extension"; then + ac_x_libraries=$ac_dir + break 2 + fi + done +done +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi # $ac_x_libraries = no + +case $ac_x_includes,$ac_x_libraries in #( + no,* | *,no | *\'*) + # Didn't find X, or a directory has "'" in its name. + ac_cv_have_x="have_x=no";; #( + *) + # Record where we found X for the cache. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$ac_x_includes'\ + ac_x_libraries='$ac_x_libraries'" +esac +fi +;; #( + *) have_x=yes;; + esac + eval "$ac_cv_have_x" +fi # $with_x != no + +if test "$have_x" != yes; then + { $as_echo "$as_me:$LINENO: result: $have_x" >&5 +$as_echo "$have_x" >&6; } + no_x=yes +else + # If each of the values was on the command line, it overrides each guess. + test "x$x_includes" = xNONE && x_includes=$ac_x_includes + test "x$x_libraries" = xNONE && x_libraries=$ac_x_libraries + # Update the cache value to reflect the command line values. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$x_includes'\ + ac_x_libraries='$x_libraries'" + { $as_echo "$as_me:$LINENO: result: libraries $x_libraries, headers $x_includes" >&5 +$as_echo "libraries $x_libraries, headers $x_includes" >&6; } +fi + +if test "$no_x" = yes; then + # Not all programs may use this symbol, but it does not hurt to define it. + +cat >>confdefs.h <<\_ACEOF +@%:@define X_DISPLAY_MISSING 1 +_ACEOF + + X_CFLAGS= X_PRE_LIBS= X_LIBS= X_EXTRA_LIBS= +else + if test -n "$x_includes"; then + X_CFLAGS="$X_CFLAGS -I$x_includes" + fi + + # It would also be nice to do this for all -L options, not just this one. + if test -n "$x_libraries"; then + X_LIBS="$X_LIBS -L$x_libraries" + # For Solaris; some versions of Sun CC require a space after -R and + # others require no space. Words are not sufficient . . . . + { $as_echo "$as_me:$LINENO: checking whether -R must be followed by a space" >&5 +$as_echo_n "checking whether -R must be followed by a space... " >&6; } + ac_xsave_LIBS=$LIBS; LIBS="$LIBS -R$x_libraries" + ac_xsave_c_werror_flag=$ac_c_werror_flag + ac_c_werror_flag=yes + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + X_LIBS="$X_LIBS -R$x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS="$ac_xsave_LIBS -R $x_libraries" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + X_LIBS="$X_LIBS -R $x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: result: neither works" >&5 +$as_echo "neither works" >&6; } +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + ac_c_werror_flag=$ac_xsave_c_werror_flag + LIBS=$ac_xsave_LIBS + fi + + # Check for system-dependent libraries X programs must link with. + # Do this before checking for the system-independent R6 libraries + # (-lICE), since we may need -lsocket or whatever for X linking. + + if test "$ISC" = yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl_s -linet" + else + # Martyn Johnson says this is needed for Ultrix, if the X + # libraries were built with DECnet support. And Karl Berry says + # the Alpha needs dnet_stub (dnet does not exist). + ac_xsave_LIBS="$LIBS"; LIBS="$LIBS $X_LIBS -lX11" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char XOpenDisplay (); +int +main () +{ +return XOpenDisplay (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet... " >&6; } +if test "${ac_cv_lib_dnet_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet" +fi + + if test $ac_cv_lib_dnet_dnet_ntoa = no; then + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet_stub" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet_stub... " >&6; } +if test "${ac_cv_lib_dnet_stub_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet_stub $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_stub_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_stub_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_stub_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_stub_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet_stub" +fi + + fi +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + LIBS="$ac_xsave_LIBS" + + # msh@cis.ufl.edu says -lnsl (and -lsocket) are needed for his 386/AT, + # to get the SysV transport functions. + # Chad R. Larson says the Pyramis MIS-ES running DC/OSx (SVR4) + # needs -lnsl. + # The nsl library prevents programs from opening the X display + # on Irix 5.2, according to T.E. Dickey. + # The functions gethostbyname, getservbyname, and inet_addr are + # in -lbsd on LynxOS 3.0.1/i386, according to Lars Hecking. + { $as_echo "$as_me:$LINENO: checking for gethostbyname" >&5 +$as_echo_n "checking for gethostbyname... " >&6; } +if test "${ac_cv_func_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define gethostbyname to an innocuous variant, in case declares gethostbyname. + For example, HP-UX 11i declares gettimeofday. */ +#define gethostbyname innocuous_gethostbyname + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char gethostbyname (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef gethostbyname + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_gethostbyname || defined __stub___gethostbyname +choke me +#endif + +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_gethostbyname" >&5 +$as_echo "$ac_cv_func_gethostbyname" >&6; } + + if test $ac_cv_func_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5 +$as_echo_n "checking for gethostbyname in -lnsl... " >&6; } +if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lnsl $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_nsl_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_nsl_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5 +$as_echo "$ac_cv_lib_nsl_gethostbyname" >&6; } +if test "x$ac_cv_lib_nsl_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl" +fi + + if test $ac_cv_lib_nsl_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lbsd" >&5 +$as_echo_n "checking for gethostbyname in -lbsd... " >&6; } +if test "${ac_cv_lib_bsd_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lbsd $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_bsd_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_bsd_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_bsd_gethostbyname" >&5 +$as_echo "$ac_cv_lib_bsd_gethostbyname" >&6; } +if test "x$ac_cv_lib_bsd_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lbsd" +fi + + fi + fi + + # lieder@skyler.mavd.honeywell.com says without -lsocket, + # socket/setsockopt and other routines are undefined under SCO ODT + # 2.0. But -lsocket is broken on IRIX 5.2 (and is not necessary + # on later versions), says Simon Leinen: it contains gethostby* + # variants that don't use the name server (or something). -lsocket + # must be given before -lnsl if both are needed. We assume that + # if connect needs -lnsl, so does gethostbyname. + { $as_echo "$as_me:$LINENO: checking for connect" >&5 +$as_echo_n "checking for connect... " >&6; } +if test "${ac_cv_func_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define connect to an innocuous variant, in case declares connect. + For example, HP-UX 11i declares gettimeofday. */ +#define connect innocuous_connect + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char connect (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef connect + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_connect || defined __stub___connect +choke me +#endif + +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_connect" >&5 +$as_echo "$ac_cv_func_connect" >&6; } + + if test $ac_cv_func_connect = no; then + { $as_echo "$as_me:$LINENO: checking for connect in -lsocket" >&5 +$as_echo_n "checking for connect in -lsocket... " >&6; } +if test "${ac_cv_lib_socket_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lsocket $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_socket_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_socket_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5 +$as_echo "$ac_cv_lib_socket_connect" >&6; } +if test "x$ac_cv_lib_socket_connect" = x""yes; then + X_EXTRA_LIBS="-lsocket $X_EXTRA_LIBS" +fi + + fi + + # Guillermo Gomez says -lposix is necessary on A/UX. + { $as_echo "$as_me:$LINENO: checking for remove" >&5 +$as_echo_n "checking for remove... " >&6; } +if test "${ac_cv_func_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define remove to an innocuous variant, in case declares remove. + For example, HP-UX 11i declares gettimeofday. */ +#define remove innocuous_remove + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char remove (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef remove + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_remove || defined __stub___remove +choke me +#endif + +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_remove" >&5 +$as_echo "$ac_cv_func_remove" >&6; } + + if test $ac_cv_func_remove = no; then + { $as_echo "$as_me:$LINENO: checking for remove in -lposix" >&5 +$as_echo_n "checking for remove in -lposix... " >&6; } +if test "${ac_cv_lib_posix_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lposix $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_posix_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_posix_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_posix_remove" >&5 +$as_echo "$ac_cv_lib_posix_remove" >&6; } +if test "x$ac_cv_lib_posix_remove" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lposix" +fi + + fi + + # BSDI BSD/OS 2.1 needs -lipc for XOpenDisplay. + { $as_echo "$as_me:$LINENO: checking for shmat" >&5 +$as_echo_n "checking for shmat... " >&6; } +if test "${ac_cv_func_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define shmat to an innocuous variant, in case declares shmat. + For example, HP-UX 11i declares gettimeofday. */ +#define shmat innocuous_shmat + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char shmat (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef shmat + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_shmat || defined __stub___shmat +choke me +#endif + +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_shmat" >&5 +$as_echo "$ac_cv_func_shmat" >&6; } + + if test $ac_cv_func_shmat = no; then + { $as_echo "$as_me:$LINENO: checking for shmat in -lipc" >&5 +$as_echo_n "checking for shmat in -lipc... " >&6; } +if test "${ac_cv_lib_ipc_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lipc $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ipc_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ipc_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ipc_shmat" >&5 +$as_echo "$ac_cv_lib_ipc_shmat" >&6; } +if test "x$ac_cv_lib_ipc_shmat" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc" +fi + + fi + fi + + # Check for libraries that X11R6 Xt/Xaw programs need. + ac_save_LDFLAGS=$LDFLAGS + test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries" + # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to + # check for ICE first), but we must link in the order -lSM -lICE or + # we get undefined symbols. So assume we have SM if we have ICE. + # These have to be linked with before -lX11, unlike the other + # libraries we check for below, so use a different variable. + # John Interrante, Karl Berry + { $as_echo "$as_me:$LINENO: checking for IceConnectionNumber in -lICE" >&5 +$as_echo_n "checking for IceConnectionNumber in -lICE... " >&6; } +if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lICE $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char IceConnectionNumber (); +int +main () +{ +return IceConnectionNumber (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ICE_IceConnectionNumber=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ICE_IceConnectionNumber=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5 +$as_echo "$ac_cv_lib_ICE_IceConnectionNumber" >&6; } +if test "x$ac_cv_lib_ICE_IceConnectionNumber" = x""yes; then + X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE" +fi + + LDFLAGS=$ac_save_LDFLAGS + +fi + +ISSM_OPTIONS +ac_config_files="$ac_config_files Makefile src/Makefile src/c/Makefile src/mex/Makefile bin/Makefile" + +cat >confcache <<\_ACEOF +# This file is a shell script that caches the results of configure +# tests run on this system so they can be shared between configure +# scripts and configure runs, see configure's option --config-cache. +# It is not useful on other systems. If it contains results you don't +# want to keep, you may remove or edit it. +# +# config.status only pays attention to the cache file if you give it +# the --recheck option to rerun configure. +# +# `ac_cv_env_foo' variables (set or unset) will be overridden when +# loading this file, other *unset* `ac_cv_foo' will be assigned the +# following values. + +_ACEOF + +# The following way of writing the cache mishandles newlines in values, +# but we know of no workaround that is simple, portable, and efficient. +# So, we kill variables containing newlines. +# Ultrix sh set writes to stderr and can't be redirected directly, +# and sets the high bit in the cache file unless we assign to the vars. +( + for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do + eval ac_val=\$$ac_var + case $ac_val in #( + *${as_nl}*) + case $ac_var in #( + *_cv_*) { $as_echo "$as_me:$LINENO: WARNING: cache variable $ac_var contains a newline" >&5 +$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;; + esac + case $ac_var in #( + _ | IFS | as_nl) ;; #( + BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #( + *) $as_unset $ac_var ;; + esac ;; + esac + done + + (set) 2>&1 | + case $as_nl`(ac_space=' '; set) 2>&1` in #( + *${as_nl}ac_space=\ *) + # `set' does not quote correctly, so add quotes (double-quote + # substitution turns \\\\ into \\, and sed turns \\ into \). + sed -n \ + "s/'/'\\\\''/g; + s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p" + ;; #( + *) + # `set' quotes correctly as required by POSIX, so do not add quotes. + sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p" + ;; + esac | + sort +) | + sed ' + /^ac_cv_env_/b end + t clear + :clear + s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/ + t end + s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/ + :end' >>confcache +if diff "$cache_file" confcache >/dev/null 2>&1; then :; else + if test -w "$cache_file"; then + test "x$cache_file" != "x/dev/null" && + { $as_echo "$as_me:$LINENO: updating cache $cache_file" >&5 +$as_echo "$as_me: updating cache $cache_file" >&6;} + cat confcache >$cache_file + else + { $as_echo "$as_me:$LINENO: not updating unwritable cache $cache_file" >&5 +$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;} + fi +fi +rm -f confcache + +test "x$prefix" = xNONE && prefix=$ac_default_prefix +# Let make expand exec_prefix. +test "x$exec_prefix" = xNONE && exec_prefix='${prefix}' + +DEFS=-DHAVE_CONFIG_H + +ac_libobjs= +ac_ltlibobjs= +for ac_i in : $LIB@&t@OBJS; do test "x$ac_i" = x: && continue + # 1. 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So we exec the FD to /dev/null, +# effectively closing config.log, so it can be properly (re)opened and +# appended to by config.status. 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We prefer a C program (faster), +# so one script is as good as another. But avoid the broken or +# incompatible versions: +# SysV /etc/install, /usr/sbin/install +# SunOS /usr/etc/install +# IRIX /sbin/install +# AIX /bin/install +# AmigaOS /C/install, which installs bootblocks on floppy discs +# AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag +# AFS /usr/afsws/bin/install, which mishandles nonexistent args +# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff" +# OS/2's system install, which has a completely different semantic +# ./install, which can be erroneously created by make from ./install.sh. +# Reject install programs that cannot install multiple files. +{ $as_echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5 +$as_echo_n "checking for a BSD-compatible install... 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It has an incompatible calling convention. + : + elif test $ac_prog = install && + grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then + # program-specific install script used by HP pwplus--don't use. + : + else + rm -rf conftest.one conftest.two conftest.dir + echo one > conftest.one + echo two > conftest.two + mkdir conftest.dir + if "$as_dir/$ac_prog$ac_exec_ext" -c conftest.one conftest.two "`pwd`/conftest.dir" && + test -s conftest.one && test -s conftest.two && + test -s conftest.dir/conftest.one && + test -s conftest.dir/conftest.two + then + ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c" + break 3 + fi + fi + fi + done + done + ;; +esac + +done +IFS=$as_save_IFS + +rm -rf conftest.one conftest.two conftest.dir + +fi + if test "${ac_cv_path_install+set}" = set; then + INSTALL=$ac_cv_path_install + else + # As a last resort, use the slow shell script. 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" >&6; } +if test -z "$MKDIR_P"; then + if test "${ac_cv_path_mkdir+set}" = set; then + $as_echo_n "(cached) " >&6 +else + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH$PATH_SEPARATOR/opt/sfw/bin +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_prog in mkdir gmkdir; do + for ac_exec_ext in '' $ac_executable_extensions; do + { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue + case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #( + 'mkdir (GNU coreutils) '* | \ + 'mkdir (coreutils) '* | \ + 'mkdir (fileutils) '4.1*) + ac_cv_path_mkdir=$as_dir/$ac_prog$ac_exec_ext + break 3;; + esac + done + done +done +IFS=$as_save_IFS + +fi + + if test "${ac_cv_path_mkdir+set}" = set; then + MKDIR_P="$ac_cv_path_mkdir -p" + else + # As a last resort, use the slow shell script. Don't cache a + # value for MKDIR_P within a source directory, because that will + # break other packages using the cache if that directory is + # removed, or if the value is a relative name. + test -d ./--version && rmdir ./--version + MKDIR_P="$ac_install_sh -d" + fi +fi +{ $as_echo "$as_me:$LINENO: result: $MKDIR_P" >&5 +$as_echo "$MKDIR_P" >&6; } + +mkdir_p="$MKDIR_P" +case $mkdir_p in + [\\/$]* | ?:[\\/]*) ;; + */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;; +esac + +for ac_prog in gawk mawk nawk awk +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_AWK+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$AWK"; then + ac_cv_prog_AWK="$AWK" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_AWK="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +AWK=$ac_cv_prog_AWK +if test -n "$AWK"; then + { $as_echo "$as_me:$LINENO: result: $AWK" >&5 +$as_echo "$AWK" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$AWK" && break +done + +{ $as_echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5 +$as_echo_n "checking whether ${MAKE-make} sets \$(MAKE)... " >&6; } +set x ${MAKE-make} +ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'` +if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.make <<\_ACEOF +SHELL = /bin/sh +all: + @echo '@@@%%%=$(MAKE)=@@@%%%' +_ACEOF +# GNU make sometimes prints "make[1]: Entering...", which would confuse us. +case `${MAKE-make} -f conftest.make 2>/dev/null` in + *@@@%%%=?*=@@@%%%*) + eval ac_cv_prog_make_${ac_make}_set=yes;; + *) + eval ac_cv_prog_make_${ac_make}_set=no;; +esac +rm -f conftest.make +fi +if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + SET_MAKE= +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + SET_MAKE="MAKE=${MAKE-make}" +fi + +rm -rf .tst 2>/dev/null +mkdir .tst 2>/dev/null +if test -d .tst; then + am__leading_dot=. +else + am__leading_dot=_ +fi +rmdir .tst 2>/dev/null + +if test "`cd $srcdir && pwd`" != "`pwd`"; then + # Use -I$(srcdir) only when $(srcdir) != ., so that make's output + # is not polluted with repeated "-I." + am__isrc=' -I$(srcdir)' + # test to see if srcdir already configured + if test -f $srcdir/config.status; then + { { $as_echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5 +$as_echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;} + { (exit 1); exit 1; }; } + fi +fi + +# test whether we have cygpath +if test -z "$CYGPATH_W"; then + if (cygpath --version) >/dev/null 2>/dev/null; then + CYGPATH_W='cygpath -w' + else + CYGPATH_W=echo + fi +fi + + +# Define the identity of the package. + PACKAGE='issm' + VERSION='1.0' + + +cat >>confdefs.h <<_ACEOF +@%:@define PACKAGE "$PACKAGE" +_ACEOF + + +cat >>confdefs.h <<_ACEOF +@%:@define VERSION "$VERSION" +_ACEOF + +# Some tools Automake needs. + +ACLOCAL=${ACLOCAL-"${am_missing_run}aclocal-${am__api_version}"} + + +AUTOCONF=${AUTOCONF-"${am_missing_run}autoconf"} + + +AUTOMAKE=${AUTOMAKE-"${am_missing_run}automake-${am__api_version}"} + + +AUTOHEADER=${AUTOHEADER-"${am_missing_run}autoheader"} + + +MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"} + +install_sh=${install_sh-"\$(SHELL) $am_aux_dir/install-sh"} + +# Installed binaries are usually stripped using `strip' when the user +# run `make install-strip'. However `strip' might not be the right +# tool to use in cross-compilation environments, therefore Automake +# will honor the `STRIP' environment variable to overrule this program. +if test "$cross_compiling" != no; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. +set dummy ${ac_tool_prefix}strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$STRIP"; then + ac_cv_prog_STRIP="$STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_STRIP="${ac_tool_prefix}strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +STRIP=$ac_cv_prog_STRIP +if test -n "$STRIP"; then + { $as_echo "$as_me:$LINENO: result: $STRIP" >&5 +$as_echo "$STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_STRIP"; then + ac_ct_STRIP=$STRIP + # Extract the first word of "strip", so it can be a program name with args. +set dummy strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_STRIP"; then + ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_STRIP="strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP +if test -n "$ac_ct_STRIP"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5 +$as_echo "$ac_ct_STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_STRIP" = x; then + STRIP=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + STRIP=$ac_ct_STRIP + fi +else + STRIP="$ac_cv_prog_STRIP" +fi + +fi +INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s" + +# We need awk for the "check" target. The system "awk" is bad on +# some platforms. +# Always define AMTAR for backward compatibility. + +AMTAR=${AMTAR-"${am_missing_run}tar"} + +am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -' + + + + + +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. +set dummy ${ac_tool_prefix}ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$RANLIB"; then + ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +RANLIB=$ac_cv_prog_RANLIB +if test -n "$RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $RANLIB" >&5 +$as_echo "$RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_RANLIB"; then + ac_ct_RANLIB=$RANLIB + # Extract the first word of "ranlib", so it can be a program name with args. +set dummy ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_RANLIB"; then + ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_RANLIB="ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB +if test -n "$ac_ct_RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5 +$as_echo "$ac_ct_RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_RANLIB" = x; then + RANLIB=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + RANLIB=$ac_ct_RANLIB + fi +else + RANLIB="$ac_cv_prog_RANLIB" +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args. +set dummy ${ac_tool_prefix}gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CC"; then + ac_ct_CC=$CC + # Extract the first word of "gcc", so it can be a program name with args. +set dummy gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +else + CC="$ac_cv_prog_CC" +fi + +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args. +set dummy ${ac_tool_prefix}cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + fi +fi +if test -z "$CC"; then + # Extract the first word of "cc", so it can be a program name with args. +set dummy cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else + ac_prog_rejected=no +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then + ac_prog_rejected=yes + continue + fi + ac_cv_prog_CC="cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +if test $ac_prog_rejected = yes; then + # We found a bogon in the path, so make sure we never use it. + set dummy $ac_cv_prog_CC + shift + if test $@%:@ != 0; then + # We chose a different compiler from the bogus one. + # However, it has the same basename, so the bogon will be chosen + # first if we set CC to just the basename; use the full file name. + shift + ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@" + fi +fi +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + for ac_prog in cl.exe + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="$ac_tool_prefix$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$CC" && break + done +fi +if test -z "$CC"; then + ac_ct_CC=$CC + for ac_prog in cl.exe +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$ac_ct_CC" && break +done + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +fi + +fi + + +test -z "$CC" && { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } + +# Provide some information about the compiler. +$as_echo "$as_me:$LINENO: checking for C compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +{ (ac_try="$ac_compiler --version >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler --version >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -v >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -v >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -V >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -V >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } + +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +ac_clean_files_save=$ac_clean_files +ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out" +# Try to create an executable without -o first, disregard a.out. +# It will help us diagnose broken compilers, and finding out an intuition +# of exeext. +{ $as_echo "$as_me:$LINENO: checking for C compiler default output file name" >&5 +$as_echo_n "checking for C compiler default output file name... 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We should not override ac_cv_exeext if it was cached, +# so that the user can short-circuit this test for compilers unknown to +# Autoconf. +for ac_file in $ac_files '' +do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) + ;; + [ab].out ) + # We found the default executable, but exeext='' is most + # certainly right. + break;; + *.* ) + if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no; + then :; else + ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + fi + # We set ac_cv_exeext here because the later test for it is not + # safe: cross compilers may not add the suffix if given an `-o' + # argument, so we may need to know it at that point already. + # Even if this section looks crufty: it has the advantage of + # actually working. + break;; + * ) + break;; + esac +done +test "$ac_cv_exeext" = no && ac_cv_exeext= + +else + ac_file='' +fi + +{ $as_echo "$as_me:$LINENO: result: $ac_file" >&5 +$as_echo "$ac_file" >&6; } +if test -z "$ac_file"; then + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + +{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: C compiler cannot create executables +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: C compiler cannot create executables +See \`config.log' for more details." >&2;} + { (exit 77); exit 77; }; }; } +fi + +ac_exeext=$ac_cv_exeext + +# Check that the compiler produces executables we can run. 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" >&6; } +if test "${ac_cv_c_compiler_gnu+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ +#ifndef __GNUC__ + choke me +#endif + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_compiler_gnu=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_compiler_gnu=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext +ac_cv_c_compiler_gnu=$ac_compiler_gnu + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5 +$as_echo "$ac_cv_c_compiler_gnu" >&6; } +if test $ac_compiler_gnu = yes; then + GCC=yes +else + GCC= +fi +ac_test_CFLAGS=${CFLAGS+set} +ac_save_CFLAGS=$CFLAGS +{ $as_echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5 +$as_echo_n "checking whether $CC accepts -g... " >&6; } +if test "${ac_cv_prog_cc_g+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_save_c_werror_flag=$ac_c_werror_flag + ac_c_werror_flag=yes + ac_cv_prog_cc_g=no + CFLAGS="-g" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_cc_g=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + CFLAGS="" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_c_werror_flag=$ac_save_c_werror_flag + CFLAGS="-g" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_cc_g=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + ac_c_werror_flag=$ac_save_c_werror_flag +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5 +$as_echo "$ac_cv_prog_cc_g" >&6; } +if test "$ac_test_CFLAGS" = set; then + CFLAGS=$ac_save_CFLAGS +elif test $ac_cv_prog_cc_g = yes; then + if test "$GCC" = yes; then + CFLAGS="-g -O2" + else + CFLAGS="-g" + fi +else + if test "$GCC" = yes; then + CFLAGS="-O2" + else + CFLAGS= + fi +fi +{ $as_echo "$as_me:$LINENO: checking for $CC option to accept ISO C89" >&5 +$as_echo_n "checking for $CC option to accept ISO C89... " >&6; } +if test "${ac_cv_prog_cc_c89+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_cv_prog_cc_c89=no +ac_save_CC=$CC +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +#include +#include +#include +#include +/* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ +struct buf { int x; }; +FILE * (*rcsopen) (struct buf *, struct stat *, int); +static char *e (p, i) + char **p; + int i; +{ + return p[i]; +} +static char *f (char * (*g) (char **, int), char **p, ...) +{ + char *s; + va_list v; + va_start (v,p); + s = g (p, va_arg (v,int)); + va_end (v); + return s; +} + +/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has + function prototypes and stuff, but not '\xHH' hex character constants. + These don't provoke an error unfortunately, instead are silently treated + as 'x'. The following induces an error, until -std is added to get + proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an + array size at least. It's necessary to write '\x00'==0 to get something + that's true only with -std. */ +int osf4_cc_array ['\x00' == 0 ? 1 : -1]; + +/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters + inside strings and character constants. */ +#define FOO(x) 'x' +int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1]; + +int test (int i, double x); +struct s1 {int (*f) (int a);}; +struct s2 {int (*f) (double a);}; +int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); +int argc; +char **argv; +int +main () +{ +return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; + ; + return 0; +} +_ACEOF +for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \ + -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__" +do + CC="$ac_save_CC $ac_arg" + rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_cc_c89=$ac_arg +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + +fi + +rm -f core conftest.err conftest.$ac_objext + test "x$ac_cv_prog_cc_c89" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC + +fi +# AC_CACHE_VAL +case "x$ac_cv_prog_cc_c89" in + x) + { $as_echo "$as_me:$LINENO: result: none needed" >&5 +$as_echo "none needed" >&6; } ;; + xno) + { $as_echo "$as_me:$LINENO: result: unsupported" >&5 +$as_echo "unsupported" >&6; } ;; + *) + CC="$CC $ac_cv_prog_cc_c89" + { $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5 +$as_echo "$ac_cv_prog_cc_c89" >&6; } ;; +esac + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +DEPDIR="${am__leading_dot}deps" + +ac_config_commands="$ac_config_commands depfiles" + + +am_make=${MAKE-make} +cat > confinc << 'END' +am__doit: + @echo done +.PHONY: am__doit +END +# If we don't find an include directive, just comment out the code. +{ $as_echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5 +$as_echo_n "checking for style of include used by $am_make... " >&6; } +am__include="#" +am__quote= +_am_result=none +# First try GNU make style include. +echo "include confinc" > confmf +# We grep out `Entering directory' and `Leaving directory' +# messages which can occur if `w' ends up in MAKEFLAGS. +# In particular we don't look at `^make:' because GNU make might +# be invoked under some other name (usually "gmake"), in which +# case it prints its new name instead of `make'. +if test "`$am_make -s -f confmf 2> /dev/null | grep -v 'ing directory'`" = "done"; then + am__include=include + am__quote= + _am_result=GNU +fi +# Now try BSD make style include. +if test "$am__include" = "#"; then + echo '.include "confinc"' > confmf + if test "`$am_make -s -f confmf 2> /dev/null`" = "done"; then + am__include=.include + am__quote="\"" + _am_result=BSD + fi +fi + + +{ $as_echo "$as_me:$LINENO: result: $_am_result" >&5 +$as_echo "$_am_result" >&6; } +rm -f confinc confmf + +@%:@ Check whether --enable-dependency-tracking was given. +if test "${enable_dependency_tracking+set}" = set; then + enableval=$enable_dependency_tracking; +fi + +if test "x$enable_dependency_tracking" != xno; then + am_depcomp="$ac_aux_dir/depcomp" + AMDEPBACKSLASH='\' +fi + if test "x$enable_dependency_tracking" != xno; then + AMDEP_TRUE= + AMDEP_FALSE='#' +else + AMDEP_TRUE='#' + AMDEP_FALSE= +fi + + + +depcc="$CC" am_compiler_list= + +{ $as_echo "$as_me:$LINENO: checking dependency style of $depcc" >&5 +$as_echo_n "checking dependency style of $depcc... " >&6; } +if test "${am_cv_CC_dependencies_compiler_type+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then + # We make a subdir and do the tests there. Otherwise we can end up + # making bogus files that we don't know about and never remove. For + # instance it was reported that on HP-UX the gcc test will end up + # making a dummy file named `D' -- because `-MD' means `put the output + # in D'. + mkdir conftest.dir + # Copy depcomp to subdir because otherwise we won't find it if we're + # using a relative directory. + cp "$am_depcomp" conftest.dir + cd conftest.dir + # We will build objects and dependencies in a subdirectory because + # it helps to detect inapplicable dependency modes. For instance + # both Tru64's cc and ICC support -MD to output dependencies as a + # side effect of compilation, but ICC will put the dependencies in + # the current directory while Tru64 will put them in the object + # directory. + mkdir sub + + am_cv_CC_dependencies_compiler_type=none + if test "$am_compiler_list" = ""; then + am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp` + fi + for depmode in $am_compiler_list; do + # Setup a source with many dependencies, because some compilers + # like to wrap large dependency lists on column 80 (with \), and + # we should not choose a depcomp mode which is confused by this. + # + # We need to recreate these files for each test, as the compiler may + # overwrite some of them when testing with obscure command lines. + # This happens at least with the AIX C compiler. + : > sub/conftest.c + for i in 1 2 3 4 5 6; do + echo '#include "conftst'$i'.h"' >> sub/conftest.c + # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with + # Solaris 8's {/usr,}/bin/sh. + touch sub/conftst$i.h + done + echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf + + case $depmode in + nosideeffect) + # after this tag, mechanisms are not by side-effect, so they'll + # only be used when explicitly requested + if test "x$enable_dependency_tracking" = xyes; then + continue + else + break + fi + ;; + none) break ;; + esac + # We check with `-c' and `-o' for the sake of the "dashmstdout" + # mode. It turns out that the SunPro C++ compiler does not properly + # handle `-M -o', and we need to detect this. + if depmode=$depmode \ + source=sub/conftest.c object=sub/conftest.${OBJEXT-o} \ + depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \ + $SHELL ./depcomp $depcc -c -o sub/conftest.${OBJEXT-o} sub/conftest.c \ + >/dev/null 2>conftest.err && + grep sub/conftst1.h sub/conftest.Po > /dev/null 2>&1 && + grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 && + grep sub/conftest.${OBJEXT-o} sub/conftest.Po > /dev/null 2>&1 && + ${MAKE-make} -s -f confmf > /dev/null 2>&1; then + # icc doesn't choke on unknown options, it will just issue warnings + # or remarks (even with -Werror). So we grep stderr for any message + # that says an option was ignored or not supported. + # When given -MP, icc 7.0 and 7.1 complain thusly: + # icc: Command line warning: ignoring option '-M'; no argument required + # The diagnosis changed in icc 8.0: + # icc: Command line remark: option '-MP' not supported + if (grep 'ignoring option' conftest.err || + grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else + am_cv_CC_dependencies_compiler_type=$depmode + break + fi + fi + done + + cd .. + rm -rf conftest.dir +else + am_cv_CC_dependencies_compiler_type=none +fi + +fi +{ $as_echo "$as_me:$LINENO: result: $am_cv_CC_dependencies_compiler_type" >&5 +$as_echo "$am_cv_CC_dependencies_compiler_type" >&6; } +CCDEPMODE=depmode=$am_cv_CC_dependencies_compiler_type + + if + test "x$enable_dependency_tracking" != xno \ + && test "$am_cv_CC_dependencies_compiler_type" = gcc3; then + am__fastdepCC_TRUE= + am__fastdepCC_FALSE='#' +else + am__fastdepCC_TRUE='#' + am__fastdepCC_FALSE= +fi + + +ac_ext=f +ac_compile='$F77 -c $FFLAGS conftest.$ac_ext >&5' +ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_f77_compiler_gnu +if test -n "$ac_tool_prefix"; then + for ac_prog in ifort g77 + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_F77+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$F77"; then + ac_cv_prog_F77="$F77" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_F77="$ac_tool_prefix$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +F77=$ac_cv_prog_F77 +if test -n "$F77"; then + { $as_echo "$as_me:$LINENO: result: $F77" >&5 +$as_echo "$F77" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$F77" && break + done +fi +if test -z "$F77"; then + ac_ct_F77=$F77 + for ac_prog in ifort g77 +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_F77+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_F77"; then + ac_cv_prog_ac_ct_F77="$ac_ct_F77" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_F77="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_F77=$ac_cv_prog_ac_ct_F77 +if test -n "$ac_ct_F77"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_F77" >&5 +$as_echo "$ac_ct_F77" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$ac_ct_F77" && break +done + + if test "x$ac_ct_F77" = x; then + F77="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + F77=$ac_ct_F77 + fi +fi + + +# Provide some information about the compiler. +$as_echo "$as_me:$LINENO: checking for Fortran 77 compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +{ (ac_try="$ac_compiler --version >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler --version >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -v >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -v >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -V >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -V >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +rm -f a.out + +# If we don't use `.F' as extension, the preprocessor is not run on the +# input file. (Note that this only needs to work for GNU compilers.) +ac_save_ext=$ac_ext +ac_ext=F +{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU Fortran 77 compiler" >&5 +$as_echo_n "checking whether we are using the GNU Fortran 77 compiler... " >&6; } +if test "${ac_cv_f77_compiler_gnu+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main +#ifndef __GNUC__ + choke me +#endif + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_compiler_gnu=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_compiler_gnu=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext +ac_cv_f77_compiler_gnu=$ac_compiler_gnu + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_compiler_gnu" >&5 +$as_echo "$ac_cv_f77_compiler_gnu" >&6; } +ac_ext=$ac_save_ext +ac_test_FFLAGS=${FFLAGS+set} +ac_save_FFLAGS=$FFLAGS +FFLAGS= +{ $as_echo "$as_me:$LINENO: checking whether $F77 accepts -g" >&5 +$as_echo_n "checking whether $F77 accepts -g... " >&6; } +if test "${ac_cv_prog_f77_g+set}" = set; then + $as_echo_n "(cached) " >&6 +else + FFLAGS=-g +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_g=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_prog_f77_g=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_g" >&5 +$as_echo "$ac_cv_prog_f77_g" >&6; } +if test "$ac_test_FFLAGS" = set; then + FFLAGS=$ac_save_FFLAGS +elif test $ac_cv_prog_f77_g = yes; then + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-g -O2" + else + FFLAGS="-g" + fi +else + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-O2" + else + FFLAGS= + fi +fi + +if test $ac_compiler_gnu = yes; then + G77=yes +else + G77= +fi +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +ac_ext=f +ac_compile='$F77 -c $FFLAGS conftest.$ac_ext >&5' +ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_f77_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to get verbose linking output from $F77" >&5 +$as_echo_n "checking how to get verbose linking output from $F77... " >&6; } +if test "${ac_cv_prog_f77_v+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_v= +# Try some options frequently used verbose output +for ac_verb in -v -verbose --verbose -V -\#\#\#; do + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_verb" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + # look for -l* and *.a constructs in the output + for ac_arg in $ac_f77_v_output; do + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a | -[lLRu]*) + ac_cv_prog_f77_v=$ac_verb + break 2 ;; + esac + done +done +if test -z "$ac_cv_prog_f77_v"; then + { $as_echo "$as_me:$LINENO: WARNING: cannot determine how to obtain linking information from $F77" >&5 +$as_echo "$as_me: WARNING: cannot determine how to obtain linking information from $F77" >&2;} +fi +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: WARNING: compilation failed" >&5 +$as_echo "$as_me: WARNING: compilation failed" >&2;} +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_v" >&5 +$as_echo "$ac_cv_prog_f77_v" >&6; } +{ $as_echo "$as_me:$LINENO: checking for Fortran 77 libraries of $F77" >&5 +$as_echo_n "checking for Fortran 77 libraries of $F77... " >&6; } +if test "${ac_cv_f77_libs+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "x$FLIBS" != "x"; then + ac_cv_f77_libs="$FLIBS" # Let the user override the test. +else + +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_cv_prog_f77_v" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + +ac_cv_f77_libs= + +# Save positional arguments (if any) +ac_save_positional="$@" + +set X $ac_f77_v_output +while test $@%:@ != 1; do + shift + ac_arg=$1 + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -bI:*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_arg; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi +fi + + ;; + # Ignore these flags. + -lang* | -lcrt*.o | -lc | -lgcc* | -lSystem | -libmil | -LANG:=* | -LIST:* | -LNO:*) + ;; + -lkernel32) + test x"$CYGWIN" != xyes && ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + -[LRuYz]) + # These flags, when seen by themselves, take an argument. + # We remove the space between option and argument and re-iterate + # unless we find an empty arg or a new option (starting with -) + case $2 in + "" | -*);; + *) + ac_arg="$ac_arg$2" + shift; shift + set X $ac_arg "$@" + ;; + esac + ;; + -YP,*) + for ac_j in `$as_echo "$ac_arg" | sed -e 's/-YP,/-L/;s/:/ -L/g'`; do + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_j" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_arg="$ac_arg $ac_j" + ac_cv_f77_libs="$ac_cv_f77_libs $ac_j" +fi + + done + ;; + -[lLR]*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -zallextract*| -zdefaultextract) + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + # Ignore everything else. + esac +done +# restore positional arguments +set X $ac_save_positional; shift + +# We only consider "LD_RUN_PATH" on Solaris systems. If this is seen, +# then we insist that the "run path" must be an absolute path (i.e. it +# must begin with a "/"). +case `(uname -sr) 2>/dev/null` in + "SunOS 5"*) + ac_ld_run_path=`$as_echo "$ac_f77_v_output" | + sed -n 's,^.*LD_RUN_PATH *= *\(/[^ ]*\).*$,-R\1,p'` + test "x$ac_ld_run_path" != x && + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_ld_run_path; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_ld_run_path" +fi + ;; +esac +fi # test "x$[]_AC_LANG_PREFIX[]LIBS" = "x" + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_libs" >&5 +$as_echo "$ac_cv_f77_libs" >&6; } +FLIBS="$ac_cv_f77_libs" + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + +if test "x$CC" != xcc; then + { $as_echo "$as_me:$LINENO: checking whether $CC and cc understand -c and -o together" >&5 +$as_echo_n "checking whether $CC and cc understand -c and -o together... " >&6; } +else + { $as_echo "$as_me:$LINENO: checking whether cc understands -c and -o together" >&5 +$as_echo_n "checking whether cc understands -c and -o together... " >&6; } +fi +set dummy $CC; ac_cc=`$as_echo "$2" | + sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +if { as_var=ac_cv_prog_cc_${ac_cc}_c_o; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +# Make sure it works both with $CC and with simple cc. +# We do the test twice because some compilers refuse to overwrite an +# existing .o file with -o, though they will create one. +ac_try='$CC -c conftest.$ac_ext -o conftest2.$ac_objext >&5' +rm -f conftest2.* +if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; +then + eval ac_cv_prog_cc_${ac_cc}_c_o=yes + if test "x$CC" != xcc; then + # Test first that cc exists at all. + if { ac_try='cc -c conftest.$ac_ext >&5' + { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; }; then + ac_try='cc -c conftest.$ac_ext -o conftest2.$ac_objext >&5' + rm -f conftest2.* + if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; + then + # cc works too. + : + else + # cc exists but doesn't like -o. + eval ac_cv_prog_cc_${ac_cc}_c_o=no + fi + fi + fi +else + eval ac_cv_prog_cc_${ac_cc}_c_o=no +fi +rm -f core conftest* + +fi +if eval test \$ac_cv_prog_cc_${ac_cc}_c_o = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + +cat >>confdefs.h <<\_ACEOF +@%:@define NO_MINUS_C_MINUS_O 1 +_ACEOF + +fi + +# FIXME: we rely on the cache variable name because +# there is no other way. +set dummy $CC +am_cc=`echo $2 | sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +eval am_t=\$ac_cv_prog_cc_${am_cc}_c_o +if test "$am_t" != yes; then + # Losing compiler, so override with the script. + # FIXME: It is wrong to rewrite CC. + # But if we don't then we get into trouble of one sort or another. + # A longer-term fix would be to have automake use am__CC in this case, + # and then we could set am__CC="\$(top_srcdir)/compile \$(CC)" + CC="$am_aux_dir/compile $CC" +fi + + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5 +$as_echo_n "checking how to run the C preprocessor... " >&6; } +# On Suns, sometimes $CPP names a directory. +if test -n "$CPP" && test -d "$CPP"; then + CPP= +fi +if test -z "$CPP"; then + if test "${ac_cv_prog_CPP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # Double quotes because CPP needs to be expanded + for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp" + do + ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@ifdef __STDC__ +@%:@ include +@%:@else +@%:@ include +@%:@endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + break +fi + + done + ac_cv_prog_CPP=$CPP + +fi + CPP=$ac_cv_prog_CPP +else + ac_cv_prog_CPP=$CPP +fi +{ $as_echo "$as_me:$LINENO: result: $CPP" >&5 +$as_echo "$CPP" >&6; } +ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@ifdef __STDC__ +@%:@ include +@%:@else +@%:@ include +@%:@endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + : +else + { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +{ $as_echo "$as_me:$LINENO: checking for X" >&5 +$as_echo_n "checking for X... " >&6; } + + +@%:@ Check whether --with-x was given. +if test "${with_x+set}" = set; then + withval=$with_x; +fi + +# $have_x is `yes', `no', `disabled', or empty when we do not yet know. +if test "x$with_x" = xno; then + # The user explicitly disabled X. + have_x=disabled +else + case $x_includes,$x_libraries in #( + *\'*) { { $as_echo "$as_me:$LINENO: error: cannot use X directory names containing '" >&5 +$as_echo "$as_me: error: cannot use X directory names containing '" >&2;} + { (exit 1); exit 1; }; };; #( + *,NONE | NONE,*) if test "${ac_cv_have_x+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # One or both of the vars are not set, and there is no cached value. +ac_x_includes=no ac_x_libraries=no +rm -f -r conftest.dir +if mkdir conftest.dir; then + cd conftest.dir + cat >Imakefile <<'_ACEOF' +incroot: + @echo incroot='${INCROOT}' +usrlibdir: + @echo usrlibdir='${USRLIBDIR}' +libdir: + @echo libdir='${LIBDIR}' +_ACEOF + if (export CC; ${XMKMF-xmkmf}) >/dev/null 2>/dev/null && test -f Makefile; then + # GNU make sometimes prints "make[1]: Entering...", which would confuse us. + for ac_var in incroot usrlibdir libdir; do + eval "ac_im_$ac_var=\`\${MAKE-make} $ac_var 2>/dev/null | sed -n 's/^$ac_var=//p'\`" + done + # Open Windows xmkmf reportedly sets LIBDIR instead of USRLIBDIR. + for ac_extension in a so sl dylib la dll; do + if test ! -f "$ac_im_usrlibdir/libX11.$ac_extension" && + test -f "$ac_im_libdir/libX11.$ac_extension"; then + ac_im_usrlibdir=$ac_im_libdir; break + fi + done + # Screen out bogus values from the imake configuration. They are + # bogus both because they are the default anyway, and because + # using them would break gcc on systems where it needs fixed includes. + case $ac_im_incroot in + /usr/include) ac_x_includes= ;; + *) test -f "$ac_im_incroot/X11/Xos.h" && ac_x_includes=$ac_im_incroot;; + esac + case $ac_im_usrlibdir in + /usr/lib | /usr/lib64 | /lib | /lib64) ;; + *) test -d "$ac_im_usrlibdir" && ac_x_libraries=$ac_im_usrlibdir ;; + esac + fi + cd .. + rm -f -r conftest.dir +fi + +# Standard set of common directories for X headers. +# Check X11 before X11Rn because it is often a symlink to the current release. +ac_x_header_dirs=' +/usr/X11/include +/usr/X11R6/include +/usr/X11R5/include +/usr/X11R4/include + +/usr/include/X11 +/usr/include/X11R6 +/usr/include/X11R5 +/usr/include/X11R4 + +/usr/local/X11/include +/usr/local/X11R6/include +/usr/local/X11R5/include +/usr/local/X11R4/include + +/usr/local/include/X11 +/usr/local/include/X11R6 +/usr/local/include/X11R5 +/usr/local/include/X11R4 + +/usr/X386/include +/usr/x386/include +/usr/XFree86/include/X11 + +/usr/include +/usr/local/include +/usr/unsupported/include +/usr/athena/include +/usr/local/x11r5/include +/usr/lpp/Xamples/include + +/usr/openwin/include +/usr/openwin/share/include' + +if test "$ac_x_includes" = no; then + # Guess where to find include files, by looking for Xlib.h. + # First, try using that file with no special directory specified. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # We can compile using X headers with no special include directory. +ac_x_includes= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + for ac_dir in $ac_x_header_dirs; do + if test -r "$ac_dir/X11/Xlib.h"; then + ac_x_includes=$ac_dir + break + fi +done +fi + +rm -f conftest.err conftest.$ac_ext +fi # $ac_x_includes = no + +if test "$ac_x_libraries" = no; then + # Check for the libraries. + # See if we find them without any special options. + # Don't add to $LIBS permanently. + ac_save_LIBS=$LIBS + LIBS="-lX11 $LIBS" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +@%:@include +int +main () +{ +XrmInitialize () + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + LIBS=$ac_save_LIBS +# We can link X programs with no special library path. +ac_x_libraries= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS=$ac_save_LIBS +for ac_dir in `$as_echo "$ac_x_includes $ac_x_header_dirs" | sed s/include/lib/g` +do + # Don't even attempt the hair of trying to link an X program! + for ac_extension in a so sl dylib la dll; do + if test -r "$ac_dir/libX11.$ac_extension"; then + ac_x_libraries=$ac_dir + break 2 + fi + done +done +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi # $ac_x_libraries = no + +case $ac_x_includes,$ac_x_libraries in #( + no,* | *,no | *\'*) + # Didn't find X, or a directory has "'" in its name. + ac_cv_have_x="have_x=no";; #( + *) + # Record where we found X for the cache. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$ac_x_includes'\ + ac_x_libraries='$ac_x_libraries'" +esac +fi +;; #( + *) have_x=yes;; + esac + eval "$ac_cv_have_x" +fi # $with_x != no + +if test "$have_x" != yes; then + { $as_echo "$as_me:$LINENO: result: $have_x" >&5 +$as_echo "$have_x" >&6; } + no_x=yes +else + # If each of the values was on the command line, it overrides each guess. + test "x$x_includes" = xNONE && x_includes=$ac_x_includes + test "x$x_libraries" = xNONE && x_libraries=$ac_x_libraries + # Update the cache value to reflect the command line values. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$x_includes'\ + ac_x_libraries='$x_libraries'" + { $as_echo "$as_me:$LINENO: result: libraries $x_libraries, headers $x_includes" >&5 +$as_echo "libraries $x_libraries, headers $x_includes" >&6; } +fi + +if test "$no_x" = yes; then + # Not all programs may use this symbol, but it does not hurt to define it. + +cat >>confdefs.h <<\_ACEOF +@%:@define X_DISPLAY_MISSING 1 +_ACEOF + + X_CFLAGS= X_PRE_LIBS= X_LIBS= X_EXTRA_LIBS= +else + if test -n "$x_includes"; then + X_CFLAGS="$X_CFLAGS -I$x_includes" + fi + + # It would also be nice to do this for all -L options, not just this one. + if test -n "$x_libraries"; then + X_LIBS="$X_LIBS -L$x_libraries" + # For Solaris; some versions of Sun CC require a space after -R and + # others require no space. Words are not sufficient . . . . + { $as_echo "$as_me:$LINENO: checking whether -R must be followed by a space" >&5 +$as_echo_n "checking whether -R must be followed by a space... " >&6; } + ac_xsave_LIBS=$LIBS; LIBS="$LIBS -R$x_libraries" + ac_xsave_c_werror_flag=$ac_c_werror_flag + ac_c_werror_flag=yes + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + X_LIBS="$X_LIBS -R$x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS="$ac_xsave_LIBS -R $x_libraries" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + X_LIBS="$X_LIBS -R $x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: result: neither works" >&5 +$as_echo "neither works" >&6; } +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + ac_c_werror_flag=$ac_xsave_c_werror_flag + LIBS=$ac_xsave_LIBS + fi + + # Check for system-dependent libraries X programs must link with. + # Do this before checking for the system-independent R6 libraries + # (-lICE), since we may need -lsocket or whatever for X linking. + + if test "$ISC" = yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl_s -linet" + else + # Martyn Johnson says this is needed for Ultrix, if the X + # libraries were built with DECnet support. And Karl Berry says + # the Alpha needs dnet_stub (dnet does not exist). + ac_xsave_LIBS="$LIBS"; LIBS="$LIBS $X_LIBS -lX11" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char XOpenDisplay (); +int +main () +{ +return XOpenDisplay (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet... " >&6; } +if test "${ac_cv_lib_dnet_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet" +fi + + if test $ac_cv_lib_dnet_dnet_ntoa = no; then + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet_stub" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet_stub... " >&6; } +if test "${ac_cv_lib_dnet_stub_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet_stub $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_stub_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_stub_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_stub_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_stub_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet_stub" +fi + + fi +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + LIBS="$ac_xsave_LIBS" + + # msh@cis.ufl.edu says -lnsl (and -lsocket) are needed for his 386/AT, + # to get the SysV transport functions. + # Chad R. Larson says the Pyramis MIS-ES running DC/OSx (SVR4) + # needs -lnsl. + # The nsl library prevents programs from opening the X display + # on Irix 5.2, according to T.E. Dickey. + # The functions gethostbyname, getservbyname, and inet_addr are + # in -lbsd on LynxOS 3.0.1/i386, according to Lars Hecking. + { $as_echo "$as_me:$LINENO: checking for gethostbyname" >&5 +$as_echo_n "checking for gethostbyname... " >&6; } +if test "${ac_cv_func_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define gethostbyname to an innocuous variant, in case declares gethostbyname. + For example, HP-UX 11i declares gettimeofday. */ +#define gethostbyname innocuous_gethostbyname + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char gethostbyname (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef gethostbyname + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_gethostbyname || defined __stub___gethostbyname +choke me +#endif + +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_gethostbyname" >&5 +$as_echo "$ac_cv_func_gethostbyname" >&6; } + + if test $ac_cv_func_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5 +$as_echo_n "checking for gethostbyname in -lnsl... " >&6; } +if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lnsl $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_nsl_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_nsl_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5 +$as_echo "$ac_cv_lib_nsl_gethostbyname" >&6; } +if test "x$ac_cv_lib_nsl_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl" +fi + + if test $ac_cv_lib_nsl_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lbsd" >&5 +$as_echo_n "checking for gethostbyname in -lbsd... " >&6; } +if test "${ac_cv_lib_bsd_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lbsd $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_bsd_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_bsd_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_bsd_gethostbyname" >&5 +$as_echo "$ac_cv_lib_bsd_gethostbyname" >&6; } +if test "x$ac_cv_lib_bsd_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lbsd" +fi + + fi + fi + + # lieder@skyler.mavd.honeywell.com says without -lsocket, + # socket/setsockopt and other routines are undefined under SCO ODT + # 2.0. But -lsocket is broken on IRIX 5.2 (and is not necessary + # on later versions), says Simon Leinen: it contains gethostby* + # variants that don't use the name server (or something). -lsocket + # must be given before -lnsl if both are needed. We assume that + # if connect needs -lnsl, so does gethostbyname. + { $as_echo "$as_me:$LINENO: checking for connect" >&5 +$as_echo_n "checking for connect... " >&6; } +if test "${ac_cv_func_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define connect to an innocuous variant, in case declares connect. + For example, HP-UX 11i declares gettimeofday. */ +#define connect innocuous_connect + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char connect (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef connect + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_connect || defined __stub___connect +choke me +#endif + +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_connect" >&5 +$as_echo "$ac_cv_func_connect" >&6; } + + if test $ac_cv_func_connect = no; then + { $as_echo "$as_me:$LINENO: checking for connect in -lsocket" >&5 +$as_echo_n "checking for connect in -lsocket... " >&6; } +if test "${ac_cv_lib_socket_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lsocket $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_socket_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_socket_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5 +$as_echo "$ac_cv_lib_socket_connect" >&6; } +if test "x$ac_cv_lib_socket_connect" = x""yes; then + X_EXTRA_LIBS="-lsocket $X_EXTRA_LIBS" +fi + + fi + + # Guillermo Gomez says -lposix is necessary on A/UX. + { $as_echo "$as_me:$LINENO: checking for remove" >&5 +$as_echo_n "checking for remove... " >&6; } +if test "${ac_cv_func_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define remove to an innocuous variant, in case declares remove. + For example, HP-UX 11i declares gettimeofday. */ +#define remove innocuous_remove + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char remove (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef remove + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_remove || defined __stub___remove +choke me +#endif + +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_remove" >&5 +$as_echo "$ac_cv_func_remove" >&6; } + + if test $ac_cv_func_remove = no; then + { $as_echo "$as_me:$LINENO: checking for remove in -lposix" >&5 +$as_echo_n "checking for remove in -lposix... " >&6; } +if test "${ac_cv_lib_posix_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lposix $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_posix_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_posix_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_posix_remove" >&5 +$as_echo "$ac_cv_lib_posix_remove" >&6; } +if test "x$ac_cv_lib_posix_remove" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lposix" +fi + + fi + + # BSDI BSD/OS 2.1 needs -lipc for XOpenDisplay. + { $as_echo "$as_me:$LINENO: checking for shmat" >&5 +$as_echo_n "checking for shmat... " >&6; } +if test "${ac_cv_func_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define shmat to an innocuous variant, in case declares shmat. + For example, HP-UX 11i declares gettimeofday. */ +#define shmat innocuous_shmat + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char shmat (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef shmat + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_shmat || defined __stub___shmat +choke me +#endif + +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_shmat" >&5 +$as_echo "$ac_cv_func_shmat" >&6; } + + if test $ac_cv_func_shmat = no; then + { $as_echo "$as_me:$LINENO: checking for shmat in -lipc" >&5 +$as_echo_n "checking for shmat in -lipc... " >&6; } +if test "${ac_cv_lib_ipc_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lipc $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ipc_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ipc_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ipc_shmat" >&5 +$as_echo "$ac_cv_lib_ipc_shmat" >&6; } +if test "x$ac_cv_lib_ipc_shmat" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc" +fi + + fi + fi + + # Check for libraries that X11R6 Xt/Xaw programs need. + ac_save_LDFLAGS=$LDFLAGS + test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries" + # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to + # check for ICE first), but we must link in the order -lSM -lICE or + # we get undefined symbols. So assume we have SM if we have ICE. + # These have to be linked with before -lX11, unlike the other + # libraries we check for below, so use a different variable. + # John Interrante, Karl Berry + { $as_echo "$as_me:$LINENO: checking for IceConnectionNumber in -lICE" >&5 +$as_echo_n "checking for IceConnectionNumber in -lICE... " >&6; } +if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lICE $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char IceConnectionNumber (); +int +main () +{ +return IceConnectionNumber (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ICE_IceConnectionNumber=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ICE_IceConnectionNumber=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5 +$as_echo "$ac_cv_lib_ICE_IceConnectionNumber" >&6; } +if test "x$ac_cv_lib_ICE_IceConnectionNumber" = x""yes; then + X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE" +fi + + LDFLAGS=$ac_save_LDFLAGS + +fi + + +ax_enable_matlab= + +@%:@ Check whether --with-matlab-dir was given. +if test "${with_matlab_dir+set}" = set; then + withval=$with_matlab_dir; case $withval in + yes | no) + # Explicitly enable or disable Matlab but determine + # Matlab prefix automatically. + ax_enable_matlab=$withval + ;; + *) + # Enable Matlab and use ARG as the Matlab prefix. + # ARG must be an existing directory. + ax_enable_matlab=yes + MATLAB=`cd "${withval-/}" > /dev/null 2>&1 && pwd` + if test -z "$MATLAB" ; then + { { $as_echo "$as_me:$LINENO: error: invalid value '$withval' for --with-matlab" >&5 +$as_echo "$as_me: error: invalid value '$withval' for --with-matlab" >&2;} + { (exit 1); exit 1; }; } + fi + ;; +esac +fi + +if test x$ax_enable_matlab != xno ; then +{ $as_echo "$as_me:$LINENO: checking for Matlab prefix" >&5 +$as_echo_n "checking for Matlab prefix... " >&6; } +if test "${ax_cv_matlab+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "${MATLAB+set}" = set ; then + ax_cv_matlab=`cd "${MATLAB-/}" > /dev/null 2>&1 && pwd` +else + ax_cv_matlab= + IFS=${IFS= } ; ax_ifs=$IFS ; IFS=: + for ax_dir in ${PATH-/opt/bin:/usr/local/bin:/usr/bin:/bin} ; do + if test -z "$ax_dir" ; then + ax_dir=. + fi + if test -x "$ax_dir/matlab" ; then + ax_dir=`echo "$ax_dir" | sed 's,/bin$,,'` + # Directory sanity check. + ax_cv_matlab=`cd "${ax_dir-/}" > /dev/null 2>&1 && pwd` + if test -n "$ax_cv_matlab" ; then + break + fi + fi + done + IFS=$ax_ifs +fi +if test -z "$ax_cv_matlab" ; then + ax_cv_matlab="not found" +fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_cv_matlab" >&5 +$as_echo "$ax_cv_matlab" >&6; } +if test "$ax_cv_matlab" = "not found" ; then + unset MATLAB +else + # Strip trailing dashes. + MATLAB=`echo "$ax_cv_matlab" | sed 's,/*$,,'` +fi +{ $as_echo "$as_me:$LINENO: checking whether to enable Matlab support" >&5 +$as_echo_n "checking whether to enable Matlab support... " >&6; } +if test x$ax_enable_matlab != xno ; then + if test "${MATLAB+set}" = set && test -d "$MATLAB/extern/include" ; then + ax_enable_matlab=yes + elif test x$ax_enable_matlab = x ; then + ax_enable_matlab=no + else + # Fail if Matlab was explicitly enabled. + { $as_echo "$as_me:$LINENO: result: failure" >&5 +$as_echo "failure" >&6; } + { { $as_echo "$as_me:$LINENO: error: check your Matlab setup" >&5 +$as_echo "$as_me: error: check your Matlab setup" >&2;} + { (exit 1); exit 1; }; } + fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_enable_matlab" >&5 +$as_echo "$ax_enable_matlab" >&6; } +if test x$ax_enable_matlab = xyes ; then + +cat >>confdefs.h <<\_ACEOF +@%:@define HAVE_MATLAB 1 +_ACEOF + +fi +fi + + + + @%:@ Check whether --enable-debugging was given. +if test "${enable_debugging+set}" = set; then + enableval=$enable_debugging; enable_debugging=$enableval +else + enable_debugging=no +fi + + if test "x$enable_debugging" = xyes; then + +cat >>confdefs.h <<\_ACEOF +@%:@define _DEBUG_ 1 +_ACEOF + + fi + + +@%:@ Check whether --with-serial was given. +if test "${with_serial+set}" = set; then + withval=$with_serial; SERIAL_VALUE=$withval +else + SERIAL_VALUE="yes" +fi + + { $as_echo "$as_me:$LINENO: checking for serial compilation" >&5 +$as_echo_n "checking for serial compilation... " >&6; } + if test $SERIAL_VALUE = no; then + NOSERIAL_TRUE= + NOSERIAL_FALSE='#' +else + NOSERIAL_TRUE='#' + NOSERIAL_FALSE= +fi + + { $as_echo "$as_me:$LINENO: result: $SERIAL_VALUE" >&5 +$as_echo "$SERIAL_VALUE" >&6; } + + + +@%:@ Check whether --with-parallel was given. +if test "${with_parallel+set}" = set; then + withval=$with_parallel; PARALLEL_VALUE=$withval +else + PARALLEL_VALUE="yes" +fi + + { $as_echo "$as_me:$LINENO: checking for parallel compilation" >&5 +$as_echo_n "checking for parallel compilation... " >&6; } + if test $PARALLEL_VALUE = no; then + NOPARALLEL_TRUE= + NOPARALLEL_FALSE='#' +else + NOPARALLEL_TRUE='#' + NOPARALLEL_FALSE= +fi + + { $as_echo "$as_me:$LINENO: result: $PARALLEL_VALUE" >&5 +$as_echo "$PARALLEL_VALUE" >&6; } + + if test "$SERIAL_VALUE" != "yes" ; then + if test "$PARALLEL_VALUE" != "yes"; then + { { $as_echo "$as_me:$LINENO: error: cannot request --with-serial=no and --with-parallel=no at the same time!" >&5 +$as_echo "$as_me: error: cannot request --with-serial=no and --with-parallel=no at the same time!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + + +@%:@ Check whether --with-matlab-dir was given. +if test "${with_matlab_dir+set}" = set; then + withval=$with_matlab_dir; MATLAB_ROOT=$withval +else + MATLAB_ROOT="" +fi + + + if test -d "$MATLAB_ROOT"; then + + { $as_echo "$as_me:$LINENO: checking for Matlab headers and libraries in $MATLAB_ROOT" >&5 +$as_echo_n "checking for Matlab headers and libraries in $MATLAB_ROOT... " >&6; } + + HAVE_MATLAB=yes + MATLABINCL=-I"$MATLAB_ROOT/extern/include"; + MEXEXT=`$MATLAB_ROOT/bin/mexext` + MEXEXT=".$MEXEXT" + MEX=$MATLAB_ROOT/bin/mex + + case "${host_os}" in + *linux*) + if test "${host_cpu}" = "x86_64"; + then + MEXLIB=-L"$MATLAB_ROOT/bin/glnxa64/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnxa64/mexFunction.map"; + else + MEXLIB=-L"$MATLAB_ROOT/bin/glnx86/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnx86/mexFunction.map"; + fi + ;; + esac + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_MATLAB_ 1 +_ACEOF + + + + + + + + { $as_echo "$as_me:$LINENO: result: $HAVE_MATLAB" >&5 +$as_echo "$HAVE_MATLAB" >&6; } + else + HAVE_MATLAB=no + fi + + + if test $HAVE_MATLAB = no; then + if test "$SERIAL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: --with-matlab-dir missing. Matlab is needed to run ISSM serially!" >&5 +$as_echo "$as_me: error: --with-matlab-dir missing. Matlab is needed to run ISSM serially!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + if test $HAVE_MATLAB = yes; then + + + +{ $as_echo "$as_me:$LINENO: checking for Matlab version" >&5 +$as_echo_n "checking for Matlab version... " >&6; } +if test "${ax_cv_matlab_version+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "${MATLAB_VERSION+set}" = set ; then + ax_cv_matlab_version=$MATLAB_VERSION +else + ax_cv_matlab_version= + # Loop over all known architectures. The final dot covers + # Matlab R11 and Matlab V4 for Windows. + for ax_arch in alpha glnxa64 glnx86 hp700 hpux ibm_rs sgi sol2 win32 mac maci . ; do + for ax_exec_name in matlab$EXEEXT MATLAB ; do + ax_matlab_exec=$MATLAB/bin/$ax_arch/${ax_exec_name} + if test -f $ax_matlab_exec ; then + # For Matlab R12, the version number is stored in a + # shared library. + ax_matlab_exec_2=`find $MATLAB/bin/$ax_arch -type f -name libmwservices\* -print 2> /dev/null` + if test -n "$ax_matlab_exec_2" ; then + ax_cv_matlab_version=`strings $ax_matlab_exec_2 2> /dev/null | egrep '^\|build_version_\|@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^|build_version_|\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + # For Matlab R11 and Matlab V4, the version number + # is stored in the executable program. + ax_cv_matlab_version=`strings $ax_matlab_exec 2> /dev/null | egrep '^@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + done + if test -n "$ax_cv_matlab_version" ; then + break + fi + done + if test -z "$ax_cv_matlab_version" ; then + ax_cv_matlab_version="not found" + fi +fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_cv_matlab_version" >&5 +$as_echo "$ax_cv_matlab_version" >&6; } +case $ax_cv_matlab_version in + @<:@1-9@:>@.@<:@0-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@.@<:@0-9@:>@) + MATLAB_VERSION=$ax_cv_matlab_version + MATLAB_MAJOR=`echo $MATLAB_VERSION | sed -e 's/^\(@<:@0-9@:>@*\)\.@<:@0-9@:>@*.*/\1/'` + MATLAB_MINOR=`echo $MATLAB_VERSION | sed -e 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` + ;; + *) + if test x$ax_enable_matlab = xyes ; then + { { $as_echo "$as_me:$LINENO: error: can not determine Matlab version number" >&5 +$as_echo "$as_me: error: can not determine Matlab version number" >&2;} + { (exit 1); exit 1; }; } + fi + MATLAB_VERSION= + MATLAB_MAJOR= + MATLAB_MINOR= + ;; +esac + + + +if test x$MATLAB_VERSION != x ; then + +cat >>confdefs.h <<_ACEOF +@%:@define MATLAB_MAJOR $MATLAB_MAJOR +_ACEOF + + +cat >>confdefs.h <<_ACEOF +@%:@define MATLAB_MINOR $MATLAB_MINOR +_ACEOF + +fi + + + largearrays=no + if test $MATLAB_MAJOR -ge 7; then + if test $MATLAB_MINOR -ge 5; then + if test "${host_cpu}" = "x86_64"; then + largearrays=yes + fi + fi + fi + fi + if test x$largearrays = xyes; then + LARGEARRAYS_TRUE= + LARGEARRAYS_FALSE='#' +else + LARGEARRAYS_TRUE='#' + LARGEARRAYS_FALSE= +fi + + + +@%:@ Check whether --with-triangle-dir was given. +if test "${with_triangle_dir+set}" = set; then + withval=$with_triangle_dir; TRIANGLE_ROOT=$withval +else + TRIANGLE_ROOT="" +fi + + { $as_echo "$as_me:$LINENO: checking for Triangle headers and libraries " >&5 +$as_echo_n "checking for Triangle headers and libraries ... " >&6; } + if test -d "$TRIANGLE_ROOT"; then + + + HAVE_TRIANGLE=yes + TRIANGLEINCL=-I$TRIANGLE_ROOT/ + TRIANGLELIB=$TRIANGLE_ROOT/triangle.a + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_TRIANGLE_ 1 +_ACEOF + + + + + else + HAVE_TRIANGLE=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_TRIANGLE" >&5 +$as_echo "$HAVE_TRIANGLE" >&6; } + + { $as_echo "$as_me:$LINENO: checking for triangle and parallel status" >&5 +$as_echo_n "checking for triangle and parallel status... " >&6; } + if test $HAVE_TRIANGLE = no; then + if test "$SERIAL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: --with-triangle-dir missing. Triangle is needed to run ISSM serially!" >&5 +$as_echo "$as_me: error: --with-triangle-dir missing. Triangle is needed to run ISSM serially!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + { $as_echo "$as_me:$LINENO: result: ok" >&5 +$as_echo "ok" >&6; } + + + +@%:@ Check whether --with-metis-dir was given. +if test "${with_metis_dir+set}" = set; then + withval=$with_metis_dir; METIS_ROOT=$withval +else + METIS_ROOT="" +fi + + + if test -d "$METIS_ROOT"; then + + { $as_echo "$as_me:$LINENO: checking for Metis headers and libraries in $METIS_ROOT" >&5 +$as_echo_n "checking for Metis headers and libraries in $METIS_ROOT... " >&6; } + + HAVE_METIS=yes + METISINCL=-I"$METIS_ROOT/Lib" + METISLIB=-L"$METIS_ROOT/ -lmetis" + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_METIS_ 1 +_ACEOF + + + + else + HAVE_METIS=no + fi + + if test $HAVE_METIS = no; then + { { $as_echo "$as_me:$LINENO: error: --with-metis-dir missing. Metis is needed to run ISSM" >&5 +$as_echo "$as_me: error: --with-metis-dir missing. Metis is needed to run ISSM" >&2;} + { (exit 1); exit 1; }; }; + else + { $as_echo "$as_me:$LINENO: result: $HAVE_METIS" >&5 +$as_echo "$HAVE_METIS" >&6; } + fi + + + + + + + + for ac_prog in mpicc hcc mpxlc_r mpxlc mpcc cmpicc +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_MPICC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$MPICC"; then + ac_cv_prog_MPICC="$MPICC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_MPICC="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +MPICC=$ac_cv_prog_MPICC +if test -n "$MPICC"; then + { $as_echo "$as_me:$LINENO: result: $MPICC" >&5 +$as_echo "$MPICC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$MPICC" && break +done +test -n "$MPICC" || MPICC="$CC" + + acx_mpi_save_CC="$CC" + CC="$MPICC" + + + +if test x = x"$MPILIBS"; then + { $as_echo "$as_me:$LINENO: checking for MPI_Init" >&5 +$as_echo_n "checking for MPI_Init... " >&6; } +if test "${ac_cv_func_MPI_Init+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define MPI_Init to an innocuous variant, in case declares MPI_Init. + For example, HP-UX 11i declares gettimeofday. */ +#define MPI_Init innocuous_MPI_Init + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char MPI_Init (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef MPI_Init + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char MPI_Init (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_MPI_Init || defined __stub___MPI_Init +choke me +#endif + +int +main () +{ +return MPI_Init (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_MPI_Init=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_MPI_Init=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_MPI_Init" >&5 +$as_echo "$ac_cv_func_MPI_Init" >&6; } +if test "x$ac_cv_func_MPI_Init" = x""yes; then + MPILIBS=" " +fi + +fi + +if test x = x"$MPILIBS"; then + { $as_echo "$as_me:$LINENO: checking for MPI_Init in -lmpi" >&5 +$as_echo_n "checking for MPI_Init in -lmpi... " >&6; } +if test "${ac_cv_lib_mpi_MPI_Init+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lmpi $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char MPI_Init (); +int +main () +{ +return MPI_Init (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_mpi_MPI_Init=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_mpi_MPI_Init=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_mpi_MPI_Init" >&5 +$as_echo "$ac_cv_lib_mpi_MPI_Init" >&6; } +if test "x$ac_cv_lib_mpi_MPI_Init" = x""yes; then + MPILIBS="-lmpi" +fi + +fi +if test x = x"$MPILIBS"; then + { $as_echo "$as_me:$LINENO: checking for MPI_Init in -lmpich" >&5 +$as_echo_n "checking for MPI_Init in -lmpich... " >&6; } +if test "${ac_cv_lib_mpich_MPI_Init+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lmpich $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char MPI_Init (); +int +main () +{ +return MPI_Init (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_mpich_MPI_Init=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_mpich_MPI_Init=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_mpich_MPI_Init" >&5 +$as_echo "$ac_cv_lib_mpich_MPI_Init" >&6; } +if test "x$ac_cv_lib_mpich_MPI_Init" = x""yes; then + MPILIBS="-lmpich" +fi + +fi + +if test x != x"$MPILIBS"; then + { $as_echo "$as_me:$LINENO: checking for mpi.h" >&5 +$as_echo_n "checking for mpi.h... " >&6; } + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +#include +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + MPILIBS="" + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext +fi + +CC="$acx_mpi_save_CC" + + + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test x = x"$MPILIBS"; then + { { $as_echo "$as_me:$LINENO: error: cannot provide --with-mpi-dir and --with-mpi-lib at the same time!" >&5 +$as_echo "$as_me: error: cannot provide --with-mpi-dir and --with-mpi-lib at the same time!" >&2;} + { (exit 1); exit 1; }; } + : +else + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_MPI_ 1 +_ACEOF + + : +fi + + + +@%:@ Check whether --with-petsc-dir was given. +if test "${with_petsc_dir+set}" = set; then + withval=$with_petsc_dir; PETSC_ROOT=$withval +else + PETSC_ROOT="" +fi + + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ROOT" = "" ; then + { { $as_echo "$as_me:$LINENO: error: missing --with-petsc-dir argument for parallel compilation!" >&5 +$as_echo "$as_me: error: missing --with-petsc-dir argument for parallel compilation!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + +@%:@ Check whether --with-petsc-arch was given. +if test "${with_petsc_arch+set}" = set; then + withval=$with_petsc_arch; PETSC_ARCH=$withval +else + PETSC_ARCH="" +fi + + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ARCH" = "" ; then + { { $as_echo "$as_me:$LINENO: error: missing --with-petsc-arch argument for parallel compilation!" >&5 +$as_echo "$as_me: error: missing --with-petsc-arch argument for parallel compilation!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + { $as_echo "$as_me:$LINENO: checking for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH" >&5 +$as_echo_n "checking for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH... " >&6; } + + if test -d "$PETSC_ROOT"; then + + if test -d "$PETSC_ROOT/bmake/$PETSC_ARCH"; then + + PETSCINCL="-I$PETSC_ROOT/include -I$PETSC_ROOT/ -I$PETSC_ROOT/bmake/$PETSC_ARCH -I$PETSC_ROOT/src/mat/impls/dense/mpi/plapack/" + PETSCLIB="-L$PETSC_ROOT/lib/$PETSC_ARCH -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts" + + + + +cat >>confdefs.h <<\_ACEOF +@%:@define _HAVE_PETSC_ 1 +_ACEOF + + + + + HAVE_PETSC=yes + else + HAVE_PETSC=no + fi + else + HAVE_PETSC=no + fi + + if test $HAVE_PETSC = no; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + { $as_echo "$as_me:$LINENO: result: $HAVE_PETSC" >&5 +$as_echo "$HAVE_PETSC" >&6; } + fi + + + +@%:@ Check whether --with-slepc-dir was given. +if test "${with_slepc_dir+set}" = set; then + withval=$with_slepc_dir; SLEPC_ROOT=$withval +else + SLEPC_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Slepc headers and libraries in $SLEPC_ROOT" >&5 +$as_echo_n "checking for Slepc headers and libraries in $SLEPC_ROOT... 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Set only those that are not. +# We use the long form for the default assignment because of an extremely +# bizarre bug on SunOS 4.1.3. +if $ac_need_defaults; then + test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files + test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers + test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands +fi + +# Have a temporary directory for convenience. Make it in the build tree +# simply because there is no reason against having it here, and in addition, +# creating and moving files from /tmp can sometimes cause problems. +# Hook for its removal unless debugging. +# Note that there is a small window in which the directory will not be cleaned: +# after its creation but before its name has been assigned to `$tmp'. +$debug || +{ + tmp= + trap 'exit_status=$? + { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status +' 0 + trap '{ (exit 1); exit 1; }' 1 2 13 15 +} +# Create a (secure) tmp directory for tmp files. + +{ + tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` && + test -n "$tmp" && test -d "$tmp" +} || +{ + tmp=./conf$$-$RANDOM + (umask 077 && mkdir "$tmp") +} || +{ + $as_echo "$as_me: cannot create a temporary directory in ." >&2 + { (exit 1); exit 1; } +} + +# Set up the scripts for CONFIG_FILES section. +# No need to generate them if there are no CONFIG_FILES. +# This happens for instance with `./config.status config.h'. +if test -n "$CONFIG_FILES"; then + + +ac_cr=' +' +ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' /dev/null` +if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then + ac_cs_awk_cr='\\r' +else + ac_cs_awk_cr=$ac_cr +fi + +echo 'BEGIN {' >"$tmp/subs1.awk" && +_ACEOF + + +{ + echo "cat >conf$$subs.awk <<_ACEOF" && + echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' && + echo "_ACEOF" +} >conf$$subs.sh || + { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5 +$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;} + { (exit 1); exit 1; }; } +ac_delim_num=`echo "$ac_subst_vars" | grep -c '$'` +ac_delim='%!_!# ' +for ac_last_try in false false false false false :; do + . ./conf$$subs.sh || + { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5 +$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;} + { (exit 1); exit 1; }; } + + ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X` + if test $ac_delim_n = $ac_delim_num; then + break + elif $ac_last_try; then + { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5 +$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;} + { (exit 1); exit 1; }; } + else + ac_delim="$ac_delim!$ac_delim _$ac_delim!! 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Preserve backslash +# newline sequences. + +ac_word_re=[_$as_cr_Letters][_$as_cr_alnum]* +sed -n ' +s/.\{148\}/&'"$ac_delim"'/g +t rset +:rset +s/^[ ]*#[ ]*define[ ][ ]*/ / +t def +d +:def +s/\\$// +t bsnl +s/["\\]/\\&/g +s/^ \('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/P["\1"]="\2"\ +D["\1"]=" \3"/p +s/^ \('"$ac_word_re"'\)[ ]*\(.*\)/D["\1"]=" \2"/p +d +:bsnl +s/["\\]/\\&/g +s/^ \('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/P["\1"]="\2"\ +D["\1"]=" \3\\\\\\n"\\/p +t cont +s/^ \('"$ac_word_re"'\)[ ]*\(.*\)/D["\1"]=" \2\\\\\\n"\\/p +t cont +d +:cont +n +s/.\{148\}/&'"$ac_delim"'/g +t clear +:clear +s/\\$// +t bsnlc +s/["\\]/\\&/g; s/^/"/; s/$/"/p +d +:bsnlc +s/["\\]/\\&/g; s/^/"/; s/$/\\\\\\n"\\/p +b cont +' >$CONFIG_STATUS || ac_write_fail=1 + +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 + for (key in D) D_is_set[key] = 1 + FS = "" +} +/^[\t ]*#[\t ]*(define|undef)[\t ]+$ac_word_re([\t (]|\$)/ { + line = \$ 0 + split(line, arg, " ") + if (arg[1] == "#") { + defundef = arg[2] + mac1 = arg[3] + } else { + defundef = substr(arg[1], 2) + mac1 = arg[2] + } + split(mac1, mac2, "(") #) + macro = mac2[1] + prefix = substr(line, 1, index(line, defundef) - 1) + if (D_is_set[macro]) { + # Preserve the white space surrounding the "#". + print prefix "define", macro P[macro] D[macro] + next + } else { + # Replace #undef with comments. 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So we exec the FD to /dev/null, +# effectively closing config.log, so it can be properly (re)opened and +# appended to by config.status. When coming back to configure, we +# need to make the FD available again. +if test "$no_create" != yes; then + ac_cs_success=: + ac_config_status_args= + test "$silent" = yes && + ac_config_status_args="$ac_config_status_args --quiet" + exec 5>/dev/null + $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false + exec 5>>config.log + # Use ||, not &&, to avoid exiting from the if with $? = 1, which + # would make configure fail if this is the last instruction. + $ac_cs_success || { (exit 1); exit 1; } +fi +if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then + { $as_echo "$as_me:$LINENO: WARNING: unrecognized options: $ac_unrecognized_opts" >&5 +$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;} +fi + + Index: /issm/trunk/autom4te.cache/requests =================================================================== --- /issm/trunk/autom4te.cache/requests (revision 1) +++ /issm/trunk/autom4te.cache/requests (revision 1) @@ 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Triangle is needed to run ISSM serially!]) + fi + fi + AC_MSG_RESULT(ok) + + + dnl Metis directory + AC_ARG_WITH([metis-dir], + AS_HELP_STRING([--with-metis-dir = DIR], + [metis root directory. necessary for serial build]), + [METIS_ROOT=$withval],[METIS_ROOT=""]) + + if test -d "$METIS_ROOT"; then + + AC_MSG_CHECKING(for Metis headers and libraries in $METIS_ROOT) + + dnl defaults + HAVE_METIS=yes + METISINCL=-I"$METIS_ROOT/Lib" + METISLIB=-L"$METIS_ROOT/ -lmetis" + + AC_DEFINE([_HAVE_METIS_],[1],[with Metis in ISSM src]) + AC_SUBST([METISINCL]) + AC_SUBST([METISLIB]) + else + HAVE_METIS=no + fi + + if test $HAVE_METIS = no; then + AC_MSG_ERROR([--with-metis-dir missing. Metis is needed to run ISSM]); + else + AC_MSG_RESULT($HAVE_METIS) + fi + + dnl Mpi options! + AC_MSG_CHECKING(for mpi...) + AC_ARG_WITH([mpi-lib], + AS_HELP_STRING([--with-mpi-lib = otions], + [mpi options, for ex: "-L$MPIROOT -lmpich]), + [MPILIB=$withval],[MPILIB=""]) + + AC_ARG_WITH([mpi-include], + AS_HELP_STRING([--with-mpi-include = DIR], + [mpi include directory, necessary for parallel build]), + [MPI_INCLUDE=$withval],[MPI_INCLUDE=""]) + + dnl check that --with-mpi-include and --with-mpi-lib have been provided + if test -z "$MPILIB" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + AC_MSG_ERROR([empty --with-mpi-lib options! MPI is needed to run ISSM in paralle!]) + fi + else + if test -z "$MPI_INCLUDE" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + AC_MSG_ERROR([empty --with-mpi-include directory! MPI is needed to run ISSM in paralle!]) + fi + else + HAVE_MPI=yes + MPIINCL=-I"$MPI_INCLUDE/" + + AC_DEFINE([_HAVE_MPI_],[1],[with Mpi in ISSM src]) + AC_SUBST([MPIINCL]) + AC_SUBST([MPILIB]) + fi + fi + AC_MSG_RESULT(done) + + dnl Petsc directory and architecture + AC_ARG_WITH([petsc-dir], + AS_HELP_STRING([--with-petsc-dir = DIR], + [petsc root directory, necessary for parallel build]), + [PETSC_ROOT=$withval],[PETSC_ROOT=""]) + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ROOT" = "" ; then + AC_MSG_ERROR([missing --with-petsc-dir argument for parallel compilation!]) + fi + fi + + AC_ARG_WITH([petsc-arch], + AS_HELP_STRING([--with-petsc-arch = DIR], + [petsc arch , necessary for parallel build]), + [PETSC_ARCH=$withval],[PETSC_ARCH=""]) + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ARCH" = "" ; then + AC_MSG_ERROR([missing --with-petsc-arch argument for parallel compilation!]) + fi + fi + + AC_MSG_CHECKING(for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH) + + if test -d "$PETSC_ROOT"; then + + if test -d "$PETSC_ROOT/bmake/$PETSC_ARCH"; then + + PETSCINCL="-I$PETSC_ROOT/include -I$PETSC_ROOT/ -I$PETSC_ROOT/bmake/$PETSC_ARCH -I$PETSC_ROOT/src/mat/impls/dense/mpi/plapack/" + PETSCLIB="-L$PETSC_ROOT/lib/$PETSC_ARCH -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts" + + + + AC_DEFINE([_HAVE_PETSC_],[1],[with Petsc in ISSM src]) + AC_SUBST([PETSCINCL]) + AC_SUBST([PETSCLIB]) + + HAVE_PETSC=yes + else + HAVE_PETSC=no + fi + else + HAVE_PETSC=no + fi + + if test $HAVE_PETSC = no; then + if test "$PARALLEL_VALUE" = "yes" ; then + AC_MSG_ERROR([could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!]) + fi + else + AC_MSG_RESULT($HAVE_PETSC) + fi + + + dnl Slepc directory + AC_ARG_WITH([slepc-dir], + AS_HELP_STRING([--with-slepc-dir = DIR], + [slepc root directory]), + [SLEPC_ROOT=$withval],[SLEPC_ROOT=""]) + + AC_MSG_CHECKING(for Slepc headers and libraries in $SLEPC_ROOT) + if test -d "$SLEPC_ROOT"; then + + + dnl defaults + HAVE_SLEPC=yes + SLEPCINCL=-I"$SLEPC_ROOT/include" + SLEPCLIB=-L"$SLEPC_ROOT/lib/ -lslepc" + + AC_DEFINE([_HAVE_SLEPC_],[1],[with Slepc in ISSM src]) + AC_SUBST([SLEPCINCL]) + AC_SUBST([SLEPCLIB]) + else + HAVE_SLEPC=no + fi + AC_MSG_RESULT($HAVE_SLEPC) + + dnl Scalapack directory + AC_ARG_WITH([scalapack-dir], + AS_HELP_STRING([--with-scalapack-dir = DIR], + [scalapack root directory]), + [SCALAPACK_ROOT=$withval],[SCALAPACK_ROOT=""]) + + AC_MSG_CHECKING(for Scalapack headers and libraries in $SCALAPACK_ROOT) + if test -d "$SCALAPACK_ROOT"; then + + + dnl defaults + HAVE_SCALAPACK=yes + SCALAPACKLIB=-L"$SCALAPACK_ROOT/ -lscalapack" + + AC_DEFINE([_HAVE_SCALAPACK_],[1],[with Scalapack in ISSM src]) + AC_SUBST([SCALAPACKLIB]) + else + HAVE_SCALAPACK=no + fi + AC_MSG_RESULT($HAVE_SCALAPACK) + + dnl Blas-lapack directory + AC_ARG_WITH([blas-lapack-dir], + AS_HELP_STRING([--with-blas-lapack-dir = DIR], + [blas-lapack root directory]), + [BLASLAPACK_ROOT=$withval],[BLASLAPACK_ROOT=""]) + + AC_MSG_CHECKING(for Blas and Lapack headers and libraries in $BLASLAPACK_ROOT) + if test -d "$BLASLAPACK_ROOT"; then + + + dnl defaults + HAVE_BLASLAPACK=yes + BLASLAPACKINCL="" + BLASLAPACKLIB=-L"$BLASLAPACK_ROOT -lmkl_lapack -lmkl -lguide" + + AC_DEFINE([_HAVE_BLASLAPACK_],[1],[with Scalapack in ISSM src]) + AC_SUBST([BLASLAPACKLIB]) + AC_SUBST([BLASLAPACKINCL]) + else + HAVE_BLASLAPACK=no + fi + AC_MSG_RESULT($HAVE_BLASLAPACK) + + + dnl Plapack directory + AC_ARG_WITH([plapack-dir], + AS_HELP_STRING([--with-plapack-dir = DIR], + [plapack root directory]), + [PLAPACK_ROOT=$withval],[PLAPACK_ROOT=""]) + + AC_MSG_CHECKING(for Plapack headers and libraries in $PLAPACK_ROOT) + if test -d "$PLAPACK_ROOT"; then + + + dnl defaults + HAVE_PLAPACK=yes + PLAPACKINCL=-I"$PLAPACK_ROOT/INCLUDE" + PLAPACKLIB=-L"$PLAPACK_ROOT/ -lPLAPACK" + + AC_DEFINE([_HAVE_PLAPACK_],[1],[with Plapack in ISSM src]) + AC_SUBST([PLAPACKINCL]) + AC_SUBST([PLAPACKLIB]) + else + HAVE_PLAPACK=no + fi + AC_MSG_RESULT($HAVE_PLAPACK) + + dnl Mumps directory + AC_ARG_WITH([mumps-dir], + AS_HELP_STRING([--with-mumps-dir = DIR], + [mumps root directory]), + [MUMPS_ROOT=$withval],[MUMPS_ROOT=""]) + + AC_MSG_CHECKING(for Mumps headers and libraries in $MUMPS_ROOT) + if test -d "$MUMPS_ROOT"; then + + dnl defaults + HAVE_MUMPS=yes + MUMPSINCL=-I"$MUMPS_ROOT/include" + MUMPSLIB=-L"$MUMPS_ROOT/lib -ldmumps -lcmumps -lpord" + + AC_DEFINE([_HAVE_MUMPS_],[1],[with Mumps in ISSM src]) + AC_SUBST([MUMPSINCL]) + AC_SUBST([MUMPSLIB]) + else + HAVE_MUMPS=no + fi + AC_MSG_RESULT($HAVE_MUMPS) + + dnl Blacs directory + AC_ARG_WITH([blacs-dir], + AS_HELP_STRING([--with-blacs-dir = DIR], + [blacs root directory]), + [BLACS_ROOT=$withval],[BLACS_ROOT=""]) + + AC_MSG_CHECKING(for Blacs headers and libraries in $BLACS_ROOT) + if test -d "$BLACS_ROOT"; then + + dnl defaults + HAVE_BLACS=yes + BLACSINCL="" + BLACSLIB=-L"$BLACS_ROOT/ -lblacs" + + AC_DEFINE([_HAVE_BLACS_],[1],[with Blacs in ISSM src]) + AC_SUBST([BLACSINCL]) + AC_SUBST([BLACSLIB]) + else + HAVE_BLACS=no + fi + AC_MSG_RESULT($HAVE_BLACS) + + + + +]) +m4trace:m4/matlab.m4:104: -1- AC_DEFUN([AX_CFLAGS_WARN_ALL], [dnl +AS_VAR_PUSHDEF([FLAGS],[CFLAGS])dnl +AS_VAR_PUSHDEF([VAR],[ac_cv_cflags_warn_all])dnl +AC_CACHE_CHECK([m4_ifval($1,$1,FLAGS) for maximum warnings], +VAR,[VAR="no, unknown" + AC_LANG_SAVE + AC_LANG_C + ac_save_[]FLAGS="$[]FLAGS" +for ac_arg dnl +in "-pedantic % -Wall" dnl GCC + "-xstrconst % -v" dnl Solaris C + "-std1 % -verbose -w0 -warnprotos" dnl Digital Unix + "-qlanglvl=ansi % -qsrcmsg -qinfo=all:noppt:noppc:noobs:nocnd" dnl AIX + "-ansi -ansiE % -fullwarn" dnl IRIX + "+ESlit % +w1" dnl HP-UX C + "-Xc % -pvctl[,]fullmsg" dnl NEC SX-5 (Super-UX 10) + "-h conform % -h msglevel 2" dnl Cray C (Unicos) + # +do FLAGS="$ac_save_[]FLAGS "`echo $ac_arg | sed -e 's,%%.*,,' -e 's,%,,'` + AC_TRY_COMPILE([],[return 0;], + [VAR=`echo $ac_arg | sed -e 's,.*% *,,'` ; break]) +done + FLAGS="$ac_save_[]FLAGS" + AC_LANG_RESTORE +]) +case ".$VAR" in + .ok|.ok,*) m4_ifvaln($3,$3) ;; + .|.no|.no,*) m4_ifvaln($4,$4,[m4_ifval($2,[ + AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"])]) ;; + *) m4_ifvaln($3,$3,[ + if echo " $[]m4_ifval($1,$1,FLAGS) " | grep " $VAR " 2>&1 >/dev/null + then AC_RUN_LOG([: m4_ifval($1,$1,FLAGS) does contain $VAR]) + else AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR" + fi ]) ;; +esac +AS_VAR_POPDEF([VAR])dnl +AS_VAR_POPDEF([FLAGS])dnl +]) +m4trace:m4/matlab.m4:147: -1- AC_DEFUN([AX_CXXFLAGS_WARN_ALL], [dnl +AS_VAR_PUSHDEF([FLAGS],[CXXFLAGS])dnl +AS_VAR_PUSHDEF([VAR],[ac_cv_cxxflags_warn_all])dnl +AC_CACHE_CHECK([m4_ifval($1,$1,FLAGS) for maximum warnings], +VAR,[VAR="no, unknown" + AC_LANG_SAVE + AC_LANG_CPLUSPLUS + ac_save_[]FLAGS="$[]FLAGS" +for ac_arg dnl +in "-pedantic % -Wall" dnl GCC + "-xstrconst % -v" dnl Solaris C + "-std1 % -verbose -w0 -warnprotos" dnl Digital Unix + "-qlanglvl=ansi % -qsrcmsg -qinfo=all:noppt:noppc:noobs:nocnd" dnl AIX + "-ansi -ansiE % -fullwarn" dnl IRIX + "+ESlit % +w1" dnl HP-UX C + "-Xc % -pvctl[,]fullmsg" dnl NEC SX-5 (Super-UX 10) + "-h conform % -h msglevel 2" dnl Cray C (Unicos) + # +do FLAGS="$ac_save_[]FLAGS "`echo $ac_arg | sed -e 's,%%.*,,' -e 's,%,,'` + AC_TRY_COMPILE([],[return 0;], + [VAR=`echo $ac_arg | sed -e 's,.*% *,,'` ; break]) +done + FLAGS="$ac_save_[]FLAGS" + AC_LANG_RESTORE +]) +case ".$VAR" in + .ok|.ok,*) m4_ifvaln($3,$3) ;; + .|.no|.no,*) m4_ifvaln($4,$4,[m4_ifval($2,[ + AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"])]) ;; + *) m4_ifvaln($3,$3,[ + if echo " $[]m4_ifval($1,$1,FLAGS) " | grep " $VAR " 2>&1 >/dev/null + then AC_RUN_LOG([: m4_ifval($1,$1,FLAGS) does contain $VAR]) + else AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR" + fi ]) ;; +esac +AS_VAR_POPDEF([VAR])dnl +AS_VAR_POPDEF([FLAGS])dnl +]) +m4trace:m4/matlab.m4:226: -1- AC_DEFUN([AX_MATLAB_DIR], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB_VERSION]) +AC_REQUIRE([AC_CANONICAL_HOST]) +ax_matlab_dir="\${datadir}/matlab" +AC_ARG_WITH([matlab-dir], AC_HELP_STRING([--with-matlab-dir=ARG], [use ARG as the top-level installation directory for Matlab files [[$(datadir)/matlab]]]), +[case $withval in + yes | no) + AC_MSG_ERROR([invalid value '$withval' for --with-matlab-dir]) + ;; + *) + ax_matlab_dir=$withval + ;; +esac]) +AC_MSG_CHECKING([for top-level installation directory for Matlab files]) +AC_MSG_RESULT([$ax_matlab_dir]) +matlabdir=$ax_matlab_dir +AC_SUBST([matlabdir]) +matlabverdir="\${matlabdir}/$MATLAB_VERSION" +AC_SUBST([matlabverdir]) +matlabarchdir="\${matlabverdir}/$host" +AC_SUBST([matlabarchdir]) +matlabprivatedir="\${matlabdir}/private" +AC_SUBST([matlabprivatedir]) +matlabprivateverdir="\${matlabverdir}/private" +AC_SUBST([matlabprivateverdir]) +matlabprivatearchdir="\${matlabarchdir}/private" +AC_SUBST([matlabprivatearchdir]) +]) +m4trace:m4/matlab.m4:323: -1- AC_DEFUN([AX_MATLAB_VERSION], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AC_PROG_CC]) +AC_REQUIRE([AX_MATLAB]) +AC_CACHE_CHECK([for Matlab version], [ax_cv_matlab_version], +[if test "${MATLAB_VERSION+set}" = set ; then + ax_cv_matlab_version=$MATLAB_VERSION +else + ax_cv_matlab_version= + # Loop over all known architectures. The final dot covers + # Matlab R11 and Matlab V4 for Windows. + for ax_arch in alpha glnxa64 glnx86 hp700 hpux ibm_rs sgi sol2 win32 mac maci . ; do + for ax_exec_name in matlab$EXEEXT MATLAB ; do + ax_matlab_exec=$MATLAB/bin/$ax_arch/${ax_exec_name} + if test -f $ax_matlab_exec ; then + # For Matlab R12, the version number is stored in a + # shared library. + ax_matlab_exec_2=`find $MATLAB/bin/$ax_arch -type f -name libmwservices\* -print 2> /dev/null` + if test -n "$ax_matlab_exec_2" ; then + ax_cv_matlab_version=`strings $ax_matlab_exec_2 2> /dev/null | egrep '^\|build_version_\|@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^|build_version_|\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + # For Matlab R11 and Matlab V4, the version number + # is stored in the executable program. + ax_cv_matlab_version=`strings $ax_matlab_exec 2> /dev/null | egrep '^@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + done + if test -n "$ax_cv_matlab_version" ; then + break + fi + done + if test -z "$ax_cv_matlab_version" ; then + ax_cv_matlab_version="not found" + fi +fi]) +case $ax_cv_matlab_version in + @<:@1-9@:>@.@<:@0-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@.@<:@0-9@:>@) + MATLAB_VERSION=$ax_cv_matlab_version + MATLAB_MAJOR=`echo $MATLAB_VERSION | sed -e 's/^\(@<:@0-9@:>@*\)\.@<:@0-9@:>@*.*/\1/'` + MATLAB_MINOR=`echo $MATLAB_VERSION | sed -e 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` + ;; + *) + if test x$ax_enable_matlab = xyes ; then + AC_MSG_ERROR([can not determine Matlab version number]) + fi + MATLAB_VERSION= + MATLAB_MAJOR= + MATLAB_MINOR= + ;; +esac +AC_SUBST([MATLAB_VERSION]) +AC_SUBST([MATLAB_MAJOR]) +AC_SUBST([MATLAB_MINOR]) +if test x$MATLAB_VERSION != x ; then + AC_DEFINE_UNQUOTED([MATLAB_MAJOR], [$MATLAB_MAJOR], [Define to the Matlab major version number.]) + AC_DEFINE_UNQUOTED([MATLAB_MINOR], [$MATLAB_MINOR], [Define to the Matlab minor version number.]) +fi +]) +m4trace:m4/matlab.m4:365: -1- AC_DEFUN([AX_REQUIRE_MATLAB_VERSION], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB_VERSION]) +if test x$MATLAB_VERSION = x ; then + AC_MSG_ERROR([can not determine Matlab version number]) +fi +m4_if([$1], [], [], +[AC_MSG_CHECKING([if Matlab version is sufficient]) +ax_version='$1' +case $ax_version in + @<:@1-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@) + ax_major=$ax_version + ax_minor='' + ;; + @<:@1-9@:>@.@<:@0-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@.@<:@0-9@:>@) + ax_major=`echo $ax_version | sed 's/^\(@<:@0-9@:>@*\)\.@<:@0-9@:>@*.*/\1/'` + ax_minor=`echo $ax_version | sed 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` + ;; + *) + AC_MSG_RESULT([failure]) + AC_MSG_NOTICE([report this bug to the responsible package maintainer]) + AC_MSG_ERROR([invalid Matlab version number argument to AX_REQUIRE_MATLAB_VERSION]) + ;; +esac +ax_ans=yes +if test $MATLAB_MAJOR -eq $ax_major ; then + if test x$ax_minor != x && test $MATLAB_MINOR -lt $ax_minor ; then + ax_ans=no + fi +elif test $MATLAB_MAJOR -lt $ax_major ; then + ax_ans=no +fi +AC_MSG_RESULT([$ax_ans]) +if test x$ax_ans = xno ; then + AC_MSG_ERROR([require Matlab version $ax_version or above]) +fi]) +]) +m4trace:m4/matlab.m4:469: -1- AC_DEFUN([AX_MATLAB], [dnl +AC_PREREQ([2.50]) +ax_enable_matlab= +AC_ARG_WITH([matlab-dir], AC_HELP_STRING([--with-matlab-dir=ARG], [check for Matlab [[yes]]]), +[case $withval in + yes | no) + # Explicitly enable or disable Matlab but determine + # Matlab prefix automatically. + ax_enable_matlab=$withval + ;; + *) + # Enable Matlab and use ARG as the Matlab prefix. + # ARG must be an existing directory. + ax_enable_matlab=yes + MATLAB=`cd "${withval-/}" > /dev/null 2>&1 && pwd` + if test -z "$MATLAB" ; then + AC_MSG_ERROR([invalid value '$withval' for --with-matlab]) + fi + ;; +esac]) +if test x$ax_enable_matlab != xno ; then +AC_CACHE_CHECK([for Matlab prefix], [ax_cv_matlab], +[if test "${MATLAB+set}" = set ; then + ax_cv_matlab=`cd "${MATLAB-/}" > /dev/null 2>&1 && pwd` +else + ax_cv_matlab= + IFS=${IFS= } ; ax_ifs=$IFS ; IFS=: + for ax_dir in ${PATH-/opt/bin:/usr/local/bin:/usr/bin:/bin} ; do + if test -z "$ax_dir" ; then + ax_dir=. + fi + if test -x "$ax_dir/matlab" ; then + ax_dir=`echo "$ax_dir" | sed 's,/bin$,,'` + # Directory sanity check. + ax_cv_matlab=`cd "${ax_dir-/}" > /dev/null 2>&1 && pwd` + if test -n "$ax_cv_matlab" ; then + break + fi + fi + done + IFS=$ax_ifs +fi +if test -z "$ax_cv_matlab" ; then + ax_cv_matlab="not found" +fi]) +if test "$ax_cv_matlab" = "not found" ; then + unset MATLAB +else + # Strip trailing dashes. + MATLAB=`echo "$ax_cv_matlab" | sed 's,/*$,,'` +fi +AC_MSG_CHECKING([whether to enable Matlab support]) +if test x$ax_enable_matlab != xno ; then + if test "${MATLAB+set}" = set && test -d "$MATLAB/extern/include" ; then + ax_enable_matlab=yes + elif test x$ax_enable_matlab = x ; then + ax_enable_matlab=no + else + # Fail if Matlab was explicitly enabled. + AC_MSG_RESULT([failure]) + AC_MSG_ERROR([check your Matlab setup]) + fi +fi +AC_MSG_RESULT([$ax_enable_matlab]) +if test x$ax_enable_matlab = xyes ; then + AC_DEFINE([HAVE_MATLAB], [1], [Define if you have Matlab.]) +fi +fi +AC_SUBST([MATLAB]) +]) +m4trace:m4/matlab.m4:481: -1- AC_DEFUN([AX_REQUIRE_MATLAB], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB]) +if test x$ax_enable_matlab = xno ; then + AC_MSG_ERROR([can not enable Matlab support]) +fi +]) +m4trace:m4/matlab.m4:491: -1- AC_DEFUN([AX_MATLAB_CONDITIONAL], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB]) +AM_CONDITIONAL([MATLAB], [test x$ax_enable_matlab = xyes]) +]) +m4trace:m4/matlab.m4:551: -1- AC_DEFUN([AX_PATH_MEX], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB]) +AC_REQUIRE([AX_MEX_OPTIONS]) +AC_REQUIRE([AC_CANONICAL_HOST]) +if test "${MEX+set}" != set ; then + case $host_os in + *cygwin* | *mingw32*) + ax_list='mextool mex mex.bat' + ;; + *) + ax_list='mex' + ;; + esac + AC_PATH_PROGS([MEX], $ax_list, mex, $MATLAB/bin:$PATH) +fi +AC_SUBST([MEX]) +if test "${MEXFLAGS+set}" != set ; then + MEXFLAGS=-O +fi +AC_SUBST([MEXFLAGS]) +if test "${MEXLDADD+set}" != set ; then + MEXLDADD= +fi +AC_SUBST([MEXLDADD]) +]) +m4trace:m4/matlab.m4:625: -1- AC_DEFUN([AX_MEX_OPTIONS], [dnl +AC_PREREQ([2.50]) +mex_options=yes +AC_ARG_WITH([mex-options], AC_HELP_STRING([--with-mex-options=ARG], [use MEX options file ARG [[standard]]]), +[mex_options=$withval]) +AC_MSG_CHECKING([for MEX options file handling]) +case $mex_options in + yes) + AC_MSG_RESULT([standard]) + mexopts_sh= + ;; + no) + AC_MSG_RESULT([disabled]) + mexopts_sh=$ac_aux_dir/noopts.sh + ;; + *) + AC_MSG_RESULT([enabled]) + mexopts_sh=$mex_options + ;; +esac +if test -n "$mexopts_sh" ; then + AC_MSG_CHECKING([whether MEX options file exists]) + if test -f "$mexopts_sh" ; then + AC_MSG_RESULT([yes]) + # Canonicalize file name. + mexopts_sh_dir=`echo "$mexopts_sh" | sed 's,[[^/]]*$,,'` + mexopts_sh_dir=`cd "${mexopts_sh_dir-.}" && pwd` + mexopts_sh_name=`echo "$mexopts_sh" | sed 's,.*/,,'` + mexopts_sh="$mexopts_sh_dir/$mexopts_sh_name" + else + AC_MSG_RESULT([no]) + AC_MSG_ERROR([$mexopts_sh: no such file]) + fi + MEXOPTS="-f $mexopts_sh" +else + MEXOPTS= +fi +AC_SUBST([mexopts_sh]) +AC_SUBST([MEXOPTS]) +]) +m4trace:m4/matlab.m4:711: -1- AC_DEFUN([AX_MEXEXT], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_PATH_MEX]) +AC_CACHE_CHECK([for MEX-file suffix], [ax_cv_mexext], +[if test "${MEXEXT+set}" = set ; then + ax_cv_mexext="$MEXEXT" +else + if test -x ${MATLAB}/bin/mexext ; then + ax_cv_mexext=`${MATLAB}/bin/mexext` + fi +fi +if test "x${ax_cv_mexext}" = "x" ; then + echo 'mexFunction () {}' > ax_c_test.c + $MEX $MEXOPTS $MEXFLAGS -output ax_c_test ax_c_test.c $MEXLDADD 2> /dev/null 1>&2 + if test -f ax_c_test.dll ; then + ax_cv_mexext=dll + elif test -f ax_c_test.mex ; then + ax_cv_mexext=mex + elif test -f ax_c_test.mexaxp ; then + ax_cv_mexext=mexaxp + elif test -f ax_c_test.mexglx ; then + ax_cv_mexext=mexglx + elif test -f ax_c_test.mexa64 ; then + ax_cv_mexext=mexa64 + elif test -f ax_c_test.mexmac ; then + ax_cv_mexext=mexmac + elif test -f ax_c_test.mexmaci ; then + ax_cv_mexext=mexmaci + elif test -f ax_c_test.mexhp7 ; then + ax_cv_mexext=mexhp7 + elif test -f ax_c_test.mexhpux ; then + ax_cv_mexext=mexhpux + elif test -f ax_c_test.mexrs6 ; then + ax_cv_mexext=mexrs6 + elif test -f ax_c_test.mexsg ; then + ax_cv_mexext=mexsg + elif test -f ax_c_test.mexsol ; then + ax_cv_mexext=mexsol + elif test -f ax_c_test.mexs64 ; then + ax_cv_mexext=mexs64 + elif test -f ax_c_test.mexw32 ; then + ax_cv_mexext=mexw32 + elif test -f ax_c_test.mexw64 ; then + ax_cv_mexext=mexw64 + else + ax_cv_mexext=unknown + fi + rm -f ax_c_test* +fi]) +MEXEXT="$ax_cv_mexext" +AC_SUBST([MEXEXT]) +]) +m4trace:m4/matlab.m4:732: -1- AC_DEFUN([AX_DOT_MEXEXT], [dnl +AC_REQUIRE([AX_MEXEXT]) +case $MEXEXT in + .*) + ;; + unknown) + ;; + *) + if test -n "$MEXEXT" ; then + MEXEXT=.$MEXEXT + AC_MSG_RESULT([setting MEX-file suffix to $MEXEXT]) + AC_SUBST([MEXEXT]) + fi + ;; +esac +]) +m4trace:m4/matlab.m4:947: -1- AC_DEFUN([AX_CC_MEX], [dnl +AC_REQUIRE([AX_PATH_MEX]) +AC_REQUIRE([AX_DOT_MEXEXT]) +AC_LANG([C]) + +dnl Source code for the test matlab C program +ac_mex_source='[#include "mex.h" +void mexFunction( int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) { return; }]' + +dnl Check that the test C program can be compiled with mex +ac_exeext_save=$ac_exeext +ac_exeext=$MEXEXT +ac_link_save=$ac_link +ac_link='$MEX $MEXOPTS $MEXFLAGS -output conftest$ac_exeext conftest.$ac_ext $MEXLDADD >&AS_MESSAGE_LOG_FD' +AC_MSG_CHECKING([if mex works]) +AC_LINK_IFELSE([AC_LANG_SOURCE($ac_mex_source)], +[AC_MSG_RESULT([yes])], +[AC_MSG_RESULT([no])]) + +dnl Try to figure out how mex compiles a C program +ax_cv_mex_version= +ac_cv_mex_cppflags= +ac_cv_mex_includes= +ac_cv_mex_cflags= +ac_cv_mex_libs= +ac_cv_mex_ldflags= + +dnl Variable that will be subsituted +MEX_VERSION_C= +MEX_LDFLAGS= +MEX_CPPFLAGS= +MEX_INCLUDES= +MEX_CFLAGS= +MEX_LIBS= +MEX_LDFLAGS= + +AC_MSG_CHECKING([if mex -n works]) +ac_save_MEXOPTS=$MEXOPTS +MEXOPTS="-n $MEXOPTS" +AC_LANG_CONFTEST([AC_LANG_SOURCE($ac_mex_source)]) +(eval echo $as_me:__oline__: \"$ac_link\") >&AS_MESSAGE_LOG_FD +ac_cv_mex_n_output=`eval $ac_link AS_MESSAGE_LOG_FD>&1 2>&1` +ac_cv_mex_n_result=$? +echo "$ac_cv_mex_n_output" >&AS_MESSAGE_LOG_FD +MEXOPTS=$ac_save_MEXOPTS +rm -f conftest* +ac_exeext=$ac_exeext_save +ac_link=$ac_link_save + +if test $ac_cv_mex_n_result -eq 0 ; then + ac_cv_mex_working=yes + AC_MSG_RESULT([$ac_cv_mex_working]) + + dnl Save positional arguments (if any) + ac_save_positional="$[@]" + + set X $ac_cv_mex_n_output + while test $[@%:@] != 1; do + shift + ac_arg=$[1] + case $ac_arg in + *mexversion.c) + ax_cv_mex_version=$ac_arg + ;; + -pthread) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cflags, , + ac_cv_mex_cflags="$ac_cv_mex_cflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + -mt) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cflags, , + ac_cv_mex_cflags="$ac_cv_mex_cflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + -ansi) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + ;; + -D*) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + ;; + -I*) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_includes, , + ac_cv_mex_includes="$ac_cv_mex_includes $ac_arg") + ;; + -f* | -O* | -xO* | -xlibmil ) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cflags, , + ac_cv_mex_cflags="$ac_cv_mex_cflags $ac_arg") + ;; + -l*) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_libs, , + ac_cv_mex_libs="$ac_cv_mex_libs $ac_arg") + ;; + -L) + # When -L is seen by itself, it takes an argument + # We remove the space between option and argument and re-iterate + # unless we find an empty arg or a new option (starting with -) + case $[2] in + "" | -*);; + *) + ac_arg="$ac_arg$[2]" + shift; shift + set X $ac_arg "$[@]" + ;; + esac + ;; + -L* | -Wl,* | -shared | -bundle | -G) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + -undefined) + # the darwin linker undefined option takes and argument + ac_arg="$ac_arg $[2]" + shift + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + # ignore everything else + esac + done + + # restore positional arguments + set X $ac_save_positional; shift + + MEX_VERSION_C=$ax_cv_mex_version + + AC_MSG_CHECKING([for CPPFLAGS needed to build mex objects]) + if test "x$ac_cv_mex_cppflags" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_CPPFLAGS=`echo $ac_cv_mex_cppflags | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_CPPFLAGS]) + fi + AC_MSG_CHECKING([for INCLUDES needed to build mex objects]) + if test "x$ac_cv_mex_includes" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_INCLUDES=`echo $ac_cv_mex_includes | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_INCLUDES]) + fi + AC_MSG_CHECKING([for CFLAGS needed to build mex objects]) + if test "x$ac_cv_mex_cflags" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_CFLAGS=`echo $ac_cv_mex_cflags | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_CFLAGS]) + fi + AC_MSG_CHECKING([for LIBS needed to build mex objects]) + if test "x$ac_cv_mex_libs" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_LIBS=`echo $ac_cv_mex_libs | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_LIBS]) + fi + AC_MSG_CHECKING([for LDFLAGS needed to build mex objects]) + if test "x$ac_cv_mex_ldflags" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_LDFLAGS=`echo $ac_cv_mex_ldflags | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_LDFLAGS]) + fi +else + ac_cv_mex_working=no + AC_MSG_RESULT([$ac_cv_mex_working]) +fi + +AC_SUBST(MEX_VERSION_C) +AC_SUBST(MEX_CPPFLAGS) +AC_SUBST(MEX_INCLUDES) +AC_SUBST(MEX_CFLAGS) +AC_SUBST(MEX_LIBS) +AC_SUBST(MEX_LDFLAGS) + +]) +m4trace:m4/matlab.m4:958: -1- AC_DEFUN([AX_MEX_CONDITIONAL], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_CC_MEX]) +AM_CONDITIONAL(MEX, test x$ac_cv_mex_working = xyes) +AM_CONDITIONAL(MEX_VERSION_C, test x$ax_cv_mex_version != x) +]) +m4trace:m4/matlab.m4:1020: -1- AC_DEFUN([AX_MATLAB_SYS_ZLIB], [dnl +AC_REQUIRE([AX_PATH_MEX]) +AC_LANG([C]) + +ax_matlab_sys_zlib= + +if test x$ax_cv_mexext != xunknown && test x$ax_cv_mexext != x ; then + # Where should we search for libraries + ax_sys_lib_search_path="/lib /usr/lib /usr/local/lib" + + # If this is a 64 bit link box look in the place where redhat keeps libs + if test x$ax_cv_mexext = xmexa64; then + ax_sys_lib_search_path="/lib64 /usr/lib64 /usr/local/lib64 $ax_sys_lib_search_path" + fi + + # set the extension of the library we are looking for + if test x$ax_cv_mexext = xmexmac || test x$ax_cv_mexext = xmexmaci ; then + ax_zlib_lib_ext=".dylib" + else + ax_zlib_lib_ext=".a" + fi + + for lib_path in $ax_sys_lib_search_path ; do + ax_matlab_search_zlib=$lib_path/libz$ax_zlib_lib_ext + + AC_CHECK_FILE([$ax_matlab_search_zlib], + [ + AC_MSG_CHECKING([for gzungetc in $ax_matlab_search_zlib]) + ac_save_LIBS=$LIBS + LIBS="$ax_matlab_search_zlib $LIBS" + AC_LINK_IFELSE( + [ AC_LANG_PROGRAM( ,[[gzungetc();]]) ], + [ + AC_MSG_RESULT([yes]) + ax_matlab_sys_zlib=$ax_matlab_search_zlib + ], + [ AC_MSG_RESULT([no]) ] + ) + LIBS=$ac_save_LIBS + ], ) + + if test x$ax_matlab_sys_zlib != x ; then + break + fi + done +fi + +MATLAB_SYS_ZIB=$ax_matlab_sys_zlib + +AC_SUBST([MATLAB_SYS_ZIB]) + +]) +m4trace:m4/matlab.m4:1119: -1- AC_DEFUN([CHECK_ZLIB], [ +AC_ARG_WITH([zlib], [AS_HELP_STRING([--with-zlib=DIR], [root directory path of zlib installation (defaults to /usr/local or /usr if not found in /usr/local), --without-zlib to disable zlib usage completely])], [], [with_zlib=yes]) + +if test "x$with_zlib" != xno ; then + if test "x$with_zlib" != xyes ; then + ZLIB_HOME=$with_zlib + else + # default locations + ZLIB_HOME=/usr/local + if test ! -f "${ZLIB_HOME}/include/zlib.h" + then + ZLIB_HOME=/usr + fi + fi + + ZLIB_OLD_LDFLAGS=$LDFLAGS + ZLIB_OLD_CPPFLAGS=$LDFLAGS + LDFLAGS="$LDFLAGS -L${ZLIB_HOME}/lib" + CPPFLAGS="$CPPFLAGS -I${ZLIB_HOME}/include" + AC_LANG_PUSH([C]) + AC_CHECK_HEADERS([zlib.h]) + AC_CHECK_LIB([z], [inflateEnd]) + AC_LANG_POP([C]) + + if test "x$ac_cv_header_zlib_h" = "xyes" -a "x$ac_cv_lib_z_inflateEnd" = "xyes" ; then + AC_MSG_RESULT([zlib found in $ZLIB_HOME]) + AC_SUBST([HAVE_LIBZ], [$ac_cv_lib_z_inflateEnd]) + else + LDFLAGS="$ZLIB_OLD_LDFLAGS" + CPPFLAGS="$ZLIB_OLD_CPPFLAGS" + AC_MSG_ERROR(either specify a valid zlib installation with --with-zlib=DIR or disable zlib usage with --without-zlib) + fi +fi]) +m4trace:configure.ac:1: -1- m4_pattern_forbid([^_?A[CHUM]_]) +m4trace:configure.ac:1: -1- m4_pattern_forbid([_AC_]) +m4trace:configure.ac:1: -1- m4_pattern_forbid([^LIBOBJS$], [do not use LIBOBJS directly, use AC_LIBOBJ (see section `AC_LIBOBJ vs LIBOBJS']) +m4trace:configure.ac:1: -1- m4_pattern_allow([^AS_FLAGS$]) +m4trace:configure.ac:1: -1- m4_pattern_forbid([^_?m4_]) +m4trace:configure.ac:1: -1- m4_pattern_forbid([^dnl$]) +m4trace:configure.ac:1: -1- m4_pattern_forbid([^_?AS_]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^SHELL$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PATH_SEPARATOR$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_NAME$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_TARNAME$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_VERSION$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_STRING$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_BUGREPORT$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^exec_prefix$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^prefix$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^program_transform_name$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^bindir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^sbindir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^libexecdir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^datarootdir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^datadir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^sysconfdir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^sharedstatedir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^localstatedir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^includedir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^oldincludedir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^docdir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^infodir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^htmldir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^dvidir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^pdfdir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^psdir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^libdir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^localedir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^mandir$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_NAME$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_TARNAME$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_VERSION$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_STRING$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^PACKAGE_BUGREPORT$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^DEFS$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^ECHO_C$]) +m4trace:configure.ac:1: -1- m4_pattern_allow([^ECHO_N$]) +m4trace:configure.ac:1: 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m4_pattern_allow([^host_vendor$]) +m4trace:configure.ac:3: -1- m4_pattern_allow([^host_os$]) +m4trace:configure.ac:3: -1- m4_pattern_allow([^target$]) +m4trace:configure.ac:3: -1- m4_pattern_allow([^target_cpu$]) +m4trace:configure.ac:3: -1- m4_pattern_allow([^target_vendor$]) +m4trace:configure.ac:3: -1- m4_pattern_allow([^target_os$]) +m4trace:configure.ac:4: -1- AM_INIT_AUTOMAKE +m4trace:configure.ac:4: -1- m4_pattern_allow([^AM_[A-Z]+FLAGS$]) +m4trace:configure.ac:4: -1- AM_SET_CURRENT_AUTOMAKE_VERSION +m4trace:configure.ac:4: -1- AM_AUTOMAKE_VERSION([1.10.2]) +m4trace:configure.ac:4: -1- _AM_AUTOCONF_VERSION([2.63]) +m4trace:configure.ac:4: -1- m4_pattern_allow([^INSTALL_PROGRAM$]) +m4trace:configure.ac:4: -1- m4_pattern_allow([^INSTALL_SCRIPT$]) +m4trace:configure.ac:4: -1- m4_pattern_allow([^INSTALL_DATA$]) +m4trace:configure.ac:4: -1- m4_pattern_allow([^am__isrc$]) +m4trace:configure.ac:4: -1- _AM_SUBST_NOTMAKE([am__isrc]) +m4trace:configure.ac:4: -1- 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We just wanted to have am__tar + # and am__untar set. + test -n "${am_cv_prog_tar_$1}" && break + + # tar/untar a dummy directory, and stop if the command works + rm -rf conftest.dir + mkdir conftest.dir + echo GrepMe > conftest.dir/file + AM_RUN_LOG([tardir=conftest.dir && eval $am__tar_ >conftest.tar]) + rm -rf conftest.dir + if test -s conftest.tar; then + AM_RUN_LOG([$am__untar /dev/null 2>&1 && break + fi +done +rm -rf conftest.dir + +AC_CACHE_VAL([am_cv_prog_tar_$1], [am_cv_prog_tar_$1=$_am_tool]) +AC_MSG_RESULT([$am_cv_prog_tar_$1])]) +AC_SUBST([am__tar]) +AC_SUBST([am__untar]) +]) +m4trace:m4/acx_mpi.m4:181: -1- AC_DEFUN([ACX_MPI], [ +AC_PREREQ(2.50) dnl for AC_LANG_CASE + +AC_LANG_CASE([C], [ + AC_REQUIRE([AC_PROG_CC]) + AC_ARG_VAR(MPICC,[MPI C compiler command]) + AC_CHECK_PROGS(MPICC, mpicc hcc mpxlc_r mpxlc mpcc cmpicc, $CC) + acx_mpi_save_CC="$CC" + CC="$MPICC" + AC_SUBST(MPICC) +], +[C++], [ + AC_REQUIRE([AC_PROG_CXX]) + AC_ARG_VAR(MPICXX,[MPI C++ compiler command]) + AC_CHECK_PROGS(MPICXX, mpic++ mpicxx mpiCC hcp mpxlC_r mpxlC mpCC cmpic++, $CXX) + acx_mpi_save_CXX="$CXX" + CXX="$MPICXX" + AC_SUBST(MPICXX) +], +[Fortran 77], [ + AC_REQUIRE([AC_PROG_F77]) + AC_ARG_VAR(MPIF77,[MPI Fortran 77 compiler command]) + AC_CHECK_PROGS(MPIF77, mpif77 hf77 mpxlf_r mpxlf mpf77 cmpifc, $F77) + acx_mpi_save_F77="$F77" + F77="$MPIF77" + AC_SUBST(MPIF77) +], +[Fortran], [ + AC_REQUIRE([AC_PROG_FC]) + AC_ARG_VAR(MPIFC,[MPI Fortran compiler command]) + AC_CHECK_PROGS(MPIFC, mpif90 mpxlf95_r mpxlf90_r mpxlf95 mpxlf90 mpf90 cmpif90c, $FC) + acx_mpi_save_FC="$FC" + FC="$MPIFC" + AC_SUBST(MPIFC) +]) + +if test x = x"$MPILIBS"; then + AC_LANG_CASE([C], [AC_CHECK_FUNC(MPI_Init, [MPILIBS=" "])], + [C++], [AC_CHECK_FUNC(MPI_Init, [MPILIBS=" "])], + [Fortran 77], [AC_MSG_CHECKING([for MPI_Init]) + AC_LINK_IFELSE([AC_LANG_PROGRAM([],[ call MPI_Init])],[MPILIBS=" " + AC_MSG_RESULT(yes)], [AC_MSG_RESULT(no)])], + [Fortran], [AC_MSG_CHECKING([for MPI_Init]) + AC_LINK_IFELSE([AC_LANG_PROGRAM([],[ call MPI_Init])],[MPILIBS=" " + AC_MSG_RESULT(yes)], [AC_MSG_RESULT(no)])]) +fi +AC_LANG_CASE([Fortran 77], [ + if test x = x"$MPILIBS"; then + AC_CHECK_LIB(fmpi, MPI_Init, [MPILIBS="-lfmpi"]) + fi + if test x = x"$MPILIBS"; then + AC_CHECK_LIB(fmpich, MPI_Init, [MPILIBS="-lfmpich"]) + fi +], +[Fortran], [ + if test x = x"$MPILIBS"; then + AC_CHECK_LIB(fmpi, MPI_Init, [MPILIBS="-lfmpi"]) + fi + if test x = x"$MPILIBS"; then + AC_CHECK_LIB(mpichf90, MPI_Init, [MPILIBS="-lmpichf90"]) + fi +]) +if test x = x"$MPILIBS"; then + AC_CHECK_LIB(mpi, MPI_Init, [MPILIBS="-lmpi"]) +fi +if test x = x"$MPILIBS"; then + AC_CHECK_LIB(mpich, MPI_Init, [MPILIBS="-lmpich"]) +fi + +dnl We have to use AC_TRY_COMPILE and not AC_CHECK_HEADER because the +dnl latter uses $CPP, not $CC (which may be mpicc). +AC_LANG_CASE([C], [if test x != x"$MPILIBS"; then + AC_MSG_CHECKING([for mpi.h]) + AC_TRY_COMPILE([#include ],[],[AC_MSG_RESULT(yes)], [MPILIBS="" + AC_MSG_RESULT(no)]) +fi], +[C++], [if test x != x"$MPILIBS"; then + AC_MSG_CHECKING([for mpi.h]) + AC_TRY_COMPILE([#include ],[],[AC_MSG_RESULT(yes)], [MPILIBS="" + AC_MSG_RESULT(no)]) +fi], +[Fortran 77], [if test x != x"$MPILIBS"; then + AC_MSG_CHECKING([for mpif.h]) + AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],[ include 'mpif.h'])],[AC_MSG_RESULT(yes)], [MPILIBS="" + AC_MSG_RESULT(no)]) +fi], +[Fortran], [if test x != x"$MPILIBS"; then + AC_MSG_CHECKING([for mpif.h]) + AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],[ include 'mpif.h'])],[AC_MSG_RESULT(yes)], [MPILIBS="" + AC_MSG_RESULT(no)]) +fi]) + +AC_LANG_CASE([C], [CC="$acx_mpi_save_CC"], + [C++], [CXX="$acx_mpi_save_CXX"], + [Fortran 77], [F77="$acx_mpi_save_F77"], + [Fortran], [FC="$acx_mpi_save_FC"]) + +AC_SUBST(MPILIBS) + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test x = x"$MPILIBS"; then + $2 + : +else + ifelse([$1],,[AC_DEFINE(HAVE_MPI,1,[Define if you have the MPI library.])],[$1]) + : +fi +]) +m4trace:m4/issm_options.m4:363: -1- AC_DEFUN([ISSM_OPTIONS], [ + dnl Debugging option check. + AC_ARG_ENABLE([debugging],AS_HELP_STRING([--enable-debugging], + [turn debug support on]), + [enable_debugging=$enableval],[enable_debugging=no]) + if test "x$enable_debugging" = xyes; then + AC_DEFINE([_DEBUG_],[1],[Macro to enable debugging in Dakota.]) + fi + + dnl serial build? + AC_ARG_WITH([serial], + AS_HELP_STRING([--with-serial = value], + [serial compilation. ]), + [SERIAL_VALUE=$withval],[SERIAL_VALUE="yes"]) + AC_MSG_CHECKING(for serial compilation) + AM_CONDITIONAL([NOSERIAL], [test $SERIAL_VALUE = no]) + AC_MSG_RESULT($SERIAL_VALUE) + + + dnl parallel build? + AC_ARG_WITH([parallel], + AS_HELP_STRING([--with-parallel = value], + [parallel compilation. ]), + [PARALLEL_VALUE=$withval],[PARALLEL_VALUE="yes"]) + AC_MSG_CHECKING(for parallel compilation) + AM_CONDITIONAL([NOPARALLEL], [test $PARALLEL_VALUE = no]) + AC_MSG_RESULT($PARALLEL_VALUE) + + dnl: check that at least serial or parallel builds have been requested! + if test "$SERIAL_VALUE" != "yes" ; then + if test "$PARALLEL_VALUE" != "yes"; then + AC_MSG_ERROR([cannot request --with-serial=no and --with-parallel=no at the same time!]) + fi + fi + + + dnl Matlab directory + AC_ARG_WITH([matlab-dir], + AS_HELP_STRING([--with-matlab-dir = DIR], + [matlab root directory. necessary for serial build.]), + [MATLAB_ROOT=$withval],[MATLAB_ROOT=""]) + + if test -d "$MATLAB_ROOT"; then + + AC_MSG_CHECKING(for Matlab headers and libraries in $MATLAB_ROOT) + + dnl defaults + HAVE_MATLAB=yes + MATLABINCL=-I"$MATLAB_ROOT/extern/include"; + dnl use matlab provided mexext routine to test for extension + MEXEXT=`$MATLAB_ROOT/bin/mexext` + MEXEXT=".$MEXEXT" + MEX=$MATLAB_ROOT/bin/mex + + dnl OS-dependent variables and checks + case "${host_os}" in + *linux*) + if test "${host_cpu}" = "x86_64"; + then + MEXLIB=-L"$MATLAB_ROOT/bin/glnxa64/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnxa64/mexFunction.map"; + else + MEXLIB=-L"$MATLAB_ROOT/bin/glnx86/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnx86/mexFunction.map"; + fi + ;; + esac + + AC_DEFINE([_HAVE_MATLAB_],[1],[with Matlab in ISSM src]) + AC_SUBST([MATLABINCL]) + AC_SUBST([MEX]) + AC_SUBST([MEXEXT]) + AC_SUBST([MEXLIB]) + AC_SUBST([MEXLINK]) + + AC_MSG_RESULT($HAVE_MATLAB) + else + HAVE_MATLAB=no + fi + + + if test $HAVE_MATLAB = no; then + if test "$SERIAL_VALUE" = "yes" ; then + AC_MSG_ERROR([--with-matlab-dir missing. Matlab is needed to run ISSM serially!]) + fi + fi + + dnl get version number + if test $HAVE_MATLAB = yes; then + AX_MATLAB_VERSION + + dnl if matlab version is 7.5 and more, and if platform is x86_64, then compile with largearray + dnl default is no + largearrays=no + if test $MATLAB_MAJOR -ge 7; then + if test $MATLAB_MINOR -ge 5; then + if test "${host_cpu}" = "x86_64"; then + largearrays=yes + fi + fi + fi + fi + AM_CONDITIONAL(LARGEARRAYS, test x$largearrays = xyes) + + dnl Triangle directory + AC_ARG_WITH([triangle-dir], + AS_HELP_STRING([--with-triangle-dir = DIR], [triangle root directory. necessary for serial build]), + [TRIANGLE_ROOT=$withval],[TRIANGLE_ROOT=""]) + AC_MSG_CHECKING(for Triangle headers and libraries ) + if test -d "$TRIANGLE_ROOT"; then + + + dnl defaults + HAVE_TRIANGLE=yes + TRIANGLEINCL=-I$TRIANGLE_ROOT/ + TRIANGLELIB=$TRIANGLE_ROOT/triangle.a + + AC_DEFINE([_HAVE_TRIANGLE_],[1],[with Triangle in ISSM src]) + AC_SUBST([TRIANGLEINCL]) + AC_SUBST([TRIANGLELIB]) + + else + HAVE_TRIANGLE=no + fi + AC_MSG_RESULT($HAVE_TRIANGLE) + + AC_MSG_CHECKING(for triangle and parallel status) + if test $HAVE_TRIANGLE = no; then + if test "$SERIAL_VALUE" = "yes" ; then + AC_MSG_ERROR([--with-triangle-dir missing. Triangle is needed to run ISSM serially!]) + fi + fi + AC_MSG_RESULT(ok) + + + dnl Metis directory + AC_ARG_WITH([metis-dir], + AS_HELP_STRING([--with-metis-dir = DIR], + [metis root directory. necessary for serial build]), + [METIS_ROOT=$withval],[METIS_ROOT=""]) + + if test -d "$METIS_ROOT"; then + + AC_MSG_CHECKING(for Metis headers and libraries in $METIS_ROOT) + + dnl defaults + HAVE_METIS=yes + METISINCL=-I"$METIS_ROOT/Lib" + METISLIB=-L"$METIS_ROOT/ -lmetis" + + AC_DEFINE([_HAVE_METIS_],[1],[with Metis in ISSM src]) + AC_SUBST([METISINCL]) + AC_SUBST([METISLIB]) + else + HAVE_METIS=no + fi + + if test $HAVE_METIS = no; then + AC_MSG_ERROR([--with-metis-dir missing. Metis is needed to run ISSM]); + else + AC_MSG_RESULT($HAVE_METIS) + fi + + dnl + + ACX_MPI(AC_DEFINE([_HAVE_MPI_],[1],[with Mpi in ISSM src]), AC_MSG_ERROR([cannot provide --with-mpi-dir and --with-mpi-lib at the same time!])) + + dnl Petsc directory and architecture + AC_ARG_WITH([petsc-dir], + AS_HELP_STRING([--with-petsc-dir = DIR], + [petsc root directory, necessary for parallel build]), + [PETSC_ROOT=$withval],[PETSC_ROOT=""]) + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ROOT" = "" ; then + AC_MSG_ERROR([missing --with-petsc-dir argument for parallel compilation!]) + fi + fi + + AC_ARG_WITH([petsc-arch], + AS_HELP_STRING([--with-petsc-arch = DIR], + [petsc arch , necessary for parallel build]), + [PETSC_ARCH=$withval],[PETSC_ARCH=""]) + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ARCH" = "" ; then + AC_MSG_ERROR([missing --with-petsc-arch argument for parallel compilation!]) + fi + fi + + AC_MSG_CHECKING(for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH) + + if test -d "$PETSC_ROOT"; then + + if test -d "$PETSC_ROOT/bmake/$PETSC_ARCH"; then + + PETSCINCL="-I$PETSC_ROOT/include -I$PETSC_ROOT/ -I$PETSC_ROOT/bmake/$PETSC_ARCH -I$PETSC_ROOT/src/mat/impls/dense/mpi/plapack/" + PETSCLIB="-L$PETSC_ROOT/lib/$PETSC_ARCH -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts" + + + + AC_DEFINE([_HAVE_PETSC_],[1],[with Petsc in ISSM src]) + AC_SUBST([PETSCINCL]) + AC_SUBST([PETSCLIB]) + + HAVE_PETSC=yes + else + HAVE_PETSC=no + fi + else + HAVE_PETSC=no + fi + + if test $HAVE_PETSC = no; then + if test "$PARALLEL_VALUE" = "yes" ; then + AC_MSG_ERROR([could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!]) + fi + else + AC_MSG_RESULT($HAVE_PETSC) + fi + + + dnl Slepc directory + AC_ARG_WITH([slepc-dir], + AS_HELP_STRING([--with-slepc-dir = DIR], + [slepc root directory]), + [SLEPC_ROOT=$withval],[SLEPC_ROOT=""]) + + AC_MSG_CHECKING(for Slepc headers and libraries in $SLEPC_ROOT) + if test -d "$SLEPC_ROOT"; then + + + dnl defaults + HAVE_SLEPC=yes + SLEPCINCL=-I"$SLEPC_ROOT/include" + SLEPCLIB=-L"$SLEPC_ROOT/lib/ -lslepc" + + AC_DEFINE([_HAVE_SLEPC_],[1],[with Slepc in ISSM src]) + AC_SUBST([SLEPCINCL]) + AC_SUBST([SLEPCLIB]) + else + HAVE_SLEPC=no + fi + AC_MSG_RESULT($HAVE_SLEPC) + + dnl Scalapack directory + AC_ARG_WITH([scalapack-dir], + AS_HELP_STRING([--with-scalapack-dir = DIR], + [scalapack root directory]), + [SCALAPACK_ROOT=$withval],[SCALAPACK_ROOT=""]) + + AC_MSG_CHECKING(for Scalapack headers and libraries in $SCALAPACK_ROOT) + if test -d "$SCALAPACK_ROOT"; then + + + dnl defaults + HAVE_SCALAPACK=yes + SCALAPACKLIB=-L"$SCALAPACK_ROOT/ -lscalapack" + + AC_DEFINE([_HAVE_SCALAPACK_],[1],[with Scalapack in ISSM src]) + AC_SUBST([SCALAPACKLIB]) + else + HAVE_SCALAPACK=no + fi + AC_MSG_RESULT($HAVE_SCALAPACK) + + dnl Blas-lapack directory + AC_ARG_WITH([blas-lapack-dir], + AS_HELP_STRING([--with-blas-lapack-dir = DIR], + [blas-lapack root directory]), + [BLASLAPACK_ROOT=$withval],[BLASLAPACK_ROOT=""]) + + AC_MSG_CHECKING(for Blas and Lapack headers and libraries in $BLASLAPACK_ROOT) + if test -d "$BLASLAPACK_ROOT"; then + + + dnl defaults + HAVE_BLASLAPACK=yes + BLASLAPACKINCL="" + BLASLAPACKLIB=-L"$BLASLAPACK_ROOT -lmkl_lapack -lmkl -lguide" + + AC_DEFINE([_HAVE_BLASLAPACK_],[1],[with Scalapack in ISSM src]) + AC_SUBST([BLASLAPACKLIB]) + AC_SUBST([BLASLAPACKINCL]) + else + HAVE_BLASLAPACK=no + fi + AC_MSG_RESULT($HAVE_BLASLAPACK) + + + dnl Plapack directory + AC_ARG_WITH([plapack-dir], + AS_HELP_STRING([--with-plapack-dir = DIR], + [plapack root directory]), + [PLAPACK_ROOT=$withval],[PLAPACK_ROOT=""]) + + AC_MSG_CHECKING(for Plapack headers and libraries in $PLAPACK_ROOT) + if test -d "$PLAPACK_ROOT"; then + + + dnl defaults + HAVE_PLAPACK=yes + PLAPACKINCL=-I"$PLAPACK_ROOT/INCLUDE" + PLAPACKLIB=-L"$PLAPACK_ROOT/ -lPLAPACK" + + AC_DEFINE([_HAVE_PLAPACK_],[1],[with Plapack in ISSM src]) + AC_SUBST([PLAPACKINCL]) + AC_SUBST([PLAPACKLIB]) + else + HAVE_PLAPACK=no + fi + AC_MSG_RESULT($HAVE_PLAPACK) + + dnl Mumps directory + AC_ARG_WITH([mumps-dir], + AS_HELP_STRING([--with-mumps-dir = DIR], + [mumps root directory]), + [MUMPS_ROOT=$withval],[MUMPS_ROOT=""]) + + AC_MSG_CHECKING(for Mumps headers and libraries in $MUMPS_ROOT) + if test -d "$MUMPS_ROOT"; then + + dnl defaults + HAVE_MUMPS=yes + MUMPSINCL=-I"$MUMPS_ROOT/include" + MUMPSLIB=-L"$MUMPS_ROOT/lib -ldmumps -lcmumps -lpord" + + AC_DEFINE([_HAVE_MUMPS_],[1],[with Mumps in ISSM src]) + AC_SUBST([MUMPSINCL]) + AC_SUBST([MUMPSLIB]) + else + HAVE_MUMPS=no + fi + AC_MSG_RESULT($HAVE_MUMPS) + + dnl Blacs directory + AC_ARG_WITH([blacs-dir], + AS_HELP_STRING([--with-blacs-dir = DIR], + [blacs root directory]), + [BLACS_ROOT=$withval],[BLACS_ROOT=""]) + + AC_MSG_CHECKING(for Blacs headers and libraries in $BLACS_ROOT) + if test -d "$BLACS_ROOT"; then + + dnl defaults + HAVE_BLACS=yes + BLACSINCL="" + BLACSLIB=-L"$BLACS_ROOT/ -lblacs" + + AC_DEFINE([_HAVE_BLACS_],[1],[with Blacs in ISSM src]) + AC_SUBST([BLACSINCL]) + AC_SUBST([BLACSLIB]) + else + HAVE_BLACS=no + fi + AC_MSG_RESULT($HAVE_BLACS) + + + + +]) +m4trace:m4/matlab.m4:104: -1- AC_DEFUN([AX_CFLAGS_WARN_ALL], [dnl +AS_VAR_PUSHDEF([FLAGS],[CFLAGS])dnl +AS_VAR_PUSHDEF([VAR],[ac_cv_cflags_warn_all])dnl +AC_CACHE_CHECK([m4_ifval($1,$1,FLAGS) for maximum warnings], +VAR,[VAR="no, unknown" + AC_LANG_SAVE + AC_LANG_C + ac_save_[]FLAGS="$[]FLAGS" +for ac_arg dnl +in "-pedantic % -Wall" dnl GCC + "-xstrconst % -v" dnl Solaris C + "-std1 % -verbose -w0 -warnprotos" dnl Digital Unix + "-qlanglvl=ansi % -qsrcmsg -qinfo=all:noppt:noppc:noobs:nocnd" dnl AIX + "-ansi -ansiE % -fullwarn" dnl IRIX + "+ESlit % +w1" dnl HP-UX C + "-Xc % -pvctl[,]fullmsg" dnl NEC SX-5 (Super-UX 10) + "-h conform % -h msglevel 2" dnl Cray C (Unicos) + # +do FLAGS="$ac_save_[]FLAGS "`echo $ac_arg | sed -e 's,%%.*,,' -e 's,%,,'` + AC_TRY_COMPILE([],[return 0;], + [VAR=`echo $ac_arg | sed -e 's,.*% *,,'` ; break]) +done + FLAGS="$ac_save_[]FLAGS" + AC_LANG_RESTORE +]) +case ".$VAR" in + .ok|.ok,*) m4_ifvaln($3,$3) ;; + .|.no|.no,*) m4_ifvaln($4,$4,[m4_ifval($2,[ + AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"])]) ;; + *) m4_ifvaln($3,$3,[ + if echo " $[]m4_ifval($1,$1,FLAGS) " | grep " $VAR " 2>&1 >/dev/null + then AC_RUN_LOG([: m4_ifval($1,$1,FLAGS) does contain $VAR]) + else AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR" + fi ]) ;; +esac +AS_VAR_POPDEF([VAR])dnl +AS_VAR_POPDEF([FLAGS])dnl +]) +m4trace:m4/matlab.m4:147: -1- AC_DEFUN([AX_CXXFLAGS_WARN_ALL], [dnl +AS_VAR_PUSHDEF([FLAGS],[CXXFLAGS])dnl +AS_VAR_PUSHDEF([VAR],[ac_cv_cxxflags_warn_all])dnl +AC_CACHE_CHECK([m4_ifval($1,$1,FLAGS) for maximum warnings], +VAR,[VAR="no, unknown" + AC_LANG_SAVE + AC_LANG_CPLUSPLUS + ac_save_[]FLAGS="$[]FLAGS" +for ac_arg dnl +in "-pedantic % -Wall" dnl GCC + "-xstrconst % -v" dnl Solaris C + "-std1 % -verbose -w0 -warnprotos" dnl Digital Unix + "-qlanglvl=ansi % -qsrcmsg -qinfo=all:noppt:noppc:noobs:nocnd" dnl AIX + "-ansi -ansiE % -fullwarn" dnl IRIX + "+ESlit % +w1" dnl HP-UX C + "-Xc % -pvctl[,]fullmsg" dnl NEC SX-5 (Super-UX 10) + "-h conform % -h msglevel 2" dnl Cray C (Unicos) + # +do FLAGS="$ac_save_[]FLAGS "`echo $ac_arg | sed -e 's,%%.*,,' -e 's,%,,'` + AC_TRY_COMPILE([],[return 0;], + [VAR=`echo $ac_arg | sed -e 's,.*% *,,'` ; break]) +done + FLAGS="$ac_save_[]FLAGS" + AC_LANG_RESTORE +]) +case ".$VAR" in + .ok|.ok,*) m4_ifvaln($3,$3) ;; + .|.no|.no,*) m4_ifvaln($4,$4,[m4_ifval($2,[ + AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"])]) ;; + *) m4_ifvaln($3,$3,[ + if echo " $[]m4_ifval($1,$1,FLAGS) " | grep " $VAR " 2>&1 >/dev/null + then AC_RUN_LOG([: m4_ifval($1,$1,FLAGS) does contain $VAR]) + else AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR" + fi ]) ;; +esac +AS_VAR_POPDEF([VAR])dnl +AS_VAR_POPDEF([FLAGS])dnl +]) +m4trace:m4/matlab.m4:226: -1- AC_DEFUN([AX_MATLAB_DIR], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB_VERSION]) +AC_REQUIRE([AC_CANONICAL_HOST]) +ax_matlab_dir="\${datadir}/matlab" +AC_ARG_WITH([matlab-dir], AC_HELP_STRING([--with-matlab-dir=ARG], [use ARG as the top-level installation directory for Matlab files [[$(datadir)/matlab]]]), +[case $withval in + yes | no) + AC_MSG_ERROR([invalid value '$withval' for --with-matlab-dir]) + ;; + *) + ax_matlab_dir=$withval + ;; +esac]) +AC_MSG_CHECKING([for top-level installation directory for Matlab files]) +AC_MSG_RESULT([$ax_matlab_dir]) +matlabdir=$ax_matlab_dir +AC_SUBST([matlabdir]) +matlabverdir="\${matlabdir}/$MATLAB_VERSION" +AC_SUBST([matlabverdir]) +matlabarchdir="\${matlabverdir}/$host" +AC_SUBST([matlabarchdir]) +matlabprivatedir="\${matlabdir}/private" +AC_SUBST([matlabprivatedir]) +matlabprivateverdir="\${matlabverdir}/private" +AC_SUBST([matlabprivateverdir]) +matlabprivatearchdir="\${matlabarchdir}/private" +AC_SUBST([matlabprivatearchdir]) +]) +m4trace:m4/matlab.m4:323: -1- AC_DEFUN([AX_MATLAB_VERSION], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AC_PROG_CC]) +AC_REQUIRE([AX_MATLAB]) +AC_CACHE_CHECK([for Matlab version], [ax_cv_matlab_version], +[if test "${MATLAB_VERSION+set}" = set ; then + ax_cv_matlab_version=$MATLAB_VERSION +else + ax_cv_matlab_version= + # Loop over all known architectures. The final dot covers + # Matlab R11 and Matlab V4 for Windows. + for ax_arch in alpha glnxa64 glnx86 hp700 hpux ibm_rs sgi sol2 win32 mac maci . ; do + for ax_exec_name in matlab$EXEEXT MATLAB ; do + ax_matlab_exec=$MATLAB/bin/$ax_arch/${ax_exec_name} + if test -f $ax_matlab_exec ; then + # For Matlab R12, the version number is stored in a + # shared library. + ax_matlab_exec_2=`find $MATLAB/bin/$ax_arch -type f -name libmwservices\* -print 2> /dev/null` + if test -n "$ax_matlab_exec_2" ; then + ax_cv_matlab_version=`strings $ax_matlab_exec_2 2> /dev/null | egrep '^\|build_version_\|@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^|build_version_|\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + # For Matlab R11 and Matlab V4, the version number + # is stored in the executable program. + ax_cv_matlab_version=`strings $ax_matlab_exec 2> /dev/null | egrep '^@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + done + if test -n "$ax_cv_matlab_version" ; then + break + fi + done + if test -z "$ax_cv_matlab_version" ; then + ax_cv_matlab_version="not found" + fi +fi]) +case $ax_cv_matlab_version in + @<:@1-9@:>@.@<:@0-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@.@<:@0-9@:>@) + MATLAB_VERSION=$ax_cv_matlab_version + MATLAB_MAJOR=`echo $MATLAB_VERSION | sed -e 's/^\(@<:@0-9@:>@*\)\.@<:@0-9@:>@*.*/\1/'` + MATLAB_MINOR=`echo $MATLAB_VERSION | sed -e 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` + ;; + *) + if test x$ax_enable_matlab = xyes ; then + AC_MSG_ERROR([can not determine Matlab version number]) + fi + MATLAB_VERSION= + MATLAB_MAJOR= + MATLAB_MINOR= + ;; +esac +AC_SUBST([MATLAB_VERSION]) +AC_SUBST([MATLAB_MAJOR]) +AC_SUBST([MATLAB_MINOR]) +if test x$MATLAB_VERSION != x ; then + AC_DEFINE_UNQUOTED([MATLAB_MAJOR], [$MATLAB_MAJOR], [Define to the Matlab major version number.]) + AC_DEFINE_UNQUOTED([MATLAB_MINOR], [$MATLAB_MINOR], [Define to the Matlab minor version number.]) +fi +]) +m4trace:m4/matlab.m4:365: -1- AC_DEFUN([AX_REQUIRE_MATLAB_VERSION], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB_VERSION]) +if test x$MATLAB_VERSION = x ; then + AC_MSG_ERROR([can not determine Matlab version number]) +fi +m4_if([$1], [], [], +[AC_MSG_CHECKING([if Matlab version is sufficient]) +ax_version='$1' +case $ax_version in + @<:@1-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@) + ax_major=$ax_version + ax_minor='' + ;; + @<:@1-9@:>@.@<:@0-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@.@<:@0-9@:>@) + ax_major=`echo $ax_version | sed 's/^\(@<:@0-9@:>@*\)\.@<:@0-9@:>@*.*/\1/'` + ax_minor=`echo $ax_version | sed 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` + ;; + *) + AC_MSG_RESULT([failure]) + AC_MSG_NOTICE([report this bug to the responsible package maintainer]) + AC_MSG_ERROR([invalid Matlab version number argument to AX_REQUIRE_MATLAB_VERSION]) + ;; +esac +ax_ans=yes +if test $MATLAB_MAJOR -eq $ax_major ; then + if test x$ax_minor != x && test $MATLAB_MINOR -lt $ax_minor ; then + ax_ans=no + fi +elif test $MATLAB_MAJOR -lt $ax_major ; then + ax_ans=no +fi +AC_MSG_RESULT([$ax_ans]) +if test x$ax_ans = xno ; then + AC_MSG_ERROR([require Matlab version $ax_version or above]) +fi]) +]) +m4trace:m4/matlab.m4:469: -1- AC_DEFUN([AX_MATLAB], [dnl +AC_PREREQ([2.50]) +ax_enable_matlab= +AC_ARG_WITH([matlab-dir], AC_HELP_STRING([--with-matlab-dir=ARG], [check for Matlab [[yes]]]), +[case $withval in + yes | no) + # Explicitly enable or disable Matlab but determine + # Matlab prefix automatically. + ax_enable_matlab=$withval + ;; + *) + # Enable Matlab and use ARG as the Matlab prefix. + # ARG must be an existing directory. + ax_enable_matlab=yes + MATLAB=`cd "${withval-/}" > /dev/null 2>&1 && pwd` + if test -z "$MATLAB" ; then + AC_MSG_ERROR([invalid value '$withval' for --with-matlab]) + fi + ;; +esac]) +if test x$ax_enable_matlab != xno ; then +AC_CACHE_CHECK([for Matlab prefix], [ax_cv_matlab], +[if test "${MATLAB+set}" = set ; then + ax_cv_matlab=`cd "${MATLAB-/}" > /dev/null 2>&1 && pwd` +else + ax_cv_matlab= + IFS=${IFS= } ; ax_ifs=$IFS ; IFS=: + for ax_dir in ${PATH-/opt/bin:/usr/local/bin:/usr/bin:/bin} ; do + if test -z "$ax_dir" ; then + ax_dir=. + fi + if test -x "$ax_dir/matlab" ; then + ax_dir=`echo "$ax_dir" | sed 's,/bin$,,'` + # Directory sanity check. + ax_cv_matlab=`cd "${ax_dir-/}" > /dev/null 2>&1 && pwd` + if test -n "$ax_cv_matlab" ; then + break + fi + fi + done + IFS=$ax_ifs +fi +if test -z "$ax_cv_matlab" ; then + ax_cv_matlab="not found" +fi]) +if test "$ax_cv_matlab" = "not found" ; then + unset MATLAB +else + # Strip trailing dashes. + MATLAB=`echo "$ax_cv_matlab" | sed 's,/*$,,'` +fi +AC_MSG_CHECKING([whether to enable Matlab support]) +if test x$ax_enable_matlab != xno ; then + if test "${MATLAB+set}" = set && test -d "$MATLAB/extern/include" ; then + ax_enable_matlab=yes + elif test x$ax_enable_matlab = x ; then + ax_enable_matlab=no + else + # Fail if Matlab was explicitly enabled. + AC_MSG_RESULT([failure]) + AC_MSG_ERROR([check your Matlab setup]) + fi +fi +AC_MSG_RESULT([$ax_enable_matlab]) +if test x$ax_enable_matlab = xyes ; then + AC_DEFINE([HAVE_MATLAB], [1], [Define if you have Matlab.]) +fi +fi +AC_SUBST([MATLAB]) +]) +m4trace:m4/matlab.m4:481: -1- AC_DEFUN([AX_REQUIRE_MATLAB], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB]) +if test x$ax_enable_matlab = xno ; then + AC_MSG_ERROR([can not enable Matlab support]) +fi +]) +m4trace:m4/matlab.m4:491: -1- AC_DEFUN([AX_MATLAB_CONDITIONAL], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB]) +AM_CONDITIONAL([MATLAB], [test x$ax_enable_matlab = xyes]) +]) +m4trace:m4/matlab.m4:551: -1- AC_DEFUN([AX_PATH_MEX], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB]) +AC_REQUIRE([AX_MEX_OPTIONS]) +AC_REQUIRE([AC_CANONICAL_HOST]) +if test "${MEX+set}" != set ; then + case $host_os in + *cygwin* | *mingw32*) + ax_list='mextool mex mex.bat' + ;; + *) + ax_list='mex' + ;; + esac + AC_PATH_PROGS([MEX], $ax_list, mex, $MATLAB/bin:$PATH) +fi +AC_SUBST([MEX]) +if test "${MEXFLAGS+set}" != set ; then + MEXFLAGS=-O +fi +AC_SUBST([MEXFLAGS]) +if test "${MEXLDADD+set}" != set ; then + MEXLDADD= +fi +AC_SUBST([MEXLDADD]) +]) +m4trace:m4/matlab.m4:625: -1- AC_DEFUN([AX_MEX_OPTIONS], [dnl +AC_PREREQ([2.50]) +mex_options=yes +AC_ARG_WITH([mex-options], AC_HELP_STRING([--with-mex-options=ARG], [use MEX options file ARG [[standard]]]), +[mex_options=$withval]) +AC_MSG_CHECKING([for MEX options file handling]) +case $mex_options in + yes) + AC_MSG_RESULT([standard]) + mexopts_sh= + ;; + no) + AC_MSG_RESULT([disabled]) + mexopts_sh=$ac_aux_dir/noopts.sh + ;; + *) + AC_MSG_RESULT([enabled]) + mexopts_sh=$mex_options + ;; +esac +if test -n "$mexopts_sh" ; then + AC_MSG_CHECKING([whether MEX options file exists]) + if test -f "$mexopts_sh" ; then + AC_MSG_RESULT([yes]) + # Canonicalize file name. + mexopts_sh_dir=`echo "$mexopts_sh" | sed 's,[[^/]]*$,,'` + mexopts_sh_dir=`cd "${mexopts_sh_dir-.}" && pwd` + mexopts_sh_name=`echo "$mexopts_sh" | sed 's,.*/,,'` + mexopts_sh="$mexopts_sh_dir/$mexopts_sh_name" + else + AC_MSG_RESULT([no]) + AC_MSG_ERROR([$mexopts_sh: no such file]) + fi + MEXOPTS="-f $mexopts_sh" +else + MEXOPTS= +fi +AC_SUBST([mexopts_sh]) +AC_SUBST([MEXOPTS]) +]) +m4trace:m4/matlab.m4:711: -1- AC_DEFUN([AX_MEXEXT], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_PATH_MEX]) +AC_CACHE_CHECK([for MEX-file suffix], [ax_cv_mexext], +[if test "${MEXEXT+set}" = set ; then + ax_cv_mexext="$MEXEXT" +else + if test -x ${MATLAB}/bin/mexext ; then + ax_cv_mexext=`${MATLAB}/bin/mexext` + fi +fi +if test "x${ax_cv_mexext}" = "x" ; then + echo 'mexFunction () {}' > ax_c_test.c + $MEX $MEXOPTS $MEXFLAGS -output ax_c_test ax_c_test.c $MEXLDADD 2> /dev/null 1>&2 + if test -f ax_c_test.dll ; then + ax_cv_mexext=dll + elif test -f ax_c_test.mex ; then + ax_cv_mexext=mex + elif test -f ax_c_test.mexaxp ; then + ax_cv_mexext=mexaxp + elif test -f ax_c_test.mexglx ; then + ax_cv_mexext=mexglx + elif test -f ax_c_test.mexa64 ; then + ax_cv_mexext=mexa64 + elif test -f ax_c_test.mexmac ; then + ax_cv_mexext=mexmac + elif test -f ax_c_test.mexmaci ; then + ax_cv_mexext=mexmaci + elif test -f ax_c_test.mexhp7 ; then + ax_cv_mexext=mexhp7 + elif test -f ax_c_test.mexhpux ; then + ax_cv_mexext=mexhpux + elif test -f ax_c_test.mexrs6 ; then + ax_cv_mexext=mexrs6 + elif test -f ax_c_test.mexsg ; then + ax_cv_mexext=mexsg + elif test -f ax_c_test.mexsol ; then + ax_cv_mexext=mexsol + elif test -f ax_c_test.mexs64 ; then + ax_cv_mexext=mexs64 + elif test -f ax_c_test.mexw32 ; then + ax_cv_mexext=mexw32 + elif test -f ax_c_test.mexw64 ; then + ax_cv_mexext=mexw64 + else + ax_cv_mexext=unknown + fi + rm -f ax_c_test* +fi]) +MEXEXT="$ax_cv_mexext" +AC_SUBST([MEXEXT]) +]) +m4trace:m4/matlab.m4:732: -1- AC_DEFUN([AX_DOT_MEXEXT], [dnl +AC_REQUIRE([AX_MEXEXT]) +case $MEXEXT in + .*) + ;; + unknown) + ;; + *) + if test -n "$MEXEXT" ; then + MEXEXT=.$MEXEXT + AC_MSG_RESULT([setting MEX-file suffix to $MEXEXT]) + AC_SUBST([MEXEXT]) + fi + ;; +esac +]) +m4trace:m4/matlab.m4:947: -1- AC_DEFUN([AX_CC_MEX], [dnl +AC_REQUIRE([AX_PATH_MEX]) +AC_REQUIRE([AX_DOT_MEXEXT]) +AC_LANG([C]) + +dnl Source code for the test matlab C program +ac_mex_source='[#include "mex.h" +void mexFunction( int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) { return; }]' + +dnl Check that the test C program can be compiled with mex +ac_exeext_save=$ac_exeext +ac_exeext=$MEXEXT +ac_link_save=$ac_link +ac_link='$MEX $MEXOPTS $MEXFLAGS -output conftest$ac_exeext conftest.$ac_ext $MEXLDADD >&AS_MESSAGE_LOG_FD' +AC_MSG_CHECKING([if mex works]) +AC_LINK_IFELSE([AC_LANG_SOURCE($ac_mex_source)], +[AC_MSG_RESULT([yes])], +[AC_MSG_RESULT([no])]) + +dnl Try to figure out how mex compiles a C program +ax_cv_mex_version= +ac_cv_mex_cppflags= +ac_cv_mex_includes= +ac_cv_mex_cflags= +ac_cv_mex_libs= +ac_cv_mex_ldflags= + +dnl Variable that will be subsituted +MEX_VERSION_C= +MEX_LDFLAGS= +MEX_CPPFLAGS= +MEX_INCLUDES= +MEX_CFLAGS= +MEX_LIBS= +MEX_LDFLAGS= + +AC_MSG_CHECKING([if mex -n works]) +ac_save_MEXOPTS=$MEXOPTS +MEXOPTS="-n $MEXOPTS" +AC_LANG_CONFTEST([AC_LANG_SOURCE($ac_mex_source)]) +(eval echo $as_me:__oline__: \"$ac_link\") >&AS_MESSAGE_LOG_FD +ac_cv_mex_n_output=`eval $ac_link AS_MESSAGE_LOG_FD>&1 2>&1` +ac_cv_mex_n_result=$? +echo "$ac_cv_mex_n_output" >&AS_MESSAGE_LOG_FD +MEXOPTS=$ac_save_MEXOPTS +rm -f conftest* +ac_exeext=$ac_exeext_save +ac_link=$ac_link_save + +if test $ac_cv_mex_n_result -eq 0 ; then + ac_cv_mex_working=yes + AC_MSG_RESULT([$ac_cv_mex_working]) + + dnl Save positional arguments (if any) + ac_save_positional="$[@]" + + set X $ac_cv_mex_n_output + while test $[@%:@] != 1; do + shift + ac_arg=$[1] + case $ac_arg in + *mexversion.c) + ax_cv_mex_version=$ac_arg + ;; + -pthread) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cflags, , + ac_cv_mex_cflags="$ac_cv_mex_cflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + -mt) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cflags, , + ac_cv_mex_cflags="$ac_cv_mex_cflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + -ansi) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + ;; + -D*) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + ;; + -I*) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_includes, , + ac_cv_mex_includes="$ac_cv_mex_includes $ac_arg") + ;; + -f* | -O* | -xO* | -xlibmil ) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cflags, , + ac_cv_mex_cflags="$ac_cv_mex_cflags $ac_arg") + ;; + -l*) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_libs, , + ac_cv_mex_libs="$ac_cv_mex_libs $ac_arg") + ;; + -L) + # When -L is seen by itself, it takes an argument + # We remove the space between option and argument and re-iterate + # unless we find an empty arg or a new option (starting with -) + case $[2] in + "" | -*);; + *) + ac_arg="$ac_arg$[2]" + shift; shift + set X $ac_arg "$[@]" + ;; + esac + ;; + -L* | -Wl,* | -shared | -bundle | -G) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + -undefined) + # the darwin linker undefined option takes and argument + ac_arg="$ac_arg $[2]" + shift + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + # ignore everything else + esac + done + + # restore positional arguments + set X $ac_save_positional; shift + + MEX_VERSION_C=$ax_cv_mex_version + + AC_MSG_CHECKING([for CPPFLAGS needed to build mex objects]) + if test "x$ac_cv_mex_cppflags" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_CPPFLAGS=`echo $ac_cv_mex_cppflags | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_CPPFLAGS]) + fi + AC_MSG_CHECKING([for INCLUDES needed to build mex objects]) + if test "x$ac_cv_mex_includes" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_INCLUDES=`echo $ac_cv_mex_includes | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_INCLUDES]) + fi + AC_MSG_CHECKING([for CFLAGS needed to build mex objects]) + if test "x$ac_cv_mex_cflags" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_CFLAGS=`echo $ac_cv_mex_cflags | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_CFLAGS]) + fi + AC_MSG_CHECKING([for LIBS needed to build mex objects]) + if test "x$ac_cv_mex_libs" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_LIBS=`echo $ac_cv_mex_libs | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_LIBS]) + fi + AC_MSG_CHECKING([for LDFLAGS needed to build mex objects]) + if test "x$ac_cv_mex_ldflags" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_LDFLAGS=`echo $ac_cv_mex_ldflags | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_LDFLAGS]) + fi +else + ac_cv_mex_working=no + AC_MSG_RESULT([$ac_cv_mex_working]) +fi + +AC_SUBST(MEX_VERSION_C) +AC_SUBST(MEX_CPPFLAGS) +AC_SUBST(MEX_INCLUDES) +AC_SUBST(MEX_CFLAGS) +AC_SUBST(MEX_LIBS) +AC_SUBST(MEX_LDFLAGS) + +]) +m4trace:m4/matlab.m4:958: -1- AC_DEFUN([AX_MEX_CONDITIONAL], [dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_CC_MEX]) +AM_CONDITIONAL(MEX, test x$ac_cv_mex_working = xyes) +AM_CONDITIONAL(MEX_VERSION_C, test x$ax_cv_mex_version != x) +]) +m4trace:m4/matlab.m4:1020: -1- AC_DEFUN([AX_MATLAB_SYS_ZLIB], [dnl +AC_REQUIRE([AX_PATH_MEX]) +AC_LANG([C]) + +ax_matlab_sys_zlib= + +if test x$ax_cv_mexext != xunknown && test x$ax_cv_mexext != x ; then + # Where should we search for libraries + ax_sys_lib_search_path="/lib /usr/lib /usr/local/lib" + + # If this is a 64 bit link box look in the place where redhat keeps libs + if test x$ax_cv_mexext = xmexa64; then + ax_sys_lib_search_path="/lib64 /usr/lib64 /usr/local/lib64 $ax_sys_lib_search_path" + fi + + # set the extension of the library we are looking for + if test x$ax_cv_mexext = xmexmac || test x$ax_cv_mexext = xmexmaci ; then + ax_zlib_lib_ext=".dylib" + else + ax_zlib_lib_ext=".a" + fi + + for lib_path in $ax_sys_lib_search_path ; do + ax_matlab_search_zlib=$lib_path/libz$ax_zlib_lib_ext + + AC_CHECK_FILE([$ax_matlab_search_zlib], + [ + AC_MSG_CHECKING([for gzungetc in $ax_matlab_search_zlib]) + ac_save_LIBS=$LIBS + LIBS="$ax_matlab_search_zlib $LIBS" + AC_LINK_IFELSE( + [ AC_LANG_PROGRAM( ,[[gzungetc();]]) ], + [ + AC_MSG_RESULT([yes]) + ax_matlab_sys_zlib=$ax_matlab_search_zlib + ], + [ AC_MSG_RESULT([no]) ] + ) + LIBS=$ac_save_LIBS + ], ) + + if test x$ax_matlab_sys_zlib != x ; then + break + fi + done +fi + +MATLAB_SYS_ZIB=$ax_matlab_sys_zlib + +AC_SUBST([MATLAB_SYS_ZIB]) + +]) +m4trace:m4/matlab.m4:1119: -1- AC_DEFUN([CHECK_ZLIB], [ +AC_ARG_WITH([zlib], [AS_HELP_STRING([--with-zlib=DIR], [root directory path of zlib installation (defaults to /usr/local or /usr if not found in /usr/local), --without-zlib to disable zlib usage completely])], [], [with_zlib=yes]) + +if test "x$with_zlib" != xno ; then + if test "x$with_zlib" != xyes ; then + ZLIB_HOME=$with_zlib + else + # default locations + ZLIB_HOME=/usr/local + if test ! -f "${ZLIB_HOME}/include/zlib.h" + then + ZLIB_HOME=/usr + fi + fi + + ZLIB_OLD_LDFLAGS=$LDFLAGS + ZLIB_OLD_CPPFLAGS=$LDFLAGS + LDFLAGS="$LDFLAGS -L${ZLIB_HOME}/lib" + CPPFLAGS="$CPPFLAGS -I${ZLIB_HOME}/include" + AC_LANG_PUSH([C]) + AC_CHECK_HEADERS([zlib.h]) + AC_CHECK_LIB([z], [inflateEnd]) + AC_LANG_POP([C]) + + if test "x$ac_cv_header_zlib_h" = "xyes" -a "x$ac_cv_lib_z_inflateEnd" = "xyes" ; then + AC_MSG_RESULT([zlib found in $ZLIB_HOME]) + AC_SUBST([HAVE_LIBZ], [$ac_cv_lib_z_inflateEnd]) + else + LDFLAGS="$ZLIB_OLD_LDFLAGS" + 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/issm/trunk/compile (revision 1) @@ -0,0 +1,1 @@ +link /u/wilkes-r1b/larour/Bin/automake/share/automake-1.10/compile Index: /issm/trunk/config.guess =================================================================== --- /issm/trunk/config.guess (revision 1) +++ /issm/trunk/config.guess (revision 1) @@ -0,0 +1,1 @@ +link /u/wilkes-r1b/larour/Bin/automake/share/automake-1.10/config.guess Index: /issm/trunk/config.h.in =================================================================== --- /issm/trunk/config.h.in (revision 1) +++ /issm/trunk/config.h.in (revision 1) @@ -0,0 +1,73 @@ +/* config.h.in. Generated from configure.ac by autoheader. */ + +/* Define if you have Matlab. */ +#undef HAVE_MATLAB + +/* Define to the Matlab major version number. */ +#undef MATLAB_MAJOR + +/* Define to the Matlab minor version number. */ +#undef MATLAB_MINOR + +/* Define to 1 if your C compiler doesn't accept -c and -o together. */ +#undef NO_MINUS_C_MINUS_O + +/* Name of package */ +#undef PACKAGE + +/* Define to the address where bug reports for this package should be sent. */ +#undef PACKAGE_BUGREPORT + +/* Define to the full name of this package. */ +#undef PACKAGE_NAME + +/* Define to the full name and version of this package. */ +#undef PACKAGE_STRING + +/* Define to the one symbol short name of this package. */ +#undef PACKAGE_TARNAME + +/* Define to the version of this package. */ +#undef PACKAGE_VERSION + +/* Version number of package */ +#undef VERSION + +/* Define to 1 if the X Window System is missing or not being used. */ +#undef X_DISPLAY_MISSING + +/* Macro to enable debugging in Dakota. */ +#undef _DEBUG_ + +/* with Blacs in ISSM src */ +#undef _HAVE_BLACS_ + +/* with Scalapack in ISSM src */ +#undef _HAVE_BLASLAPACK_ + +/* with Matlab in ISSM src */ +#undef _HAVE_MATLAB_ + +/* with Metis in ISSM src */ +#undef _HAVE_METIS_ + +/* with Mpi in ISSM src */ +#undef _HAVE_MPI_ + +/* with Mumps in ISSM src */ +#undef _HAVE_MUMPS_ + +/* with Petsc in ISSM src */ +#undef _HAVE_PETSC_ + +/* with Plapack in ISSM src */ +#undef _HAVE_PLAPACK_ + +/* with Scalapack in ISSM src */ +#undef _HAVE_SCALAPACK_ + +/* with Slepc in ISSM src */ +#undef _HAVE_SLEPC_ + +/* with Triangle in ISSM src */ +#undef _HAVE_TRIANGLE_ Index: /issm/trunk/config.sub =================================================================== --- /issm/trunk/config.sub (revision 1) +++ /issm/trunk/config.sub (revision 1) @@ -0,0 +1,1 @@ +link /u/wilkes-r1b/larour/Bin/automake/share/automake-1.10/config.sub Index: /issm/trunk/configure =================================================================== --- /issm/trunk/configure (revision 1) +++ /issm/trunk/configure (revision 1) @@ -0,0 +1,8744 @@ +#! /bin/sh +# Guess values for system-dependent variables and create Makefiles. +# Generated by GNU Autoconf 2.63 for ISSM 1.0. +# +# Report bugs to >. +# +# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, +# 2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# This configure script is free software; the Free Software Foundation +# gives unlimited permission to copy, distribute and modify it. +## --------------------- ## +## M4sh Initialization. ## +## --------------------- ## + +# Be more Bourne compatible +DUALCASE=1; export DUALCASE # for MKS sh +if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then + emulate sh + NULLCMD=: + # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which + # is contrary to our usage. Disable this feature. + alias -g '${1+"$@"}'='"$@"' + setopt NO_GLOB_SUBST +else + case `(set -o) 2>/dev/null` in + *posix*) set -o posix ;; +esac + +fi + + + + +# PATH needs CR +# Avoid depending upon Character Ranges. +as_cr_letters='abcdefghijklmnopqrstuvwxyz' +as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ' +as_cr_Letters=$as_cr_letters$as_cr_LETTERS +as_cr_digits='0123456789' +as_cr_alnum=$as_cr_Letters$as_cr_digits + +as_nl=' +' +export as_nl +# Printing a long string crashes Solaris 7 /usr/bin/printf. +as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\' +as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo +as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo +if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then + as_echo='printf %s\n' + as_echo_n='printf %s' +else + if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then + as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"' + as_echo_n='/usr/ucb/echo -n' + else + as_echo_body='eval expr "X$1" : "X\\(.*\\)"' + as_echo_n_body='eval + arg=$1; + case $arg in + *"$as_nl"*) + expr "X$arg" : "X\\(.*\\)$as_nl"; + arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;; + esac; + expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl" + ' + export as_echo_n_body + as_echo_n='sh -c $as_echo_n_body as_echo' + fi + export as_echo_body + as_echo='sh -c $as_echo_body as_echo' +fi + +# The user is always right. +if test "${PATH_SEPARATOR+set}" != set; then + PATH_SEPARATOR=: + (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && { + (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 || + PATH_SEPARATOR=';' + } +fi + +# Support unset when possible. +if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then + as_unset=unset +else + as_unset=false +fi + + +# IFS +# We need space, tab and new line, in precisely that order. Quoting is +# there to prevent editors from complaining about space-tab. +# (If _AS_PATH_WALK were called with IFS unset, it would disable word +# splitting by setting IFS to empty value.) +IFS=" "" $as_nl" + +# Find who we are. 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See below for descriptions of some of the useful variables. + +Defaults for the options are specified in brackets. + +Configuration: + -h, --help display this help and exit + --help=short display options specific to this package + --help=recursive display the short help of all the included packages + -V, --version display version information and exit + -q, --quiet, --silent do not print \`checking...' messages + --cache-file=FILE cache test results in FILE [disabled] + -C, --config-cache alias for \`--cache-file=config.cache' + -n, --no-create do not create output files + --srcdir=DIR find the sources in DIR [configure dir or \`..'] + +Installation directories: + --prefix=PREFIX install architecture-independent files in PREFIX + [$ac_default_prefix] + --exec-prefix=EPREFIX install architecture-dependent files in EPREFIX + [PREFIX] + +By default, \`make install' will install all the files in +\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify +an installation prefix other than \`$ac_default_prefix' using \`--prefix', +for instance \`--prefix=\$HOME'. + +For better control, use the options below. + +Fine tuning of the installation directories: + --bindir=DIR user executables [EPREFIX/bin] + --sbindir=DIR system admin executables [EPREFIX/sbin] + --libexecdir=DIR program executables [EPREFIX/libexec] + --sysconfdir=DIR read-only single-machine data [PREFIX/etc] + --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com] + --localstatedir=DIR modifiable single-machine data [PREFIX/var] + --libdir=DIR object code libraries [EPREFIX/lib] + --includedir=DIR C header files [PREFIX/include] + --oldincludedir=DIR C header files for non-gcc [/usr/include] + --datarootdir=DIR read-only arch.-independent data root [PREFIX/share] + --datadir=DIR read-only architecture-independent data [DATAROOTDIR] + --infodir=DIR info documentation [DATAROOTDIR/info] + --localedir=DIR locale-dependent data [DATAROOTDIR/locale] + --mandir=DIR man documentation [DATAROOTDIR/man] + --docdir=DIR documentation root [DATAROOTDIR/doc/issm] + --htmldir=DIR html documentation [DOCDIR] + --dvidir=DIR dvi documentation [DOCDIR] + --pdfdir=DIR pdf documentation [DOCDIR] + --psdir=DIR ps documentation [DOCDIR] +_ACEOF + + cat <<\_ACEOF + +Program names: + --program-prefix=PREFIX prepend PREFIX to installed program names + --program-suffix=SUFFIX append SUFFIX to installed program names + --program-transform-name=PROGRAM run sed PROGRAM on installed program names + +X features: + --x-includes=DIR X include files are in DIR + --x-libraries=DIR X library files are in DIR + +System types: + --build=BUILD configure for building on BUILD [guessed] + --host=HOST cross-compile to build programs to run on HOST [BUILD] + --target=TARGET configure for building compilers for TARGET [HOST] +_ACEOF +fi + +if test -n "$ac_init_help"; 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We prefer a C program (faster), +# so one script is as good as another. But avoid the broken or +# incompatible versions: +# SysV /etc/install, /usr/sbin/install +# SunOS /usr/etc/install +# IRIX /sbin/install +# AIX /bin/install +# AmigaOS /C/install, which installs bootblocks on floppy discs +# AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag +# AFS /usr/afsws/bin/install, which mishandles nonexistent args +# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff" +# OS/2's system install, which has a completely different semantic +# ./install, which can be erroneously created by make from ./install.sh. +# Reject install programs that cannot install multiple files. +{ $as_echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5 +$as_echo_n "checking for a BSD-compatible install... " >&6; } +if test -z "$INSTALL"; then +if test "${ac_cv_path_install+set}" = set; then + $as_echo_n "(cached) " >&6 +else + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + # Account for people who put trailing slashes in PATH elements. +case $as_dir/ in + ./ | .// | /cC/* | \ + /etc/* | /usr/sbin/* | /usr/etc/* | /sbin/* | /usr/afsws/bin/* | \ + ?:\\/os2\\/install\\/* | ?:\\/OS2\\/INSTALL\\/* | \ + /usr/ucb/* ) ;; + *) + # OSF1 and SCO ODT 3.0 have their own names for install. + # Don't use installbsd from OSF since it installs stuff as root + # by default. + for ac_prog in ginstall scoinst install; do + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; }; then + if test $ac_prog = install && + grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then + # AIX install. It has an incompatible calling convention. + : + elif test $ac_prog = install && + grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then + # program-specific install script used by HP pwplus--don't use. + : + else + rm -rf conftest.one conftest.two conftest.dir + echo one > conftest.one + echo two > conftest.two + mkdir conftest.dir + if "$as_dir/$ac_prog$ac_exec_ext" -c conftest.one conftest.two "`pwd`/conftest.dir" && + test -s conftest.one && test -s conftest.two && + test -s conftest.dir/conftest.one && + test -s conftest.dir/conftest.two + then + ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c" + break 3 + fi + fi + fi + done + done + ;; +esac + +done +IFS=$as_save_IFS + +rm -rf conftest.one conftest.two conftest.dir + +fi + if test "${ac_cv_path_install+set}" = set; then + INSTALL=$ac_cv_path_install + else + # As a last resort, use the slow shell script. Don't cache a + # value for INSTALL within a source directory, because that will + # break other packages using the cache if that directory is + # removed, or if the value is a relative name. + INSTALL=$ac_install_sh + fi +fi +{ $as_echo "$as_me:$LINENO: result: $INSTALL" >&5 +$as_echo "$INSTALL" >&6; } + +# Use test -z because SunOS4 sh mishandles braces in ${var-val}. +# It thinks the first close brace ends the variable substitution. +test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}' + +test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL}' + +test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644' + +{ $as_echo "$as_me:$LINENO: checking whether build environment is sane" >&5 +$as_echo_n "checking whether build environment is sane... " >&6; } +# Just in case +sleep 1 +echo timestamp > conftest.file +# Do `set' in a subshell so we don't clobber the current shell's +# arguments. Must try -L first in case configure is actually a +# symlink; some systems play weird games with the mod time of symlinks +# (eg FreeBSD returns the mod time of the symlink's containing +# directory). +if ( + set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null` + if test "$*" = "X"; then + # -L didn't work. + set X `ls -t $srcdir/configure conftest.file` + fi + rm -f conftest.file + if test "$*" != "X $srcdir/configure conftest.file" \ + && test "$*" != "X conftest.file $srcdir/configure"; then + + # If neither matched, then we have a broken ls. This can happen + # if, for instance, CONFIG_SHELL is bash and it inherits a + # broken ls alias from the environment. This has actually + # happened. Such a system could not be considered "sane". + { { $as_echo "$as_me:$LINENO: error: ls -t appears to fail. Make sure there is not a broken +alias in your environment" >&5 +$as_echo "$as_me: error: ls -t appears to fail. Make sure there is not a broken +alias in your environment" >&2;} + { (exit 1); exit 1; }; } + fi + + test "$2" = conftest.file + ) +then + # Ok. + : +else + { { $as_echo "$as_me:$LINENO: error: newly created file is older than distributed files! +Check your system clock" >&5 +$as_echo "$as_me: error: newly created file is older than distributed files! +Check your system clock" >&2;} + { (exit 1); exit 1; }; } +fi +{ $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } +test "$program_prefix" != NONE && + program_transform_name="s&^&$program_prefix&;$program_transform_name" +# Use a double $ so make ignores it. +test "$program_suffix" != NONE && + program_transform_name="s&\$&$program_suffix&;$program_transform_name" +# Double any \ or $. +# By default was `s,x,x', remove it if useless. +ac_script='s/[\\$]/&&/g;s/;s,x,x,$//' +program_transform_name=`$as_echo "$program_transform_name" | sed "$ac_script"` + +# expand $ac_aux_dir to an absolute path +am_aux_dir=`cd $ac_aux_dir && pwd` + +test x"${MISSING+set}" = xset || MISSING="\${SHELL} $am_aux_dir/missing" +# Use eval to expand $SHELL +if eval "$MISSING --run true"; then + am_missing_run="$MISSING --run " +else + am_missing_run= + { $as_echo "$as_me:$LINENO: WARNING: \`missing' script is too old or missing" >&5 +$as_echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;} +fi + +{ $as_echo "$as_me:$LINENO: checking for a thread-safe mkdir -p" >&5 +$as_echo_n "checking for a thread-safe mkdir -p... " >&6; } +if test -z "$MKDIR_P"; then + if test "${ac_cv_path_mkdir+set}" = set; then + $as_echo_n "(cached) " >&6 +else + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH$PATH_SEPARATOR/opt/sfw/bin +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_prog in mkdir gmkdir; do + for ac_exec_ext in '' $ac_executable_extensions; do + { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue + case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #( + 'mkdir (GNU coreutils) '* | \ + 'mkdir (coreutils) '* | \ + 'mkdir (fileutils) '4.1*) + ac_cv_path_mkdir=$as_dir/$ac_prog$ac_exec_ext + break 3;; + esac + done + done +done +IFS=$as_save_IFS + +fi + + if test "${ac_cv_path_mkdir+set}" = set; then + MKDIR_P="$ac_cv_path_mkdir -p" + else + # As a last resort, use the slow shell script. Don't cache a + # value for MKDIR_P within a source directory, because that will + # break other packages using the cache if that directory is + # removed, or if the value is a relative name. + test -d ./--version && rmdir ./--version + MKDIR_P="$ac_install_sh -d" + fi +fi +{ $as_echo "$as_me:$LINENO: result: $MKDIR_P" >&5 +$as_echo "$MKDIR_P" >&6; } + +mkdir_p="$MKDIR_P" +case $mkdir_p in + [\\/$]* | ?:[\\/]*) ;; + */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;; +esac + +for ac_prog in gawk mawk nawk awk +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_AWK+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$AWK"; then + ac_cv_prog_AWK="$AWK" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_AWK="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +AWK=$ac_cv_prog_AWK +if test -n "$AWK"; then + { $as_echo "$as_me:$LINENO: result: $AWK" >&5 +$as_echo "$AWK" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$AWK" && break +done + +{ $as_echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5 +$as_echo_n "checking whether ${MAKE-make} sets \$(MAKE)... " >&6; } +set x ${MAKE-make} +ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'` +if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.make <<\_ACEOF +SHELL = /bin/sh +all: + @echo '@@@%%%=$(MAKE)=@@@%%%' +_ACEOF +# GNU make sometimes prints "make[1]: Entering...", which would confuse us. +case `${MAKE-make} -f conftest.make 2>/dev/null` in + *@@@%%%=?*=@@@%%%*) + eval ac_cv_prog_make_${ac_make}_set=yes;; + *) + eval ac_cv_prog_make_${ac_make}_set=no;; +esac +rm -f conftest.make +fi +if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + SET_MAKE= +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + SET_MAKE="MAKE=${MAKE-make}" +fi + +rm -rf .tst 2>/dev/null +mkdir .tst 2>/dev/null +if test -d .tst; then + am__leading_dot=. +else + am__leading_dot=_ +fi +rmdir .tst 2>/dev/null + +if test "`cd $srcdir && pwd`" != "`pwd`"; then + # Use -I$(srcdir) only when $(srcdir) != ., so that make's output + # is not polluted with repeated "-I." + am__isrc=' -I$(srcdir)' + # test to see if srcdir already configured + if test -f $srcdir/config.status; then + { { $as_echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5 +$as_echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;} + { (exit 1); exit 1; }; } + fi +fi + +# test whether we have cygpath +if test -z "$CYGPATH_W"; then + if (cygpath --version) >/dev/null 2>/dev/null; then + CYGPATH_W='cygpath -w' + else + CYGPATH_W=echo + fi +fi + + +# Define the identity of the package. + PACKAGE='issm' + VERSION='1.0' + + +cat >>confdefs.h <<_ACEOF +#define PACKAGE "$PACKAGE" +_ACEOF + + +cat >>confdefs.h <<_ACEOF +#define VERSION "$VERSION" +_ACEOF + +# Some tools Automake needs. + +ACLOCAL=${ACLOCAL-"${am_missing_run}aclocal-${am__api_version}"} + + +AUTOCONF=${AUTOCONF-"${am_missing_run}autoconf"} + + +AUTOMAKE=${AUTOMAKE-"${am_missing_run}automake-${am__api_version}"} + + +AUTOHEADER=${AUTOHEADER-"${am_missing_run}autoheader"} + + +MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"} + +install_sh=${install_sh-"\$(SHELL) $am_aux_dir/install-sh"} + +# Installed binaries are usually stripped using `strip' when the user +# run `make install-strip'. However `strip' might not be the right +# tool to use in cross-compilation environments, therefore Automake +# will honor the `STRIP' environment variable to overrule this program. +if test "$cross_compiling" != no; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. +set dummy ${ac_tool_prefix}strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$STRIP"; then + ac_cv_prog_STRIP="$STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_STRIP="${ac_tool_prefix}strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +STRIP=$ac_cv_prog_STRIP +if test -n "$STRIP"; then + { $as_echo "$as_me:$LINENO: result: $STRIP" >&5 +$as_echo "$STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_STRIP"; then + ac_ct_STRIP=$STRIP + # Extract the first word of "strip", so it can be a program name with args. +set dummy strip; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_STRIP"; then + ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_STRIP="strip" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP +if test -n "$ac_ct_STRIP"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5 +$as_echo "$ac_ct_STRIP" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_STRIP" = x; then + STRIP=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + STRIP=$ac_ct_STRIP + fi +else + STRIP="$ac_cv_prog_STRIP" +fi + +fi +INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s" + +# We need awk for the "check" target. The system "awk" is bad on +# some platforms. +# Always define AMTAR for backward compatibility. + +AMTAR=${AMTAR-"${am_missing_run}tar"} + +am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -' + + + + + +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. +set dummy ${ac_tool_prefix}ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$RANLIB"; then + ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +RANLIB=$ac_cv_prog_RANLIB +if test -n "$RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $RANLIB" >&5 +$as_echo "$RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_RANLIB"; then + ac_ct_RANLIB=$RANLIB + # Extract the first word of "ranlib", so it can be a program name with args. +set dummy ranlib; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_RANLIB"; then + ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_RANLIB="ranlib" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB +if test -n "$ac_ct_RANLIB"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5 +$as_echo "$ac_ct_RANLIB" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_RANLIB" = x; then + RANLIB=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + RANLIB=$ac_ct_RANLIB + fi +else + RANLIB="$ac_cv_prog_RANLIB" +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args. +set dummy ${ac_tool_prefix}gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CC"; then + ac_ct_CC=$CC + # Extract the first word of "gcc", so it can be a program name with args. +set dummy gcc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="gcc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +else + CC="$ac_cv_prog_CC" +fi + +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args. +set dummy ${ac_tool_prefix}cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="${ac_tool_prefix}cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + fi +fi +if test -z "$CC"; then + # Extract the first word of "cc", so it can be a program name with args. +set dummy cc; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else + ac_prog_rejected=no +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then + ac_prog_rejected=yes + continue + fi + ac_cv_prog_CC="cc" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +if test $ac_prog_rejected = yes; then + # We found a bogon in the path, so make sure we never use it. + set dummy $ac_cv_prog_CC + shift + if test $# != 0; then + # We chose a different compiler from the bogus one. + # However, it has the same basename, so the bogon will be chosen + # first if we set CC to just the basename; use the full file name. + shift + ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@" + fi +fi +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + +fi +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + for ac_prog in cl.exe + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_CC="$ac_tool_prefix$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { $as_echo "$as_me:$LINENO: result: $CC" >&5 +$as_echo "$CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$CC" && break + done +fi +if test -z "$CC"; then + ac_ct_CC=$CC + for ac_prog in cl.exe +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5 +$as_echo_n "checking for $ac_word... " >&6; } +if test "${ac_cv_prog_ac_ct_CC+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_CC="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5 +$as_echo "$ac_ct_CC" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$ac_ct_CC" && break +done + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +fi + +fi + + +test -z "$CC" && { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: no acceptable C compiler found in \$PATH +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } + +# Provide some information about the compiler. +$as_echo "$as_me:$LINENO: checking for C compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +{ (ac_try="$ac_compiler --version >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler --version >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -v >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -v >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -V >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -V >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } + +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +ac_clean_files_save=$ac_clean_files +ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out" +# Try to create an executable without -o first, disregard a.out. +# It will help us diagnose broken compilers, and finding out an intuition +# of exeext. +{ $as_echo "$as_me:$LINENO: checking for C compiler default output file name" >&5 +$as_echo_n "checking for C compiler default output file name... " >&6; } +ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'` + +# The possible output files: +ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*" + +ac_rmfiles= +for ac_file in $ac_files +do + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; + * ) ac_rmfiles="$ac_rmfiles $ac_file";; + esac +done +rm -f $ac_rmfiles + +if { (ac_try="$ac_link_default" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link_default") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + # Autoconf-2.13 could set the ac_cv_exeext variable to `no'. +# So ignore a value of `no', otherwise this would lead to `EXEEXT = no' +# in a Makefile. We should not override ac_cv_exeext if it was cached, +# so that the user can short-circuit this test for compilers unknown to +# Autoconf. +for ac_file in $ac_files '' +do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) + ;; + [ab].out ) + # We found the default executable, but exeext='' is most + # certainly right. + break;; + *.* ) + if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no; + then :; else + ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + fi + # We set ac_cv_exeext here because the later test for it is not + # safe: cross compilers may not add the suffix if given an `-o' + # argument, so we may need to know it at that point already. + # Even if this section looks crufty: it has the advantage of + # actually working. + break;; + * ) + break;; + esac +done +test "$ac_cv_exeext" = no && ac_cv_exeext= + +else + ac_file='' +fi + +{ $as_echo "$as_me:$LINENO: result: $ac_file" >&5 +$as_echo "$ac_file" >&6; } +if test -z "$ac_file"; then + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + +{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: C compiler cannot create executables +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: C compiler cannot create executables +See \`config.log' for more details." >&2;} + { (exit 77); exit 77; }; }; } +fi + +ac_exeext=$ac_cv_exeext + +# Check that the compiler produces executables we can run. If not, either +# the compiler is broken, or we cross compile. +{ $as_echo "$as_me:$LINENO: checking whether the C compiler works" >&5 +$as_echo_n "checking whether the C compiler works... " >&6; } +# FIXME: These cross compiler hacks should be removed for Autoconf 3.0 +# If not cross compiling, check that we can run a simple program. +if test "$cross_compiling" != yes; then + if { ac_try='./$ac_file' + { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; }; then + cross_compiling=no + else + if test "$cross_compiling" = maybe; then + cross_compiling=yes + else + { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: cannot run C compiled programs. +If you meant to cross compile, use \`--host'. +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: cannot run C compiled programs. +If you meant to cross compile, use \`--host'. +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } + fi + fi +fi +{ $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + +rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out +ac_clean_files=$ac_clean_files_save +# Check that the compiler produces executables we can run. If not, either +# the compiler is broken, or we cross compile. +{ $as_echo "$as_me:$LINENO: checking whether we are cross compiling" >&5 +$as_echo_n "checking whether we are cross compiling... " >&6; } +{ $as_echo "$as_me:$LINENO: result: $cross_compiling" >&5 +$as_echo "$cross_compiling" >&6; } + +{ $as_echo "$as_me:$LINENO: checking for suffix of executables" >&5 +$as_echo_n "checking for suffix of executables... " >&6; } +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + # If both `conftest.exe' and `conftest' are `present' (well, observable) +# catch `conftest.exe'. For instance with Cygwin, `ls conftest' will +# work properly (i.e., refer to `conftest.exe'), while it won't with +# `rm'. +for ac_file in conftest.exe conftest conftest.*; do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; + *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + break;; + * ) break;; + esac +done +else + { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: cannot compute suffix of executables: cannot compile and link +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: cannot compute suffix of executables: cannot compile and link +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } +fi + +rm -f conftest$ac_cv_exeext +{ $as_echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5 +$as_echo "$ac_cv_exeext" >&6; } + +rm -f conftest.$ac_ext +EXEEXT=$ac_cv_exeext +ac_exeext=$EXEEXT +{ $as_echo "$as_me:$LINENO: checking for suffix of object files" >&5 +$as_echo_n "checking for suffix of object files... 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The following induces an error, until -std is added to get + proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an + array size at least. It's necessary to write '\x00'==0 to get something + that's true only with -std. */ +int osf4_cc_array ['\x00' == 0 ? 1 : -1]; + +/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters + inside strings and character constants. */ +#define FOO(x) 'x' +int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1]; + +int test (int i, double x); +struct s1 {int (*f) (int a);}; +struct s2 {int (*f) (double a);}; +int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); +int argc; +char **argv; +int +main () +{ +return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; + ; + return 0; +} +_ACEOF +for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \ + -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__" +do + CC="$ac_save_CC $ac_arg" + rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_cc_c89=$ac_arg +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + +fi + +rm -f core conftest.err conftest.$ac_objext + test "x$ac_cv_prog_cc_c89" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC + +fi +# AC_CACHE_VAL +case "x$ac_cv_prog_cc_c89" in + x) + { $as_echo "$as_me:$LINENO: result: none needed" >&5 +$as_echo "none needed" >&6; } ;; + xno) + { $as_echo "$as_me:$LINENO: result: unsupported" >&5 +$as_echo "unsupported" >&6; } ;; + *) + CC="$CC $ac_cv_prog_cc_c89" + { $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5 +$as_echo "$ac_cv_prog_cc_c89" >&6; } ;; +esac + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +DEPDIR="${am__leading_dot}deps" + +ac_config_commands="$ac_config_commands depfiles" + + +am_make=${MAKE-make} +cat > confinc << 'END' +am__doit: + @echo done +.PHONY: am__doit +END +# If we don't find an include directive, just comment out the code. +{ $as_echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5 +$as_echo_n "checking for style of include used by $am_make... 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" >&6; } +if test "${ac_cv_prog_ac_ct_F77+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test -n "$ac_ct_F77"; then + ac_cv_prog_ac_ct_F77="$ac_ct_F77" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + test -z "$as_dir" && as_dir=. + for ac_exec_ext in '' $ac_executable_extensions; do + if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + ac_cv_prog_ac_ct_F77="$ac_prog" + $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 + break 2 + fi +done +done +IFS=$as_save_IFS + +fi +fi +ac_ct_F77=$ac_cv_prog_ac_ct_F77 +if test -n "$ac_ct_F77"; then + { $as_echo "$as_me:$LINENO: result: $ac_ct_F77" >&5 +$as_echo "$ac_ct_F77" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } +fi + + + test -n "$ac_ct_F77" && break +done + + if test "x$ac_ct_F77" = x; then + F77="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5 +$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + F77=$ac_ct_F77 + fi +fi + + +# Provide some information about the compiler. +$as_echo "$as_me:$LINENO: checking for Fortran 77 compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +{ (ac_try="$ac_compiler --version >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler --version >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -v >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -v >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +{ (ac_try="$ac_compiler -V >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compiler -V >&5") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } +rm -f a.out + +# If we don't use `.F' as extension, the preprocessor is not run on the +# input file. (Note that this only needs to work for GNU compilers.) +ac_save_ext=$ac_ext +ac_ext=F +{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU Fortran 77 compiler" >&5 +$as_echo_n "checking whether we are using the GNU Fortran 77 compiler... " >&6; } +if test "${ac_cv_f77_compiler_gnu+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main +#ifndef __GNUC__ + choke me +#endif + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_compiler_gnu=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_compiler_gnu=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext +ac_cv_f77_compiler_gnu=$ac_compiler_gnu + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_compiler_gnu" >&5 +$as_echo "$ac_cv_f77_compiler_gnu" >&6; } +ac_ext=$ac_save_ext +ac_test_FFLAGS=${FFLAGS+set} +ac_save_FFLAGS=$FFLAGS +FFLAGS= +{ $as_echo "$as_me:$LINENO: checking whether $F77 accepts -g" >&5 +$as_echo_n "checking whether $F77 accepts -g... " >&6; } +if test "${ac_cv_prog_f77_g+set}" = set; then + $as_echo_n "(cached) " >&6 +else + FFLAGS=-g +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_g=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_prog_f77_g=no +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_g" >&5 +$as_echo "$ac_cv_prog_f77_g" >&6; } +if test "$ac_test_FFLAGS" = set; then + FFLAGS=$ac_save_FFLAGS +elif test $ac_cv_prog_f77_g = yes; then + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-g -O2" + else + FFLAGS="-g" + fi +else + if test "x$ac_cv_f77_compiler_gnu" = xyes; then + FFLAGS="-O2" + else + FFLAGS= + fi +fi + +if test $ac_compiler_gnu = yes; then + G77=yes +else + G77= +fi +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +ac_ext=f +ac_compile='$F77 -c $FFLAGS conftest.$ac_ext >&5' +ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_f77_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to get verbose linking output from $F77" >&5 +$as_echo_n "checking how to get verbose linking output from $F77... " >&6; } +if test "${ac_cv_prog_f77_v+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.$ac_objext +if { (ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_compile") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_f77_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext; then + ac_cv_prog_f77_v= +# Try some options frequently used verbose output +for ac_verb in -v -verbose --verbose -V -\#\#\#; do + cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_verb" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + # look for -l* and *.a constructs in the output + for ac_arg in $ac_f77_v_output; do + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a | -[lLRu]*) + ac_cv_prog_f77_v=$ac_verb + break 2 ;; + esac + done +done +if test -z "$ac_cv_prog_f77_v"; then + { $as_echo "$as_me:$LINENO: WARNING: cannot determine how to obtain linking information from $F77" >&5 +$as_echo "$as_me: WARNING: cannot determine how to obtain linking information from $F77" >&2;} +fi +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: WARNING: compilation failed" >&5 +$as_echo "$as_me: WARNING: compilation failed" >&2;} +fi + +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_f77_v" >&5 +$as_echo "$ac_cv_prog_f77_v" >&6; } +{ $as_echo "$as_me:$LINENO: checking for Fortran 77 libraries of $F77" >&5 +$as_echo_n "checking for Fortran 77 libraries of $F77... " >&6; } +if test "${ac_cv_f77_libs+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "x$FLIBS" != "x"; then + ac_cv_f77_libs="$FLIBS" # Let the user override the test. +else + +cat >conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF + +# Compile and link our simple test program by passing a flag (argument +# 1 to this macro) to the Fortran compiler in order to get +# "verbose" output that we can then parse for the Fortran linker +# flags. +ac_save_FFLAGS=$FFLAGS +FFLAGS="$FFLAGS $ac_cv_prog_f77_v" +eval "set x $ac_link" +shift +$as_echo "$as_me:$LINENO: $*" >&5 +# gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, +# LIBRARY_PATH; skip all such settings. +ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | + grep -v 'Driving:' | grep -v "^[_$as_cr_Letters][_$as_cr_alnum]*="` +$as_echo "$ac_f77_v_output" >&5 +FFLAGS=$ac_save_FFLAGS + +rm -rf conftest* + +# On HP/UX there is a line like: "LPATH is: /foo:/bar:/baz" where +# /foo, /bar, and /baz are search directories for the Fortran linker. +# Here, we change these into -L/foo -L/bar -L/baz (and put it first): +ac_f77_v_output="`echo $ac_f77_v_output | + grep 'LPATH is:' | + sed 's|.*LPATH is\(: *[^ ]*\).*|\1|;s|: */| -L/|g'` $ac_f77_v_output" + +# FIXME: we keep getting bitten by quoted arguments; a more general fix +# that detects unbalanced quotes in FLIBS should be implemented +# and (ugh) tested at some point. +case $ac_f77_v_output in + # If we are using xlf then replace all the commas with spaces. + *xlfentry*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/,/ /g'` ;; + + # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted + # $LIBS confuse us, and the libraries appear later in the output anyway). + *mGLOB_options_string*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"-mGLOB[^"]*"/ /g'` ;; + + # Portland Group compiler has singly- or doubly-quoted -cmdline argument + # Singly-quoted arguments were reported for versions 5.2-4 and 6.0-4. + # Doubly-quoted arguments were reported for "PGF90/x86 Linux/x86 5.0-2". + *-cmdline\ * | *-ignore\ * | *-def\ *) + ac_f77_v_output=`echo $ac_f77_v_output | sed "\ + s/-cmdline *'[^']*'/ /g; s/-cmdline *\"[^\"]*\"/ /g + s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g + s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + + # If we are using Cray Fortran then delete quotes. + *cft90*) + ac_f77_v_output=`echo $ac_f77_v_output | sed 's/"//g'` ;; +esac + + + +ac_cv_f77_libs= + +# Save positional arguments (if any) +ac_save_positional="$@" + +set X $ac_f77_v_output +while test $# != 1; do + shift + ac_arg=$1 + case $ac_arg in + [\\/]*.a | ?:[\\/]*.a) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -bI:*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_arg; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi +fi + + ;; + # Ignore these flags. + -lang* | -lcrt*.o | -lc | -lgcc* | -lSystem | -libmil | -LANG:=* | -LIST:* | -LNO:*) + ;; + -lkernel32) + test x"$CYGWIN" != xyes && ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + -[LRuYz]) + # These flags, when seen by themselves, take an argument. + # We remove the space between option and argument and re-iterate + # unless we find an empty arg or a new option (starting with -) + case $2 in + "" | -*);; + *) + ac_arg="$ac_arg$2" + shift; shift + set X $ac_arg "$@" + ;; + esac + ;; + -YP,*) + for ac_j in `$as_echo "$ac_arg" | sed -e 's/-YP,/-L/;s/:/ -L/g'`; do + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_j" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_arg="$ac_arg $ac_j" + ac_cv_f77_libs="$ac_cv_f77_libs $ac_j" +fi + + done + ;; + -[lLR]*) + ac_exists=false + for ac_i in $ac_cv_f77_libs; do + if test x"$ac_arg" = x"$ac_i"; then + ac_exists=true + break + fi + done + + if test x"$ac_exists" = xtrue; then + : +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" +fi + + ;; + -zallextract*| -zdefaultextract) + ac_cv_f77_libs="$ac_cv_f77_libs $ac_arg" + ;; + # Ignore everything else. + esac +done +# restore positional arguments +set X $ac_save_positional; shift + +# We only consider "LD_RUN_PATH" on Solaris systems. If this is seen, +# then we insist that the "run path" must be an absolute path (i.e. it +# must begin with a "/"). +case `(uname -sr) 2>/dev/null` in + "SunOS 5"*) + ac_ld_run_path=`$as_echo "$ac_f77_v_output" | + sed -n 's,^.*LD_RUN_PATH *= *\(/[^ ]*\).*$,-R\1,p'` + test "x$ac_ld_run_path" != x && + if test "$ac_compiler_gnu" = yes; then + for ac_link_opt in $ac_ld_run_path; do + ac_cv_f77_libs="$ac_cv_f77_libs -Xlinker $ac_link_opt" + done +else + ac_cv_f77_libs="$ac_cv_f77_libs $ac_ld_run_path" +fi + ;; +esac +fi # test "x$[]_AC_LANG_PREFIX[]LIBS" = "x" + +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_f77_libs" >&5 +$as_echo "$ac_cv_f77_libs" >&6; } +FLIBS="$ac_cv_f77_libs" + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + +if test "x$CC" != xcc; then + { $as_echo "$as_me:$LINENO: checking whether $CC and cc understand -c and -o together" >&5 +$as_echo_n "checking whether $CC and cc understand -c and -o together... " >&6; } +else + { $as_echo "$as_me:$LINENO: checking whether cc understands -c and -o together" >&5 +$as_echo_n "checking whether cc understands -c and -o together... " >&6; } +fi +set dummy $CC; ac_cc=`$as_echo "$2" | + sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +if { as_var=ac_cv_prog_cc_${ac_cc}_c_o; eval "test \"\${$as_var+set}\" = set"; }; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +# Make sure it works both with $CC and with simple cc. +# We do the test twice because some compilers refuse to overwrite an +# existing .o file with -o, though they will create one. +ac_try='$CC -c conftest.$ac_ext -o conftest2.$ac_objext >&5' +rm -f conftest2.* +if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; +then + eval ac_cv_prog_cc_${ac_cc}_c_o=yes + if test "x$CC" != xcc; then + # Test first that cc exists at all. + if { ac_try='cc -c conftest.$ac_ext >&5' + { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; }; then + ac_try='cc -c conftest.$ac_ext -o conftest2.$ac_objext >&5' + rm -f conftest2.* + if { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && + test -f conftest2.$ac_objext && { (case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; + then + # cc works too. + : + else + # cc exists but doesn't like -o. + eval ac_cv_prog_cc_${ac_cc}_c_o=no + fi + fi + fi +else + eval ac_cv_prog_cc_${ac_cc}_c_o=no +fi +rm -f core conftest* + +fi +if eval test \$ac_cv_prog_cc_${ac_cc}_c_o = yes; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } +else + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + +cat >>confdefs.h <<\_ACEOF +#define NO_MINUS_C_MINUS_O 1 +_ACEOF + +fi + +# FIXME: we rely on the cache variable name because +# there is no other way. +set dummy $CC +am_cc=`echo $2 | sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +eval am_t=\$ac_cv_prog_cc_${am_cc}_c_o +if test "$am_t" != yes; then + # Losing compiler, so override with the script. + # FIXME: It is wrong to rewrite CC. + # But if we don't then we get into trouble of one sort or another. + # A longer-term fix would be to have automake use am__CC in this case, + # and then we could set am__CC="\$(top_srcdir)/compile \$(CC)" + CC="$am_aux_dir/compile $CC" +fi + + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +{ $as_echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5 +$as_echo_n "checking how to run the C preprocessor... " >&6; } +# On Suns, sometimes $CPP names a directory. +if test -n "$CPP" && test -d "$CPP"; then + CPP= +fi +if test -z "$CPP"; then + if test "${ac_cv_prog_CPP+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # Double quotes because CPP needs to be expanded + for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp" + do + ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +#ifdef __STDC__ +# include +#else +# include +#endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +#include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + break +fi + + done + ac_cv_prog_CPP=$CPP + +fi + CPP=$ac_cv_prog_CPP +else + ac_cv_prog_CPP=$CPP +fi +{ $as_echo "$as_me:$LINENO: result: $CPP" >&5 +$as_echo "$CPP" >&6; } +ac_preproc_ok=false +for ac_c_preproc_warn_flag in '' yes +do + # Use a header file that comes with gcc, so configuring glibc + # with a fresh cross-compiler works. + # Prefer to if __STDC__ is defined, since + # exists even on freestanding compilers. + # On the NeXT, cc -E runs the code through the compiler's parser, + # not just through cpp. "Syntax error" is here to catch this case. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +#ifdef __STDC__ +# include +#else +# include +#endif + Syntax error +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Broken: fails on valid input. +continue +fi + +rm -f conftest.err conftest.$ac_ext + + # OK, works on sane cases. Now check whether nonexistent headers + # can be detected and how. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +#include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # Broken: success on invalid input. +continue +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + # Passes both tests. +ac_preproc_ok=: +break +fi + +rm -f conftest.err conftest.$ac_ext + +done +# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. +rm -f conftest.err conftest.$ac_ext +if $ac_preproc_ok; then + : +else + { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +{ { $as_echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&5 +$as_echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check +See \`config.log' for more details." >&2;} + { (exit 1); exit 1; }; }; } +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +{ $as_echo "$as_me:$LINENO: checking for X" >&5 +$as_echo_n "checking for X... " >&6; } + + +# Check whether --with-x was given. +if test "${with_x+set}" = set; then + withval=$with_x; +fi + +# $have_x is `yes', `no', `disabled', or empty when we do not yet know. +if test "x$with_x" = xno; then + # The user explicitly disabled X. + have_x=disabled +else + case $x_includes,$x_libraries in #( + *\'*) { { $as_echo "$as_me:$LINENO: error: cannot use X directory names containing '" >&5 +$as_echo "$as_me: error: cannot use X directory names containing '" >&2;} + { (exit 1); exit 1; }; };; #( + *,NONE | NONE,*) if test "${ac_cv_have_x+set}" = set; then + $as_echo_n "(cached) " >&6 +else + # One or both of the vars are not set, and there is no cached value. +ac_x_includes=no ac_x_libraries=no +rm -f -r conftest.dir +if mkdir conftest.dir; then + cd conftest.dir + cat >Imakefile <<'_ACEOF' +incroot: + @echo incroot='${INCROOT}' +usrlibdir: + @echo usrlibdir='${USRLIBDIR}' +libdir: + @echo libdir='${LIBDIR}' +_ACEOF + if (export CC; ${XMKMF-xmkmf}) >/dev/null 2>/dev/null && test -f Makefile; then + # GNU make sometimes prints "make[1]: Entering...", which would confuse us. + for ac_var in incroot usrlibdir libdir; do + eval "ac_im_$ac_var=\`\${MAKE-make} $ac_var 2>/dev/null | sed -n 's/^$ac_var=//p'\`" + done + # Open Windows xmkmf reportedly sets LIBDIR instead of USRLIBDIR. + for ac_extension in a so sl dylib la dll; do + if test ! -f "$ac_im_usrlibdir/libX11.$ac_extension" && + test -f "$ac_im_libdir/libX11.$ac_extension"; then + ac_im_usrlibdir=$ac_im_libdir; break + fi + done + # Screen out bogus values from the imake configuration. They are + # bogus both because they are the default anyway, and because + # using them would break gcc on systems where it needs fixed includes. + case $ac_im_incroot in + /usr/include) ac_x_includes= ;; + *) test -f "$ac_im_incroot/X11/Xos.h" && ac_x_includes=$ac_im_incroot;; + esac + case $ac_im_usrlibdir in + /usr/lib | /usr/lib64 | /lib | /lib64) ;; + *) test -d "$ac_im_usrlibdir" && ac_x_libraries=$ac_im_usrlibdir ;; + esac + fi + cd .. + rm -f -r conftest.dir +fi + +# Standard set of common directories for X headers. +# Check X11 before X11Rn because it is often a symlink to the current release. +ac_x_header_dirs=' +/usr/X11/include +/usr/X11R6/include +/usr/X11R5/include +/usr/X11R4/include + +/usr/include/X11 +/usr/include/X11R6 +/usr/include/X11R5 +/usr/include/X11R4 + +/usr/local/X11/include +/usr/local/X11R6/include +/usr/local/X11R5/include +/usr/local/X11R4/include + +/usr/local/include/X11 +/usr/local/include/X11R6 +/usr/local/include/X11R5 +/usr/local/include/X11R4 + +/usr/X386/include +/usr/x386/include +/usr/XFree86/include/X11 + +/usr/include +/usr/local/include +/usr/unsupported/include +/usr/athena/include +/usr/local/x11r5/include +/usr/lpp/Xamples/include + +/usr/openwin/include +/usr/openwin/share/include' + +if test "$ac_x_includes" = no; then + # Guess where to find include files, by looking for Xlib.h. + # First, try using that file with no special directory specified. + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +#include +_ACEOF +if { (ac_try="$ac_cpp conftest.$ac_ext" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } >/dev/null && { + test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test ! -s conftest.err + }; then + # We can compile using X headers with no special include directory. +ac_x_includes= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + for ac_dir in $ac_x_header_dirs; do + if test -r "$ac_dir/X11/Xlib.h"; then + ac_x_includes=$ac_dir + break + fi +done +fi + +rm -f conftest.err conftest.$ac_ext +fi # $ac_x_includes = no + +if test "$ac_x_libraries" = no; then + # Check for the libraries. + # See if we find them without any special options. + # Don't add to $LIBS permanently. + ac_save_LIBS=$LIBS + LIBS="-lX11 $LIBS" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +#include +int +main () +{ +XrmInitialize () + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + LIBS=$ac_save_LIBS +# We can link X programs with no special library path. +ac_x_libraries= +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS=$ac_save_LIBS +for ac_dir in `$as_echo "$ac_x_includes $ac_x_header_dirs" | sed s/include/lib/g` +do + # Don't even attempt the hair of trying to link an X program! + for ac_extension in a so sl dylib la dll; do + if test -r "$ac_dir/libX11.$ac_extension"; then + ac_x_libraries=$ac_dir + break 2 + fi + done +done +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi # $ac_x_libraries = no + +case $ac_x_includes,$ac_x_libraries in #( + no,* | *,no | *\'*) + # Didn't find X, or a directory has "'" in its name. + ac_cv_have_x="have_x=no";; #( + *) + # Record where we found X for the cache. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$ac_x_includes'\ + ac_x_libraries='$ac_x_libraries'" +esac +fi +;; #( + *) have_x=yes;; + esac + eval "$ac_cv_have_x" +fi # $with_x != no + +if test "$have_x" != yes; then + { $as_echo "$as_me:$LINENO: result: $have_x" >&5 +$as_echo "$have_x" >&6; } + no_x=yes +else + # If each of the values was on the command line, it overrides each guess. + test "x$x_includes" = xNONE && x_includes=$ac_x_includes + test "x$x_libraries" = xNONE && x_libraries=$ac_x_libraries + # Update the cache value to reflect the command line values. + ac_cv_have_x="have_x=yes\ + ac_x_includes='$x_includes'\ + ac_x_libraries='$x_libraries'" + { $as_echo "$as_me:$LINENO: result: libraries $x_libraries, headers $x_includes" >&5 +$as_echo "libraries $x_libraries, headers $x_includes" >&6; } +fi + +if test "$no_x" = yes; then + # Not all programs may use this symbol, but it does not hurt to define it. + +cat >>confdefs.h <<\_ACEOF +#define X_DISPLAY_MISSING 1 +_ACEOF + + X_CFLAGS= X_PRE_LIBS= X_LIBS= X_EXTRA_LIBS= +else + if test -n "$x_includes"; then + X_CFLAGS="$X_CFLAGS -I$x_includes" + fi + + # It would also be nice to do this for all -L options, not just this one. + if test -n "$x_libraries"; then + X_LIBS="$X_LIBS -L$x_libraries" + # For Solaris; some versions of Sun CC require a space after -R and + # others require no space. Words are not sufficient . . . . + { $as_echo "$as_me:$LINENO: checking whether -R must be followed by a space" >&5 +$as_echo_n "checking whether -R must be followed by a space... " >&6; } + ac_xsave_LIBS=$LIBS; LIBS="$LIBS -R$x_libraries" + ac_xsave_c_werror_flag=$ac_c_werror_flag + ac_c_werror_flag=yes + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: no" >&5 +$as_echo "no" >&6; } + X_LIBS="$X_LIBS -R$x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + LIBS="$ac_xsave_LIBS -R $x_libraries" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + { $as_echo "$as_me:$LINENO: result: yes" >&5 +$as_echo "yes" >&6; } + X_LIBS="$X_LIBS -R $x_libraries" +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: result: neither works" >&5 +$as_echo "neither works" >&6; } +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + ac_c_werror_flag=$ac_xsave_c_werror_flag + LIBS=$ac_xsave_LIBS + fi + + # Check for system-dependent libraries X programs must link with. + # Do this before checking for the system-independent R6 libraries + # (-lICE), since we may need -lsocket or whatever for X linking. + + if test "$ISC" = yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl_s -linet" + else + # Martyn Johnson says this is needed for Ultrix, if the X + # libraries were built with DECnet support. And Karl Berry says + # the Alpha needs dnet_stub (dnet does not exist). + ac_xsave_LIBS="$LIBS"; LIBS="$LIBS $X_LIBS -lX11" + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char XOpenDisplay (); +int +main () +{ +return XOpenDisplay (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + : +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet... " >&6; } +if test "${ac_cv_lib_dnet_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet" +fi + + if test $ac_cv_lib_dnet_dnet_ntoa = no; then + { $as_echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet_stub" >&5 +$as_echo_n "checking for dnet_ntoa in -ldnet_stub... " >&6; } +if test "${ac_cv_lib_dnet_stub_dnet_ntoa+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-ldnet_stub $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char dnet_ntoa (); +int +main () +{ +return dnet_ntoa (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_dnet_stub_dnet_ntoa=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_dnet_stub_dnet_ntoa=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5 +$as_echo "$ac_cv_lib_dnet_stub_dnet_ntoa" >&6; } +if test "x$ac_cv_lib_dnet_stub_dnet_ntoa" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet_stub" +fi + + fi +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext + LIBS="$ac_xsave_LIBS" + + # msh@cis.ufl.edu says -lnsl (and -lsocket) are needed for his 386/AT, + # to get the SysV transport functions. + # Chad R. Larson says the Pyramis MIS-ES running DC/OSx (SVR4) + # needs -lnsl. + # The nsl library prevents programs from opening the X display + # on Irix 5.2, according to T.E. Dickey. + # The functions gethostbyname, getservbyname, and inet_addr are + # in -lbsd on LynxOS 3.0.1/i386, according to Lars Hecking. + { $as_echo "$as_me:$LINENO: checking for gethostbyname" >&5 +$as_echo_n "checking for gethostbyname... " >&6; } +if test "${ac_cv_func_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define gethostbyname to an innocuous variant, in case declares gethostbyname. + For example, HP-UX 11i declares gettimeofday. */ +#define gethostbyname innocuous_gethostbyname + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char gethostbyname (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef gethostbyname + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_gethostbyname || defined __stub___gethostbyname +choke me +#endif + +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_gethostbyname" >&5 +$as_echo "$ac_cv_func_gethostbyname" >&6; } + + if test $ac_cv_func_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5 +$as_echo_n "checking for gethostbyname in -lnsl... " >&6; } +if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lnsl $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_nsl_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_nsl_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5 +$as_echo "$ac_cv_lib_nsl_gethostbyname" >&6; } +if test "x$ac_cv_lib_nsl_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl" +fi + + if test $ac_cv_lib_nsl_gethostbyname = no; then + { $as_echo "$as_me:$LINENO: checking for gethostbyname in -lbsd" >&5 +$as_echo_n "checking for gethostbyname in -lbsd... " >&6; } +if test "${ac_cv_lib_bsd_gethostbyname+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lbsd $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char gethostbyname (); +int +main () +{ +return gethostbyname (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_bsd_gethostbyname=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_bsd_gethostbyname=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_bsd_gethostbyname" >&5 +$as_echo "$ac_cv_lib_bsd_gethostbyname" >&6; } +if test "x$ac_cv_lib_bsd_gethostbyname" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lbsd" +fi + + fi + fi + + # lieder@skyler.mavd.honeywell.com says without -lsocket, + # socket/setsockopt and other routines are undefined under SCO ODT + # 2.0. But -lsocket is broken on IRIX 5.2 (and is not necessary + # on later versions), says Simon Leinen: it contains gethostby* + # variants that don't use the name server (or something). -lsocket + # must be given before -lnsl if both are needed. We assume that + # if connect needs -lnsl, so does gethostbyname. + { $as_echo "$as_me:$LINENO: checking for connect" >&5 +$as_echo_n "checking for connect... " >&6; } +if test "${ac_cv_func_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define connect to an innocuous variant, in case declares connect. + For example, HP-UX 11i declares gettimeofday. */ +#define connect innocuous_connect + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char connect (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef connect + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_connect || defined __stub___connect +choke me +#endif + +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_connect" >&5 +$as_echo "$ac_cv_func_connect" >&6; } + + if test $ac_cv_func_connect = no; then + { $as_echo "$as_me:$LINENO: checking for connect in -lsocket" >&5 +$as_echo_n "checking for connect in -lsocket... " >&6; } +if test "${ac_cv_lib_socket_connect+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lsocket $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char connect (); +int +main () +{ +return connect (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_socket_connect=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_socket_connect=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5 +$as_echo "$ac_cv_lib_socket_connect" >&6; } +if test "x$ac_cv_lib_socket_connect" = x""yes; then + X_EXTRA_LIBS="-lsocket $X_EXTRA_LIBS" +fi + + fi + + # Guillermo Gomez says -lposix is necessary on A/UX. + { $as_echo "$as_me:$LINENO: checking for remove" >&5 +$as_echo_n "checking for remove... " >&6; } +if test "${ac_cv_func_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define remove to an innocuous variant, in case declares remove. + For example, HP-UX 11i declares gettimeofday. */ +#define remove innocuous_remove + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char remove (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef remove + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_remove || defined __stub___remove +choke me +#endif + +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_remove" >&5 +$as_echo "$ac_cv_func_remove" >&6; } + + if test $ac_cv_func_remove = no; then + { $as_echo "$as_me:$LINENO: checking for remove in -lposix" >&5 +$as_echo_n "checking for remove in -lposix... " >&6; } +if test "${ac_cv_lib_posix_remove+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lposix $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char remove (); +int +main () +{ +return remove (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_posix_remove=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_posix_remove=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_posix_remove" >&5 +$as_echo "$ac_cv_lib_posix_remove" >&6; } +if test "x$ac_cv_lib_posix_remove" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lposix" +fi + + fi + + # BSDI BSD/OS 2.1 needs -lipc for XOpenDisplay. + { $as_echo "$as_me:$LINENO: checking for shmat" >&5 +$as_echo_n "checking for shmat... " >&6; } +if test "${ac_cv_func_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ +/* Define shmat to an innocuous variant, in case declares shmat. + For example, HP-UX 11i declares gettimeofday. */ +#define shmat innocuous_shmat + +/* System header to define __stub macros and hopefully few prototypes, + which can conflict with char shmat (); below. + Prefer to if __STDC__ is defined, since + exists even on freestanding compilers. */ + +#ifdef __STDC__ +# include +#else +# include +#endif + +#undef shmat + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +/* The GNU C library defines this for functions which it implements + to always fail with ENOSYS. Some functions are actually named + something starting with __ and the normal name is an alias. */ +#if defined __stub_shmat || defined __stub___shmat +choke me +#endif + +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_func_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_func_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_shmat" >&5 +$as_echo "$ac_cv_func_shmat" >&6; } + + if test $ac_cv_func_shmat = no; then + { $as_echo "$as_me:$LINENO: checking for shmat in -lipc" >&5 +$as_echo_n "checking for shmat in -lipc... " >&6; } +if test "${ac_cv_lib_ipc_shmat+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lipc $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char shmat (); +int +main () +{ +return shmat (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ipc_shmat=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ipc_shmat=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ipc_shmat" >&5 +$as_echo "$ac_cv_lib_ipc_shmat" >&6; } +if test "x$ac_cv_lib_ipc_shmat" = x""yes; then + X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc" +fi + + fi + fi + + # Check for libraries that X11R6 Xt/Xaw programs need. + ac_save_LDFLAGS=$LDFLAGS + test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries" + # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to + # check for ICE first), but we must link in the order -lSM -lICE or + # we get undefined symbols. So assume we have SM if we have ICE. + # These have to be linked with before -lX11, unlike the other + # libraries we check for below, so use a different variable. + # John Interrante, Karl Berry + { $as_echo "$as_me:$LINENO: checking for IceConnectionNumber in -lICE" >&5 +$as_echo_n "checking for IceConnectionNumber in -lICE... " >&6; } +if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lICE $X_EXTRA_LIBS $LIBS" +cat >conftest.$ac_ext <<_ACEOF +/* confdefs.h. */ +_ACEOF +cat confdefs.h >>conftest.$ac_ext +cat >>conftest.$ac_ext <<_ACEOF +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char IceConnectionNumber (); +int +main () +{ +return IceConnectionNumber (); + ; + return 0; +} +_ACEOF +rm -f conftest.$ac_objext conftest$ac_exeext +if { (ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\"" +$as_echo "$ac_try_echo") >&5 + (eval "$ac_link") 2>conftest.er1 + ac_status=$? + grep -v '^ *+' conftest.er1 >conftest.err + rm -f conftest.er1 + cat conftest.err >&5 + $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + $as_test_x conftest$ac_exeext + }; then + ac_cv_lib_ICE_IceConnectionNumber=yes +else + $as_echo "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_cv_lib_ICE_IceConnectionNumber=no +fi + +rm -rf conftest.dSYM +rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5 +$as_echo "$ac_cv_lib_ICE_IceConnectionNumber" >&6; } +if test "x$ac_cv_lib_ICE_IceConnectionNumber" = x""yes; then + X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE" +fi + + LDFLAGS=$ac_save_LDFLAGS + +fi + + +ax_enable_matlab= + +# Check whether --with-matlab-dir was given. +if test "${with_matlab_dir+set}" = set; then + withval=$with_matlab_dir; case $withval in + yes | no) + # Explicitly enable or disable Matlab but determine + # Matlab prefix automatically. + ax_enable_matlab=$withval + ;; + *) + # Enable Matlab and use ARG as the Matlab prefix. + # ARG must be an existing directory. + ax_enable_matlab=yes + MATLAB=`cd "${withval-/}" > /dev/null 2>&1 && pwd` + if test -z "$MATLAB" ; then + { { $as_echo "$as_me:$LINENO: error: invalid value '$withval' for --with-matlab" >&5 +$as_echo "$as_me: error: invalid value '$withval' for --with-matlab" >&2;} + { (exit 1); exit 1; }; } + fi + ;; +esac +fi + +if test x$ax_enable_matlab != xno ; then +{ $as_echo "$as_me:$LINENO: checking for Matlab prefix" >&5 +$as_echo_n "checking for Matlab prefix... " >&6; } +if test "${ax_cv_matlab+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "${MATLAB+set}" = set ; then + ax_cv_matlab=`cd "${MATLAB-/}" > /dev/null 2>&1 && pwd` +else + ax_cv_matlab= + IFS=${IFS= } ; ax_ifs=$IFS ; IFS=: + for ax_dir in ${PATH-/opt/bin:/usr/local/bin:/usr/bin:/bin} ; do + if test -z "$ax_dir" ; then + ax_dir=. + fi + if test -x "$ax_dir/matlab" ; then + ax_dir=`echo "$ax_dir" | sed 's,/bin$,,'` + # Directory sanity check. + ax_cv_matlab=`cd "${ax_dir-/}" > /dev/null 2>&1 && pwd` + if test -n "$ax_cv_matlab" ; then + break + fi + fi + done + IFS=$ax_ifs +fi +if test -z "$ax_cv_matlab" ; then + ax_cv_matlab="not found" +fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_cv_matlab" >&5 +$as_echo "$ax_cv_matlab" >&6; } +if test "$ax_cv_matlab" = "not found" ; then + unset MATLAB +else + # Strip trailing dashes. + MATLAB=`echo "$ax_cv_matlab" | sed 's,/*$,,'` +fi +{ $as_echo "$as_me:$LINENO: checking whether to enable Matlab support" >&5 +$as_echo_n "checking whether to enable Matlab support... " >&6; } +if test x$ax_enable_matlab != xno ; then + if test "${MATLAB+set}" = set && test -d "$MATLAB/extern/include" ; then + ax_enable_matlab=yes + elif test x$ax_enable_matlab = x ; then + ax_enable_matlab=no + else + # Fail if Matlab was explicitly enabled. + { $as_echo "$as_me:$LINENO: result: failure" >&5 +$as_echo "failure" >&6; } + { { $as_echo "$as_me:$LINENO: error: check your Matlab setup" >&5 +$as_echo "$as_me: error: check your Matlab setup" >&2;} + { (exit 1); exit 1; }; } + fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_enable_matlab" >&5 +$as_echo "$ax_enable_matlab" >&6; } +if test x$ax_enable_matlab = xyes ; then + +cat >>confdefs.h <<\_ACEOF +#define HAVE_MATLAB 1 +_ACEOF + +fi +fi + + + + # Check whether --enable-debugging was given. +if test "${enable_debugging+set}" = set; then + enableval=$enable_debugging; enable_debugging=$enableval +else + enable_debugging=no +fi + + if test "x$enable_debugging" = xyes; then + +cat >>confdefs.h <<\_ACEOF +#define _DEBUG_ 1 +_ACEOF + + fi + + +# Check whether --with-serial was given. +if test "${with_serial+set}" = set; then + withval=$with_serial; SERIAL_VALUE=$withval +else + SERIAL_VALUE="yes" +fi + + { $as_echo "$as_me:$LINENO: checking for serial compilation" >&5 +$as_echo_n "checking for serial compilation... " >&6; } + if test $SERIAL_VALUE = no; then + NOSERIAL_TRUE= + NOSERIAL_FALSE='#' +else + NOSERIAL_TRUE='#' + NOSERIAL_FALSE= +fi + + { $as_echo "$as_me:$LINENO: result: $SERIAL_VALUE" >&5 +$as_echo "$SERIAL_VALUE" >&6; } + + + +# Check whether --with-parallel was given. +if test "${with_parallel+set}" = set; then + withval=$with_parallel; PARALLEL_VALUE=$withval +else + PARALLEL_VALUE="yes" +fi + + { $as_echo "$as_me:$LINENO: checking for parallel compilation" >&5 +$as_echo_n "checking for parallel compilation... " >&6; } + if test $PARALLEL_VALUE = no; then + NOPARALLEL_TRUE= + NOPARALLEL_FALSE='#' +else + NOPARALLEL_TRUE='#' + NOPARALLEL_FALSE= +fi + + { $as_echo "$as_me:$LINENO: result: $PARALLEL_VALUE" >&5 +$as_echo "$PARALLEL_VALUE" >&6; } + + if test "$SERIAL_VALUE" != "yes" ; then + if test "$PARALLEL_VALUE" != "yes"; then + { { $as_echo "$as_me:$LINENO: error: cannot request --with-serial=no and --with-parallel=no at the same time!" >&5 +$as_echo "$as_me: error: cannot request --with-serial=no and --with-parallel=no at the same time!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + + +# Check whether --with-matlab-dir was given. +if test "${with_matlab_dir+set}" = set; then + withval=$with_matlab_dir; MATLAB_ROOT=$withval +else + MATLAB_ROOT="" +fi + + + if test -d "$MATLAB_ROOT"; then + + { $as_echo "$as_me:$LINENO: checking for Matlab headers and libraries in $MATLAB_ROOT" >&5 +$as_echo_n "checking for Matlab headers and libraries in $MATLAB_ROOT... " >&6; } + + HAVE_MATLAB=yes + MATLABINCL=-I"$MATLAB_ROOT/extern/include"; + MEXEXT=`$MATLAB_ROOT/bin/mexext` + MEXEXT=".$MEXEXT" + MEX=$MATLAB_ROOT/bin/mex + + case "${host_os}" in + *linux*) + if test "${host_cpu}" = "x86_64"; + then + MEXLIB=-L"$MATLAB_ROOT/bin/glnxa64/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnxa64/mexFunction.map"; + else + MEXLIB=-L"$MATLAB_ROOT/bin/glnx86/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnx86/mexFunction.map"; + fi + ;; + esac + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_MATLAB_ 1 +_ACEOF + + + + + + + + { $as_echo "$as_me:$LINENO: result: $HAVE_MATLAB" >&5 +$as_echo "$HAVE_MATLAB" >&6; } + else + HAVE_MATLAB=no + fi + + + if test $HAVE_MATLAB = no; then + if test "$SERIAL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: --with-matlab-dir missing. Matlab is needed to run ISSM serially!" >&5 +$as_echo "$as_me: error: --with-matlab-dir missing. Matlab is needed to run ISSM serially!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + if test $HAVE_MATLAB = yes; then + + + + +{ $as_echo "$as_me:$LINENO: checking for Matlab version" >&5 +$as_echo_n "checking for Matlab version... " >&6; } +if test "${ax_cv_matlab_version+set}" = set; then + $as_echo_n "(cached) " >&6 +else + if test "${MATLAB_VERSION+set}" = set ; then + ax_cv_matlab_version=$MATLAB_VERSION +else + ax_cv_matlab_version= + # Loop over all known architectures. The final dot covers + # Matlab R11 and Matlab V4 for Windows. + for ax_arch in alpha glnxa64 glnx86 hp700 hpux ibm_rs sgi sol2 win32 mac maci . ; do + for ax_exec_name in matlab$EXEEXT MATLAB ; do + ax_matlab_exec=$MATLAB/bin/$ax_arch/${ax_exec_name} + if test -f $ax_matlab_exec ; then + # For Matlab R12, the version number is stored in a + # shared library. + ax_matlab_exec_2=`find $MATLAB/bin/$ax_arch -type f -name libmwservices\* -print 2> /dev/null` + if test -n "$ax_matlab_exec_2" ; then + ax_cv_matlab_version=`strings $ax_matlab_exec_2 2> /dev/null | egrep '^\|build_version_\|[0-9]+\.[0-9]+\.[0-9]+\.[0-9]+' | head -1 | sed 's/^|build_version_|\([0-9]*\.[0-9]*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + # For Matlab R11 and Matlab V4, the version number + # is stored in the executable program. + ax_cv_matlab_version=`strings $ax_matlab_exec 2> /dev/null | egrep '^[0-9]+\.[0-9]+\.[0-9]+\.[0-9]+' | head -1 | sed 's/^\([0-9]*\.[0-9]*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + done + if test -n "$ax_cv_matlab_version" ; then + break + fi + done + if test -z "$ax_cv_matlab_version" ; then + ax_cv_matlab_version="not found" + fi +fi +fi +{ $as_echo "$as_me:$LINENO: result: $ax_cv_matlab_version" >&5 +$as_echo "$ax_cv_matlab_version" >&6; } +case $ax_cv_matlab_version in + [1-9].[0-9] | [1-9][0-9].[0-9]) + MATLAB_VERSION=$ax_cv_matlab_version + MATLAB_MAJOR=`echo $MATLAB_VERSION | sed -e 's/^\([0-9]*\)\.[0-9]*.*/\1/'` + MATLAB_MINOR=`echo $MATLAB_VERSION | sed -e 's/^[0-9]*\.\([0-9]*\).*/\1/'` + ;; + *) + if test x$ax_enable_matlab = xyes ; then + { { $as_echo "$as_me:$LINENO: error: can not determine Matlab version number" >&5 +$as_echo "$as_me: error: can not determine Matlab version number" >&2;} + { (exit 1); exit 1; }; } + fi + MATLAB_VERSION= + MATLAB_MAJOR= + MATLAB_MINOR= + ;; +esac + + + +if test x$MATLAB_VERSION != x ; then + +cat >>confdefs.h <<_ACEOF +#define MATLAB_MAJOR $MATLAB_MAJOR +_ACEOF + + +cat >>confdefs.h <<_ACEOF +#define MATLAB_MINOR $MATLAB_MINOR +_ACEOF + +fi + + + largearrays=no + if test $MATLAB_MAJOR -ge 7; then + if test $MATLAB_MINOR -ge 5; then + if test "${host_cpu}" = "x86_64"; then + largearrays=yes + fi + fi + fi + fi + if test x$largearrays = xyes; then + LARGEARRAYS_TRUE= + LARGEARRAYS_FALSE='#' +else + LARGEARRAYS_TRUE='#' + LARGEARRAYS_FALSE= +fi + + + +# Check whether --with-triangle-dir was given. +if test "${with_triangle_dir+set}" = set; then + withval=$with_triangle_dir; TRIANGLE_ROOT=$withval +else + TRIANGLE_ROOT="" +fi + + { $as_echo "$as_me:$LINENO: checking for Triangle headers and libraries " >&5 +$as_echo_n "checking for Triangle headers and libraries ... " >&6; } + if test -d "$TRIANGLE_ROOT"; then + + + HAVE_TRIANGLE=yes + TRIANGLEINCL=-I$TRIANGLE_ROOT/ + TRIANGLELIB=$TRIANGLE_ROOT/triangle.a + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_TRIANGLE_ 1 +_ACEOF + + + + + else + HAVE_TRIANGLE=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_TRIANGLE" >&5 +$as_echo "$HAVE_TRIANGLE" >&6; } + + { $as_echo "$as_me:$LINENO: checking for triangle and parallel status" >&5 +$as_echo_n "checking for triangle and parallel status... " >&6; } + if test $HAVE_TRIANGLE = no; then + if test "$SERIAL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: --with-triangle-dir missing. Triangle is needed to run ISSM serially!" >&5 +$as_echo "$as_me: error: --with-triangle-dir missing. Triangle is needed to run ISSM serially!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + { $as_echo "$as_me:$LINENO: result: ok" >&5 +$as_echo "ok" >&6; } + + + +# Check whether --with-metis-dir was given. +if test "${with_metis_dir+set}" = set; then + withval=$with_metis_dir; METIS_ROOT=$withval +else + METIS_ROOT="" +fi + + + if test -d "$METIS_ROOT"; then + + { $as_echo "$as_me:$LINENO: checking for Metis headers and libraries in $METIS_ROOT" >&5 +$as_echo_n "checking for Metis headers and libraries in $METIS_ROOT... " >&6; } + + HAVE_METIS=yes + METISINCL=-I"$METIS_ROOT/Lib" + METISLIB=-L"$METIS_ROOT/ -lmetis" + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_METIS_ 1 +_ACEOF + + + + else + HAVE_METIS=no + fi + + if test $HAVE_METIS = no; then + { { $as_echo "$as_me:$LINENO: error: --with-metis-dir missing. Metis is needed to run ISSM" >&5 +$as_echo "$as_me: error: --with-metis-dir missing. Metis is needed to run ISSM" >&2;} + { (exit 1); exit 1; }; }; + else + { $as_echo "$as_me:$LINENO: result: $HAVE_METIS" >&5 +$as_echo "$HAVE_METIS" >&6; } + fi + + { $as_echo "$as_me:$LINENO: checking for mpi..." >&5 +$as_echo_n "checking for mpi...... " >&6; } + +# Check whether --with-mpi-lib was given. +if test "${with_mpi_lib+set}" = set; then + withval=$with_mpi_lib; MPILIB=$withval +else + MPILIB="" +fi + + + +# Check whether --with-mpi-include was given. +if test "${with_mpi_include+set}" = set; then + withval=$with_mpi_include; MPI_INCLUDE=$withval +else + MPI_INCLUDE="" +fi + + + if test -z "$MPILIB" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: empty --with-mpi-lib options! MPI is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: empty --with-mpi-lib options! MPI is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + if test -z "$MPI_INCLUDE" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: empty --with-mpi-include directory! MPI is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: empty --with-mpi-include directory! MPI is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + HAVE_MPI=yes + MPIINCL=-I"$MPI_INCLUDE/" + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_MPI_ 1 +_ACEOF + + + + fi + fi + { $as_echo "$as_me:$LINENO: result: done" >&5 +$as_echo "done" >&6; } + + +# Check whether --with-petsc-dir was given. +if test "${with_petsc_dir+set}" = set; then + withval=$with_petsc_dir; PETSC_ROOT=$withval +else + PETSC_ROOT="" +fi + + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ROOT" = "" ; then + { { $as_echo "$as_me:$LINENO: error: missing --with-petsc-dir argument for parallel compilation!" >&5 +$as_echo "$as_me: error: missing --with-petsc-dir argument for parallel compilation!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + +# Check whether --with-petsc-arch was given. +if test "${with_petsc_arch+set}" = set; then + withval=$with_petsc_arch; PETSC_ARCH=$withval +else + PETSC_ARCH="" +fi + + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ARCH" = "" ; then + { { $as_echo "$as_me:$LINENO: error: missing --with-petsc-arch argument for parallel compilation!" >&5 +$as_echo "$as_me: error: missing --with-petsc-arch argument for parallel compilation!" >&2;} + { (exit 1); exit 1; }; } + fi + fi + + { $as_echo "$as_me:$LINENO: checking for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH" >&5 +$as_echo_n "checking for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH... " >&6; } + + if test -d "$PETSC_ROOT"; then + + if test -d "$PETSC_ROOT/bmake/$PETSC_ARCH"; then + + PETSCINCL="-I$PETSC_ROOT/include -I$PETSC_ROOT/ -I$PETSC_ROOT/bmake/$PETSC_ARCH -I$PETSC_ROOT/src/mat/impls/dense/mpi/plapack/" + PETSCLIB="-L$PETSC_ROOT/lib/$PETSC_ARCH -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts" + + + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_PETSC_ 1 +_ACEOF + + + + + HAVE_PETSC=yes + else + HAVE_PETSC=no + fi + else + HAVE_PETSC=no + fi + + if test $HAVE_PETSC = no; then + if test "$PARALLEL_VALUE" = "yes" ; then + { { $as_echo "$as_me:$LINENO: error: could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!" >&5 +$as_echo "$as_me: error: could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!" >&2;} + { (exit 1); exit 1; }; } + fi + else + { $as_echo "$as_me:$LINENO: result: $HAVE_PETSC" >&5 +$as_echo "$HAVE_PETSC" >&6; } + fi + + + +# Check whether --with-slepc-dir was given. +if test "${with_slepc_dir+set}" = set; then + withval=$with_slepc_dir; SLEPC_ROOT=$withval +else + SLEPC_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Slepc headers and libraries in $SLEPC_ROOT" >&5 +$as_echo_n "checking for Slepc headers and libraries in $SLEPC_ROOT... " >&6; } + if test -d "$SLEPC_ROOT"; then + + + HAVE_SLEPC=yes + SLEPCINCL=-I"$SLEPC_ROOT/include" + SLEPCLIB=-L"$SLEPC_ROOT/lib/ -lslepc" + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_SLEPC_ 1 +_ACEOF + + + + else + HAVE_SLEPC=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_SLEPC" >&5 +$as_echo "$HAVE_SLEPC" >&6; } + + +# Check whether --with-scalapack-dir was given. +if test "${with_scalapack_dir+set}" = set; then + withval=$with_scalapack_dir; SCALAPACK_ROOT=$withval +else + SCALAPACK_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Scalapack headers and libraries in $SCALAPACK_ROOT" >&5 +$as_echo_n "checking for Scalapack headers and libraries in $SCALAPACK_ROOT... " >&6; } + if test -d "$SCALAPACK_ROOT"; then + + + HAVE_SCALAPACK=yes + SCALAPACKLIB=-L"$SCALAPACK_ROOT/ -lscalapack" + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_SCALAPACK_ 1 +_ACEOF + + + else + HAVE_SCALAPACK=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_SCALAPACK" >&5 +$as_echo "$HAVE_SCALAPACK" >&6; } + + +# Check whether --with-blas-lapack-dir was given. +if test "${with_blas_lapack_dir+set}" = set; then + withval=$with_blas_lapack_dir; BLASLAPACK_ROOT=$withval +else + BLASLAPACK_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Blas and Lapack headers and libraries in $BLASLAPACK_ROOT" >&5 +$as_echo_n "checking for Blas and Lapack headers and libraries in $BLASLAPACK_ROOT... " >&6; } + if test -d "$BLASLAPACK_ROOT"; then + + + HAVE_BLASLAPACK=yes + BLASLAPACKINCL="" + BLASLAPACKLIB=-L"$BLASLAPACK_ROOT -lmkl_lapack -lmkl -lguide" + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_BLASLAPACK_ 1 +_ACEOF + + + + else + HAVE_BLASLAPACK=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_BLASLAPACK" >&5 +$as_echo "$HAVE_BLASLAPACK" >&6; } + + + +# Check whether --with-plapack-dir was given. +if test "${with_plapack_dir+set}" = set; then + withval=$with_plapack_dir; PLAPACK_ROOT=$withval +else + PLAPACK_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Plapack headers and libraries in $PLAPACK_ROOT" >&5 +$as_echo_n "checking for Plapack headers and libraries in $PLAPACK_ROOT... " >&6; } + if test -d "$PLAPACK_ROOT"; then + + + HAVE_PLAPACK=yes + PLAPACKINCL=-I"$PLAPACK_ROOT/INCLUDE" + PLAPACKLIB=-L"$PLAPACK_ROOT/ -lPLAPACK" + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_PLAPACK_ 1 +_ACEOF + + + + else + HAVE_PLAPACK=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_PLAPACK" >&5 +$as_echo "$HAVE_PLAPACK" >&6; } + + +# Check whether --with-mumps-dir was given. +if test "${with_mumps_dir+set}" = set; then + withval=$with_mumps_dir; MUMPS_ROOT=$withval +else + MUMPS_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Mumps headers and libraries in $MUMPS_ROOT" >&5 +$as_echo_n "checking for Mumps headers and libraries in $MUMPS_ROOT... " >&6; } + if test -d "$MUMPS_ROOT"; then + + HAVE_MUMPS=yes + MUMPSINCL=-I"$MUMPS_ROOT/include" + MUMPSLIB=-L"$MUMPS_ROOT/lib -ldmumps -lcmumps -lpord" + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_MUMPS_ 1 +_ACEOF + + + + else + HAVE_MUMPS=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_MUMPS" >&5 +$as_echo "$HAVE_MUMPS" >&6; } + + +# Check whether --with-blacs-dir was given. +if test "${with_blacs_dir+set}" = set; then + withval=$with_blacs_dir; BLACS_ROOT=$withval +else + BLACS_ROOT="" +fi + + + { $as_echo "$as_me:$LINENO: checking for Blacs headers and libraries in $BLACS_ROOT" >&5 +$as_echo_n "checking for Blacs headers and libraries in $BLACS_ROOT... " >&6; } + if test -d "$BLACS_ROOT"; then + + HAVE_BLACS=yes + BLACSINCL="" + BLACSLIB=-L"$BLACS_ROOT/ -lblacs" + + +cat >>confdefs.h <<\_ACEOF +#define _HAVE_BLACS_ 1 +_ACEOF + + + + else + HAVE_BLACS=no + fi + { $as_echo "$as_me:$LINENO: result: $HAVE_BLACS" >&5 +$as_echo "$HAVE_BLACS" >&6; } + + + + + +ac_config_files="$ac_config_files Makefile src/Makefile src/c/Makefile src/mex/Makefile bin/Makefile" + +cat >confcache <<\_ACEOF +# This file is a shell script that caches the results of configure +# tests run on this system so they can be shared between configure +# scripts and configure runs, see configure's option --config-cache. +# It is not useful on other systems. 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We invoke sed twice because it is the + # simplest approach to changing $(DEPDIR) to its actual value in the + # expansion. + for file in `sed -n " + s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \ + sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do + # Make sure the directory exists. + test -f "$dirpart/$file" && continue + fdir=`$as_dirname -- "$file" || +$as_expr X"$file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ + X"$file" : 'X\(//\)[^/]' \| \ + X"$file" : 'X\(//\)$' \| \ + X"$file" : 'X\(/\)' \| . 2>/dev/null || +$as_echo X"$file" | + sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ + s//\1/ + q + } + /^X\(\/\/\)[^/].*/{ + s//\1/ + q + } + /^X\(\/\/\)$/{ + s//\1/ + q + } + /^X\(\/\).*/{ + s//\1/ + q + } + s/.*/./; q'` + { as_dir=$dirpart/$fdir + case $as_dir in #( + -*) as_dir=./$as_dir;; + esac + test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || { + as_dirs= + while :; do + case $as_dir in #( + *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'( + *) as_qdir=$as_dir;; + esac + as_dirs="'$as_qdir' $as_dirs" + as_dir=`$as_dirname -- "$as_dir" || +$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ + X"$as_dir" : 'X\(//\)[^/]' \| \ + X"$as_dir" : 'X\(//\)$' \| \ + X"$as_dir" : 'X\(/\)' \| . 2>/dev/null || +$as_echo X"$as_dir" | + sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ + s//\1/ + q + } + /^X\(\/\/\)[^/].*/{ + s//\1/ + q + } + /^X\(\/\/\)$/{ + s//\1/ + q + } + /^X\(\/\).*/{ + s//\1/ + q + } + s/.*/./; q'` + test -d "$as_dir" && break + done + test -z "$as_dirs" || eval "mkdir $as_dirs" + } || test -d "$as_dir" || { { $as_echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5 +$as_echo "$as_me: error: cannot create directory $as_dir" >&2;} + { (exit 1); exit 1; }; }; } + # echo "creating $dirpart/$file" + echo '# dummy' > "$dirpart/$file" + done +done + ;; + + esac +done # for ac_tag + + +{ (exit 0); exit 0; } +_ACEOF +chmod +x $CONFIG_STATUS +ac_clean_files=$ac_clean_files_save + +test $ac_write_fail = 0 || + { { $as_echo "$as_me:$LINENO: error: write failure creating $CONFIG_STATUS" >&5 +$as_echo "$as_me: error: write failure creating $CONFIG_STATUS" >&2;} + { (exit 1); exit 1; }; } + + +# configure is writing to config.log, and then calls config.status. +# config.status does its own redirection, appending to config.log. +# Unfortunately, on DOS this fails, as config.log is still kept open +# by configure, so config.status won't be able to write to it; its +# output is simply discarded. So we exec the FD to /dev/null, +# effectively closing config.log, so it can be properly (re)opened and +# appended to by config.status. When coming back to configure, we +# need to make the FD available again. +if test "$no_create" != yes; then + ac_cs_success=: + ac_config_status_args= + test "$silent" = yes && + ac_config_status_args="$ac_config_status_args --quiet" + exec 5>/dev/null + $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false + exec 5>>config.log + # Use ||, not &&, to avoid exiting from the if with $? = 1, which + # would make configure fail if this is the last instruction. + $ac_cs_success || { (exit 1); exit 1; } +fi +if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then + { $as_echo "$as_me:$LINENO: WARNING: unrecognized options: $ac_unrecognized_opts" >&5 +$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;} +fi + + Index: /issm/trunk/configure.ac =================================================================== --- /issm/trunk/configure.ac (revision 28275) +++ /issm/trunk/configure.ac (revision 1) @@ -1,50 +1,19 @@ -# Process this file with autoconf to produce a configure script. +AC_INIT(ISSM,[1.0], [Eric Larour ]) +AM_CONFIG_HEADER(config.h) +AC_CANONICAL_TARGET +AM_INIT_AUTOMAKE +AC_PROG_RANLIB +AC_PROG_CC +AC_PROG_CXX +AC_PROG_F77([ifort g77]) +AC_F77_LIBRARY_LDFLAGS +AM_PROG_CC_C_O +AC_PATH_XTRA +ISSM_OPTIONS +AC_CONFIG_FILES([Makefile + src/Makefile + src/c/Makefile + src/mex/Makefile + bin/Makefile]) +AC_OUTPUT -#AUTOCONF -AC_INIT([Ice-sheet and Sea-level System Model (ISSM)],[4.23],[https://issm.ess.uci.edu/forum/],[issm],[http://issm.jpl.nasa.gov]) #Initializing configure -AC_CONFIG_AUX_DIR([./aux-config]) # Put config files in aux-config -AC_CONFIG_MACRO_DIR([m4]) # m4 macros are located in m4 -m4_include([m4/issm_options.m4]) - -#print header -AC_MSG_NOTICE(============================================================================) -AC_MSG_NOTICE(= AC_PACKAGE_NAME AC_PACKAGE_VERSION configuration =) -AC_MSG_NOTICE(============================================================================) - -#Determine System type and OS -AC_CANONICAL_TARGET - -#Compilers -AC_PROG_CC([icc cl icl gcc]) -AC_PROG_CPP -AC_PROG_CXX([icpc cl icl g++]) -AC_PROG_F77([ifort g77 gfortran]) -AC_PROG_FC([ifort gfortran]) - -#AUTOMAKE -#Initialize automake and declare foreign so that we don't need a ChangeLog, INSTALL, etc -AM_INIT_AUTOMAKE([foreign]) -AC_CONFIG_HEADERS([./config.h]) # Config file must be config.h -AM_SILENT_RULES([yes]) # Reduce compilation and linking output (comment this line out or set value to "no" for verbose output) -AM_PROG_AR - -#Libtool -LT_INIT([win32-dll]) - -#Run issm_options.m4 -ISSM_OPTIONS - -#List all Makefiles -AC_CONFIG_FILES([ - Makefile - src/Makefile - src/c/Makefile - src/wrappers/Makefile - src/wrappers/python/Makefile - src/wrappers/matlab/Makefile - src/wrappers/javascript/Makefile - src/m/Makefile -]) - -#End of configure.ac -AC_OUTPUT Index: /issm/trunk/configure.sh =================================================================== --- /issm/trunk/configure.sh (revision 1) +++ /issm/trunk/configure.sh (revision 1) @@ -0,0 +1,6 @@ +#!/bin/sh + +./configure --prefix=/u/astrid1/larour/issm-1.0 --with-matlab-dir=/usr/local/pkgs/matlab-7.6/ --with-triangle-dir=/u/astrid1/larour/issm-1.0/packages/triangle/install --with-metis-dir=/u/astrid1/larour/issm-1.0/packages/metis/install --with-petsc-dir=/u/astrid1/larour/issm-1.0/packages/petsc/install --with-mpi-include=/u/astrid1/larour/issm-1.0/packages/mpich2/install/include --with-mpi-lib="-L/u/astrid1/larour/issm-1.0/packages/mpich2/install/lib/ -lmpich" --with-petsc-arch=linux-gnu-amd64 +exit +make -j 8 +make install Index: /issm/trunk/contributors.txt =================================================================== --- /issm/trunk/contributors.txt (revision 1) +++ /issm/trunk/contributors.txt (revision 1) @@ -0,0 +1,12 @@ +We thank the following contributors for their help in making ISSM better! + +Robert Crippen, Jet Propulsion Laboratory. robbert.crippen@jpl.nasa.gov +HoleFiller routines to plug incomplete datasets. See HoleFiller module in src/m/matlab/utils + +SuiteSparse from Tim Davis, Assoc. Prof.Room E338 CSE Building +P.O. Box 116120 University of Florida Gainesville, FL 32611-6120 352/392-1481 +email: my last name AT cise.ufl.edu. + +Point Inclusion in Polygon Test (pnpoly.c used in Utils/Arguscontourtomesh/IsInPoly.c) +W. Randolph Franklin (WRF) +http://www.ecse.rpi.edu/Homepages/wrf/Research/Short_Notes/pnpoly.html Index: /issm/trunk/cron/README =================================================================== --- /issm/trunk/cron/README (revision 1) +++ /issm/trunk/cron/README (revision 1) @@ -0,0 +1,16 @@ +The Cron directory holds scripts that can be used to run +jobs periodically on *nix systems. + +Just add an entry in the cron table to run the ice.sh script, +and all the scripts in this directory will be taken care of. + +For example, if you add: + +5 5 * * * cd $ICEHOME/Cron && ./ice.sh + +This will run all the scripts in the Cron directory, every day, at 5:05 am. + + + +If users want to add their own scripts, just add the script to the Cron directory and +add an entry in the ice.sh for this script. Index: /issm/trunk/cron/ice.sh =================================================================== --- /issm/trunk/cron/ice.sh (revision 1) +++ /issm/trunk/cron/ice.sh (revision 1) @@ -0,0 +1,8 @@ +#!/bin/bash + + +#Run tagging of ICE code +./tag.sh + +#Run nightly run +./nightlyrun.sh Index: /issm/trunk/cron/killingforeign.sh =================================================================== --- /issm/trunk/cron/killingforeign.sh (revision 1) +++ /issm/trunk/cron/killingforeign.sh (revision 1) @@ -0,0 +1,20 @@ +#!/bin/bash +#This script will run anything popping up in the current directory, using the Cielo +#software. + +#Get paths correctly setup +source ~/.bash_profile + +#Ok, we are being launched by the cron job. We are going through all the files, detecting which +#ones have a .kill attached to them. source the kill file. + +numberoffiles=`ls *.kill 2> /dev/null | wc -l` + +if [[ $numberoffiles != 0 ]] +then + for i in *.kill + do + name=`echo $i | sed 's/.kill//'` + source $name.kill + done +fi Index: /issm/trunk/cron/linux_cronfile =================================================================== --- /issm/trunk/cron/linux_cronfile (revision 1) +++ /issm/trunk/cron/linux_cronfile (revision 1) @@ -0,0 +1,3 @@ +#05 0 * * * cd $HOME/Ice/ice1/cron/ && ./ice.sh +*/5 * * * * cd $HOME/TestingForeign/ && source /u/wilkes-r1b/larour/Ice/ice1.proto/cron/testingforeign.sh +*/5 * * * * cd $HOME/TestingForeign/ && source /u/wilkes-r1b/larour/Ice/ice1.proto/cron/killingforeign.sh Index: /issm/trunk/cron/list =================================================================== --- /issm/trunk/cron/list (revision 1) +++ /issm/trunk/cron/list (revision 1) @@ -0,0 +1,11 @@ +CVS +ice.sh +killingforeign.sh +linux_cronfile +list +mailinglist +Makefile.am +nightlyrun.sh +README +tag.sh +testingforeign.sh Index: /issm/trunk/cron/mailinglist =================================================================== --- /issm/trunk/cron/mailinglist (revision 1) +++ /issm/trunk/cron/mailinglist (revision 1) @@ -0,0 +1,2 @@ +#Mailing list for nightly runs +MAILINGLIST="ala@jpl.nasa.gov eric.larour@jpl.nasa.gov mathieu.morlighem@jpl.nasa.gov helene.seroussi@jpl.nasa.gov" Index: /issm/trunk/cron/nightlyrun.sh =================================================================== --- /issm/trunk/cron/nightlyrun.sh (revision 1) +++ /issm/trunk/cron/nightlyrun.sh (revision 1) @@ -0,0 +1,74 @@ +#!/bin/bash +#This bash script calls the nightlyrun.m matlab file to run our nightly test decks. +#It then processes the results and sends an email to the Ice developpers. + +#Some functions +function today_date { +suffix=`date | awk '{printf("%s-%s-%s",$2,$3,$6);}'` +echo $suffix; +} + +export ISSM_DIR="/home/seroussi/Ice/ice1/cron/ice1" + +ICE_RELEASE="ice1"; +ICE_REPOSITORY="/home/larour/Ice_Repository"; + +#Figure out today's date +today=`today_date`; +host_name=`hostname`; + +#Erase code +rm -rf $ICE_RELEASE + +#Fetch cvs code +cvs -d $ICE_REPOSITORY co -P $ICE_RELEASE + +source $ISSM_DIR/etc/environment.sh + +#Go to the ice directory +cd $ICE_RELEASE +ICEDIR=`pwd`; + +#install ISSM +cd scripts +sh quickinstall.sh +cd .. + +#Figure out mailing list +source cron/mailinglist + +#Launch matlab and the nightly run script +matlab -nodisplay > ./nightly.log << EOF +startup +nightlyrun; +EOF + +#Process log for errors +cat nightly.log | grep ERROR > errors1.log +cat nightly.log | grep SUCCESS > errors2.log +cat errors1.log errors2.log > errors.log + +#Mail +ERRORS=`cat errors.log` +if [ `expr length "$ERRORS"` = "0" ]; then + for i in `echo $MAILINGLIST` + do + mail -s "Nightly runs of $ICE_RELEASE on: $host_name. Date:$today. DID NOT WORK CORRECTLY" $i < nightly.log + done +else + for i in `echo $MAILINGLIST` + do + mail -s "Nightly runs of $ICE_RELEASE on: $host_name. Date:$today." $i < errors.log + done +fi + +#Erase log and error logs +rm -rf nightly.log errors1.log errors2.log errors.log + +#Erase ice code +cd .. +rm -rf $ICE_RELEASE + +#back to old ISSM_DIR +ISSM_DIR=$OLDISSM_DIR +export ISSM_DIR Index: /issm/trunk/cron/tag.sh =================================================================== --- /issm/trunk/cron/tag.sh (revision 1) +++ /issm/trunk/cron/tag.sh (revision 1) @@ -0,0 +1,39 @@ +#!/bin/bash + +release=ice1 +repository=/home/larour/Ice_Repository +home=/home/seroussi +current=`pwd` + +#Functions + +function today_date { +suffix=`date | awk '{printf("%s-%s-%s",$2,$3,$6);}'` +echo $suffix; +} + +#Date +today=`today_date`; + +#Go to home directory +cd $home + +#Erase to make a fresh tag; +if [ -d $release ] +then + rm -rf $release +fi + +#Fetch cvs release +cvs -d $repository co -P $release + +#Tag cvs +cd $release +cvs -d $repository tag -R $today +cd ../ + +#Erase cvs release +rm -rf "./$release" + +#Go back to current directory +cd $current Index: /issm/trunk/cron/testingforeign.sh =================================================================== --- /issm/trunk/cron/testingforeign.sh (revision 1) +++ /issm/trunk/cron/testingforeign.sh (revision 1) @@ -0,0 +1,25 @@ +#!/bin/bash +#This script will run anything popping up in the current directory, using the Cielo +#software. + +#Get paths correctly setup +source ~/.bash_profile + +#Ok, we are being launched by the cron job. We are going through all the files, detecting which +#ones have a .queue attached to them. For those files, check whether a .errlog and .outlog are already present. +#If they are, skip this file, it is already being run. For the other ones, source the queue file. + +numberoffiles=`ls *.queue 2> /dev/null | wc -l` + +if [[ $numberoffiles != 0 ]] +then + for i in *.queue + do + name=`echo $i | sed 's/.queue//'` + if [ ! -e $name.outlog ] + then + #Launch "name" job + source $name.queue + fi + done +fi Index: /issm/trunk/depcomp =================================================================== --- /issm/trunk/depcomp (revision 1) +++ /issm/trunk/depcomp (revision 1) @@ -0,0 +1,1 @@ +link /u/wilkes-r1b/larour/Bin/automake/share/automake-1.10/depcomp Index: /issm/trunk/doc/developerguide/Makefile =================================================================== --- /issm/trunk/doc/developerguide/Makefile (revision 1) +++ /issm/trunk/doc/developerguide/Makefile (revision 1) @@ -0,0 +1,13 @@ +#Makefile for developper guide + +all: matlabhtml chtml + +matlabhtml: + rm -rf matlabhtml + ./creatematlabhtmldoc.sh + +chtml: + ./createhtmldoc.sh + +clean: + rm -rf chtml matlabhtml Index: /issm/trunk/doc/developerguide/createhtmldoc.sh =================================================================== --- /issm/trunk/doc/developerguide/createhtmldoc.sh (revision 1) +++ /issm/trunk/doc/developerguide/createhtmldoc.sh (revision 1) @@ -0,0 +1,17 @@ +#!/bin/bash + +#Go to root directory, because doxygen seems to have a problem running otherwise. +cd $ISSM_DIR + +#Symlink the doxygen configuration file to root dir. +ln -s "$ISSM_DIR/doc/developerguide/doxygen.config" ./doxygen.config + +#Run doxygen +doxygen doxygen.config + +#Erase symlink +rm doxygen.config + +#change index and put it in doc +cd $ISSM_DIR/doc/ +cat developerguide/chtml/index.html | sed -e "s/tabs.css/developerguide\/chtml\/tabs.css/g" | sed -e "s/doxygen.css/developerguide\/chtml\/doxygen.css/g" | sed -e "s/href=\"index.html/href=\"developerguide\/chtml\/index.html/g" | sed -e "s/annotated.html/developerguide\/chtml\/annotated.html/g" | sed -e "s/files.html/developerguide\/chtml\/files.html/g" > index.html Index: /issm/trunk/doc/developerguide/creatematlabhtmldoc.sh =================================================================== --- /issm/trunk/doc/developerguide/creatematlabhtmldoc.sh (revision 1) +++ /issm/trunk/doc/developerguide/creatematlabhtmldoc.sh (revision 1) @@ -0,0 +1,22 @@ +#!/bin/bash + +#go to the main directory +cd $ISSM_DIR + +#launch matlab +matlab -nojvm << EOF +%get ISSM_DIR, brief name +[status,ISSM_DIR_BRIEF]=system('basename `pwd`'); +ISSM_DIR_BRIEF=ISSM_DIR_BRIEF(1:end-1); %skip the \n character +if status~=0 | isempty(ISSM_DIR_BRIEF) | length(ISSM_DIR_BRIEF)==1, + error('startup error message: could not retrieve ISSM_DIR brief name'); + end + + cd ../ + + %Here are the subdirectories we want to go through: + mfiles={[ISSM_DIR_BRIEF '/src/m']}; + + %run m2html, and dump the documentation in ISSM_DIR/Doc/developerguide/m2htmldoc + m2html('htmldir',[ISSM_DIR '/doc/developerguide/matlabhtml'],'recursive','on','source','on','syntaxHighlighting','on','globalHypertextLinks','on','global','on','template','frame', 'index','menu','mFiles',mfiles); +EOF Index: /issm/trunk/doc/developerguide/doxygen.config =================================================================== --- /issm/trunk/doc/developerguide/doxygen.config (revision 1) +++ /issm/trunk/doc/developerguide/doxygen.config (revision 1) @@ -0,0 +1,1510 @@ +# Doxyfile 1.5.8 + +# This file describes the settings to be used by the documentation system +# doxygen (www.doxygen.org) for a project +# +# All text after a hash (#) is considered a comment and will be ignored +# The format is: +# TAG = value [value, ...] +# For lists items can also be appended using: +# TAG += value [value, ...] +# Values that contain spaces should be placed between quotes (" ") + +#--------------------------------------------------------------------------- +# Project related configuration options +#--------------------------------------------------------------------------- + +# This tag specifies the encoding used for all characters in the config file +# that follow. The default is UTF-8 which is also the encoding used for all +# text before the first occurrence of this tag. Doxygen uses libiconv (or the +# iconv built into libc) for the transcoding. See +# http://www.gnu.org/software/libiconv for the list of possible encodings. + +DOXYFILE_ENCODING = UTF-8 + +# The PROJECT_NAME tag is a single word (or a sequence of words surrounded +# by quotes) that should identify the project. + +PROJECT_NAME = "ISSM" + +# The PROJECT_NUMBER tag can be used to enter a project or revision number. +# This could be handy for archiving the generated documentation or +# if some version control system is used. + +PROJECT_NUMBER = "1.0" + +# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) +# base path where the generated documentation will be put. +# If a relative path is entered, it will be relative to the location +# where doxygen was started. If left blank the current directory will be used. + +OUTPUT_DIRECTORY = doc/developerguide + +# If the CREATE_SUBDIRS tag is set to YES, then doxygen will create +# 4096 sub-directories (in 2 levels) under the output directory of each output +# format and will distribute the generated files over these directories. +# Enabling this option can be useful when feeding doxygen a huge amount of +# source files, where putting all generated files in the same directory would +# otherwise cause performance problems for the file system. + +CREATE_SUBDIRS = NO + +# The OUTPUT_LANGUAGE tag is used to specify the language in which all +# documentation generated by doxygen is written. Doxygen will use this +# information to generate all constant output in the proper language. +# The default language is English, other supported languages are: +# Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional, +# Croatian, Czech, Danish, Dutch, Farsi, Finnish, French, German, Greek, +# Hungarian, Italian, Japanese, Japanese-en (Japanese with English messages), +# Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian, Polish, +# Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak, Slovene, +# Spanish, Swedish, and Ukrainian. + +OUTPUT_LANGUAGE = English + +# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will +# include brief member descriptions after the members that are listed in +# the file and class documentation (similar to JavaDoc). +# Set to NO to disable this. + +BRIEF_MEMBER_DESC = YES + +# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend +# the brief description of a member or function before the detailed description. +# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the +# brief descriptions will be completely suppressed. + +REPEAT_BRIEF = YES + +# This tag implements a quasi-intelligent brief description abbreviator +# that is used to form the text in various listings. Each string +# in this list, if found as the leading text of the brief description, will be +# stripped from the text and the result after processing the whole list, is +# used as the annotated text. Otherwise, the brief description is used as-is. +# If left blank, the following values are used ("$name" is automatically +# replaced with the name of the entity): "The $name class" "The $name widget" +# "The $name file" "is" "provides" "specifies" "contains" +# "represents" "a" "an" "the" + +ABBREVIATE_BRIEF = + +# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then +# Doxygen will generate a detailed section even if there is only a brief +# description. + +ALWAYS_DETAILED_SEC = NO + +# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all +# inherited members of a class in the documentation of that class as if those +# members were ordinary class members. Constructors, destructors and assignment +# operators of the base classes will not be shown. + +INLINE_INHERITED_MEMB = NO + +# If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full +# path before files name in the file list and in the header files. If set +# to NO the shortest path that makes the file name unique will be used. + +FULL_PATH_NAMES = YES + +# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag +# can be used to strip a user-defined part of the path. Stripping is +# only done if one of the specified strings matches the left-hand part of +# the path. The tag can be used to show relative paths in the file list. +# If left blank the directory from which doxygen is run is used as the +# path to strip. + +STRIP_FROM_PATH = + +# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of +# the path mentioned in the documentation of a class, which tells +# the reader which header file to include in order to use a class. +# If left blank only the name of the header file containing the class +# definition is used. Otherwise one should specify the include paths that +# are normally passed to the compiler using the -I flag. + +STRIP_FROM_INC_PATH = + +# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter +# (but less readable) file names. This can be useful is your file systems +# doesn't support long names like on DOS, Mac, or CD-ROM. + +SHORT_NAMES = NO + +# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen +# will interpret the first line (until the first dot) of a JavaDoc-style +# comment as the brief description. If set to NO, the JavaDoc +# comments will behave just like regular Qt-style comments +# (thus requiring an explicit @brief command for a brief description.) + +JAVADOC_AUTOBRIEF = NO + +# If the QT_AUTOBRIEF tag is set to YES then Doxygen will +# interpret the first line (until the first dot) of a Qt-style +# comment as the brief description. If set to NO, the comments +# will behave just like regular Qt-style comments (thus requiring +# an explicit \brief command for a brief description.) + +QT_AUTOBRIEF = NO + +# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen +# treat a multi-line C++ special comment block (i.e. a block of //! or /// +# comments) as a brief description. This used to be the default behaviour. +# The new default is to treat a multi-line C++ comment block as a detailed +# description. Set this tag to YES if you prefer the old behaviour instead. + +MULTILINE_CPP_IS_BRIEF = NO + +# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented +# member inherits the documentation from any documented member that it +# re-implements. + +INHERIT_DOCS = YES + +# If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce +# a new page for each member. If set to NO, the documentation of a member will +# be part of the file/class/namespace that contains it. + +SEPARATE_MEMBER_PAGES = NO + +# The TAB_SIZE tag can be used to set the number of spaces in a tab. +# Doxygen uses this value to replace tabs by spaces in code fragments. + +TAB_SIZE = 8 + +# This tag can be used to specify a number of aliases that acts +# as commands in the documentation. An alias has the form "name=value". +# For example adding "sideeffect=\par Side Effects:\n" will allow you to +# put the command \sideeffect (or @sideeffect) in the documentation, which +# will result in a user-defined paragraph with heading "Side Effects:". +# You can put \n's in the value part of an alias to insert newlines. + +ALIASES = + +# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C +# sources only. Doxygen will then generate output that is more tailored for C. +# For instance, some of the names that are used will be different. The list +# of all members will be omitted, etc. + +OPTIMIZE_OUTPUT_FOR_C = YES + +# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java +# sources only. Doxygen will then generate output that is more tailored for +# Java. For instance, namespaces will be presented as packages, qualified +# scopes will look different, etc. + +OPTIMIZE_OUTPUT_JAVA = NO + +# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran +# sources only. Doxygen will then generate output that is more tailored for +# Fortran. + +OPTIMIZE_FOR_FORTRAN = NO + +# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL +# sources. Doxygen will then generate output that is tailored for +# VHDL. + +OPTIMIZE_OUTPUT_VHDL = NO + +# Doxygen selects the parser to use depending on the extension of the files it parses. +# With this tag you can assign which parser to use for a given extension. +# Doxygen has a built-in mapping, but you can override or extend it using this tag. +# The format is ext=language, where ext is a file extension, and language is one of +# the parsers supported by doxygen: IDL, Java, Javascript, C#, C, C++, D, PHP, +# Objective-C, Python, Fortran, VHDL, C, C++. For instance to make doxygen treat +# .inc files as Fortran files (default is PHP), and .f files as C (default is Fortran), +# use: inc=Fortran f=C + +EXTENSION_MAPPING = + +# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want +# to include (a tag file for) the STL sources as input, then you should +# set this tag to YES in order to let doxygen match functions declarations and +# definitions whose arguments contain STL classes (e.g. func(std::string); v.s. +# func(std::string) {}). This also make the inheritance and collaboration +# diagrams that involve STL classes more complete and accurate. + +BUILTIN_STL_SUPPORT = NO + +# If you use Microsoft's C++/CLI language, you should set this option to YES to +# enable parsing support. + +CPP_CLI_SUPPORT = NO + +# Set the SIP_SUPPORT tag to YES if your project consists of sip sources only. +# Doxygen will parse them like normal C++ but will assume all classes use public +# instead of private inheritance when no explicit protection keyword is present. + +SIP_SUPPORT = NO + +# For Microsoft's IDL there are propget and propput attributes to indicate getter +# and setter methods for a property. Setting this option to YES (the default) +# will make doxygen to replace the get and set methods by a property in the +# documentation. This will only work if the methods are indeed getting or +# setting a simple type. If this is not the case, or you want to show the +# methods anyway, you should set this option to NO. + +IDL_PROPERTY_SUPPORT = YES + +# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC +# tag is set to YES, then doxygen will reuse the documentation of the first +# member in the group (if any) for the other members of the group. By default +# all members of a group must be documented explicitly. + +DISTRIBUTE_GROUP_DOC = NO + +# Set the SUBGROUPING tag to YES (the default) to allow class member groups of +# the same type (for instance a group of public functions) to be put as a +# subgroup of that type (e.g. under the Public Functions section). Set it to +# NO to prevent subgrouping. Alternatively, this can be done per class using +# the \nosubgrouping command. + +SUBGROUPING = YES + +# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum +# is documented as struct, union, or enum with the name of the typedef. So +# typedef struct TypeS {} TypeT, will appear in the documentation as a struct +# with name TypeT. When disabled the typedef will appear as a member of a file, +# namespace, or class. And the struct will be named TypeS. This can typically +# be useful for C code in case the coding convention dictates that all compound +# types are typedef'ed and only the typedef is referenced, never the tag name. + +TYPEDEF_HIDES_STRUCT = YES + +# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to +# determine which symbols to keep in memory and which to flush to disk. +# When the cache is full, less often used symbols will be written to disk. +# For small to medium size projects (<1000 input files) the default value is +# probably good enough. For larger projects a too small cache size can cause +# doxygen to be busy swapping symbols to and from disk most of the time +# causing a significant performance penality. +# If the system has enough physical memory increasing the cache will improve the +# performance by keeping more symbols in memory. Note that the value works on +# a logarithmic scale so increasing the size by one will rougly double the +# memory usage. The cache size is given by this formula: +# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0, +# corresponding to a cache size of 2^16 = 65536 symbols + +SYMBOL_CACHE_SIZE = 0 + +#--------------------------------------------------------------------------- +# Build related configuration options +#--------------------------------------------------------------------------- + +# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in +# documentation are documented, even if no documentation was available. +# Private class members and static file members will be hidden unless +# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES + +EXTRACT_ALL = NO + +# If the EXTRACT_PRIVATE tag is set to YES all private members of a class +# will be included in the documentation. + +EXTRACT_PRIVATE = YES + +# If the EXTRACT_STATIC tag is set to YES all static members of a file +# will be included in the documentation. + +EXTRACT_STATIC = NO + +# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs) +# defined locally in source files will be included in the documentation. +# If set to NO only classes defined in header files are included. + +EXTRACT_LOCAL_CLASSES = YES + +# This flag is only useful for Objective-C code. When set to YES local +# methods, which are defined in the implementation section but not in +# the interface are included in the documentation. +# If set to NO (the default) only methods in the interface are included. + +EXTRACT_LOCAL_METHODS = NO + +# If this flag is set to YES, the members of anonymous namespaces will be +# extracted and appear in the documentation as a namespace called +# 'anonymous_namespace{file}', where file will be replaced with the base +# name of the file that contains the anonymous namespace. By default +# anonymous namespace are hidden. + +EXTRACT_ANON_NSPACES = NO + +# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all +# undocumented members of documented classes, files or namespaces. +# If set to NO (the default) these members will be included in the +# various overviews, but no documentation section is generated. +# This option has no effect if EXTRACT_ALL is enabled. + +HIDE_UNDOC_MEMBERS = NO + +# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all +# undocumented classes that are normally visible in the class hierarchy. +# If set to NO (the default) these classes will be included in the various +# overviews. This option has no effect if EXTRACT_ALL is enabled. + +HIDE_UNDOC_CLASSES = NO + +# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all +# friend (class|struct|union) declarations. +# If set to NO (the default) these declarations will be included in the +# documentation. + +HIDE_FRIEND_COMPOUNDS = NO + +# If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any +# documentation blocks found inside the body of a function. +# If set to NO (the default) these blocks will be appended to the +# function's detailed documentation block. + +HIDE_IN_BODY_DOCS = NO + +# The INTERNAL_DOCS tag determines if documentation +# that is typed after a \internal command is included. If the tag is set +# to NO (the default) then the documentation will be excluded. +# Set it to YES to include the internal documentation. + +INTERNAL_DOCS = NO + +# If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate +# file names in lower-case letters. If set to YES upper-case letters are also +# allowed. This is useful if you have classes or files whose names only differ +# in case and if your file system supports case sensitive file names. Windows +# and Mac users are advised to set this option to NO. + +CASE_SENSE_NAMES = YES + +# If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen +# will show members with their full class and namespace scopes in the +# documentation. If set to YES the scope will be hidden. + +HIDE_SCOPE_NAMES = NO + +# If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen +# will put a list of the files that are included by a file in the documentation +# of that file. + +SHOW_INCLUDE_FILES = YES + +# If the INLINE_INFO tag is set to YES (the default) then a tag [inline] +# is inserted in the documentation for inline members. + +INLINE_INFO = YES + +# If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen +# will sort the (detailed) documentation of file and class members +# alphabetically by member name. If set to NO the members will appear in +# declaration order. + +SORT_MEMBER_DOCS = YES + +# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the +# brief documentation of file, namespace and class members alphabetically +# by member name. If set to NO (the default) the members will appear in +# declaration order. + +SORT_BRIEF_DOCS = NO + +# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the +# hierarchy of group names into alphabetical order. If set to NO (the default) +# the group names will appear in their defined order. + +SORT_GROUP_NAMES = NO + +# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be +# sorted by fully-qualified names, including namespaces. If set to +# NO (the default), the class list will be sorted only by class name, +# not including the namespace part. +# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES. +# Note: This option applies only to the class list, not to the +# alphabetical list. + +SORT_BY_SCOPE_NAME = NO + +# The GENERATE_TODOLIST tag can be used to enable (YES) or +# disable (NO) the todo list. This list is created by putting \todo +# commands in the documentation. + +GENERATE_TODOLIST = YES + +# The GENERATE_TESTLIST tag can be used to enable (YES) or +# disable (NO) the test list. This list is created by putting \test +# commands in the documentation. + +GENERATE_TESTLIST = YES + +# The GENERATE_BUGLIST tag can be used to enable (YES) or +# disable (NO) the bug list. This list is created by putting \bug +# commands in the documentation. + +GENERATE_BUGLIST = YES + +# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or +# disable (NO) the deprecated list. This list is created by putting +# \deprecated commands in the documentation. + +GENERATE_DEPRECATEDLIST= YES + +# The ENABLED_SECTIONS tag can be used to enable conditional +# documentation sections, marked by \if sectionname ... \endif. + +ENABLED_SECTIONS = + +# The MAX_INITIALIZER_LINES tag determines the maximum number of lines +# the initial value of a variable or define consists of for it to appear in +# the documentation. If the initializer consists of more lines than specified +# here it will be hidden. Use a value of 0 to hide initializers completely. +# The appearance of the initializer of individual variables and defines in the +# documentation can be controlled using \showinitializer or \hideinitializer +# command in the documentation regardless of this setting. + +MAX_INITIALIZER_LINES = 30 + +# Set the SHOW_USED_FILES tag to NO to disable the list of files generated +# at the bottom of the documentation of classes and structs. If set to YES the +# list will mention the files that were used to generate the documentation. + +SHOW_USED_FILES = YES + +# If the sources in your project are distributed over multiple directories +# then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy +# in the documentation. The default is NO. + +SHOW_DIRECTORIES = NO + +# Set the SHOW_FILES tag to NO to disable the generation of the Files page. +# This will remove the Files entry from the Quick Index and from the +# Folder Tree View (if specified). The default is YES. + +SHOW_FILES = YES + +# Set the SHOW_NAMESPACES tag to NO to disable the generation of the +# Namespaces page. +# This will remove the Namespaces entry from the Quick Index +# and from the Folder Tree View (if specified). The default is YES. + +SHOW_NAMESPACES = YES + +# The FILE_VERSION_FILTER tag can be used to specify a program or script that +# doxygen should invoke to get the current version for each file (typically from +# the version control system). Doxygen will invoke the program by executing (via +# popen()) the command , where is the value of +# the FILE_VERSION_FILTER tag, and is the name of an input file +# provided by doxygen. Whatever the program writes to standard output +# is used as the file version. See the manual for examples. + +FILE_VERSION_FILTER = + +# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed by +# doxygen. The layout file controls the global structure of the generated output files +# in an output format independent way. The create the layout file that represents +# doxygen's defaults, run doxygen with the -l option. You can optionally specify a +# file name after the option, if omitted DoxygenLayout.xml will be used as the name +# of the layout file. + +LAYOUT_FILE = + +#--------------------------------------------------------------------------- +# configuration options related to warning and progress messages +#--------------------------------------------------------------------------- + +# The QUIET tag can be used to turn on/off the messages that are generated +# by doxygen. Possible values are YES and NO. If left blank NO is used. + +QUIET = NO + +# The WARNINGS tag can be used to turn on/off the warning messages that are +# generated by doxygen. Possible values are YES and NO. If left blank +# NO is used. + +WARNINGS = YES + +# If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings +# for undocumented members. If EXTRACT_ALL is set to YES then this flag will +# automatically be disabled. + +WARN_IF_UNDOCUMENTED = YES + +# If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for +# potential errors in the documentation, such as not documenting some +# parameters in a documented function, or documenting parameters that +# don't exist or using markup commands wrongly. + +WARN_IF_DOC_ERROR = YES + +# This WARN_NO_PARAMDOC option can be abled to get warnings for +# functions that are documented, but have no documentation for their parameters +# or return value. If set to NO (the default) doxygen will only warn about +# wrong or incomplete parameter documentation, but not about the absence of +# documentation. + +WARN_NO_PARAMDOC = NO + +# The WARN_FORMAT tag determines the format of the warning messages that +# doxygen can produce. The string should contain the $file, $line, and $text +# tags, which will be replaced by the file and line number from which the +# warning originated and the warning text. Optionally the format may contain +# $version, which will be replaced by the version of the file (if it could +# be obtained via FILE_VERSION_FILTER) + +WARN_FORMAT = "$file:$line: $text" + +# The WARN_LOGFILE tag can be used to specify a file to which warning +# and error messages should be written. If left blank the output is written +# to stderr. + +WARN_LOGFILE = + +#--------------------------------------------------------------------------- +# configuration options related to the input files +#--------------------------------------------------------------------------- + +# The INPUT tag can be used to specify the files and/or directories that contain +# documented source files. You may enter file names like "myfile.cpp" or +# directories like "/usr/src/myproject". Separate the files or directories +# with spaces. + +INPUT = ./ + +# This tag can be used to specify the character encoding of the source files +# that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is +# also the default input encoding. Doxygen uses libiconv (or the iconv built +# into libc) for the transcoding. See http://www.gnu.org/software/libiconv for +# the list of possible encodings. + +INPUT_ENCODING = UTF-8 + +# If the value of the INPUT tag contains directories, you can use the +# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp +# and *.h) to filter out the source-files in the directories. If left +# blank the following patterns are tested: +# *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx +# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90 + +FILE_PATTERNS = *.c *.h *.dox + +# The RECURSIVE tag can be used to turn specify whether or not subdirectories +# should be searched for input files as well. Possible values are YES and NO. +# If left blank NO is used. + +RECURSIVE = YES + +# The EXCLUDE tag can be used to specify files and/or directories that should +# excluded from the INPUT source files. This way you can easily exclude a +# subdirectory from a directory tree whose root is specified with the INPUT tag. + +EXCLUDE = + +# The EXCLUDE_SYMLINKS tag can be used select whether or not files or +# directories that are symbolic links (a Unix filesystem feature) are excluded +# from the input. + +EXCLUDE_SYMLINKS = NO + +# If the value of the INPUT tag contains directories, you can use the +# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude +# certain files from those directories. Note that the wildcards are matched +# against the file with absolute path, so to exclude all test directories +# for example use the pattern */test/* + +EXCLUDE_PATTERNS = */packages/* */tests/* */examples/* + +# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names +# (namespaces, classes, functions, etc.) that should be excluded from the +# output. The symbol name can be a fully qualified name, a word, or if the +# wildcard * is used, a substring. Examples: ANamespace, AClass, +# AClass::ANamespace, ANamespace::*Test + +EXCLUDE_SYMBOLS = + +# The EXAMPLE_PATH tag can be used to specify one or more files or +# directories that contain example code fragments that are included (see +# the \include command). + +EXAMPLE_PATH = + +# If the value of the EXAMPLE_PATH tag contains directories, you can use the +# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp +# and *.h) to filter out the source-files in the directories. If left +# blank all files are included. + +EXAMPLE_PATTERNS = + +# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be +# searched for input files to be used with the \include or \dontinclude +# commands irrespective of the value of the RECURSIVE tag. +# Possible values are YES and NO. If left blank NO is used. + +EXAMPLE_RECURSIVE = NO + +# The IMAGE_PATH tag can be used to specify one or more files or +# directories that contain image that are included in the documentation (see +# the \image command). + +IMAGE_PATH = + +# The INPUT_FILTER tag can be used to specify a program that doxygen should +# invoke to filter for each input file. Doxygen will invoke the filter program +# by executing (via popen()) the command , where +# is the value of the INPUT_FILTER tag, and is the name of an +# input file. Doxygen will then use the output that the filter program writes +# to standard output. +# If FILTER_PATTERNS is specified, this tag will be +# ignored. + +INPUT_FILTER = + +# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern +# basis. +# Doxygen will compare the file name with each pattern and apply the +# filter if there is a match. +# The filters are a list of the form: +# pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further +# info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER +# is applied to all files. + +FILTER_PATTERNS = + +# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using +# INPUT_FILTER) will be used to filter the input files when producing source +# files to browse (i.e. when SOURCE_BROWSER is set to YES). + +FILTER_SOURCE_FILES = NO + +#--------------------------------------------------------------------------- +# configuration options related to source browsing +#--------------------------------------------------------------------------- + +# If the SOURCE_BROWSER tag is set to YES then a list of source files will +# be generated. Documented entities will be cross-referenced with these sources. +# Note: To get rid of all source code in the generated output, make sure also +# VERBATIM_HEADERS is set to NO. + +SOURCE_BROWSER = NO + +# Setting the INLINE_SOURCES tag to YES will include the body +# of functions and classes directly in the documentation. + +INLINE_SOURCES = NO + +# Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct +# doxygen to hide any special comment blocks from generated source code +# fragments. Normal C and C++ comments will always remain visible. + +STRIP_CODE_COMMENTS = YES + +# If the REFERENCED_BY_RELATION tag is set to YES +# then for each documented function all documented +# functions referencing it will be listed. + +REFERENCED_BY_RELATION = NO + +# If the REFERENCES_RELATION tag is set to YES +# then for each documented function all documented entities +# called/used by that function will be listed. + +REFERENCES_RELATION = NO + +# If the REFERENCES_LINK_SOURCE tag is set to YES (the default) +# and SOURCE_BROWSER tag is set to YES, then the hyperlinks from +# functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will +# link to the source code. +# Otherwise they will link to the documentation. + +REFERENCES_LINK_SOURCE = YES + +# If the USE_HTAGS tag is set to YES then the references to source code +# will point to the HTML generated by the htags(1) tool instead of doxygen +# built-in source browser. The htags tool is part of GNU's global source +# tagging system (see http://www.gnu.org/software/global/global.html). You +# will need version 4.8.6 or higher. + +USE_HTAGS = NO + +# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen +# will generate a verbatim copy of the header file for each class for +# which an include is specified. Set to NO to disable this. + +VERBATIM_HEADERS = YES + +#--------------------------------------------------------------------------- +# configuration options related to the alphabetical class index +#--------------------------------------------------------------------------- + +# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index +# of all compounds will be generated. Enable this if the project +# contains a lot of classes, structs, unions or interfaces. + +ALPHABETICAL_INDEX = NO + +# If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then +# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns +# in which this list will be split (can be a number in the range [1..20]) + +COLS_IN_ALPHA_INDEX = 5 + +# In case all classes in a project start with a common prefix, all +# classes will be put under the same header in the alphabetical index. +# The IGNORE_PREFIX tag can be used to specify one or more prefixes that +# should be ignored while generating the index headers. + +IGNORE_PREFIX = + +#--------------------------------------------------------------------------- +# configuration options related to the HTML output +#--------------------------------------------------------------------------- + +# If the GENERATE_HTML tag is set to YES (the default) Doxygen will +# generate HTML output. + +GENERATE_HTML = YES + +# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `html' will be used as the default path. + +HTML_OUTPUT = chtml + +# The HTML_FILE_EXTENSION tag can be used to specify the file extension for +# each generated HTML page (for example: .htm,.php,.asp). If it is left blank +# doxygen will generate files with .html extension. + +HTML_FILE_EXTENSION = .html + +# The HTML_HEADER tag can be used to specify a personal HTML header for +# each generated HTML page. If it is left blank doxygen will generate a +# standard header. + +HTML_HEADER = + +# The HTML_FOOTER tag can be used to specify a personal HTML footer for +# each generated HTML page. If it is left blank doxygen will generate a +# standard footer. + +HTML_FOOTER = + +# The HTML_STYLESHEET tag can be used to specify a user-defined cascading +# style sheet that is used by each HTML page. It can be used to +# fine-tune the look of the HTML output. If the tag is left blank doxygen +# will generate a default style sheet. Note that doxygen will try to copy +# the style sheet file to the HTML output directory, so don't put your own +# stylesheet in the HTML output directory as well, or it will be erased! + +HTML_STYLESHEET = + +# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, +# files or namespaces will be aligned in HTML using tables. If set to +# NO a bullet list will be used. + +HTML_ALIGN_MEMBERS = YES + +# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML +# documentation will contain sections that can be hidden and shown after the +# page has loaded. For this to work a browser that supports +# JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox +# Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari). + +HTML_DYNAMIC_SECTIONS = NO + +# If the GENERATE_DOCSET tag is set to YES, additional index files +# will be generated that can be used as input for Apple's Xcode 3 +# integrated development environment, introduced with OSX 10.5 (Leopard). +# To create a documentation set, doxygen will generate a Makefile in the +# HTML output directory. Running make will produce the docset in that +# directory and running "make install" will install the docset in +# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find +# it at startup. +# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more information. + +GENERATE_DOCSET = NO + +# When GENERATE_DOCSET tag is set to YES, this tag determines the name of the +# feed. A documentation feed provides an umbrella under which multiple +# documentation sets from a single provider (such as a company or product suite) +# can be grouped. + +DOCSET_FEEDNAME = "Doxygen generated docs" + +# When GENERATE_DOCSET tag is set to YES, this tag specifies a string that +# should uniquely identify the documentation set bundle. This should be a +# reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen +# will append .docset to the name. + +DOCSET_BUNDLE_ID = org.doxygen.Project + +# If the GENERATE_HTMLHELP tag is set to YES, additional index files +# will be generated that can be used as input for tools like the +# Microsoft HTML help workshop to generate a compiled HTML help file (.chm) +# of the generated HTML documentation. + +GENERATE_HTMLHELP = NO + +# If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can +# be used to specify the file name of the resulting .chm file. You +# can add a path in front of the file if the result should not be +# written to the html output directory. + +CHM_FILE = + +# If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can +# be used to specify the location (absolute path including file name) of +# the HTML help compiler (hhc.exe). If non-empty doxygen will try to run +# the HTML help compiler on the generated index.hhp. + +HHC_LOCATION = + +# If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag +# controls if a separate .chi index file is generated (YES) or that +# it should be included in the master .chm file (NO). + +GENERATE_CHI = NO + +# If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING +# is used to encode HtmlHelp index (hhk), content (hhc) and project file +# content. + +CHM_INDEX_ENCODING = + +# If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag +# controls whether a binary table of contents is generated (YES) or a +# normal table of contents (NO) in the .chm file. + +BINARY_TOC = NO + +# The TOC_EXPAND flag can be set to YES to add extra items for group members +# to the contents of the HTML help documentation and to the tree view. + +TOC_EXPAND = NO + +# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and QHP_VIRTUAL_FOLDER +# are set, an additional index file will be generated that can be used as input for +# Qt's qhelpgenerator to generate a Qt Compressed Help (.qch) of the generated +# HTML documentation. + +GENERATE_QHP = NO + +# If the QHG_LOCATION tag is specified, the QCH_FILE tag can +# be used to specify the file name of the resulting .qch file. +# The path specified is relative to the HTML output folder. + +QCH_FILE = + +# The QHP_NAMESPACE tag specifies the namespace to use when generating +# Qt Help Project output. For more information please see +# http://doc.trolltech.com/qthelpproject.html#namespace + +QHP_NAMESPACE = + +# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating +# Qt Help Project output. For more information please see +# http://doc.trolltech.com/qthelpproject.html#virtual-folders + +QHP_VIRTUAL_FOLDER = doc + +# If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to add. +# For more information please see +# http://doc.trolltech.com/qthelpproject.html#custom-filters + +QHP_CUST_FILTER_NAME = + +# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom filter to add.For more information please see +# Qt Help Project / Custom Filters. + +QHP_CUST_FILTER_ATTRS = + +# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this project's +# filter section matches. +# Qt Help Project / Filter Attributes. + +QHP_SECT_FILTER_ATTRS = + +# If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can +# be used to specify the location of Qt's qhelpgenerator. +# If non-empty doxygen will try to run qhelpgenerator on the generated +# .qhp file. + +QHG_LOCATION = + +# The DISABLE_INDEX tag can be used to turn on/off the condensed index at +# top of each HTML page. The value NO (the default) enables the index and +# the value YES disables it. + +DISABLE_INDEX = NO + +# This tag can be used to set the number of enum values (range [1..20]) +# that doxygen will group on one line in the generated HTML documentation. + +ENUM_VALUES_PER_LINE = 4 + +# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index +# structure should be generated to display hierarchical information. +# If the tag value is set to FRAME, a side panel will be generated +# containing a tree-like index structure (just like the one that +# is generated for HTML Help). For this to work a browser that supports +# JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+, +# Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are +# probably better off using the HTML help feature. Other possible values +# for this tag are: HIERARCHIES, which will generate the Groups, Directories, +# and Class Hierarchy pages using a tree view instead of an ordered list; +# ALL, which combines the behavior of FRAME and HIERARCHIES; and NONE, which +# disables this behavior completely. For backwards compatibility with previous +# releases of Doxygen, the values YES and NO are equivalent to FRAME and NONE +# respectively. + +GENERATE_TREEVIEW = NONE + +# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be +# used to set the initial width (in pixels) of the frame in which the tree +# is shown. + +TREEVIEW_WIDTH = 250 + +# Use this tag to change the font size of Latex formulas included +# as images in the HTML documentation. The default is 10. Note that +# when you change the font size after a successful doxygen run you need +# to manually remove any form_*.png images from the HTML output directory +# to force them to be regenerated. + +FORMULA_FONTSIZE = 10 + +#--------------------------------------------------------------------------- +# configuration options related to the LaTeX output +#--------------------------------------------------------------------------- + +# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will +# generate Latex output. + +GENERATE_LATEX = NO + +# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `latex' will be used as the default path. + +LATEX_OUTPUT = latex + +# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be +# invoked. If left blank `latex' will be used as the default command name. + +LATEX_CMD_NAME = latex + +# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to +# generate index for LaTeX. If left blank `makeindex' will be used as the +# default command name. + +MAKEINDEX_CMD_NAME = makeindex + +# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact +# LaTeX documents. This may be useful for small projects and may help to +# save some trees in general. + +COMPACT_LATEX = NO + +# The PAPER_TYPE tag can be used to set the paper type that is used +# by the printer. Possible values are: a4, a4wide, letter, legal and +# executive. If left blank a4wide will be used. + +PAPER_TYPE = a4wide + +# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX +# packages that should be included in the LaTeX output. + +EXTRA_PACKAGES = + +# The LATEX_HEADER tag can be used to specify a personal LaTeX header for +# the generated latex document. The header should contain everything until +# the first chapter. If it is left blank doxygen will generate a +# standard header. Notice: only use this tag if you know what you are doing! + +LATEX_HEADER = + +# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated +# is prepared for conversion to pdf (using ps2pdf). The pdf file will +# contain links (just like the HTML output) instead of page references +# This makes the output suitable for online browsing using a pdf viewer. + +PDF_HYPERLINKS = YES + +# If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of +# plain latex in the generated Makefile. Set this option to YES to get a +# higher quality PDF documentation. + +USE_PDFLATEX = YES + +# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode. +# command to the generated LaTeX files. This will instruct LaTeX to keep +# running if errors occur, instead of asking the user for help. +# This option is also used when generating formulas in HTML. + +LATEX_BATCHMODE = NO + +# If LATEX_HIDE_INDICES is set to YES then doxygen will not +# include the index chapters (such as File Index, Compound Index, etc.) +# in the output. + +LATEX_HIDE_INDICES = NO + +#--------------------------------------------------------------------------- +# configuration options related to the RTF output +#--------------------------------------------------------------------------- + +# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output +# The RTF output is optimized for Word 97 and may not look very pretty with +# other RTF readers or editors. + +GENERATE_RTF = NO + +# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `rtf' will be used as the default path. + +RTF_OUTPUT = rtf + +# If the COMPACT_RTF tag is set to YES Doxygen generates more compact +# RTF documents. This may be useful for small projects and may help to +# save some trees in general. + +COMPACT_RTF = NO + +# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated +# will contain hyperlink fields. The RTF file will +# contain links (just like the HTML output) instead of page references. +# This makes the output suitable for online browsing using WORD or other +# programs which support those fields. +# Note: wordpad (write) and others do not support links. + +RTF_HYPERLINKS = NO + +# Load stylesheet definitions from file. Syntax is similar to doxygen's +# config file, i.e. a series of assignments. You only have to provide +# replacements, missing definitions are set to their default value. + +RTF_STYLESHEET_FILE = + +# Set optional variables used in the generation of an rtf document. +# Syntax is similar to doxygen's config file. + +RTF_EXTENSIONS_FILE = + +#--------------------------------------------------------------------------- +# configuration options related to the man page output +#--------------------------------------------------------------------------- + +# If the GENERATE_MAN tag is set to YES (the default) Doxygen will +# generate man pages + +GENERATE_MAN = NO + +# The MAN_OUTPUT tag is used to specify where the man pages will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `man' will be used as the default path. + +MAN_OUTPUT = man + +# The MAN_EXTENSION tag determines the extension that is added to +# the generated man pages (default is the subroutine's section .3) + +MAN_EXTENSION = .3 + +# If the MAN_LINKS tag is set to YES and Doxygen generates man output, +# then it will generate one additional man file for each entity +# documented in the real man page(s). These additional files +# only source the real man page, but without them the man command +# would be unable to find the correct page. The default is NO. + +MAN_LINKS = NO + +#--------------------------------------------------------------------------- +# configuration options related to the XML output +#--------------------------------------------------------------------------- + +# If the GENERATE_XML tag is set to YES Doxygen will +# generate an XML file that captures the structure of +# the code including all documentation. + +GENERATE_XML = NO + +# The XML_OUTPUT tag is used to specify where the XML pages will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `xml' will be used as the default path. + +XML_OUTPUT = xml + +# The XML_SCHEMA tag can be used to specify an XML schema, +# which can be used by a validating XML parser to check the +# syntax of the XML files. + +XML_SCHEMA = + +# The XML_DTD tag can be used to specify an XML DTD, +# which can be used by a validating XML parser to check the +# syntax of the XML files. + +XML_DTD = + +# If the XML_PROGRAMLISTING tag is set to YES Doxygen will +# dump the program listings (including syntax highlighting +# and cross-referencing information) to the XML output. Note that +# enabling this will significantly increase the size of the XML output. + +XML_PROGRAMLISTING = YES + +#--------------------------------------------------------------------------- +# configuration options for the AutoGen Definitions output +#--------------------------------------------------------------------------- + +# If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will +# generate an AutoGen Definitions (see autogen.sf.net) file +# that captures the structure of the code including all +# documentation. Note that this feature is still experimental +# and incomplete at the moment. + +GENERATE_AUTOGEN_DEF = NO + +#--------------------------------------------------------------------------- +# configuration options related to the Perl module output +#--------------------------------------------------------------------------- + +# If the GENERATE_PERLMOD tag is set to YES Doxygen will +# generate a Perl module file that captures the structure of +# the code including all documentation. Note that this +# feature is still experimental and incomplete at the +# moment. + +GENERATE_PERLMOD = NO + +# If the PERLMOD_LATEX tag is set to YES Doxygen will generate +# the necessary Makefile rules, Perl scripts and LaTeX code to be able +# to generate PDF and DVI output from the Perl module output. + +PERLMOD_LATEX = NO + +# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be +# nicely formatted so it can be parsed by a human reader. +# This is useful +# if you want to understand what is going on. +# On the other hand, if this +# tag is set to NO the size of the Perl module output will be much smaller +# and Perl will parse it just the same. + +PERLMOD_PRETTY = YES + +# The names of the make variables in the generated doxyrules.make file +# are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. +# This is useful so different doxyrules.make files included by the same +# Makefile don't overwrite each other's variables. + +PERLMOD_MAKEVAR_PREFIX = + +#--------------------------------------------------------------------------- +# Configuration options related to the preprocessor +#--------------------------------------------------------------------------- + +# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will +# evaluate all C-preprocessor directives found in the sources and include +# files. + +ENABLE_PREPROCESSING = YES + +# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro +# names in the source code. If set to NO (the default) only conditional +# compilation will be performed. Macro expansion can be done in a controlled +# way by setting EXPAND_ONLY_PREDEF to YES. + +MACRO_EXPANSION = NO + +# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES +# then the macro expansion is limited to the macros specified with the +# PREDEFINED and EXPAND_AS_DEFINED tags. + +EXPAND_ONLY_PREDEF = NO + +# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files +# in the INCLUDE_PATH (see below) will be search if a #include is found. + +SEARCH_INCLUDES = YES + +# The INCLUDE_PATH tag can be used to specify one or more directories that +# contain include files that are not input files but should be processed by +# the preprocessor. + +INCLUDE_PATH = + +# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard +# patterns (like *.h and *.hpp) to filter out the header-files in the +# directories. If left blank, the patterns specified with FILE_PATTERNS will +# be used. + +INCLUDE_FILE_PATTERNS = + +# The PREDEFINED tag can be used to specify one or more macro names that +# are defined before the preprocessor is started (similar to the -D option of +# gcc). The argument of the tag is a list of macros of the form: name +# or name=definition (no spaces). If the definition and the = are +# omitted =1 is assumed. To prevent a macro definition from being +# undefined via #undef or recursively expanded use the := operator +# instead of the = operator. + +PREDEFINED = + +# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then +# this tag can be used to specify a list of macro names that should be expanded. +# The macro definition that is found in the sources will be used. +# Use the PREDEFINED tag if you want to use a different macro definition. + +EXPAND_AS_DEFINED = + +# If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then +# doxygen's preprocessor will remove all function-like macros that are alone +# on a line, have an all uppercase name, and do not end with a semicolon. Such +# function macros are typically used for boiler-plate code, and will confuse +# the parser if not removed. + +SKIP_FUNCTION_MACROS = YES + +#--------------------------------------------------------------------------- +# Configuration::additions related to external references +#--------------------------------------------------------------------------- + +# The TAGFILES option can be used to specify one or more tagfiles. +# Optionally an initial location of the external documentation +# can be added for each tagfile. The format of a tag file without +# this location is as follows: +# +# TAGFILES = file1 file2 ... +# Adding location for the tag files is done as follows: +# +# TAGFILES = file1=loc1 "file2 = loc2" ... +# where "loc1" and "loc2" can be relative or absolute paths or +# URLs. If a location is present for each tag, the installdox tool +# does not have to be run to correct the links. +# Note that each tag file must have a unique name +# (where the name does NOT include the path) +# If a tag file is not located in the directory in which doxygen +# is run, you must also specify the path to the tagfile here. + +TAGFILES = + +# When a file name is specified after GENERATE_TAGFILE, doxygen will create +# a tag file that is based on the input files it reads. + +GENERATE_TAGFILE = + +# If the ALLEXTERNALS tag is set to YES all external classes will be listed +# in the class index. If set to NO only the inherited external classes +# will be listed. + +ALLEXTERNALS = NO + +# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed +# in the modules index. If set to NO, only the current project's groups will +# be listed. + +EXTERNAL_GROUPS = YES + +# The PERL_PATH should be the absolute path and name of the perl script +# interpreter (i.e. the result of `which perl'). + +PERL_PATH = /usr/bin/perl + +#--------------------------------------------------------------------------- +# Configuration options related to the dot tool +#--------------------------------------------------------------------------- + +# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will +# generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base +# or super classes. Setting the tag to NO turns the diagrams off. Note that +# this option is superseded by the HAVE_DOT option below. This is only a +# fallback. It is recommended to install and use dot, since it yields more +# powerful graphs. + +CLASS_DIAGRAMS = YES + +# You can define message sequence charts within doxygen comments using the \msc +# command. Doxygen will then run the mscgen tool (see +# http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the +# documentation. The MSCGEN_PATH tag allows you to specify the directory where +# the mscgen tool resides. If left empty the tool is assumed to be found in the +# default search path. + +MSCGEN_PATH = + +# If set to YES, the inheritance and collaboration graphs will hide +# inheritance and usage relations if the target is undocumented +# or is not a class. + +HIDE_UNDOC_RELATIONS = YES + +# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is +# available from the path. This tool is part of Graphviz, a graph visualization +# toolkit from AT&T and Lucent Bell Labs. The other options in this section +# have no effect if this option is set to NO (the default) + +HAVE_DOT = NO + +# By default doxygen will write a font called FreeSans.ttf to the output +# directory and reference it in all dot files that doxygen generates. This +# font does not include all possible unicode characters however, so when you need +# these (or just want a differently looking font) you can specify the font name +# using DOT_FONTNAME. You need need to make sure dot is able to find the font, +# which can be done by putting it in a standard location or by setting the +# DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory +# containing the font. + +DOT_FONTNAME = FreeSans + +# The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs. +# The default size is 10pt. + +DOT_FONTSIZE = 10 + +# By default doxygen will tell dot to use the output directory to look for the +# FreeSans.ttf font (which doxygen will put there itself). If you specify a +# different font using DOT_FONTNAME you can set the path where dot +# can find it using this tag. + +DOT_FONTPATH = + +# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for each documented class showing the direct and +# indirect inheritance relations. Setting this tag to YES will force the +# the CLASS_DIAGRAMS tag to NO. + +CLASS_GRAPH = YES + +# If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for each documented class showing the direct and +# indirect implementation dependencies (inheritance, containment, and +# class references variables) of the class with other documented classes. + +COLLABORATION_GRAPH = YES + +# If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for groups, showing the direct groups dependencies + +GROUP_GRAPHS = YES + +# If the UML_LOOK tag is set to YES doxygen will generate inheritance and +# collaboration diagrams in a style similar to the OMG's Unified Modeling +# Language. + +UML_LOOK = NO + +# If set to YES, the inheritance and collaboration graphs will show the +# relations between templates and their instances. + +TEMPLATE_RELATIONS = NO + +# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT +# tags are set to YES then doxygen will generate a graph for each documented +# file showing the direct and indirect include dependencies of the file with +# other documented files. + +INCLUDE_GRAPH = YES + +# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and +# HAVE_DOT tags are set to YES then doxygen will generate a graph for each +# documented header file showing the documented files that directly or +# indirectly include this file. + +INCLUDED_BY_GRAPH = YES + +# If the CALL_GRAPH and HAVE_DOT options are set to YES then +# doxygen will generate a call dependency graph for every global function +# or class method. Note that enabling this option will significantly increase +# the time of a run. So in most cases it will be better to enable call graphs +# for selected functions only using the \callgraph command. + +CALL_GRAPH = NO + +# If the CALLER_GRAPH and HAVE_DOT tags are set to YES then +# doxygen will generate a caller dependency graph for every global function +# or class method. Note that enabling this option will significantly increase +# the time of a run. So in most cases it will be better to enable caller +# graphs for selected functions only using the \callergraph command. + +CALLER_GRAPH = NO + +# If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen +# will graphical hierarchy of all classes instead of a textual one. + +GRAPHICAL_HIERARCHY = YES + +# If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES +# then doxygen will show the dependencies a directory has on other directories +# in a graphical way. The dependency relations are determined by the #include +# relations between the files in the directories. + +DIRECTORY_GRAPH = YES + +# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images +# generated by dot. Possible values are png, jpg, or gif +# If left blank png will be used. + +DOT_IMAGE_FORMAT = png + +# The tag DOT_PATH can be used to specify the path where the dot tool can be +# found. If left blank, it is assumed the dot tool can be found in the path. + +DOT_PATH = + +# The DOTFILE_DIRS tag can be used to specify one or more directories that +# contain dot files that are included in the documentation (see the +# \dotfile command). + +DOTFILE_DIRS = + +# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of +# nodes that will be shown in the graph. If the number of nodes in a graph +# becomes larger than this value, doxygen will truncate the graph, which is +# visualized by representing a node as a red box. 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This is disabled by default, because dot on Windows does not +# seem to support this out of the box. Warning: Depending on the platform used, +# enabling this option may lead to badly anti-aliased labels on the edges of +# a graph (i.e. they become hard to read). + +DOT_TRANSPARENT = NO + +# Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output +# files in one run (i.e. multiple -o and -T options on the command line). This +# makes dot run faster, but since only newer versions of dot (>1.8.10) +# support this, this feature is disabled by default. + +DOT_MULTI_TARGETS = NO + +# If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will +# generate a legend page explaining the meaning of the various boxes and +# arrows in the dot generated graphs. + +GENERATE_LEGEND = YES + +# If the DOT_CLEANUP tag is set to YES (the default) Doxygen will +# remove the intermediate dot files that are used to generate +# the various graphs. + +DOT_CLEANUP = YES + +#--------------------------------------------------------------------------- +# Options related to the search engine +#--------------------------------------------------------------------------- + +# The SEARCHENGINE tag specifies whether or not a search engine should be +# used. If set to NO the values of all tags below this one will be ignored. + +SEARCHENGINE = NO Index: /issm/trunk/doc/index.html =================================================================== --- /issm/trunk/doc/index.html (revision 1) +++ /issm/trunk/doc/index.html (revision 1) @@ -0,0 +1,38 @@ + + +ISSM: ISSM Documentation + + + + + +
+

ISSM Documentation

+

+

1.0

You can find several documentations of the Ice Sheet System Model (ISSM) code:

+User Guide

+
    +
  • You can download a pdf documentation to get you started.
+

+Theory guide:

+
    +
  • You can download a theory guide here if you want to know more about the theory of ice sheet modeling and finite element.
+

+Developer guide:

+You have also a documentation for the Matlab file here

+

Authors:
Eric Larour, Helene Seroussi and Mathieu Morlighem.
+
+
Generated on Mon Mar 30 16:30:43 2009 for ISSM by  + +doxygen 1.5.8
+ + Index: /issm/trunk/doc/issmdoc.m =================================================================== --- /issm/trunk/doc/issmdoc.m (revision 1) +++ /issm/trunk/doc/issmdoc.m (revision 1) @@ -0,0 +1,18 @@ +%Quick documentation for ISSM + +%First get ISSM dir: +ISSM_DIR=issmdir; + +disp(sprintf('\n%s%s%s',' The following documentations are available in ',ISSM_DIR,'/doc/')); +disp(sprintf('%s',' userguide: how to use ISSM, quick tutorial')); +disp(sprintf('%s',' theoryguide: theory behind the ISSM models')); +disp(sprintf('%s\n',' developperguide: documented API and source code')); +disp(sprintf('%s',' Example: how to create a square ice shelf')); +disp(sprintf('%s',' go to ',ISSM_DIR,'/examples/SquareIceshelf')); +disp(sprintf('%s',' md=model; %creates a new empty model structure')); +disp(sprintf('%s',' md=mesh(md,''DomainOutline.exp'',50000); %creates a mesh of the domain outline with a resolution of 50000m')); +disp(sprintf('%s',' md=geography(md,''all'',''''); %defines the glacier system as an ice shelf (no island)')); +disp(sprintf('%s',' md=parameterize(md,''Square.par''); %fills all the other fields of the model')); +disp(sprintf('%s',' md=setelementstype(md,''macayeal'',''all''); %defines all elements as MacAyeal''s')); +disp(sprintf('%s',' md=solve(md,''diagnostic'',''ice''); %generate the velocity field of the ice shelf using the solver ICE')); +disp(sprintf('%s',' plotmodel(md,''data'',''vel''); %displays the velocity (type plotdoc for plotmodel help)')); Index: /issm/trunk/doc/mainpage.dox =================================================================== --- /issm/trunk/doc/mainpage.dox (revision 1) +++ /issm/trunk/doc/mainpage.dox (revision 1) @@ -0,0 +1,16 @@ +/*! +*@mainpage ISSM Documentation +* You can find several documentations of the Ice Sheet System Model (ISSM) code: +* +*\section user User Guide +*- You can download a pdf documentation to get you started. +* +*\section theory Theory guide: +*- You can download a theory guide here if you want to know more about the theory of ice sheet modeling and finite element. +* +*\section api Developer guide: +*You have also a documentation for the Matlab file here +* +*@authors Eric Larour, Helene Seroussi and Mathieu Morlighem. +*/ + Index: /issm/trunk/doc/theoryguide/Makefile =================================================================== --- /issm/trunk/doc/theoryguide/Makefile (revision 1) +++ /issm/trunk/doc/theoryguide/Makefile (revision 1) @@ -0,0 +1,40 @@ +#Makefile for finite element formlations used in ice + + +DEPENDENCIES= Algorithm.png \ + meshpenalty.png\ + bilanmass.png\ + Assembly.png\ + penalties1.png\ + accumulation.png \ + melting.png \ + friction_geometry.png \ + thermal_loop.png \ + geometry3D.png \ + schema4.png \ + triaelem.png \ + tetraelem.png\ + pentaelem.png\ + quadelem.png\ + segment.png\ + barycentric_tria.png \ + barycentric_penta.png \ + friction_kin.png\ + schema1.png \ + schema5.png \ + TpmpMb.png\ + MINI.png\ + penalized_vel_3.png\ + penalized_vel_2.png\ + theoryguide.tex + +all: theoryguide.pdf + +theoryguide.pdf: $(DEPENDENCIES) + + pdflatex theoryguide.tex + pdflatex theoryguide.tex + pdflatex theoryguide.tex + +clean: + rm -rf *.dvi *.ps *.pdf *.toc *.log *.aux *.out Index: /issm/trunk/doc/theoryguide/theoryguide.tex =================================================================== --- /issm/trunk/doc/theoryguide/theoryguide.tex (revision 1) +++ /issm/trunk/doc/theoryguide/theoryguide.tex (revision 1) @@ -0,0 +1,6840 @@ +%%% Debut du preambule %%% + +\documentclass[letterpaper]{report} % Classe du document +\usepackage[T1]{fontenc} % Encodage de sortie (l'encodage T1 convient mieux aux langues autres que l'Anglais) +\usepackage{aeguill,aecompl} % Fontes virtuelles (nuit aux recherches et aux copies de texte dans le document PDF) pour PDF: + % ameliore la qualite de la visualisation avec Acrobat Reader + +%\hypersetup{colorlinks=true,linkcolor=blue,citecolor=magenta} + + +\title{ISSM documentation} +\author{Larour, Morlighem, Seroussi, Khazendar} +\date{2008} + +\usepackage{graphicx} % Inclusion d'images +\usepackage{array, multirow} % Tableaux +\usepackage{amsmath} % Mode mathematique +\usepackage{amsfonts} % Polices mathematiques +\usepackage{amssymb} % Symboles mathematiques +\usepackage{makeidx} +\usepackage{float} %Pour faire [H] sur les float +\usepackage[left=3cm, right=3cm, + top=2cm, bottom=2cm]{geometry} + +\usepackage{fancyhdr} +\usepackage{subfig} +\usepackage{longtable} +\usepackage{cancel} + +\lhead{\leftmark{}} %en haut a gauche, titre de section +\rhead{\thepage} %en haut a droite, page +\lfoot{NASA - Jet Propulsion Laboratory} %en bas a gauche +\rfoot{\scriptsize{\today}} %en bas a droite +\cfoot{ISSM Documentation} %en bas, au milieu +\setcounter{tocdepth}{4} %pour afficher la table des matiere au niveau subsection +\setcounter{secnumdepth}{4} + + +\usepackage[plainpages=false]{hyperref} + +\hypersetup{% Links Options for the document% +colorlinks=true, +linkcolor=blue, +urlcolor=blue, +% anchorcolor=darkblue, +citecolor=blue, +plainpages=false, +%PDF Options% +pdftitle={Formulations}, +pdfauthor={Larour, Morlighem, Seroussi,Khazendar}, +pdfsubject={Numerical modelling of ice sheets}} +\newcommand*{\BigO}[1]{\mathcal{O}\left( #1\right) } %Big O landau notation + +\pagestyle{fancy} +\bibliographystyle{plain} + +%%% Fin du preambule %%% +\begin{document} +%%Page de titre + +\thispagestyle{empty} + +\vspace{10cm} +\begin{center} +\bf \LARGE Ice Sheet System Model 2008\\ Theory Guide +\end{center} + +\vspace{4cm} + +\begin{center} +Authors:\\ +\vspace{.5cm} +{\bf \large \'Eric Larour$^{1}$} \\ +\smallskip +{\bf \large Mathieu Morlighem$^{2,4}$} \\ +\smallskip +{\bf \large H\'el\`ene Seroussi$^{2,4}$} \\ +\smallskip +{\bf \large \'Eric Rignot$^{2,3}$} \\ +\vfill +%\vspace{4.5cm} +$^{1}$Division 35, Thermal and Cryogenics Section, \\ +Mechanical Division, MS 157-316. \\ +Jet Propulsion Laboratory, 4800 Oak Grove Drive, Pasadena, CA 91109.\\ +\vspace{.2cm} +$^{2}$Division 33, Radar Science and Enginnering Section, \\ +Communications, Tracking and Radar Division, MS 157-316. \\ +Jet Propulsion Laboratory, 4800 Oak Grove Drive, Pasadena, CA 91109.\\ +\vspace{.2cm} +$^{3}$University of California, Irvine\\ +Department of Earth System Science\\ +Croul Hall, Irvine, CA 92697-3100\\ +\vspace{.2cm} +$^{4}$Laboratoire de M\'ecanique des sols, Structures et mat\'eriaux (MSSMat)\\ +\'Ecole Centrale Paris, CNRS UMR 8579\\ +Grande Voie des Vignes, 92295 Châtenay-Malabry Cedex, FRANCE\\ + +\vspace{0.5cm} +\today +\end{center} + +\cleardoublepage + +\begin{center} +{\Large \bf Summary} +\end{center} +This manual explains ... + +\vspace{1cm} +Key-words : ICE, ice flow, finite elements, 2-D, 3-D, matlab + +\cleardoublepage + +%%Table of content +%%%%%%%%%%%%%%%%%%% +%\pagestyle{headings} %entete et pieds de pages par defaut + + +\tableofcontents + +\newpage + +%%Body +%%%%%%%%%%% + \chapter*{Introduction} +This document... +\\ +\\ +\\ +KEYWORD: Models, weak formulation, Galerkin, finite element, gauss quadrature,Full stokes, ice sheet numerical finite element model,... + +\newpage +\chapter{Physical basis} +This chapter describes the principles of glacier mechanics. We introduce the constitutive relation of ice: Glen's flow law, as well as some basic concepts such as conservation of mass and momentum balance. These equations are used to deduce the three models used in $ISSM$ (Ice Sheet System Model). In a second part, the boundary conditions are presented. The last part is dedicated to a thermodynamic model that was also implemented in $ISSM$. + +\section{Notations and geometry} + +We consider an ice sheet extending into the ocean. The floating part is an ice shelf. +Deformable subglacial till is present below the grounded ice. The geometry is described by the following scheme: +\\ +\begin{figure}[H] +\begin{center} +\includegraphics[width=11cm]{schema1.png} +\caption{Schematic cross section of the glacier} +\label{schema1} +\end{center} +\end{figure} +\vspace*{-0.4cm} +\noindent +The z axis is vertically pointing upward and the sea level is at $z=0$, the xy-plane is horizontal. We note: +\begin{itemize} + \item[--] $H (x,y)$ glacier thickness + \vspace*{-0.9mm} + \item[--] $s(x,y)$ glacier's upper surface z coordinate + \vspace*{-0.9mm} + \item[--] $b(x,y)$ glacier's lower surface z coordinate +\end{itemize} +\vspace*{0.4cm} +Regarding kinematic quantities, we adopt the following notations: +\begin{itemize} + \item[--] $\overrightarrow{v}(x,y,z)$ is the glacier velocity + \vspace*{-0.9mm} + \item[--] $u(x,y,z)$ velocity x-component + \vspace*{-0.9mm} + \item[--] $v(x,y,z)$ velocity y-component + \vspace*{-0.9mm} + \item[--] $w(x,y,z)$ velocity z-component + \vspace*{-0.9mm} + \item[--] $\varepsilon(x,y,z)$ strain tensor + \vspace*{-0.9mm} + \item[--] $\dot{\varepsilon}(x,y,z)$ strain rate tensor + \vspace*{-0.9mm} + \item[--] $\sigma (x,y,z)$ stress tensor +\end{itemize} + +\newpage +\section{Deformation Law} +\subsection{Flow law} + +The deformation of ice involves the deviatoric stress tensor because hydrostatic pressure does not contribute to ice deformation. It only depends on shear (Hooke, 2005 \cite{Hooke2005} p13 and Paterson,1994 \cite{Paterson1994}). The deviatoric stress is: + +\begin{equation} +\sigma '=\sigma-\frac{1}{3} Tr(\sigma)=\sigma + P \left[ I \right] +\label{deviatoric stress} +\end{equation} +\\ +where $\sigma$ is the stress tensor and $P$ is the hydrostatic pressure\footnote{$\displaystyle Tr(\sigma)=\sum_i \sigma_{ii}$ is the stress trace}.The +effective strain and the effective shear stress are defined as follows: + +\begin{equation} +\dot{\varepsilon_{e}}= \frac{1}{\sqrt{2}} \left( \sum_{i,j=1..3} +\dot{\varepsilon}_{ij}^{2}\right) ^{1/2} +\qquad \qquad +\sigma'_{e}= \frac{1}{\sqrt{2}} \left( \sum_{i,j=1..3} \sigma_{ij}'^{2}\right) ^{1/2} +\label{epsilone1} +\end{equation} +\\ +where $\dot{\varepsilon}$ is the strain rate tensor. The most common flow law is Glen's flow law, +based on John W. Glen's experiments (Glen, 1955 \cite{Glen1955}). He used the form: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ +\displaystyle \dot{\varepsilon_{e}}=\left( \frac{\sigma'_{e}}{B}\right) ^{n} \\ +\\ +\hline +\end{array} +\end{equation} +\\ +where $B$ is a viscosity parameter which increases as the ice becomes stiffer ($MPa.a^{\frac{1}{n}} $), $n$ is empirically determined(most studies have found that $ n\simeq 3 $, see Hooke, 2005 \cite{Hooke2005} p15 and Paterson, 1994 \cite{Paterson1994} p86) and is called flow law exponent. + +\subsection{Constitutive relation of ice} + +We consider that ice is an isotropic and incompressible material. This implies that the principal axes +of the deviatoric stress $ \sigma' $ and the strain rate tensor $ \dot{\varepsilon} $ +coincide. The ice that constitutes glaciers is not isotropic and incompressible; +but this approximation is a convenient starting point for calculations of glacier flow. If the principal axes of deviatoric stress and strain rate coincide, the flow law becomes (Hooke, 2005 \cite{Hooke2005}, p269): + +\begin{equation} +\dot{\varepsilon}= \frac{{\sigma'_{e}}^{n-1}}{B^n} \sigma ' +\end{equation} +\\ +Then, combining Glen's flow law to eliminate $\sigma_{e}$, we obtain: + +\begin{equation} +\dot{\varepsilon}= \frac{\dot{\varepsilon_{e}}^{\frac{n-1}{n}}}{B} \sigma ' +\end{equation} +\\ +Following MacAyeal (MacAyeal, 1989 \cite{Macayeal1989}), we define the viscosity $\mu$ as: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ +\displaystyle \mu= \frac{B}{2\left( \dot{\varepsilon_{e}}^{1-\frac{1}{n}}\right) }\\ +\\ +\hline +\end{array} +\label{visco} +\end{equation} +\\ +Then the constitutive relation for ice becomes: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ +\displaystyle \sigma'=2\mu\dot{\varepsilon}\\ +\\ +\hline +\end{array} +\label{constitutive relation} +\end{equation} + +\section{Local Conservation of Mass and Momentum} + +\subsection{Mass balance} +The most general equation of local mass balance includes a production term $\dot{M}$. With $\rho$ the density of ice, the equation is: + +\begin{equation} +\frac{\partial \rho}{\partial t} + div \left( \rho \overrightarrow{v}\right) = \dot{M} +\end{equation} +\\ +In a glacier, there is no production of mass locally (surface accumulation and basal melting are not involved in local mass balance, they are treated as boundary conditions). The ice is also treated as incompressible: $\rho$ is constant (Hooke, 2005 \cite{Hooke2005} p14). The previous equation +can be rewritten as follows: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ +div \left(\overrightarrow{v}\right) = 0\\ +\label{incompressibility} +\\ +\hline +\end{array} +\end{equation} + +\subsection{Momentum balance} +The fundamental equation of momentum conservation (with $\overrightarrow{g}$ the acceleration due to gravity): + +\begin{equation} +\underline{Div}\left( \sigma \right) + \rho \overrightarrow{g} = \rho\frac{d\overrightarrow{v}}{d t} +\end{equation} +\\ +For a glacier, the acceleration is small. Thus the acceleration term is negligible compared to the other terms: the ice is described by a quasi-static model (Paterson,1994 \cite{Paterson1994} p258). +If we use the deviatoric stress defined in (\ref{deviatoric stress}), the momentum balance becomes: + +\begin{equation} +\underline{Div}\left( \sigma ' \right) -\overrightarrow{grad}P+ \rho\overrightarrow{g} = 0 +\end{equation} +\\ +using the constitutive relation (\ref{constitutive relation}) gives: + +\begin{equation} + \left\{ \begin{array}{l} + 2 \underline{Div} \left(\mu\dot{\varepsilon}\right) -\overrightarrow{grad}P+ \rho\overrightarrow{g} = 0\\ +\\ + \displaystyle \mu= \frac{B}{2\left( \dot{\varepsilon_{e}}^{1-\frac{1}{n}}\right) } + \end{array} \right. +\end{equation} +\\ +The momentum balance can hence be described by three different sets of equations that are strictly equivalent to each other: + +\subsubsection*{Momentum balance in terms of stress} + +\begin{equation} +\begin{array}{| c c c|} +\hline +&&\\ & + \left\{ \begin{array}{l} +\displaystyle \frac{\partial{\sigma}_{xx}}{\partial x}+\frac{\partial {\sigma}_{xy}}{\partial y}+\frac{\partial {\sigma}_{xz}}{\partial z}=0\\ +\\ +\displaystyle \frac{\partial{\sigma}_{yx}}{\partial x}+\frac{\partial {\sigma}_{yy}}{\partial y}+\frac{\partial {\sigma}_{yz}}{\partial z}=0\\ +\\ +\displaystyle \frac{\partial{\sigma}_{zx}}{\partial x}+\frac{\partial {\sigma}_{zy}}{\partial y}+\frac{\partial {\sigma}_{zz}}{\partial z}- \rho g=0 + \end{array} \right. &\\ +&&\\ +\hline +\end{array} +\label{dynamics_stress} +\end{equation} + +\subsubsection*{Momentum balance in terms of deviatoric stress} + +\begin{equation} +\begin{array}{|c c c|} +\hline +&&\\& + \left\{ \begin{array}{l} +\displaystyle \frac{\partial{\sigma'}_{xx}}{\partial x}+\frac{\partial {\sigma'}_{xy}}{\partial y}+\frac{\partial {\sigma'}_{xz}}{\partial z}-\frac{\partial P}{\partial x}=0\\ +\\ +\displaystyle \frac{\partial{\sigma'}_{yx}}{\partial x}+\frac{\partial {\sigma'}_{yy}}{\partial y}+\frac{\partial {\sigma'}_{yz}}{\partial z}-\frac{\partial P}{\partial y}=0\\ +\\ +\displaystyle \frac{\partial{\sigma'}_{zx}}{\partial x}+\frac{\partial {\sigma'}_{zy}}{\partial y}+\frac{\partial {\sigma'}_{zz}}{\partial z}-\frac{\partial P}{\partial z}- \rho g=0 + \end{array} \right. & \\ +&&\\ +\hline +\end{array} +\label{dynamics_deviatoricstress} +\end{equation} + +\subsubsection*{Momentum balance in terms of strain rate} + +\begin{equation} +\begin{array}{|c c c|} +\hline +&&\\& + \left\{ \begin{array}{l} +\displaystyle 2\frac{\partial\mu\dot{\varepsilon}_{xx}}{\partial x}+2\frac{\partial \mu\dot{\varepsilon}_{xy}}{\partial y}+2\frac{\partial \mu\dot{\varepsilon}_{xz}}{\partial z}-\frac{\partial P}{\partial x}=0\\ +\\ +\displaystyle 2\frac{\partial\mu\dot{\varepsilon}_{yx}}{\partial x}+2\frac{\partial \mu\dot{\varepsilon}_{yy}}{\partial y}+2\frac{\partial \mu\dot{\varepsilon}_{yz}}{\partial z}-\frac{\partial P}{\partial y}=0\\ +\\ +\displaystyle 2\frac{\partial\mu\dot{\varepsilon}_{zx}}{\partial x}+2\frac{\partial \mu\dot{\varepsilon}_{zy}}{\partial y}+2\frac{\partial \mu\dot{\varepsilon}_{zz}}{\partial z}-\frac{\partial P}{\partial z} - \rho g=0\\ + + \end{array} \right. & \\ +&&\\ +\hline +\end{array} +\label{dynamics_strainrate} +\end{equation} + +\newpage +\section{Time evolution of ice thickness} + +The thickness of ice varies in time because of: (1) basal melting, (2) surface accumulation and (3) the flow of the glacier itself. +The mass balance of an ice column of section $dxdy$ and height $H$ between a time $t$ and $t+dt$ is: +\vspace*{-3mm} +\begin{figure}[H] +\begin{center} +\includegraphics[width=8cm]{bilanmass.png} +\caption{Mass balance of an ice column} +\label{bilan_mass2} +\end{center} +\end{figure} +\begin{multline} +m(t+dt)-m(t)=\underbrace{dy\int_{b(x)}^{s(x)}\rho u\left( x\right) dt\;dz + dx\int_{b(y)}^{s(y)}\rho v\left( y\right) dt\;dz}_{Input\quad mass} ++ \underbrace{\rho\dot{M}_s dxdydt}_{Accumulation}\\ +\underbrace{-dy\int_{b(x+dx)}^{s(x+dx)}\rho u\left( x+dx\right) dt\;dz - dx\int_{b(y+dy)}^{s(y+dy)}\rho v\left( y+dy\right) dt\;dz}_{Output\quad mass} + - \underbrace{\rho\dot{M}_b dxdydt}_{Melting} +\end{multline} +\\ +where $\dot{M}_s$ is the local accumulation-ablation function at the surface ($m.a^{-1}$ ice equivalent, positive when accumulation) and $\dot{M}_b$ is the local melting rate at the base of the glacier ($m.a^{-1}$ ice equivalent positive when melting).\\ +If one uses the relation of incompressibility: + +\begin{equation*} +\begin{array}{r c l} +\displaystyle \dfrac{m(t+dt)-m(t)}{\rho dx dy dt} = \dfrac{\partial H}{\partial t} & = & +\displaystyle -\dfrac{1}{dx}\left( \int_{b(x+dx)}^{s(x+dx)}u\left( x+dx\right) dz -\int_{b(x)}^{s(x)} u\left( x\right) dz\right) \\ +\\ +&& +\displaystyle -\dfrac{1}{dy}\left(\int_{b(y+dy)}^{s(y+dy)}v\left( y+dy\right) dz-\int_{b(y)}^{s(y)} v\left( y\right) dz \right) + + \dot{M}_s - \dot{M}_b \\ + \\ +\end{array} +\end{equation*} +We now introduce the depth-averaged velocity $\quad \displaystyle H\overline{u}=\int_b^s udz\quad$ and $\quad \displaystyle H\overline{v}=\int_b^s vdz$, and obtain: +\vspace*{3mm} +\begin{equation} +\dfrac{\partial H}{\partial t}=-\dfrac{1}{dx}\left( \left( H\overline{u}\right) \left( x+dx\right)-\left( H\overline{u}\right)\left( x\right)\right) \\ +-\dfrac{1}{dy}\left(\left( H\overline{v}\right)\left( y+dy\right)-\left( H\overline{v}\right)\left( y\right)\right) + + \dot{M}_s - \dot{M}_b +\end{equation} +\\ +The evolution of ice thickness is then written as : + +\begin{equation} +\begin{array}{|c|} +\hline +\\ +\displaystyle \dfrac{\partial H}{\partial t} = - div \left( H +\left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] +\right)+ \dot{M}_s - \dot{M}_b\\ +\\ +\hline +\end{array} +\label{prognosticequation} +\end{equation} +\newpage + +\section{Boundary Conditions} + +All the equations governing ice flow were described in the previous section. The mass conservation, the momentum balance and the constitutive relation of ice give a set of equations that describes completely the ice sheet system dynamics. But one needs boundary conditions to constrain these equations. There are many boundary conditions depending on the interface: ice/atmosphere boundary (air pressure), ice/ocean boundary (water pressure) and ice till boundary (friction). All these boundary conditions are described in this section. + +\subsection{Ice/Atmosphere boundary} +The upper surface of the glacier can be viewed as a free surface (since the atmospheric pressure $P_0$ is negligible), the boundary condition is hence: + +\begin{equation} +\sigma \overrightarrow{n} = \sigma' \overrightarrow{n} - P\overrightarrow{n} = P_0\overrightarrow{n}\simeq \overrightarrow{0} +\label{iceatm} +\end{equation} +\\ +The upper surface of the glacier has the following equation : $ z-s \left( x,y,t\right)=0 $. +The unit normal vector pointing outward from the glacier $\overrightarrow{n}$ is the gradient of the previous equation: + +\begin{equation} + \displaystyle +\overrightarrow{n}= \frac{1}{ \left( \displaystyle \left( \frac{\partial s}{\partial x} \right)^2 + \left( \frac{\partial s}{\partial y} \right)^2+1 \right)^{1/2} } +\left( \begin{array}{c} +\displaystyle -\frac{\partial s}{\partial x}\\ +\\ +\displaystyle -\frac{\partial s}{\partial y}\\ +\\ + 1 + \end{array} \right) +\end{equation} + + + \subsection{Ice front boundary} +Water applies a pressure on the ice front equal to $P_w= -\rho_w g z$: +\begin{figure}[H] +\begin{center} +\includegraphics[width=13cm]{schema4.png} +\caption{Water pressure on the front of an ice shelf} +\label{schema4} +\end{center} +\end{figure} +The boundary condition is thus: + +\begin{equation} +\label{icefrontBC} +\sigma \overrightarrow{n} = \sigma' \overrightarrow{n} - P\overrightarrow{n} = -P_w\overrightarrow{n} +\end{equation} + + +\newpage + +\subsection{Ice/Water boundary} +\label{dirichletvsneumann} +The exact Ice/water boundary condition is a Neumann condition\footnote{A Neumann boundary condition specifies the values that the derivative of a solution is to take on the boundary of the domain}. Unfortunately, if one uses the incompressibility equation to deduce the vertical velocity (e.g. Pattyn), a Dirichlet boundary condition\footnote{A Dirichlet boundary condition specifies the values a solution needs to take on the boundary of the domain} is required. The only way to provide a Dirichlet boundary condition is to assume hydrostatic equilibrium. This gives an expression of the basal vertical velocity. + \subsubsection{Neumann boundary condition} + +The lower surface of the ice shelf in contact with water is subject to the pressure of the water $P_w=-\rho_w g b(x,y)$ where $\rho_w$ is the water density and $b(x,y)$ the glacier base: + +\begin{equation} +\sigma \overrightarrow{n} = \sigma' \overrightarrow{n} - P\left[ I \right] \overrightarrow{n} = -P_w\overrightarrow{n} +\end{equation} +\\ +%The pressure of the ice at the base of the glacier is $P_i=\rho_i g H(x,y)$ where $\rho_i$ is the ice density and $H(x,y)$ is the ice thickness at this point. So we can write the boundary condition as: +% +%\begin{equation} +%\sigma \overrightarrow{n} = \sigma' \overrightarrow{n} - \rho_i g H(x,y) \overrightarrow{n} = \rho_w g b(x,y) \overrightarrow{n} +%\end{equation} +%\\ +When there is a hydrostatic equilibrium, the water and ice pressure are equal, the boundary condition becomes: + +\begin{equation} + \sigma' \overrightarrow{n} = \overrightarrow{0} +\end{equation} +\\ +The lower surface of the ice shelf verifies: $ z-b \left( x,y,t\right)=0 $. The unit normal vector pointing outward $\overrightarrow{n}$ is the opposite of the gradient of the previous equation: +\begin{equation} +\overrightarrow{n}= \frac{1}{\left( \displaystyle \left( \frac{\partial b}{\partial x} \right)^2 + \left( \frac{\partial b}{\partial y} \right)^2+1 \right)^{1/2}} +\left( \begin{array}{c} +\displaystyle \frac{\partial b}{\partial x}\\ +\\ +\displaystyle \frac{\partial b}{\partial y}\\ +\\ + -1 +\end{array} \right) +\end{equation} + \subsubsection{Dirichlet boundary condition assuming hydrostatic equilibrium} +Using the Lagrangian derivative, the vertical basal velocity is: + +\begin{equation} +w_b=\frac{d b}{d t}=\frac{\partial b}{\partial t}+ u_b \frac{\partial b}{\partial x}+v_b \frac{\partial b}{\partial y} +\label{initialwb} +\end{equation} +\\ +The ice shelf lies on sea water. We do not have any kinematic information if we do not make any assumption. We suppose as a first order approximation that there is a hydrostatic equilibrium. This imposes: + +\begin{equation} +\rho_i H = - \rho_w b +\end{equation} +\\ +where $H$ is the ice thickness and $b$ the vertical position of the bed $(b<0)$. If one differentiates this equation, given that $\rho_i$ and $\rho_w$ are constant, one finds : + +\begin{equation} +\frac{\partial b }{\partial t } = - \frac{\rho_i }{\rho_w } \frac{\partial H}{\partial t} +\end{equation} +\\ +The mass balance of an ice column gives the local ice thickness evolution: + +\begin{equation} +\dfrac{\partial H}{\partial t} = - div \left( H +\left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] +\right)+ \dot{M}_s - \dot{M}_b\\ +\label{prognosticequation} +\end{equation} +\\ +We then use the equation (\ref{prognosticequation}) to evaluate the evolution of the ice thickness with time. With no accumulation and melting, the basal vertical velocity (\ref{initialwb}) is: + +\begin{equation} +w_b = u_b \frac{\partial b}{\partial x}+v_b \frac{\partial b}{\partial y} - \frac{\rho_i }{\rho_w } \left( - div \left( H \bar{u} \right) \right) +\end{equation} +\\ +Now let us consider the influence of accumulation and melting. If an accumulation of thickness $h$ appears on an ice shelf in hydrostatic equilibrium, it will sink by a height equal to $ \rho_i /\rho_w h$: +\begin{figure}[H] +\begin{center} +\includegraphics[width=12cm]{accumulation.png} +\caption{Evolution of an ice shelf subjected to accumulation} +\label{accumulation} +\end{center} +Same thing for melting: if a thickness $h$ melts at the ice shelf base in hydrostatic equilibrium, it will sink by a height equal to $( 1-\rho_i /\rho_w ) h$: +\vspace*{-5mm} +\end{figure} +\begin{figure}[H] +\begin{center} +\includegraphics[width=12cm]{melting.png} +\caption{Evolution of an ice shelf subjected to melting} +\label{melting} +\end{center} +\end{figure} +\vspace*{-3mm} +\noindent One uses the derivative of the previous equations with respect to time. If there is accumulation at the ice surface, the ice will sink into water with a velocity equal to: + +\begin{equation} +w_b=- \frac{\rho_i }{\rho_w } \dot{M_a} +\end{equation} +\\ +If ice melts at the bottom, the ice will sink with a velocity: + +\begin{equation} +w_b=-\left( 1-\frac{\rho_i }{\rho_w } \right) \dot{M_b} +\end{equation} +Eventually, the basal vertical velocity at ice/water interface is: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ \displaystyle +w_b = u_b \frac{\partial b}{\partial x}+v_b \frac{\partial b}{\partial y} - \frac{\rho_i }{\rho_w } \left( - div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right) \right) - \frac{\rho_i }{\rho_w } \dot{M_a} -\left(1- \frac{\rho_i }{\rho_w }\right) \dot{M_b}\\ +\\ +\hline +\end{array} +\label{basalvelocity} +\end{equation} +\newpage + + \subsection{Ice/Till interface} + The Ice/Till interface is constrained by two boundary conditions. The first one is a Neumann boundary condition describing basal drag (tangent to the interface) and the other one is a Dirichlet boundary condition constraining the vertical velocity. + \subsubsection{Dynamic boundary condition} + \label{frictionlawchapter} +The basal friction given by Paterson\cite{Paterson1994} (p151) is: + +\begin{equation} +\Vert \overrightarrow{u_b}\Vert = K N_{eff}^{-q} \Vert \overrightarrow{\tau_b} \Vert^p +\end{equation} +\begin{itemize} +\item[--] $\overrightarrow{u_b}$ is the velocity component, parallel to the bedrock surface $z=b(x,y)$ ($\overrightarrow{v}=\overrightarrow{u_b}+\left(\overrightarrow{v}.\overrightarrow{n} \right) \overrightarrow{n}$) +\item[--] $N_{eff}=g ( \rho H(x,y) + \rho_w b(x,y))$ is the effective pressure at the base +\item[--] $\overrightarrow{\tau_b}$ is the friction stress component, parallel to the bedrock surface ($\sigma\overrightarrow{n}=\overrightarrow{\tau_b}+\left( \sigma\left( \overrightarrow{n}\right).\overrightarrow{n}\right) \overrightarrow{n}$) +\item[--] $K$, $q$ and $p$ are constants +\end{itemize} +\vspace*{-0.3cm} +\begin{figure}[H] +\begin{center} +\includegraphics[width=8cm]{friction_geometry.png} +\caption{Ice/Till interface geometry} +\label{friction_geometry} +\end{center} +\end{figure} +\vspace*{-0.4cm} +This friction law may be written in vector form: + +\begin{equation} +\overrightarrow{\tau_b} \quad = \quad -K^2 N_{eff}^r \|\overrightarrow{v} \|^{s-1}\overrightarrow{u_b} \quad \stackrel{def}{=} \quad -\alpha^2 \overrightarrow{u_b} +\end{equation} +\\ +with $r=q/p$ and $s=1/p$. We use $K^2$ to be sure that this quantity is positive (ie. stress opposes the motion). +The unit normal vector $\overrightarrow{n}$ is: +\begin{equation} +\overrightarrow{n}= \frac{1}{\left( \displaystyle \left( \frac{\partial b}{\partial x} \right)^2 + \left( \frac{\partial z_b}{\partial y} \right)^2+1 \right)^{1/2}} +\left( \begin{array}{c} +\displaystyle -\frac{\partial b}{\partial x}\\ +\\ +\displaystyle -\frac{\partial b}{\partial y}\\ +\\ ++1 +\end{array} \right)= +\left( \begin{array}{c} +n_x\\ +\\ +n_y\\ +\\ +n_z +\end{array} \right) +\end{equation} +\\ +Several approximations can be made depending on the slope. They are despcribed in section \ref{Friction simplifications}. +\newpage + + \subsubsection{Kinematic boundary condition} +There is also a kinematic boundary condition which constraints the vertical component of the glacier velocity $w_b$ at its base. The following scheme (Fig.\ref{friction_kin}) represents a point $M$ on the lower surface of the glacier at a time $t$ and $t+dt$ in the velocity plane (plane $(\overrightarrow{v}, \overrightarrow{e_z})$). The accumulation/ablation is not represented. +\begin{figure}[H] +\begin{center} +\includegraphics[width=13cm]{friction_kin.png} +\caption{vertical displacement of the glacier base} +\label{friction_kin} +\end{center} +\end{figure} +\vspace{-3mm} \noindent +The vertical displacement of $M$ is due to: +\begin{itemize} +\item[--] The bedrock motion (isostatic adjustment): $b(t+dt)-b(t)$ +\item[--] The velocity of the glacier (the glacier is sliding and $M$ follows the bedrock geometry) +\end{itemize} +Therefore we have the following equation: + +\begin{equation} +z_M(t+dt)-z_M(t)=w_M dt = \left(u \frac{\partial b}{\partial x}+v \frac{\partial b}{\partial y}\right)dt+b(t+dt)-b(t) +\end{equation} +\\ +And then one must add the melting rate $\dot{M}_b$ at the base: + +\begin{equation} +z_M(t+dt)-z_M(t)=w_Mdt = \left(u_b \frac{\partial b}{\partial x}+v_b \frac{\partial b}{\partial y}\right)dt+b(t+dt)-b(t)-\dot{M}_b dt +\end{equation} +\\ +That gives us a constraint\footnote{usually the term $\displaystyle \frac{\partial b}{\partial t}$ is ignored} for the vertical component of the glacier velocity at its base\footnote{The expression of $w_b$ can also be found using the same approach as the ice/water boundary condition. The equation (\ref{initialwb}) is still true without melting or accumulation. Since ice is grounded, the accumulation $\dot{M}_s$ has no effect on $w_b$, whereas basal melting leads to a thinning of the ice sheet at a velocity equal to $ \displaystyle -\dot{M}_b$. If one adds this velocity to equation (\ref{initialwb}), one obtains the exact same equation as demonstrated here} $w_b$: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ +\displaystyle +w_b =\frac{\partial b}{\partial t}+ u_b \frac{\partial b}{\partial x}+v_b \frac{\partial b}{\partial y}-\dot{M}_b \\ +\\ +\hline +\end{array} +\end{equation} + +\newpage + + + +\subsection{Friction simplifications} +\label{Friction simplifications} + +\subsubsection{Development of the boundary condition} + +We have the following equations: + +\begin{equation} +\label{eq1} +\overrightarrow{\tau_b}=-\alpha^2 u_b= -\alpha^2 \left( \overrightarrow{u}-\left(\overrightarrow{u}.\overrightarrow{n}\right)\overrightarrow{n} \right) +=-\alpha^2 \left( +\begin{array}{c} +u\left( 1-{n_x}^2\right)-v n_x n_y -w n_x n_z\\ +\\ +-u n_x n_y +v\left( 1-{n_y}^2\right) -w n_y n_z\\ +\\ +-u n_x n_z-v n_y n_z +w\left( 1-{n_z}^2\right) +\end{array}\right) +\end{equation} +\\ +Finally, the exact boundary condition: + +\begin{equation} +\overrightarrow{F}=\sigma \overrightarrow{n}=\overrightarrow{\tau_b} + \sigma_{nn} \overrightarrow{n} += \left( +\begin{array}{c} +-\alpha^2 u\left( 1-{n_x}^2\right)+\alpha^2 v n_x n_y +\alpha^2 w n_x n_z+\sigma_{nn}n_x\\ +\\ +\alpha^2 u n_x n_y -\alpha^2 v\left( 1-{n_y}^2\right) +\alpha^2 w n_y n_z+\sigma_{nn}n_y\\ +\\ +\alpha^2 u n_x n_z +\alpha^2 v n_y n_z -\alpha^2 w\left( 1-{n_z}^2\right)+\sigma_{nn}n_z +\end{array} +\right) +\end{equation} +\\ +with: + +\begin{equation} +\sigma_{nn} \stackrel{def}{=} +\sigma \overrightarrow{n} . \overrightarrow{n} = \sigma_{xx}{n_x}^2 + \sigma_{yy}{n_y}^2 + \sigma_{zz}{n_z}^2 ++ 2 \sigma_{xy}n_x n_y + 2 \sigma_{xz}n_z n_x + 2 \sigma_{yz}n_z n_y\\ +\end{equation} + +\subsubsection{Zero order} +We can use a development of near zero order in $n_x$ and $n_y$ condering that the other terms have roughly the same order of magnitude\footnote{An adimensionnalization study not detailed here shows that the results of the following developments are consistent}. We consider that the normal vector is such as $n_x=n_y=0$ and $n_z=-1$. So we have $\sigma_{nn}=\sigma_{zz}+\mathcal{O}(n_x,n_y)$\\ +\\ +So the previous force becomes: + + +\begin{equation} +\label{friction0} +\overrightarrow{F} += \left( +\begin{array}{c} +-\alpha^2 u+\mathcal{O}(n_x,n_y)\\ +\\ +-\alpha^2 v+\mathcal{O}(n_x,n_y)\\ +\\ +\sigma_{zz}+\mathcal{O}(n_x,n_y) +\end{array} +\right) +\end{equation} + +\subsubsection{First order} +This relation doesn't consider the slope of the ice sheet base. That's why we will now use a first order development of the boundary condition to consider this slope. We neglect the terms composed with a product of $n_x$ or $n_y$. This imposes: +\begin{equation} +\begin{array}{c c l} +{n_z}^2 & = & 1-{n_x}^2-{n_y}^2 = 1+ \mathcal{O}(n_x^2,n_y^2)\\ +\\ +\sigma_{nn} & = & \sigma_{zz} + 2 \sigma_{xz}n_z n_x + 2 \sigma_{yz}n_z n_y+ \mathcal{O}(n_x^2,n_y^2) +\end{array} +\end{equation} +\\ +The boundary condition becomes: + +\begin{equation} +\label{friction1} +\overrightarrow{F} += \left( +\begin{array}{c} +-\alpha^2 u +\alpha^2 w n_x n_z+\sigma_{zz}n_x+\mathcal{O}(n_x^2,n_y^2)\\ +\\ +-\alpha^2 v +\alpha^2 w n_y n_z+\sigma_{zz}n_y+\mathcal{O}(n_x^2,n_y^2)\\ +\\ +\alpha^2 u n_x n_z+\alpha^2 v n_y n_z+\sigma_{zz}n_z + 2 \sigma_{xz}n_x + 2 \sigma_{yz} n_y+\mathcal{O}(n_x^2,n_y^2) +\end{array} +\right) +\end{equation} + +\newpage +\section{Simplified ice flow models} +\label{models} +This section presents the three ice flow models that are implemented in $ISSM$, from the most complex to the simplest. They all use the set of equations described in the first part of this chapter (mass balance, momentum equilibrium and constitutive relation) but have different levels of assumptions to simplify this initial set of equations. The idea is that the simpler, the faster in terms of computational time, but the less precise in terms of physics. + +\subsection{Full Stokes Model} + +The full Stokes model consists in resolving equations (\ref{dynamics_strainrate}) without approximation. It is a 3d incompressible ice flow model. The pressure $P$ becomes a variable like the velocity $(u, v,w)$. The additional fourth equation comes from incompressibility (\ref{incompressibility}). The equations are: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ + \left\{ \begin{array}{l} +\displaystyle \frac{\partial}{\partial x} \left( 2 \mu \frac{\partial u}{\partial x} \right) ++\frac{\partial}{\partial y} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial u}{\partial z} +\mu \frac{\partial w}{\partial x} \right) +-\frac{\partial P}{\partial x}=0\\ +\\ +\displaystyle \frac{\partial}{\partial x} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial y} \left( 2 \mu \frac{\partial v}{\partial y} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial v}{\partial z} +\mu \frac{\partial w}{\partial y} \right) +-\frac{\partial P}{\partial y}=0\\ +\\ +\displaystyle \frac{\partial}{\partial x} \left( \mu \frac{\partial u}{\partial z} +\mu \frac{\partial w}{\partial x} \right) ++\frac{\partial}{\partial y} \left( \mu \frac{\partial v}{\partial z} +\mu \frac{\partial w}{\partial y} \right) ++\frac{\partial}{\partial z} \left( 2 \mu \frac{\partial w}{\partial z} \right) +-\frac{\partial P}{\partial z} - \rho g=0\\ + \end{array} \right. + \\ + \\ +\displaystyle \frac{\partial u}{\partial x}+\frac{\partial v}{\partial y}+\frac{\partial w}{\partial z}=0 +\\ +\\ +\hline +\end{array} +\label{full-stokes} +\end{equation} + + +\subsection{Pattyn's Higher-order 3d Model} + +Pattyn's model is described in Pattyn's 2003 paper \emph{A new three-dimensional higher-order thermomechanical ice sheet model} \cite{Pattyn2003}. +It is a 3d model in which the vertical velocity is deduced from the horizontal components of velocity. +The two main assumptions of this model are (1) the horizontal gradients of the vertical velocity are small compared to the vertical gradient of the horizontal velocity, and (2) the hydrostatic approximation in the vertical. This translates to: + +\begin{itemize} +\item $\dfrac{\partial w}{\partial x}\ll \dfrac{\partial u}{\partial z}$ +\item $\dfrac{\partial w}{\partial y}\ll \dfrac{\partial v}{\partial z}$ +\item $\dfrac{\partial \sigma_{xz}}{\partial x} \ll \dfrac{\partial \sigma_{zz}}{\partial z}$ +\item $\dfrac{\partial \sigma_{yz}}{\partial y} \ll \dfrac{\partial \sigma_{zz}}{\partial z}$ +\\ +\end{itemize} +With the second assumption, the third equation of (\ref{full-stokes}) is reduced to: + +\begin{equation} +\frac{\partial}{\partial z} \left( 2 \mu \frac{\partial w}{\partial z} \right)-\frac{\partial P}{\partial z} - \rho g=0 +\end{equation} +\\ +If we integrate this equation from $z$ to the surface $s$, we obtain: + +\begin{equation} +P(s)-P(z)=2 \left. \mu \frac{\partial w}{\partial z}\right|_s-2 \left. \mu \frac{\partial w}{\partial z}\right|_z -\rho g \left( s-z\right) +\end{equation} +\\ +The boundary conditions at the ice/atmosphere interface (\ref{iceatm}) impose: + +\begin{equation} +\sigma_{zz}(s)= 2 \left. \mu \frac{\partial w}{\partial z}\right|_s-P(s)\simeq 0 +\end{equation} +\\ +Finally the pressure is: + +\begin{equation} +P(z)=2 \mu \frac{\partial w}{\partial z}+\rho g \left( s-z\right) +\end{equation} +\\ +With this approximation, full Stokes equations (\ref{full-stokes}) become: + +\begin{equation} +\begin{array}{c} + \left\{ \begin{array}{l} +\displaystyle \frac{\partial}{\partial x} \left( 2 \mu \frac{\partial u}{\partial x} \right) ++\frac{\partial}{\partial y} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial u}{\partial z} -\mu \frac{\partial w}{\partial x} \right) += \rho g \dfrac{\partial s}{\partial x}\\ +\\ +\displaystyle \frac{\partial}{\partial x} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial y} \left( 2 \mu \frac{\partial v}{\partial y} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial v}{\partial z} -\mu \frac{\partial w}{\partial y} \right) += \rho g \dfrac{\partial s}{\partial y}\\ +\\ +\displaystyle P(z)=2 \mu \frac{\partial w}{\partial z}+\rho g \left( s-z\right)\\ + \end{array} \right. + \\ + \\ +\displaystyle \frac{\partial u}{\partial x}+\frac{\partial v}{\partial y}+\frac{\partial w}{\partial z}=0 +\end{array} +\end{equation} +\\ +The second assumption simplifies the first two equations: + +\begin{equation} +\begin{array}{c} + \left\{ \begin{array}{l} +\displaystyle \frac{\partial}{\partial x} \left( 2 \mu \frac{\partial u}{\partial x} \right) ++\frac{\partial}{\partial y} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial u}{\partial z}\right) += \rho g \dfrac{\partial s}{\partial x}\\ +\\ +\displaystyle \frac{\partial}{\partial x} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial y} \left( 2 \mu \frac{\partial v}{\partial y} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial v}{\partial z} \right) += \rho g \dfrac{\partial s}{\partial y}\\ +\\ +\displaystyle P(z)=2 \mu \frac{\partial w}{\partial z}+\rho g \left( s-z\right)\\ + \end{array} \right. + \\ + \\ +\displaystyle \frac{\partial u}{\partial x}+\frac{\partial v}{\partial y}+\frac{\partial w}{\partial z}=0 +\end{array} +\end{equation} +\\ +The vertical component of the velocity is deduced from the incompressibility equation\footnote{For ice shelves, we will assume hydrostatic equilibrium so that we can use a Dirichlet boundary condition at the ice shelf base for the vertical velocity computation (See section \ref{dirichletvsneumann})} that is integrated from $b$ to $z$. The equations of Pattyn's model become : + +\begin{equation} +\begin{array}{|c|} +\hline +\\ + \left\{ \begin{array}{l} +\dfrac{\partial }{\partial x} \left(4 \mu \dfrac{\partial u}{\partial x} + 2 \mu \dfrac{\partial v}{\partial y} \right)+ \dfrac{\partial }{\partial y} \left(\mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right) + \dfrac{\partial }{\partial z}\left( \mu \dfrac{\partial u}{\partial z}\right)= \rho g \dfrac{\partial s}{\partial x}\\ +\\ +\dfrac{\partial }{\partial x} \left( \mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right)+ \dfrac{\partial }{\partial y} \left(4 \mu \dfrac{\partial v}{\partial y} + 2 \mu \dfrac{\partial u}{\partial x} \right) + \dfrac{\partial }{\partial z}\left( \mu \dfrac{\partial v}{\partial z}\right)= \rho g \dfrac{\partial s}{\partial y}\\ +\\ +\displaystyle w\left( x,y,z\right)= w_b\left( x,y,z\right) - \int_{b(x,y)}^{z} \dfrac{\partial u}{\partial x} + \dfrac{\partial v}{\partial y} dz' + \end{array} \right. +\\ +\\ +\hline +\end{array} +\label{Pattyn equations} +\end{equation} +\newpage +\subsection{MacAyeal's Shelfy-stream 2d model} +\label{MAsection} +MacAyeal's model is described in Douglas MacAyeal's 1989 paper \emph{Large-scale Ice Flow Over a Viscous Basal Sediment} \cite{Macayeal1989}. +It is a 2d model, the horizontal components of the velocity are vertically integrated. +The main assumption is that the basal drag associated with deforming basal sediment does not induce significant vertical +gradients of the horizontal velocity. This drove him to make the following assumptions: + +\begin{itemize} +\item $\displaystyle \dfrac{\partial u}{\partial z}=0$ +\item $\displaystyle \dfrac{\partial v}{\partial z}=0$ +\item $\dot{\varepsilon}_{xz}=0$ +\item $\dot{\varepsilon}_{yz}=0$ +\item bedrock slope assumed to be negligible +\end{itemize} + +\noindent These assumptions are stronger than Pattyn's. Therefore, we can use Pattyn's higher order model equations (\ref{Pattyn equations}) as a starting point. If we use the first two assumptions, the first equations of Pattyn's model become: + +\begin{equation} + \left\{ \begin{array}{l} +\displaystyle \dfrac{\partial }{\partial x} \left(4 \mu \dfrac{\partial u}{\partial x} + 2 \mu \dfrac{\partial v}{\partial y} \right)+ \dfrac{\partial }{\partial y} \left(\mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right) = \rho g \dfrac{\partial s}{\partial x}\\ +\\ +\displaystyle\dfrac{\partial }{\partial x} \left( \mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right)+ \dfrac{\partial }{\partial y} \left(4 \mu \dfrac{\partial v}{\partial y} + 2 \mu \dfrac{\partial u}{\partial x} \right) = \rho g \dfrac{\partial s}{\partial y}\\ + \end{array} \right. +\end{equation} +\\ +One can integrate these equations from the bed $b(x,y)$ to the surface $s(x,y)$: + +\begin{equation} + \left\{ \begin{array}{l} +\displaystyle \int_{b(x,y)}^{s(x,y)}\left(\dfrac{\partial }{\partial x} \left(4 \mu \dfrac{\partial u}{\partial x} + 2 \mu \dfrac{\partial v}{\partial y} \right)+ \dfrac{\partial }{\partial y} \left(\mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right) + \dfrac{\partial }{\partial z}\left( \mu \dfrac{\partial u}{\partial z}\right)\right) dz= \rho g H \dfrac{\partial s}{\partial x}\\ +\\ +\displaystyle \int_{b(x,y)}^{s(x,y)}\left(\dfrac{\partial }{\partial x} \left( \mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right)+ \dfrac{\partial }{\partial y} \left(4 \mu \dfrac{\partial v}{\partial y} + 2 \mu \dfrac{\partial u}{\partial x} \right) + \dfrac{\partial }{\partial z}\left( \mu \dfrac{\partial v}{\partial z}\right)\right) dz= \rho g H \dfrac{\partial s}{\partial y}\\ + \end{array} \right. +\end{equation} +\\ +We can use Leibniz integral rule\footnote{For a given scalar quantity $f(x,z)$, Leibniz integral rule is written: + +\begin{equation*} +\dfrac{\partial}{\partial x} \int_{\alpha (x)}^{\beta (x)}f(x,z) dz = \int_{\alpha (x)}^{\beta (x)} \dfrac{\partial}{\partial x} f(x,z) dz + f(x,\beta (x)) \dfrac{\partial \beta (x)}{\partial x}- f(x,\alpha (x)) \dfrac{\partial \alpha (x)}{\partial x} +\end{equation*} +\\ +In our case, we use: + +\begin{equation*} +\int_{\alpha (x)}^{\beta (x)} \dfrac{\partial}{\partial x} f(x,z) dz = \dfrac{\partial}{\partial x} \int_{\alpha (x)}^{\beta (x)}f(x,z) dz - f(x,\beta (x)) \dfrac{\partial \beta (x)}{\partial x}+ f(x,\alpha (x)) \dfrac{\partial \alpha (x)}{\partial x} +\end{equation*} +} which gives: + +\begin{multline} +\dfrac{\partial }{\partial x} \int_{b(x,y)}^{s(x,y)}\left(4 \mu \dfrac{\partial u}{\partial x} + 2 \mu \dfrac{\partial v}{\partial y} \right) dz ++ \dfrac{\partial }{\partial y} \int_{b(x,y)}^{s(x,y)}\left(\mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right) dz\\ +-\sigma'_{xx}(s)\dfrac{\partial s}{\partial x}-\sigma'_{xy}(s)\dfrac{\partial s}{\partial x}+\sigma'_{xz}(s) ++\sigma'_{xx}(b)\dfrac{\partial b}{\partial x}+\sigma'_{xy}(b)\dfrac{\partial b}{\partial x}-\sigma'_{xz}(b) += \rho g H \dfrac{\partial s}{\partial x}\label{MA1} +\end{multline} +\begin{multline} +\dfrac{\partial }{\partial x} \int_{b(x,y)}^{s(x,y)}\left( \mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right)dz ++ \dfrac{\partial }{\partial y} \int_{b(x,y)}^{s(x,y)}\left(4 \mu \dfrac{\partial v}{\partial y} + 2 \mu \dfrac{\partial u}{\partial x} \right)dz\\ +-\sigma'_{yx}(s)\dfrac{\partial s}{\partial x}-\sigma'_{yy}(s)\dfrac{\partial s}{\partial x}+\sigma'_{yz}(s) ++\sigma'_{yx}(b)\dfrac{\partial b}{\partial x}+\sigma'_{yy}(b)\dfrac{\partial b}{\partial x}-\sigma'_{yz}(b) += \rho g H \dfrac{\partial s}{\partial y}\label{MA2} +\end{multline} + +\noindent The boundary conditions at the ice/atmosphere interface (\ref{iceatm}) imposes: + +\begin{equation} +\sigma'(s)\overrightarrow{n}=\overrightarrow{0}\\ +\end{equation} +\\ +To the zero order (horizontal bedrock), the boundary conditions at the ice/till interface (\ref{friction0}) is: + +\begin{equation} +\begin{array}{c} +\left( \sigma'(b)\overrightarrow{n}\right)_x=\alpha^2 u\\ +\\ +\left( \sigma'(b)\overrightarrow{n}\right)_y=\alpha^2 v +\end{array} +\end{equation} +\\ +Equation (\ref{MA1}) and (\ref{MA2}) become: + +\begin{equation} + \left\{ \begin{array}{l} +\displaystyle \dfrac{\partial }{\partial x} \int_{b(x,y)}^{s(x,y)}\left(4 \mu \dfrac{\partial u}{\partial x} + 2 \mu \dfrac{\partial v}{\partial y} \right) dz ++ \dfrac{\partial }{\partial y} \int_{b(x,y)}^{s(x,y)}\left(\mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right) dz += \rho g H \dfrac{\partial s}{\partial x}+\alpha^2 u\\ +\\ +\displaystyle \dfrac{\partial }{\partial x} \int_{b(x,y)}^{s(x,y)}\left( \mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right)dz ++ \dfrac{\partial }{\partial y} \int_{b(x,y)}^{s(x,y)}\left(4 \mu \dfrac{\partial v}{\partial y} + 2 \mu \dfrac{\partial u}{\partial x} \right)dz += \rho g H \dfrac{\partial s}{\partial y}+\alpha^2 v\\ + \end{array} \right. +\end{equation} +\\ +MacAyeal's assumptions imply that velocities ($u$ and $v$) do not depend on $z$: there is no need to use Leibniz integral law here. We define the depth averaged viscosity as: $\displaystyle H\overline{\mu}=\int_b^s \mu dz$ so that finally we obtain: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ +\left\{ \begin{array}{l} +\displaystyle \frac{\partial}{\partial x} \left( 4H \bar{\mu} \frac{\partial u}{\partial x}+ 2H \bar{\mu}\frac{\partial v}{\partial y} \right) ++\frac{\partial}{\partial y}\left( H\bar{\mu} \frac{\partial u}{\partial y}+H\bar{\mu} \frac{\partial v}{\partial x}\right) +=\rho g H \frac{\partial s}{\partial x} +\alpha^2 u\\ +\\ +\displaystyle \frac{\partial}{\partial y} \left( 4H \bar{\mu} \frac{\partial v}{\partial y}+2H \bar{\mu}\frac{\partial u}{\partial x}\right) ++\frac{\partial}{\partial x}\left( H\bar{\mu}\frac{\partial u}{\partial y}+H\bar{\mu} \frac{\partial v}{\partial x}\right) +=\rho g H \frac{\partial s}{\partial y}+\alpha^2 v\\ + \end{array} \right. + \\ +\\ +\hline +\end{array} +\end{equation} + +\newpage +\section{Thermodynamic model} + +A thermal model is essential to predict an ice sheet system's evolution since it affects the flow. The viscosity parameter $B$ is highly temperature-dependent. Temperature also affects melting, which in turn affects the glacier geometry and sliding. It is hence needed in a comprehensive time evolution model. + + \subsection{Local equation} + +The most general energy balance (Hooke, 2005 \cite{Hooke2005} p117, Paterson, 1994 \cite{Paterson1994} p224) equation includes a conduction term and a source term (here due to viscous heating): + +\begin{equation} +\dfrac{d \left( \rho c T\right) }{d t}= div \left( k \; \overrightarrow{grad}\: T\right) +\Phi +\end{equation} +where: +\begin{itemize} +\item[--] $c$ ice heat capacity ($J kg\textsuperscript{-1} K\textsuperscript{-1}$) +\item[--] $T$ ice temperature ($K$) +\item[--] $k$ ice heat conductivity ($W m\textsuperscript{-1} K\textsuperscript{-1}$) +\item[--] $\Phi$ viscous heating due to ice flow ($W m\textsuperscript{-3}$) +\end{itemize} +Advection appears when one takes the Eulerian version of the previous equations: + +\begin{equation} +\dfrac{d \left( \rho c T\right)}{d t}= \dfrac{\partial \left( \rho c T\right)}{\partial t} + \overrightarrow{v}. \overrightarrow{grad}\left( \rho c T \right) +\end{equation} +this gives: +\begin{equation} +\dfrac{\partial \left( \rho c T\right)}{\partial t}= -\overrightarrow{v}. \overrightarrow{grad}\left( \rho c T \right) ++ div \left( k \; \overrightarrow{grad}\: T\right) +\Phi +\label{thermal1} +\end{equation} + + \subsection{Simplifications} +In $ISSM$, several assumptions are employed. The first one is that (1) the heat capacity and conductivity are constant, and (2) spatial and thermal dependence of $k$ and $c$ are neglected. These are classical assumptions (Hooke, 2005 \cite{Hooke2005} p117). Using the ice incompressibility, equation (\ref{thermal1}) becomes: +\begin{equation} +\dfrac{\partial T}{\partial t}= -\overrightarrow{v}. \overrightarrow{grad}\left( T \right)+ \dfrac{k}{ \rho c } \Delta T +\dfrac{\Phi}{ \rho c } +\end{equation} +\\ +The local heat transfer is thus a result of horizontal and vertical advection, conduction\footnote{In many thermal models, the horizontal advection is neglected (Paterson, 1994 \cite{Paterson1994} p216; Hooke, 2005 \cite{Hooke2005} p118). Horizontal conduction is often neglected as well (Hulbe, 1999 \cite{Hulbe1999}; Hooke, 2005 \cite{Hooke2005} p118). These assumptions are not employed here.}, and internal deformation heating: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ \displaystyle +\dfrac{\partial T}{\partial t}= -\left( u\dfrac{\partial T}{\partial x} +v\dfrac{\partial T}{\partial y} +w\dfrac{\partial T}{\partial z} \right)+ \dfrac{k}{ \rho c }\left( \dfrac{\partial^2 T}{\partial x^2}+\dfrac{\partial^2 T}{\partial y^2}+\dfrac{\partial^2 T}{\partial z^2}\right) +\dfrac{\Phi}{ \rho c }\\ +\\ +\hline +\end{array} +\label{thermalequation} +\end{equation} + + \subsection{Internal deformation heating} + +The viscous heating due to ice flow is +\begin{equation} +\Phi=Tr\left( \sigma\dot{\varepsilon}\right) +\end{equation} +\\ +One can use the deviatoric stress tensor and use the incompressibility: + +\begin{equation} +\Phi =Tr\left( \sigma'\dot{\varepsilon}-P\dot{\varepsilon} \right)= Tr\left( \sigma'\dot{\varepsilon}\right) -P \;Tr\left( \dot{\varepsilon} \right) =Tr\left( \sigma'\dot{\varepsilon}\right) +\end{equation} +We do not use this equation in $ISSM$. We use the effective strain rate $\dot{\varepsilon}_e $ and effective deviatoric stress $\sigma_e $ defined in (\ref{epsilone1}) to obtain: +\begin{equation} +\begin{array}{r l} +\displaystyle \Phi^2 & \displaystyle += \left( Tr\left( \sigma'\dot{\varepsilon}\right)\right)^2 += \left( \sum_{i,j} \sigma'_{ij} \dot{\varepsilon}_{ji} \right)^2 += \left(\sum_{i,j} \sigma'_{ij} \dot{\varepsilon}_{ij} \right)^2 += \left(\sum_{i,j} \sigma'_{ij} \dot{\varepsilon}_{ij} \right) \left(\sum_{k,l} \sigma'_{kl}\dot{\varepsilon}_{kl} \right)\\ +\\ & \displaystyle += \left(\sum_{i,j} 2 \mu \dot{\varepsilon}_{ij} \dot{\varepsilon}_{ij}\right) \left( \sum_{k,l} \sigma'_{kl}\dfrac{1}{2 \mu}\sigma'_{kl}\right) += \sum_{i,j} \dot{\varepsilon}_{ij} ^2 \sum_{kl} {\sigma'_{kl}} ^2 += 2 \dot{\varepsilon}_e^2 \;\; 2 {\sigma'_e }^2 +\end{array} +\end{equation} +\\ +In conclusion, $ISSM$ uses the following equation: + +\begin{equation} +\Phi = 2\dot{\varepsilon}_e \sigma'_e = 4\mu \dot{\varepsilon}_e^2 +\end{equation} + + \subsection{Thermal model boundary conditions} + \subsubsection*{Ice/Atmosphere interface} +On the upper surface, the temperature is imposed as the mean annual air temperature at the surface, $T_s$. + + \subsubsection*{Ice/Water boundary} +On the Ice/Water interface, there is an imposed flux, which depends on the temperature difference between the ice shelf surface $T_b$ and the ocean $T=T_{pmp}$: + +\begin{equation} +k\left. \left( \overrightarrow{grad}\;T\right) \right|_b.\overrightarrow{n} \simeq -k \left. \dfrac{\partial T}{\partial z}\right| _{b} + = -\rho_w c_{pM}\gamma\left(T_b-T_{pmp} \right) +\end{equation} +With: +\begin{itemize} +\item[--] $\overrightarrow{n}=( n_x, n_y, n_z)$ normal vector pointing outward +\item[--] $c_{pM}$ mixed layer (see Holland, 1999 \cite{Holland1999} p5) specific heat capacity ($J kg\textsuperscript{-1} K\textsuperscript{-1}$) +\item[--] $\gamma$ thermal exchange velocity ($ m s\textsuperscript{-1}$) +\item[--] $T_{pmp}=273.15 - \beta P$ pressure melting point ($K$)(See Paterson \cite{Paterson1994} p212) +\end{itemize} +If the ocean temperature is above the ice shelf base temperature, the flux is positive (heat goes from the ocean to the ice shelf), whereas when the ice shelf base is warmer than the ocean, the flux is negative (heat goes from the ice shelf to the ocean). + + \subsubsection*{Ice/Till boundary} +The basal thermal boundary condition is supplied by a geothermal flux $G$ at the ice sheet bottom and the heat due to basal friction. When the pressure melting point is reached, an additional flux is generated: + +\begin{equation} +k\left. \left( \overrightarrow{grad}\;T\right) \right| _b.\overrightarrow{n} \simeq \underbrace{-k \left. \dfrac{\partial T}{\partial z}\right| _{b}}_{Conduction} + = \underbrace{G+\overrightarrow{\tau}_b . \overrightarrow{u}_b}_{Energy \; input}+ \underbrace{\rho L \dot{M}_b }_{Melting} +\end{equation} +\\ +Where $\overrightarrow{n}=( n_x, n_y, n_z)$ is the unit normal vector pointing outward and $L$ is the specific latent heat of fusion. The basal temperature in the ice mass is kept at the pressure melting point $T_{pmp}= 273.15 - \beta P$ (See Paterson \cite{Paterson1994} p212) whenever it is reached (Pattyn, 2003 \cite{Pattyn2003}). In other words, the boundary condition at the ice/till interface is an imposed flux. When this imposed flux generates ice temperatures above the pressure melting point, the boundary condition is changed into an imposed temperature $T_b=T_{pmp}$. + + \subsection{Transformation of the basal boundary condition} +\label{meltingsection} +At the base, we impose a heat flux, and the temperature cannot exceed $T_{pmp}$. If the temperature reaches the pressure melting point, melting occurs. All these conditions can be summarized by the following equations: + +\begin{equation} +\left\{ \begin{array}{l} +\displaystyle -k \left. \dfrac{\partial T}{\partial z}\right| _b =G + \overrightarrow{\tau}_b . \overrightarrow{u}_b - \rho L\dot{M}_b \\ +\\ +\displaystyle \dot{M}_b\left( T-T_{pmp}\right) =0 \\ +\\ +\displaystyle T-T_{pmp} \leq 0 \\ +\\ +\displaystyle \dot{M}_b \geq 0 \\ + \end{array} \right. +\end{equation} +\\ +The last three equations can be represented by the following graph: +\begin{figure}[H] +\begin{center} +\includegraphics[width=9cm]{TpmpMb.png} +\caption{$\dot{M}_b$ as a function of $T-T_{pmp}$} +\label{TpmpMb} +\end{center} +\end{figure} +\noindent +These equations are not used in $ISSM$ since they are introducing nonlinearities. To avoid that, we use a penalty method exactly as in contact mechanics (See Chapter \ref{chappenalty} for more details). + +\section*{Conclusion} +We used the mass conservation, the momentum balance and Glen's flow law to deduce the system of equations that is governing ice flow. This system of equations constitutes the full Stokes equations. This model unfortunately requires huge computational resources in terms of computer memory and execution time: it is a 3d model that solves 4 unknowns ($u,v,w,P$). We also presented two other models: MacAyeal's shelfy-stream model and Frank Pattyn's higher-order model. Frank Pattyn uses still a 3d mesh but decorellates the horizontal velocity components from the vertical component. There are hence only 2 unknowns ($u,v$). Doug MacAyeal went further by vertically integrating the equations, neglecting vertical shear. These three models give three different refinement levels and require three different computational powers, which is priceless to model a continent such as Antarctica since one can use different models on different areas depending on the accuracy needed and the phenomena involved. + +\newpage +\chapter{Dynamic Models Finite Element Formulation} +\label{Appendix1} +$ISSM$ uses finite element method to solve the equations described in the first chapter. This chapter explains how we built a finite element model for each solution. MacAyeal's model formulation is very detailed for those who are not very familiar with finite element method. +For more details about finite element method, +the reader is invited to consult Zienkiewicz \emph{The Finite Element Method, Fourth Edition}, 1994 \cite{Zienkiewicz1994}. + \section{MacAyeal's Shelfy-stream model} + + \subsection{Geometry and notations} +\begin{figure}[H] +\begin{center} +\includegraphics[width=11cm]{schema5.png} +\caption{Geometry and notations} +\label{schema5} +\end{center} +\end{figure} +\vspace*{-0.4cm} +We adopt the following notations: +\begin{itemize} + \item[--] $\Omega$ is the open surface that constitutes the entire glacier system + \vspace*{-0.9mm} + \item[--] $\partial\Omega$ are points located at the boundary + \vspace*{-0.9mm} + \item[--] $\Gamma$ are points located at the ice front + \vspace*{-0.9mm} + \item[--] $\Gamma_u=\partial\Omega\backslash\Gamma$ are all other points located at the boundary\\ +\end{itemize} + + \subsection{Equations} + +The equations of MacAyeal's Shelfy-stream model are: + +\begin{equation} +\label{FEMacAyealEq} +\left\{ \begin{array}{l} +\displaystyle \frac{\partial}{\partial x} \left( 2H \mu \left( 2\frac{\partial u}{\partial x}+\frac{\partial v}{\partial y}\right) \right) ++\frac{\partial}{\partial y}\left( H\mu \left( \frac{\partial u}{\partial y}+\frac{\partial v}{\partial x}\right) \right) +-\rho g H \frac{\partial s}{\partial x} +\tau_x=0\\ +\\ +\displaystyle \frac{\partial}{\partial y} \left( 2H \mu \left( 2\frac{\partial v}{\partial y}+\frac{\partial u}{\partial x}\right) \right) ++\frac{\partial}{\partial x}\left( H\mu \left( \frac{\partial u}{\partial y}+\frac{\partial v}{\partial x}\right) \right) +-\rho g H \frac{\partial s}{\partial y}+\tau_y=0\\ + \end{array} \right. +\end{equation} +\\ +At the ice front, the boundary condition is (\ref{icefrontBC}): + +\begin{equation} +\sigma' \overrightarrow{n} = \left( P-P_w\right) \overrightarrow{n} +\end{equation} +where: +\begin{itemize} +\item $P=\rho g \left( s-z\right) $ is the ice pressure +\item $P=-\rho_w g z $ is the water pressure $\left( z\leq 0\right) $ +\end{itemize} +MacAyeal's model uses vericaly integrated quantities, we must apply the verticaly-integrated form of the previous equation which is: + +\begin{equation} +\sigma' \overrightarrow{n} =\left( \int_b^s \rho g \left( s-z \right) dz+\int_b^0 \rho_w g z dz \right) \overrightarrow{n} += \left( \dfrac{1}{2}\rho g H^2 -\dfrac{1}{2} \rho_w g b^2 \right) \overrightarrow{n} +\end{equation} +\\ +The boundary conditions are: a dynamic boundary condition (Neumann) at the ice front, a friction law on the ice sheet, and single point constraint (Dirichlet) on the other borders of the domain $\Omega$. +It is more convenient to consider these specified velocities as nill. At the end of the process, the velocity field will be updated to take these constraints into account. + +\begin{equation} +\left\{ \begin{array}{l l} +\text{Ice Front } \Gamma_i: & \displaystyle \sigma' \overrightarrow{n} = F \overrightarrow{n} =\left( \dfrac{1}{2}\rho g H^2 -\dfrac{1}{2}\rho_w g b^2\right) \overrightarrow{n}\\ +\\ +\text{Other borders } \Gamma_u: & u=v=0\\ +\end{array} \right. +\end{equation} +\newpage + \subsection{Weak Formulation} + +Now that we have all the equations and boundary conditions, we write the weak formulation to solve these equations +using finite element. We define a kinematically admissible velocity field\footnote{$H^{1}(\Omega\cup\partial\Omega)$ is a Sobolev space that contains all the square-integrable functions defined on $\Omega\cup\partial\Omega$ that have a square-integrable first derivative +\begin{equation} +\int_{\Omega\cup\partial\Omega} \phi^2 d\Omega<\infty \text{ and } +\int_{\Omega\cup\partial\Omega} \left( \dfrac{\partial \phi}{\partial x_i}\right) ^2 d\Omega<\infty +\end{equation}}\footnote{$\overrightarrow{\phi}$ is a 2d function and each of its component +$\left( \phi_x,\phi_y\right)$ is in $H^{1}(\Omega\cup\partial\Omega)$. Therefore +$\overrightarrow{\phi} \in \left( H^{1}(\Omega\cup\partial\Omega) \right)^2$ } + $\overrightarrow{\phi}$: +\begin{equation} +\overrightarrow{\phi}(x,y)\in\lbrace \left( H^{1}(\Omega\cup\partial\Omega) \right)^2 \quad \backslash\quad \overrightarrow{\phi}(x,y)=\overrightarrow{0}\qquad (x,y)\in\Gamma_u\rbrace +\end{equation} +\\ +For any function of this virtual field, we take the scalar product of the equations (\ref{FEMacAyealEq}) with $\overrightarrow{\phi}=\left(\phi_x,0 \right) $ and $\overrightarrow{\phi}=\left(0,\phi_y \right) $ that are 2 other kinematically admissible velocity fields, and integrate these products over the domain. Indeed, if $\overrightarrow{\phi}$ is a kinematically admissible velocity field, then $\overrightarrow{\phi_1}=\left(\phi_x,0 \right) $ and $\overrightarrow{\phi_2}=\left(0,\phi_y \right) $ are also two kinematically admissible velocity fields. This gives us: + +\begin{equation*} +\iint_\Omega %double +\left[ \frac{\partial}{\partial x} \left(2 H \mu \left( 2\frac{\partial u}{\partial x}+\frac{\partial v}{\partial y}\right) \right)\phi_x ++\frac{\partial}{\partial y}\left( H\mu \left( \frac{\partial u}{\partial y}+\frac{\partial v}{\partial x}\right) \right)\phi_x +-\rho g H \frac{\partial s}{\partial x}\phi_x +\tau_x\phi_x \right] d\Omega =0 +\end{equation*} + +\begin{equation*} +\iint_\Omega %double +\left[\frac{\partial}{\partial y} \left( 2H \mu \left( 2\frac{\partial v}{\partial y}+\frac{\partial u}{\partial x}\right) \right) \phi_y ++\frac{\partial}{\partial x}\left( H\mu \left( \frac{\partial u}{\partial y}+\frac{\partial v}{\partial x}\right) \right) \phi_y +-\rho g H \frac{\partial s}{\partial y}\phi_y +\tau_y\phi_y \right] d\Omega =0 +\end{equation*} +\\ +One intergrates by parts the two first terms in order to merge in the force on the ice front $\Gamma$: + +\begin{multline} +\iint_\Omega %double + 2H \mu \left( 2\frac{\partial u}{\partial x}+\frac{\partial v}{\partial y}\right) \frac{\partial \phi_x}{\partial x} ++ H\mu \left( \frac{\partial u}{\partial y}+\frac{\partial v}{\partial x}\right) \frac{\partial \phi_x }{\partial y} -\tau_x\phi_x d\Omega\\ + =\int_\Gamma F n_x\phi_xd\Gamma - +\iint_\Omega %double +\rho g H \frac{\partial s}{\partial x}\phi_x d\Omega +\label{FFU} +\end{multline} +\begin{multline} +\iint_\Omega %double + 2 H \mu \left( 2\frac{\partial v}{\partial y}+\frac{\partial u}{\partial x}\right) \frac{\partial \phi_y}{\partial x} ++ H\mu \left( \frac{\partial u}{\partial y}+\frac{\partial v}{\partial x}\right) \frac{\partial \phi_y}{\partial y} -\tau_y\phi_yd\Omega \\ +=\int_\Gamma F n_y\phi_y d\Gamma - +\iint_\Omega %double +\rho g H \frac{\partial s}{\partial y}\phi_y d\Omega +\label{FFV} +\end{multline} + + \subsection{Finite element discretisation, Galerkin method} + +The domain is meshed using triangles. There are a $nel$ elements and $nods$ grids. We use the nodal functions of each grid, which are continuous on the domain and affine on each element. +We now project the unknows on the nodal functions: + +\begin{center} + $(\phi_i)_{1\leq i\leq nods}$ +\end{center} +\begin{equation} +\begin{array}{c} +\displaystyle u\left( x,y\right) = \sum_{i=1}^{nods}u_{i}\phi_{i}\left( x,y\right) \\ +\\ +\displaystyle v\left( x,y\right) = \sum_{i=1}^{nods}v_{i}\phi_{i}\left( x,y\right) +\end{array} +\label{decomp} +\end{equation} +\\ +We build a vector $U$ that holds all the unknowns of the velocity field: + +\begin{equation} +U=\left[ \begin{array}{c} +u_{1}\\ +v_{1}\\ +...\\ +u_{nods}\\ +v_{nods}\\ + \end{array} \right] +\end{equation} +\\ +With this new field and with $\tau_x = -\alpha^2 u$, $\tau_y = -\alpha^2 v$, we have: +\begin{center} + $\forall 1 \leq i \leq nods$ +\end{center} +\begin{multline} +\sum_{j=1}^{nods} \iint_\Omega %double + 2H \mu \left( 2 u_{j} \frac{\partial \phi_{j}}{\partial x}+v_j \frac{\partial \phi_{j}}{\partial y}\right) \frac{\partial \phi_i}{\partial x} ++ H\mu \left( u_j \frac{\partial \phi_{j}}{\partial y}+v_j \frac{\partial \phi_{j}}{\partial x}\right) \frac{\partial \phi_i }{\partial y} +\alpha^2 u_j\phi_j \phi_i d\Omega\\ + =\int_\Gamma F n_x\phi_i d\Gamma - +\iint_\Omega %double +\rho g H \frac{\partial s}{\partial x}\phi_i d\Omega +\end{multline} +\begin{multline} +\sum_{j=1}^{nods} \iint_\Omega %double + 2 H \mu \left( 2 v_j \frac{\partial \phi_{j}}{\partial y}+u_j \frac{\partial \phi_{j}}{\partial x}\right) \frac{\partial \phi_i}{\partial y} ++ H\mu \left( u_j\frac{\partial \phi_{j}}{\partial y}+v_j\frac{\partial \phi_{j}}{\partial x}\right) \frac{\partial \phi_i}{\partial x} +\alpha^2 v_j\phi_j\phi_id\Omega \\ +=\int_\Gamma F n_y\phi_i d\Gamma - +\iint_\Omega %double +\rho g H \frac{\partial s}{\partial y}\phi_i d\Omega +\end{multline} +By rearranging terms: +\begin{center} + $\forall 1 \leq i \leq nods$ +\end{center} +\begin{multline} +\sum_{j=1}^{nods} \iint_\Omega %double + \left( 4 H \mu \frac{\partial \phi_{j}}{\partial r} \frac{\partial \phi_i}{\partial r} + + H \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial y} +\alpha^2 \phi_j \phi_i \right) u_j ++ \left( 2 H \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial x} + +H \mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial y} \right) v_j d\Omega\\ + =\int_\Gamma F n_x\phi_i d\Gamma - +\iint_\Omega %double +\rho g H \frac{\partial s}{\partial x}\phi_i d\Omega +\label{FFU2} +\end{multline} +\begin{multline} +\sum_{j=1}^{nods} \iint_\Omega %double + \left( 2 H \mu \frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_i}{\partial y} + + H \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial x} \right) u_j ++ \left( 4 H \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial y} + +H \mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial x}+\alpha^2 \phi_j \phi_i \right) v_j d\Omega\\ + =\int_\Gamma F n_y\phi_i d\Gamma - +\iint_\Omega %double +\rho g H \frac{\partial s}{\partial y}\phi_i d\Omega +\label{FFV2} +\end{multline} +\\ +We see the stiffness matrix $K$ and load vector $F$ appearing, so that the previous equation can be written in matrix form: +\begin{equation} +\left[ K \right] U =F +\label{FE} +\end{equation} +\\ +or + +\begin{equation} +\left[ +\begin{array}{c c c c} %K + & \vdots & \vdots & \\ + \cdots & K_{2i-1,2j-1} & K_{2i-1,2j} & \cdots\\ + &&& \\ + \cdots & K_{2i,2j-1} & K_{2i,2j} & \cdots\\ + & \vdots & \vdots & \\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +u_j\\ +\\ +v_j\\ +\vdots\\ +\end{array} +\right] += +\left[ +\begin{array}{c} %F +\vdots \\ +F_{2j-1}\\ +\\ +F_{2j}\\ +\vdots\\ +\end{array} +\right] +\end{equation} +\\ +We have the following expressions: + +\begin{equation} +\begin{array}{l l} +\displaystyle + +K_{2i-1,2j-1} &\displaystyle = +\iint_\Omega %double + \left( 4 H \mu \frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_i}{\partial x} + + H \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial y} +\alpha^2 \phi_j \phi_i \right) d\Omega\\ + +\\ + +\displaystyle +K_{2i-1,2j} &\displaystyle = +\iint_\Omega %double +\left( 2 H \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial x} + +H \mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial y} \right) d\Omega \\ + +\\ + +\displaystyle +K_{2i,2j-1} &\displaystyle = +\iint_\Omega %double + \left( 2 H \mu \frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_i}{\partial y} + + H \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial x} \right) d\Omega\\ + +\\ + +\displaystyle +K_{2i,2j} &\displaystyle = +\iint_\Omega %double +\left( 4 H \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial y} + +H \mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial x}+\alpha^2 \phi_j \phi_i \right) d\Omega \\ + +\\ + +\displaystyle +F_{2i-1} &\displaystyle = +\int_\Gamma F n_x\phi_i d\Gamma - +\iint_\Omega %double +\rho g H \frac{\partial s}{\partial x}\phi_i d\Omega\\ + +\\ + +\displaystyle + F_{2i} & \displaystyle = +\int_\Gamma F n_y\phi_i d\Gamma - +\iint_\Omega %double +\rho g H \frac{\partial s}{\partial y}\phi_i d\Omega \\ +\end{array} +\end{equation} +\newpage + \subsection{Decomposition over the elements} + +The integrals over $\Omega$ can be divided in several integrals over each elements. Remembering that the mesh contains $nel$ elements,equations (\ref{FFU2}) and (\ref{FFV2}) become: +\begin{center} + $\forall 1 \leq i \leq nods$ +\end{center} +\begin{multline} +\sum_{E=1}^{nel} \left( +\sum_{j=1}^{nods} \iint_E %double + \left( 4 H \mu \frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_i}{\partial x} + + H \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial y} +\alpha^2 \phi_j \phi_i \right) u_j ++ \left( 2 H \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial x} + +H \mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial y} \right) v_j +dS \right) \\ + =\sum_{E=1}^{nel} \left( +\int_{E \cup\Gamma} +F n_x\phi_i dl - +\iint_E %double +\rho g H \frac{\partial s}{\partial x}\phi_i dS +\right) +\end{multline} +\begin{multline} +\sum_{E=1}^{nel} \left( +\sum_{j=1}^{nods} +\iint_E %double + \left( 2 H \mu \frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_i}{\partial y} + + H \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial x} \right) u_j ++ \left( 4 H \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial y} + +H \mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial x}+\alpha^2 \phi_j \phi_i \right) v_j + dS \right) \\ +=\sum_{E=1}^{nel}\left( +\int_{E \cup\Gamma} F n_y\phi_i dl - +\iint_E %double +\rho g H \frac{\partial s}{\partial y}\phi_i dS +\right) +\end{multline} +\\ +To compute the matrices $K$ and $F$, instead of calculating the integral over $\Omega$ directly, we will first integrate over each element $E$ +of the mesh to obtain several \emph{Elementary Matrices}, that will be assembled to get the final Stiffness matrix and load vector during the assembly process.\\ +\\ +The nodal functions are built so that $\forall 1\leq i \leq nods$: + +\begin{equation} +\phi_i(N_j)=\delta_{ij} +\end{equation} +\\ +where $\delta_{ij}$ is the Kronecker symbol. The nodal function is equal to 1 at a node and 0 on every other nodes. So for one element $E$, the only nodal +functions that are useful in (\ref{FFU}) and (\ref{FFV}) (ie: do not give 0=0) are the nodal functions corresponding to the vertexes of the element. + Since the elements are triangle, there are only 3 nodal functions that need to be taken into account.\\ +\\ +One element $E$ gives 6 equations: we take 3 nodal functions for $\phi_i(x,y)$ (the nodal functions corresponding to the vertexes of $E$), +and each $\phi_i$ gives 2 equations (one for the x-component, and one for the y-component). Therefore, an elementary stiffness matrix $K_E$ will be $6 \times 6$, and the elementary load vector will be of size $6$. +\newpage + \subsection{Reference element and numerical integration} + +Rather than calculating these integrals for each element, one uses a \emph{Reference Element} $\hat{E}$, and a transformation $\varphi$ that transforms the reference element to the element $E$ (See Fig.\ref{triangles}): +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{triaelem.png} +\caption{Transformation from the reference triangle, to the current element of the mesh} +\label{triangles} +\end{center} +\end{figure} +For any function $f(x,y)$, the transformation verifies: + +\begin{equation} +\iint_E f(x,y)dS = \iint_{\hat{E}} \hat{f}(r,s) \vert J \vert d\hat{S} +\end{equation} +\\ +Where $J$ is the Jacobian determinant of the $\varphi$. This Jacobian is calculated in section \ref{RE2D} and is constant over the element: + +\begin{equation} +J= +\left[ +\begin{array}{c c} +\displaystyle +\frac{1}{2}\left( x_2-x_1 \right) & \displaystyle \frac{\sqrt{3}}{6}\left(2x_3-x_1-x_2\right) \\ +\\ +\displaystyle +\frac{1}{2}\left( y_2- y_1\right)& \displaystyle \frac{\sqrt{3}}{6}\left(2y_3-y_1-y_2\right) + \\ +\end{array} +\right] +\end{equation} +\\ +Since $ISSM$ is a Matlab code, the integrals cannot be calculated directly. The numerical integration use a gaussian quadrature to approximate the integral as a weighted sum of function values at specified points (gaussian points) within the domain: + +\begin{equation} +\iint_E f(x,y)dS = \iint_{\hat{E}} \hat{f}(r,s) \vert J\vert d\hat{S} \simeq \sum_{g=1}^{n} w_g \hat{f}(r_g,s_g) +\end{equation} +\\ +where $w_g$ are the quadrature rules weights and $(r_g,s_g)$ are the evaluation points, $g=1,2...,n$. The gauss quadrature is such that it makes the computed integral exact for all polynomials of a certain degree. All the integrals that appear in the stiffness matrix and load vector involve polynomials since nodal function are polynomials of degree 1. It is then easy to evaluate the degree of the polynomial to integrate (usually 2), and then find the gauss quadrature that gives an exact computed integral. + +The integration points are given with their area coordinates (See Fig.\ref{triangles2}): + +\begin{equation} +\displaystyle (r_g,s_g)\equiv (\frac{A_1}{A_1+A_2+A_3},\frac{A_2}{A_1+A_2+A_3},\frac{A_3}{A_1+A_2+A_3}) +\end{equation} +\\ +We use this system of coordinates because they have the following property: + +\begin{equation} +1 \leq k \leq 3\quad \quad \frac{A_k}{A_1+A_2+A_3}=L_k(r_i,s_i) +\end{equation} +\\\begin{figure}[H] +\begin{center} +\includegraphics[width=8cm]{barycentric_tria.png} +\caption{Area coordinates} +\label{triangles2} +\end{center} +\end{figure} + +The number of gaussian points depends on the order of integration. The order of integration can be computed from the polynomial degree $p$ that needs to be integrated. The formula is: + +\begin{equation} +order=\frac{p+1}{2} +\end{equation} +\\ +Here, the degree of the polynome under the integral is $2$ (the drag implies the calculation of $\phi_j \phi_i$ whose degree is 2). The order of integration is hence 2 (the order must be an integer). For this order, $3$ gaussian points are required: + +\begin{center} +\begin{tabular}{|l |c| c| c|} +\hline +&&&\\ +Gaussian point & 1 & 2 & 3 \\ +&&&\\ +\hline +\hline +&&&\\ +Weight & 0.577 & 0.577 & 0.577\\ +&&&\\ +\hline +&&&\\ +Area coordinates & +$ +\begin{array}{c} +\displaystyle \frac{2}{3}\\ +\\ +\displaystyle \frac{1}{6}\\ +\\ +\displaystyle \frac{1}{6}\\ +\end{array} +$ +& +$ +\begin{array}{c} +\displaystyle \frac{1}{6}\\ +\\ +\displaystyle \frac{2}{3}\\ +\\ +\displaystyle \frac{1}{6}\\ +\end{array} +$ +& +$ +\begin{array}{c} +\displaystyle \frac{1}{6}\\ +\\ +\displaystyle \frac{1}{6}\\ +\\ +\displaystyle \frac{2}{3}\\ +\end{array} +$ +\\ +&&&\\ +\hline +\end{tabular} +\end{center} +\newpage + \subsection{Elementary stiffness matrix} +To compute the elementary stiffness matrix, we first remove the basal drag, that will create a first elementary stiffness matrix $K1$, the basal drag will constitute another stiffness matrix $K2$. The elementary stiffness matrix will be the sum of $K1$ and $K2$ ($K_E=K1+K2$). + + \subsubsection{Without basal drag} + +This matrix has the following shape: + +\begin{center} + $1 \leq i \leq 3$ and $1 \leq j \leq 3$ +\end{center} +\begin{equation} +\begin{array}{l c r} +\displaystyle +K1_{2i-1,2j-1} & = & \displaystyle +\iint_E %double + \left( 4 H \mu \frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_i}{\partial x} + + H \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial y}\right) d\Omega\\ + +\\ + +\displaystyle +K1_{2i-1,2j}& = & \displaystyle +\iint_E %double +\left( 2 H \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial x} + +H \mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial y} \right) d\Omega \\ + +\\ + +\displaystyle +K1_{2i,2j-1}& = & \displaystyle +\iint_E %double + \left( 2 H \mu \frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_i}{\partial y} + + H \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial x} \right) d\Omega\\ + +\\ + +\displaystyle +K1_{2i,2j}& = & \displaystyle +\iint_E %double +\left( 4 H \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial y} + +H \mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial x} \right) d\Omega \\ +\end{array} +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix become: +\begin{center} + $1 \leq i \leq 3$ and $1 \leq j \leq 3$ +\end{center} +\begin{equation*} +\begin{array}{l l} +\displaystyle +K1_{2i-1,2j-1}&\displaystyle = +\iint_{\hat{E}} %double + \left( 4 H \mu \frac{\partial L_{j}}{\partial \varphi_x(r,s)} \frac{\partial L_i}{\partial \varphi_x(r,s)} + + H \mu \frac{\partial L_{j}}{\partial \varphi_y(r,s)} \frac{\partial L_i}{\partial \varphi_y(r,s)}\right) \vert J \vert d\hat{S} +\\ \\ & +\displaystyle \simeq +\sum_{g=1}^3 w_g \left( 4 H \mu \frac{\partial L_{j}}{\partial \varphi_x(r,s)} \frac{\partial L_i}{\partial \varphi_x(r,s)} + + H \mu \frac{\partial L_{j}}{\partial \varphi_y(r,s)} \frac{\partial L_i}{\partial \varphi_y(r,s)}\right) \vert J \vert \\ + +\\ + +\displaystyle +K1_{2i-1,2j} &\displaystyle = +\iint_{\hat{E}} %double +\left( 2 H \mu \frac{\partial L_{j}}{\partial \varphi_y(r,s)}\frac{\partial L_i }{\partial \varphi_x(r,s)} + +H \mu\frac{\partial L_{j}}{\partial \varphi_x(r,s)} \frac{\partial L_{i}}{\partial \varphi_y(r,s)} \right) \vert J \vert d\hat{S} +\\ \\ & +\displaystyle \simeq +\sum_{g=1}^3 w_g +\left( 2 H \mu \frac{\partial L_{j}}{\partial \varphi_y(r,s)}\frac{\partial L_i }{\partial \varphi_x(r,s)} + +H \mu\frac{\partial L_{j}}{\partial \varphi_x(r,s)} \frac{\partial L_{i}}{\partial \varphi_y(r,s)} \right) \vert J \vert +\\ + +\\ + +\displaystyle +K1_{2i,2j-1} & \displaystyle = +\iint_{\hat{E}} %double + \left( 2 H \mu \frac{\partial L_{j}}{\partial \varphi_x(r,s)} \frac{\partial L_i}{\partial \varphi_y(r,s)} + + H \mu \frac{\partial L_{j}}{\partial \varphi_y(r,s)} \frac{\partial L_i}{\partial \varphi_x(r,s)} \right) \vert J \vert d\hat{S} +\\ \\ & +\displaystyle \simeq +\sum_{g=1}^3 w_g +\left( 2 H \mu \frac{\partial L_{j}}{\partial \varphi_x(r,s)} \frac{\partial L_i}{\partial \varphi_y(r,s)} + + H \mu \frac{\partial L_{j}}{\partial \varphi_y(r,s)} \frac{\partial L_i}{\partial \varphi_x(r,s)} \right) +\vert J \vert +\\ + +\\ + +\displaystyle +K1_{2i,2j} & \displaystyle = +\iint_{\hat{E}} %double +\left( 4 H \mu \frac{\partial L_{j}}{\partial \varphi_y(r,s)}\frac{\partial L_i }{\partial \varphi_y(r,s)} + +H \mu\frac{\partial L_{j}}{\partial \varphi_x(r,s)} \frac{\partial L_{i}}{\partial \varphi_x(r,s)} \right) \vert J \vert d\hat{S} +\\ \\ & +\displaystyle \simeq +\sum_{g=1}^3 w_g +\left( 4 H \mu \frac{\partial L_{j}}{\partial \varphi_y(r,s)}\frac{\partial L_i }{\partial \varphi_y(r,s)} + +H \mu\frac{\partial L_{j}}{\partial \varphi_x(r,s)} \frac{\partial L_{i}}{\partial \varphi_x(r,s)} \right) +\vert J \vert +\\ +\end{array} +\end{equation*} +\\ +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K1= \sum_{g=1}^3 [B]^T[D][B']$ as follows\footnote{$\left[ I_n\right]$ is a common notation for an identity matrix of size $n\times n$}: +\begin{center} +$D=2 w_g H \mu \vert J \vert \left[ I_3\right] $ +\end{center} +\begin{equation} +[B]^T= +\left[ +\begin{array}{c c c} +\displaystyle +\frac{\partial L_1}{\partial \varphi_x(r,s)} & 0 & \displaystyle \frac{1}{2} \frac{\partial L_1}{\partial \varphi_y(r,s)} \\ +\\ +\displaystyle +0 &\displaystyle \frac{\partial L_1}{\partial \varphi_y(r,s)} & \displaystyle \frac{1}{2} \frac{\partial L_1}{\partial \varphi_x(r,s)} \\ +\\ + \displaystyle + \frac{\partial L_2}{\partial \varphi_x(r,s)} & 0 &\displaystyle \frac{1}{2} \frac{\partial L_2}{\partial \varphi_y(r,s)} \\ +\\ +\displaystyle +0 &\displaystyle \frac{\partial L_2}{\partial \varphi_y(r,s)} & \displaystyle \frac{1}{2} \frac{\partial L_2}{\partial \varphi_x(r,s)} \\ +\\ +\displaystyle +\frac{\partial L_3}{\partial \varphi_x(r,s)} & 0 &\displaystyle \frac{1}{2} \frac{\partial L_3}{\partial \varphi_y(r,s)} \\ +\\ +\displaystyle +0 &\displaystyle \frac{\partial L_3}{\partial \varphi_y(r,s)} &\displaystyle \frac{1}{2} \frac{\partial L_3}{\partial \varphi_x(r,s)} \\ +\\ +\end{array} +\right] +\end{equation} +\begin{equation} +[B']= +\left[ +\begin{array}{c c c c c c} +\displaystyle +2 \frac{\partial L_1}{\partial \varphi_x(r,s)} & \displaystyle \frac{\partial L_1}{\partial \varphi_y(r,s)} +& \displaystyle 2\frac{\partial L_2}{\partial \varphi_x(r,s)} & \displaystyle \frac{\partial L_2}{\partial \varphi_y(r,s)} +& \displaystyle 2\frac{\partial L_3}{\partial \varphi_x(r,s)} & \displaystyle \frac{\partial L_3}{\partial \varphi_y(r,s)}\\ +\\ +\displaystyle \frac{\partial L_1}{\partial \varphi_x(r,s)} & \displaystyle 2\frac{\partial L_1}{\partial \varphi_y(r,s)} & +\displaystyle \frac{\partial L_2}{\partial \varphi_x(r,s)} & \displaystyle 2\frac{\partial L_2}{\partial \varphi_y(r,s)} & +\displaystyle \frac{\partial L_3}{\partial \varphi_x(r,s)} & \displaystyle 2\frac{\partial L_3}{\partial \varphi_y(r,s)}\\ + \\ +\displaystyle \frac{\partial L_1}{\partial \varphi_y(r,s)} & \displaystyle \frac{\partial L_1}{\partial \varphi_x(r,s)} & +\displaystyle \frac{\partial L_2}{\partial \varphi_y(r,s)} & \displaystyle \frac{\partial L_2}{\partial \varphi_x(r,s)} & +\displaystyle \frac{\partial L_3}{\partial \varphi_y(r,s)} & \displaystyle \frac{\partial L_3}{\partial \varphi_x(r,s)}\\ +\end{array} +\right] +\end{equation} +\\ +\emph{NB:} in $ISSM$ code, the factor $2$ in the $D$ matrix does not exist since the constitutive relation used is $\sigma'=\mu\varepsilon$ instead of $\sigma'=2\mu\varepsilon$. This changes the viscosity definition that must be multiplied by $2$. + + \subsubsection{Computation of nodal function derivatives} + + +The computation of $\displaystyle \frac{\partial L_i}{\partial \varphi_x(r,s)}$ and $\displaystyle \frac{\partial L_i}{\partial \varphi_y(r,s)}$ is done using the Jacobian of $\varphi$. We have: +\begin{equation} +\left[ +\begin{array}{c} +\displaystyle +\frac{\partial L_i}{\partial \varphi_x(r,s)}\\ +\\ +\displaystyle +\frac{\partial L_i}{\partial \varphi_y(r,s)} +\end{array} +\right] = \left[ +\begin{array}{c c} +\displaystyle +\frac{\partial r}{\partial \varphi_x(r,s)} & \displaystyle \frac{\partial s}{\partial \varphi_x(r,s)}\\ +\\ +\displaystyle +\frac{\partial r}{\partial \varphi_y(r,s)} & \displaystyle \frac{\partial s}{\partial \varphi_y(r,s)}\\ +\end{array} +\right] +\left[ +\begin{array}{c} +\displaystyle +\frac{\partial L_i}{\partial r}\\ +\\ +\displaystyle +\frac{\partial L_i}{\partial s} +\end{array} +\right] +\end{equation} +\\ +The Jacobian of $\varphi$ is: + +\begin{equation} +\left[ J_\varphi\right]= +\left[ +\begin{array}{c c} +\displaystyle +\frac{\partial \varphi_x }{\partial r} & \displaystyle \frac{\partial \varphi_x }{\partial s} \\ +\\ +\displaystyle +\frac{\partial \varphi_y }{\partial r} & \displaystyle \frac{\partial \varphi_y }{\partial s} \\ +\end{array} +\right] +\end{equation} +\\ +We have: $\displaystyle \left[ J_\varphi\right] ^{-1}=\left[ J_{\varphi^{-1}}\right] $. This gives us: + +\begin{equation} +\left[ J_\varphi\right] ^{-1}= +\left[ +\begin{array}{c c} +\displaystyle +\frac{\partial r}{\partial \varphi_x } & \displaystyle \frac{\partial r }{\partial \varphi_y } \\ +\\ +\displaystyle +\frac{\partial s }{\partial \varphi_x } & \displaystyle \frac{\partial s }{\partial \varphi_y } \\ +\end{array} +\right] +\end{equation} +\\ +And finally, we obtain: + +\begin{equation} +\left[ +\begin{array}{c} +\displaystyle +\frac{\partial L_i}{\partial \varphi_x(r,s)}\\ +\\ +\displaystyle +\frac{\partial L_i}{\partial \varphi_y(r,s)} +\end{array} +\right] = \left( \left[ +J +\right]^{-1} \right) ^{T} +\left[ +\begin{array}{c} +\displaystyle +\frac{\partial L_i}{\partial r}\\ +\\ +\displaystyle +\frac{\partial L_i}{\partial s} +\end{array} +\right] +\end{equation} + + + \subsubsection{Basal drag} +This matrix has the following shape: + +\begin{equation} +\begin{array}{l} +\displaystyle +K_{2i-1,2j-1}= +\iint_E %double +\alpha^2 \phi_j \phi_i d\Omega\\ +\\ +\displaystyle +K_{2i-1,2j}= 0\\ +\\ +\displaystyle +K_{2i,2j-1}= 0\\ +\\ +\displaystyle +K_{2i,2j}= +\iint_E %double +\alpha^2 \phi_j \phi_i d\Omega \\ +\end{array} +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix become: + + \begin{equation} +\begin{array}{l l l} +\displaystyle +K_{2i-1,2j-1} & = \displaystyle +\iint_{\hat{E}} %double +\alpha^2 L_j(r,s) L_i(r,s) \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 +w_g \alpha^2 L_j(r_g,s_g) L_i(r_g,s_g) \vert J \vert + \\ +\\ +\displaystyle +K_{2i-1,2j} & = 0 &\\ +\\ +\displaystyle +K_{2i,2j-1} & = 0 &\\ +\\ +\displaystyle +K_{2i,2j} & = \displaystyle +\iint_{\hat{E}} %double +\alpha^2 L_j(r,s) L_i(r,s) \vert J \vert d\hat{S} & +\displaystyle \simeq +\sum_{g=1}^3 +w_g \alpha^2 L_j(r_g,s_g) L_i(r_g,s_g) \vert J \vert + \\ + \\ +\end{array} +\end{equation} +\\ +The values $L_i(r_g,s_g)$ are equal to the component of the area coordinates (ie. for example $L_1(r_2,s_2)=1/6$). This matrix is calculated with three matrices: $\displaystyle K1=\sum_{g=1}^3 [L]^T[D_{drag}][L]$ as follows: +\begin{equation} +[L]= +\left[ +\begin{array}{c c c c c c} +\displaystyle +L_1 & 0 & L_2 & 0 & L_3 & 0 \\ +\\ +0 & L_1 & 0 & L_2 & 0 & L_3 \\ +\end{array} +\right] +\end{equation} +and $D=w_g \alpha^2 \vert J \vert \left[ I_2\right]$ + +\newpage + \subsection{Elementary load vector} +To compute the elementary load vector, we first calculate the force due to the driving stress only, andthen we and to this vector the force on the ice front due to the water pressure. + + \subsubsection{Driving stress} + +The elementary load vector due to driving stress has the following shape: + +\begin{equation} +\begin{array}{l} +\displaystyle +F1_{2i-1}= - +\iint_E %double +\rho g H \frac{\partial s}{\partial x}\phi_i d\Omega\\ + +\\ + +\displaystyle + F1_{2i}= - +\iint_E %double +\rho g H \frac{\partial s}{\partial y}\phi_i dS \\ +\end{array} +\end{equation} +\\ +The slopes $\frac{\partial s}{\partial x}$ and $\frac{\partial s}{\partial y}$ are constant on the element. Using the reference element $\hat{E}$ and the gaussian points, this vector become: + +\begin{equation} +\begin{array}{l l} +\displaystyle +F1_{2i-1}= - +\iint_{\hat{E}} %double +\rho g H \frac{\partial s}{\partial x}L_i(r,s) \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 + - w_g \rho g H \frac{\partial s}{\partial x} L_i(r_g,s_g) \vert J \vert \\ +\\ +\displaystyle +F1_{2i}= - +\iint_{\hat{E}} %double +\rho g H \frac{\partial s}{\partial y}L_i(r,s) \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 + - w_g \rho g H \frac{\partial s}{\partial y} L_i(r_g,s_g) \vert J \vert \\ +\end{array} +\end{equation} + + \subsubsection{Ice front} +The load on the ice front have the following shape: + +\begin{equation} +\begin{array}{l} +\displaystyle +F2_{2i-1}=\int_{E \cup\Gamma}\left( \dfrac{1}{2}\rho g H^2 -\dfrac{1}{2}\rho_w g b^2\right)n_x\phi_i dl\\ +\\ +\displaystyle +F2_{2i}=\int_{E \cup\Gamma} \left( \dfrac{1}{2}\rho g H^2 -\dfrac{1}{2}\rho_w g b^2\right)n_y\phi_i dl\\ +\end{array} +\end{equation} +\\ +Here, the reference element are segment. Using these reference elements $\hat{E}$ and the gaussian points, this vector become: + +\begin{equation*} +\begin{array}{l l l} +\displaystyle +F2_{2i-1} & \displaystyle =\int_{\hat{E} \cup\Gamma} \left( \dfrac{1}{2}\rho g H^2 -\dfrac{1}{2}\rho_w g b^2\right)n_x L_i \vert J \vert d\hat{l} +& +\displaystyle \simeq +\sum_{g=1}^2 +w_g \left( \dfrac{1}{2}\rho g H(r_g)^2 -\dfrac{1}{2}\rho_w g b(r_g)^2\right)n_x L_i(r_g) + \vert J \vert \\ +\\ +\displaystyle +F2_{2i} & \displaystyle =\int_{\hat{E} \cup\Gamma} \left( \dfrac{1}{2}\rho g H^2 -\dfrac{1}{2}\rho_w g b^2\right)n_y L_i \vert J \vert d\hat{l} +& +\displaystyle \simeq +\sum_{g=1}^2 +w_g \left( \dfrac{1}{2}\rho g H(r_g)^2 -\dfrac{1}{2}\rho_w g b(r_g)^2\right)n_y L_i(r_g) + \vert J \vert +\end{array} +\end{equation*} +\newpage + + \subsection{Assembly} +Once an element stiffness matrix or a load vector is computed, it is plugged into the global stiffness matrix or global load vector. That step requires the knowledge of the global degrees of freedom. Indeed, each component of the element stiffness matrix or load vector is initially indexed by local degrees of freedom but each one of these local degrees of freedom is linked to a global degree of freedom. Once an elementary stiffness matrix is computed, each term is added to the corresponding term in the global stiffness matrix depending on the global degrees of freedom involved.\\ +\\ +Let us illustrate this process with Fig.\ref{Assembly}, there are 6 local degrees of freedom for a given triangle of the mesh (3 nodes and two degrees of freedom per node: one for $x$ and another for $y$). The local degree of freedom number $5$ correspond to a global degree of freedom number $809$, and the local degree of freedom number $1$ is the global degree of freedom number $12$. Therefore, the component $Ke_{1,5}$ of the element stiffness matrix must be added to $K_{12,809}$ of the global stiffness matrix. +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{Assembly.png} +\caption{Assembly process} +\label{Assembly} +\end{center} +\end{figure} +After the assembly process, one obtains a global stiffness matrix whose size is $2nods \times 2nods$, but to build the weak formulation, we made the assumption that $\phi$ was kinematically admissible: + +\begin{equation} +\overrightarrow{\phi}(x,y)\in\lbrace \left( H^{1}(\Omega\cup\partial\Omega) \right)^2 \quad \backslash\quad \overrightarrow{\phi}(x,y)=0\qquad (x,y)\in\Gamma_u\rbrace +\end{equation} +\\ +Therefore, all the nodal functions of the nods located on $\Gamma_u$ that we used to build the global stiffness matrix are not kinematically admissible. We must reduce the global stiffness matrix $K_{gg}$ to the final stiffness matrix $K_{ff}$ by erasing all the rows and columns related to these nodal functions. + +\newpage + \subsection{Resolution} +We saw that the velocity on each node could be calculated with $U=K^{-1}F$, but we assumed that the specified velocity $U_s$ of the nodes located on $\Gamma_u$ was $0$. To take into account the fact that the constraint can be different than $0$, the velocity field is calculated as follows: + +\begin{equation} +U_f = [K_{ff}]^{-1} \left( F +K_{fs}U_s \right) +\end{equation} +\\ +Where $f$ stands for "free" and $s$ for "single point constraint". Then, we must add the single point constraints to the vector $U_f$ in order to have the velocity of all the nodes of the domain $U_g$. + + + + + + + + \subsection{Summary} +The computation of the velocity field is not linear since the viscosity depends directly on the solution. The following algorithm is used: an initial viscosity is assumed. Each elementary stiffness matrix and load vector is computed using gauss quadratures. They are then plugged into the global stiffness matrix and global load vector. The global stiffness matrix and load vector are reduced depending on the constraints (The velocity of a constrained node is not computed, the corresponding line and column in the stiffness matrix and load vector must be deleted). Then the velocity field is computed and compared to the one of the previous iteration (for the first iteration, there is no convergence test, a second iteration must be launched). If the convergence criterion is not fulfilled (ei. the results are too different from one another), a new iteration is computed, using the velocity field of the previous iteration to compute the viscosity. +\begin{figure}[H] +\begin{center} +\includegraphics[width=16cm]{Algorithm.png} +\caption{Schematic algorithm used by $ISSM$} +\label{algorithm} +\end{center} +\end{figure} +\newpage + + + + +\section{Pattyn's Higher-order model} + + \subsection{Geometry and notations} +The glacier system is 3d. With the assumptions detailed in the first chapter, we only solve the problem for the horizontal components of velocity and deduce the vertical term from them using the incompressibility. \\ + +\begin{center} +\begin{figure}[H] +\includegraphics[width=15cm]{geometry3D.png} +\caption{Geometry and notations} +\label{geometrypattyn} +\end{figure} +\end{center} +We adopt the following notations: +\begin{itemize} + \item[--] $\Omega$ is the open surface that constitutes the entire glacier system + \item[--] $\partial\Omega$ are the points located at the boundary + \item[--] $\Gamma_i$ are points at the ice front (Ice/Water interface) + \item[--] $\Gamma_s$ are points at the surface of the glacier (Ice/Atmosphere interface $z=s$) + \item[--] $\Gamma_b$ are points at the interface between glacier and bedrock (Ice/Till interface $z=b$) + \item[--] $\Gamma_w$ are points at the interface between glacier and water (Ice/Water interface $z=b$) + \item[--] $\Gamma_u=\partial\Omega\backslash\left(\Gamma_i\cup\Gamma_s\cup\Gamma_b\cup\Gamma_w\right)$ are all other points on the boundary\\ +\end{itemize} + + \subsection{Equations} + +The equations of Pattyn's model are (\ref{Pattyn equations}): +\begin{equation} + \left\{ \begin{array}{l} +\dfrac{\partial }{\partial x} \left(4 \mu \dfrac{\partial u}{\partial x} + 2 \mu \dfrac{\partial v}{\partial y} \right)+ \dfrac{\partial }{\partial y} \left(\mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right) + \dfrac{\partial }{\partial z}\left( \mu \dfrac{\partial u}{\partial z}\right)= \rho g \dfrac{\partial s}{\partial x}\\ +\\ +\dfrac{\partial }{\partial x} \left( \mu \dfrac{\partial u}{\partial y} + \mu \dfrac{\partial v}{\partial x} \right)+ \dfrac{\partial }{\partial y} \left(4 \mu \dfrac{\partial v}{\partial y} + 2 \mu \dfrac{\partial u}{\partial x} \right) + \dfrac{\partial }{\partial z}\left( \mu \dfrac{\partial v}{\partial z}\right)= \rho g \dfrac{\partial s}{\partial y}\\ + \end{array} \right. +\end{equation} +\\ +The boundary conditions are: a dynamic boundary condition (Neumann) at the ice front, a friction law on the ice sheet, and single point constraint (Dirichlet) on the other borders of the domain $\Omega$. +It is more convenient to consider these specified velocities as nill. At the end of the process, the velocity field will be updated to take these +constraints into account. + +\begin{equation} +\left\{ \begin{array}{l l} +\text{Ice Front } \Gamma_i: & \displaystyle \sigma' \overrightarrow{n} = F_i \overrightarrow{n}=\left(\rho_i g \left( s-z\right) + \rho_w g \min\left( 0,z\right) \right) \overrightarrow{n}\\ +\\ +\text{Upper surface } \Gamma_s: & \sigma' \left( \overrightarrow{n}\right) =0\\ +\\ +\text{Ice sheet base } \Gamma_b: & \left(\sigma' \left( \overrightarrow{n}\right)\right)_x = - K^2 N_{eff}^r \|\overrightarrow{v} \|^{s-1} u=-\alpha^2 u\\ +\\ +& \left(\sigma' \left( \overrightarrow{n}\right)\right)_y = - K^2 N_{eff}^r \|\overrightarrow{v} \|^{s-1}v=-\alpha^2 v\\ + +\\ +\text{Ice shelf base } \Gamma_w: & \sigma' \overrightarrow{n} = F_w \overrightarrow{n}= g \left(\rho_i h(x,y) + \rho_w g b(x,y) \right) \overrightarrow{n}\\ +\\ +\text{Other borders } \Gamma_u: & u=v=0\\ +\end{array} \right. +\end{equation} +For the boundary condition on the ice sheet base, we use $r=q/p$ and $s=1/p$ as explained in the first chapter (\ref{friction}) + +\newpage + \subsection{Weak Formulation} + +Now that we have all the equations and boundary conditions, we write the weak formulation to solve these equations +using finite element. We define a kinematically admissible velocity field $\overrightarrow{\phi}$: + +\begin{equation} +\overrightarrow{\phi}(x,y)\in\lbrace \left( H^{1}(\Omega\cup\partial\Omega) \right)^2 \quad \backslash\quad \overrightarrow{\phi}(x,y,z)=0\qquad (x,y,z)\in\Gamma_u\rbrace +\end{equation} +\\ +For any function of this virtual field, we take the scalar product of the equations with $\overrightarrow{\phi}=\left(\phi_x,0 \right) $ and $\overrightarrow{\phi}=\left(0,\phi_y \right) $ that are 2 other kinematically admissible velocity fields, and integrate these products over the domain to obtain: + +\begin{equation*} +\iiint_\Omega %triple +\left[ \frac{\partial}{\partial x} \left(4 \mu \frac{\partial u}{\partial x}+2 \mu\frac{\partial v}{\partial y} \right)\phi_x ++\frac{\partial}{\partial y} \left(\mu \frac{\partial u}{\partial y}+ \mu \frac{\partial v}{\partial x} \right)\phi_x ++ \frac{\partial}{\partial z} \left( \mu \frac{\partial u}{\partial z}\right) \phi_x - \rho g \frac{\partial s}{\partial x}\phi_x \right] d\Omega =0 +\end{equation*} + +\begin{equation*} +\iiint_\Omega %triple +\left[\frac{\partial}{\partial y} \left( 4 \mu \frac{\partial v}{\partial y}+ 2 \mu \frac{\partial u}{\partial x} \right) \phi_y ++\frac{\partial}{\partial x}\left( \mu \frac{\partial u}{\partial y}+\mu \frac{\partial v}{\partial x} \right) \phi_y ++ \frac{\partial}{\partial z} \left( \mu \frac{\partial v}{\partial z}\right) \phi_y -\rho g \frac{\partial s}{\partial y}\phi_y \right] d\Omega =0 +\end{equation*} +\\ +One intergrates by parts the first three terms in order to merge in the force on the ice front $\Gamma_i$, the interface with the bedrock $\Gamma_b$ (ice sheet base) and the interface with the water $\Gamma_w$ (ice shelf base): + +\begin{multline} +\iiint_\Omega %triple +\left( 4 \mu \frac{\partial u}{\partial x}+2 \mu \frac{\partial v}{\partial y}\right) \frac{\partial \phi_x}{\partial x} ++ \left(\mu \frac{\partial u}{\partial y}+\mu \frac{\partial v}{\partial x}\right) \frac{\partial \phi_x }{\partial y} ++ \mu \frac{\partial u}{\partial z} \frac{\partial \phi_x }{\partial z} d\Omega\\ + =\iint_{\Gamma_i\cup \Gamma_b \cup \Gamma_w} F n_x\phi_xd\Gamma - +\iiint_\Omega %triple +\rho g \frac{\partial s}{\partial x}\phi_x d\Omega +\label{FFU Pattyn} +\end{multline} +\begin{multline} +\iiint_\Omega %triple +\left( 4 \mu \frac{\partial v}{\partial y}+2 \mu \frac{\partial u}{\partial x}\right) \frac{\partial \phi_y}{\partial y} ++ \left(\mu \frac{\partial v}{\partial x}+\mu \frac{\partial u}{\partial y}\right) \frac{\partial \phi_y }{\partial x} ++ \mu \frac{\partial v}{\partial z} \frac{\partial \phi_y }{\partial z} d\Omega\\ + =\iint_{\Gamma_i\cup \Gamma_b \cup \Gamma_w}F n_y\phi_yd\Gamma - +\iiint_\Omega %triple +\rho g \frac{\partial s}{\partial y}\phi_y d\Omega +\label{FFV Pattyn} +\end{multline} +It is easier to put the basal friction at the left hand side of the equation since it is velocity dependant. The equations become: + +\begin{multline} +\iiint_\Omega %triple +\left( 4 \mu \frac{\partial u}{\partial x}+2 \mu \frac{\partial v}{\partial y}\right) \frac{\partial \phi_x}{\partial x} ++ \left(\mu \frac{\partial u}{\partial y}+\mu \frac{\partial v}{\partial x}\right) \frac{\partial \phi_x }{\partial y} ++ \mu \frac{\partial u}{\partial z} \frac{\partial \phi_x }{\partial z} d\Omega ++\iint_{\Gamma_b } \alpha^2 u \phi_xd\Gamma\\ + =\iint_{\Gamma_i } F_i n_x\phi_x d\Gamma + +\iint_{\Gamma_w }F_w n_x\phi_yx\Gamma - +\iiint_\Omega %triple +\rho g \frac{\partial s}{\partial x}\phi_x d\Omega +\end{multline} +\begin{multline} +\iiint_\Omega %triple +\left( 4 \mu \frac{\partial v}{\partial y}+2 \mu \frac{\partial u}{\partial x}\right) \frac{\partial \phi_y}{\partial y} ++ \left(\mu \frac{\partial v}{\partial x}+\mu \frac{\partial u}{\partial y}\right) \frac{\partial \phi_y}{\partial x} ++ \mu \frac{\partial v}{\partial z} \frac{\partial \phi_y }{\partial z} d\Omega ++\iint_{\Gamma_b }\alpha^2 v \phi_y d\Gamma\\ + =\iint_{\Gamma_i }F_i n_y\phi_yd\Gamma + +\iint_{\Gamma_w }F_w n_y\phi_yd\Gamma - +\iiint_\Omega %triple +\rho g \frac{\partial s}{\partial y}\phi_y d\Omega +\end{multline} +\newpage + \subsection{Finite element discretisation, Galerkin method} + The domain is meshed using pentahedrons. There are a $nel$ elements and $nods$ grids. We use the nodal functions of each grid, which are continuous on the domain and affine on each element. +We now project the unknows $u$ and $v$ on the nodal functions: +\begin{center} + $(\phi_i)_{1\leq i\leq nods}$ +\end{center} +\begin{equation} +\begin{array}{c} +\displaystyle u\left( x,y,z\right) = \sum_{i=1}^{nods}u_{i}\phi_{i}\left( x,y,z\right) \\ +\\ +\displaystyle v\left( x,y,z\right) = \sum_{i=1}^{nods}v_{i}\phi_{i}\left( x,y,z\right) \\ +\end{array} +\end{equation} +\\ +We build a vector $U$ that holds all the unknows of the velocity field: + +\begin{equation} +U=\left[ \begin{array}{c} +u_{1}\\ +v_{1}\\ +...\\ +u_{nods}\\ +v_{nods}\\ + \end{array} \right] +\end{equation} +\\ +With this new field, we replace the component of the virtual function $\overrightarrow{\phi}$ by the nodal functions: +\begin{center} + $\forall 1 \leq i \leq nods$ +\end{center} +\begin{multline} +\sum_{j=1}^{nods} +\iiint_\Omega %triple + \left( 4 \mu u_j\frac{\partial \phi_j}{\partial x} + 2 \mu v_j\frac{\partial \phi_j}{\partial y}\right)\frac{\partial \phi_i}{\partial x} ++\left( \mu u_j\frac{\partial \phi_j}{\partial y} +\mu v_j \frac{\partial \phi_j}{\partial x} \right)\frac{\partial \phi_i}{\partial y} ++ \mu u_j\frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +d\Omega +\\ ++\iint_{\Gamma_b} \alpha^2 u_j \phi_j \phi_i d\Gamma + = +\iint_{\Gamma_i} F_i n_x\phi_i d\Gamma ++ \iint_{\Gamma_w} F_w n_x\phi_i d\Gamma +- \iiint_\Omega %triple +\rho g \frac{\partial s}{\partial x} \phi_i d\Omega +\end{multline} +\begin{multline} +\sum_{j=1}^{nods} +\iiint_\Omega %triple +\left( \mu u_j\frac{\partial \phi_j}{\partial y} +\mu v_j\frac{\partial \phi_j}{\partial x} \right)\frac{\partial \phi_i }{\partial x} ++\left( 4 \mu v_j\frac{\partial \phi_j}{\partial y} + 2 \mu u_j \frac{\partial \phi_i}{\partial x}\right)\frac{\partial \phi_i }{\partial y} ++ \mu v_j\frac{\partial \phi_j}{\partial z}\frac{\partial \phi_i }{\partial z} +d\Omega +\\ ++\iint_{\Gamma_b} \alpha^2 v_j \phi_j \phi_i d\Gamma + = +\iint_{\Gamma_i} F_i n_y\phi_i d\Gamma ++ \iint_{\Gamma_w} F_w n_y\phi_i d\Gamma +- \iiint_\Omega %triple +\rho g \frac{\partial s}{\partial y} \phi_i d\Omega +\end{multline} +\\ + + +By rearranging terms: +\begin{center} + $\forall 1 \leq i \leq nods$ +\end{center} +\begin{multline} +\sum_{j=1}^{nods} +\iiint_\Omega %triple +\left[ + 4 \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +\right] u_j ++ +\left[ + 2 \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial y} +\right] v_j d\Omega +\\ ++\iint_{\Gamma_b} \alpha^2 u_j \phi_j \phi_i d\Gamma + = +\iint_{\Gamma_i} F_i n_x\phi_i d\Gamma + +\iint_{\Gamma_w} F_w n_x\phi_i d\Gamma +- \iiint_\Omega %triple +\rho g \frac{\partial s}{\partial x} \phi_i d\Omega +\end{multline} +\begin{multline} +\sum_{j=1}^{nods} +\iiint_\Omega %triple +\left[ + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial x} + + 2 \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial y} +\right] u_j ++ +\left[ + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + +4\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +\right] v_j d\Omega +\\ ++\iint_{\Gamma_b} \alpha^2 v_j \phi_j \phi_i d\Gamma + = +\iint_{\Gamma_i} F_i n_y\phi_i d\Gamma + +\iint_{\Gamma_w} F_w n_y\phi_i d\Gamma +- \iiint_\Omega %triple +\rho g \frac{\partial s}{\partial y} \phi_i d\Omega +\end{multline} +\\ +We see the stiffness matrix $K$ and load vector $F$ appearing, so that the previous equations can be written as a matrix form: + +\begin{equation} +\left[ K \right] U =F +\end{equation} +\\ +We use the following index: + +\begin{equation} +\left[ +\begin{array}{c c c c} %K + & \vdots &\vdots &\\ + \cdots & K_{2i-1,2j-1} & K_{2i-1,2j} & \cdots\\ + \cdots & K_{2i,2j-1} & K_{2i,2j} & \cdots\\ + & \vdots &\vdots &\\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +u_j\\ +v_j\\ +\vdots\\ +\end{array} +\right] += +\left[ +\begin{array}{c} %F +\vdots \\ +F_{2j-1}\\ +F_{2j}\\ +\vdots\\ +\end{array} +\right] +\end{equation} +\\ +And we have the following expressions for the stiffness matrix and the load vector : + +\begin{equation} +\begin{array}{l l} +\displaystyle + +K_{2i-1,2j-1} &\displaystyle = +\iiint_\Omega %triple + 4 \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +d\Omega ++\iint_{\Gamma_b} \alpha^2 u_j \phi_j \phi_i d\Gamma \\ +\\ +K_{2i-1,2j} &\displaystyle = +\iiint_\Omega %triple + 2 \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial y} +d\Omega\\ +\\ +K_{2i,2j-1} &\displaystyle = +\iiint_\Omega %triple +2 \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial y} ++ \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial x} +d\Omega\\ +\\ +K_{2i,2i} &\displaystyle = +\iiint_\Omega %triple + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + +4\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +d\Omega ++\iint_{\Gamma_b} \alpha^2 v_j \phi_j \phi_i d\Gamma\\ +\\ +F_{2i-1} &\displaystyle = +\iint_{\Gamma_i} F_i n_x\phi_i d\Gamma + +\iint_{\Gamma_w} F_w n_x\phi_i d\Gamma +- \iiint_\Omega %triple +\rho g \frac{\partial s}{\partial x} \phi_i d\Omega \\ +\\ +F_{2i} &\displaystyle = +\iint_{\Gamma_i} F_i n_y\phi_i d\Gamma + +\iint_{\Gamma_w} F_w n_y\phi_i d\Gamma +- \iiint_\Omega %triple +\rho g \frac{\partial s}{\partial y} \phi_i d\Omega \\ +\\ +\end{array} +\end{equation} + + \subsection{Decomposition over the elements and reference element} + The integrals over $\Omega$ can be divided in several integrals over each elements. To compute the matrices $K$ and $F$, instead of calculating the integral over $\Omega$ directly, we will first calculate the integrales over each element $E$ +of the mesh, that will give us several \emph{Element Matrices}, that will be plugged into the global matrices to get the final Stiffness matrix and load vector.\\ +\\ +One element $E$ gives 12 equations: we can take 6 nodal functions for $\phi_i(x,y,z)$ (the nodal functions corresponding to the vertexes of $E$, which is an pentahedron), each $\phi_i$ gives 2 equations (one for the x-component and one for the y-component). Therefore, an elementary stiffness matrix $K_E$ will be $12 \times 12$, and the elementary load vector will be of size $19$. + +Exactly as in MacAyeal's model, rather than calculating these integrals for each element, one uses a \emph{Reference Element} $\hat{E}$, and a transformation $\varphi$ that transforms the reference element to the element $E$ (See Fig.\ref{hexa}): +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{pentaelem.png} +\caption{Transformation from the reference element, to the current element of the pentahedral mesh} +\label{hexa} +\end{center} +\end{figure} +For any function $f(x,y,z)$, the transformation verifies: + +\begin{equation} +\iiint_E f(x,y,z)dV = \iiint_{\hat{E}} \hat{f}(r,s,\zeta) \vert J \vert d\hat{V} +\end{equation} +\\ +Where $J$ is the Jacobian determinant of the $\varphi$ function. This Jacobian is calculated in section \ref{RE3D}: + +\begin{equation} +J= +\left[ +\begin{array}{c c c} +\displaystyle +\frac{\partial \varphi_x }{\partial r} & \displaystyle \frac{\partial \varphi_x }{\partial s} & \displaystyle \frac{\partial \varphi_x }{\partial \zeta} \\ +\\ +\displaystyle +\frac{\partial \varphi_y }{\partial r} & \displaystyle \frac{\partial \varphi_y }{\partial s} & \displaystyle \frac{\partial \varphi_y }{\partial \zeta} \\ +\\ +\displaystyle +\frac{\partial \varphi_z }{\partial r} & \displaystyle \frac{\partial \varphi_z }{\partial s} & \displaystyle \frac{\partial \varphi_z }{\partial \zeta} \\ +\end{array} +\right] +\end{equation} +\\ +with: + +\begin{equation*} +\begin{array}{c l} +\displaystyle +J_{11}= & \displaystyle + \frac{1}{4}\left( x_1-x_2-x_4+x_5 \right)+ \frac{1}{4}\left( -x_1+x_2-x_4+x_5 \right) \zeta \\ +\\ +J_{21}= & \displaystyle + \frac{1}{4}\left( y_1-y_2-y_4+y_5 \right)+ \frac{1}{4}\left( -y_1+y_2-y_4+y_5 \right) \zeta \\ +\\ +J_{31}= & \displaystyle + \frac{1}{4}\left( z_1-z_2-z_4+z_5 \right)+ \frac{1}{4}\left( -z_1+z_2-z_4+z_5 \right) \zeta \\ +\end{array} +\end{equation*} +\begin{equation} +\begin{array}{c l} +J_{12}= & \displaystyle +\frac{\sqrt{3}}{12} \left( x_1+x_2-2 x_3- x_4- x_5+ 2 x_6 \right)+ \frac{\sqrt{3}}{12} \left( -x_1-x_2+ 2 x_3- x_4- x_5+2 x_6 \right)\zeta\\ +\\ +J_{22}= & \displaystyle +\frac{\sqrt{3}}{12} \left( y_1+y_2-2 y_3- y_4- y_5+ 2 y_6 \right)+ \frac{\sqrt{3}}{12} \left( -y_1-y_2+ 2 y_3- y_4- y_5+2 y_6 \right)\zeta\\ +\\ +J_{32}= & \displaystyle +\frac{\sqrt{3}}{12} \left( z_1+z_2-2 z_3- z_4- z_5+ 2 z_6 \right)+ \frac{\sqrt{3}}{12} \left( -z_1-z_2+ 2 z_3- z_4- z_5+2 z_6 \right)\zeta\\ +\end{array} +\end{equation} +\begin{equation*} +\begin{array}{c l} +J_{31}= & \displaystyle +\frac{1}{4}\left( -x_1+x_2-x_4+x_5 \right) r ++ \frac{\sqrt{3}}{12} \left( -x_1-x_2+ 2 x_3- x_4- x_5+2 x_6 \right)s\\ +\\ +J_{32}= & \displaystyle +\frac{1}{4}\left( -y_1+y_2-y_4+y_5 \right) r ++ \frac{\sqrt{3}}{12} \left( -y_1-y_2+ 2 y_3- y_4- y_5+2 y_6 \right)s\\ +\\ +J_{33}= & \displaystyle +\frac{1}{4}\left( -z_1+z_2-z_4+z_5 \right) r ++ \frac{\sqrt{3}}{12} \left( -z_1-z_2+ 2 z_3- z_4- z_5+2 z_6 \right)s\\ +\\ +\end{array} +\end{equation*} +\\ +Now, we have all the tools to calculate the integrals over the reference element instead of the element itself. +Since $ISSM$ is a Matlab code, the integrals cannot be calculated directly. The numerical integration uses a gaussian quadrature to approximate the integral as a weighted sum of function values at specified points (gaussian points) within the domain: + +\begin{equation} +\iiint_E f(x,y,z)dV = \iint_{\hat{E}} \hat{f}(r,s,\zeta) \vert J\vert d\hat{V} \simeq \sum_{g=1}^{n} W_g \hat{f}(r_g,s_g,\zeta_g) +\end{equation} +\\ +where $W_i$ are the quadrature rules weights and $(r_g,s_g,\zeta_g)$ are the evaluation points, $g=1,2...,n$. The integration points are given with their area coordinates: + +\begin{equation} +\displaystyle (r_g,s_g,\zeta_g)\equiv (\frac{A_1}{A},\frac{A_2}{A},\frac{A_3}{A},\zeta_g) +\end{equation} +\begin{figure}[H] +\begin{center} +\includegraphics[width=9cm]{barycentric_penta.png} +\caption{Area coordinates} +\end{center} +\end{figure} + +The number of gaussian points depends on the order of integration. The order of integration can be computed from the polynomial degree $p$ that needs to be integrated. The formula is: + +\begin{equation} +order=\frac{p+1}{2} +\end{equation} +\\ +Here, the degree of the polynome under the integral is $2$ (the drag implies the calculation of $\phi_j \phi_i$ whose degree is 2). The order of integration is hence 2 (the order must be an integer). For this order, $6$ gaussian points are required (See in $ISSM$ code $GaussPenta.m$ for more details). + +\newpage + \subsection{Elementary stiffness matrix} +To compute the elementary stiffness matrix, we first remove the basal drag, that will create a first elementary stiffness matrix $K1$, the basal drag will constitute another stiffness matrix $K2$. The elementary stiffness matrix will be the sum of $K1$ and $K2$ ($K_E=K1+K2$). + + \subsubsection{Without basal drag} + +This matrix has the following shape: + +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation} +\begin{array}{l} +\displaystyle +K1_{2i-1,2j-1}= +\iiint_E %triple + \left( 4 \mu \frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_{j}}{\partial z} \frac{\partial \phi_i}{\partial z}\right)d\Omega\\ + +\\ + +\displaystyle +K1_{2i-1,2j}= +\iiint_E %triple +\left( 2 \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial x} + +\mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial y} \right) d\Omega \\ + +\\ + +\displaystyle +K1_{2i,2j-1}= +\iiint_E %triple + \left( 2 \mu \frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_{j}}{\partial y} \frac{\partial \phi_i}{\partial x} \right) d\Omega\\ + +\\ + +\displaystyle +K1_{2i,2j}= +\iiint_E %triple +\left( 4 \mu \frac{\partial \phi_{j}}{\partial y}\frac{\partial \phi_i }{\partial y} + +\mu\frac{\partial \phi_{j}}{\partial x} \frac{\partial \phi_{i}}{\partial x} ++ \mu\frac{\partial \phi_{j}}{\partial z} \frac{\partial \phi_{i}}{\partial z} \right) d\Omega \\ +\end{array} +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix becomes: +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\medskip +\begin{equation*} +\begin{array}{c l} +\displaystyle +K1_{2i-1,2j-1} & \displaystyle = +\iiint_{\hat{E}} %triple + \left( 4 \mu \frac{\partial L_{j}}{\partial \varphi_x} \frac{\partial L_i}{\partial \varphi_x} + + \mu \frac{\partial L_{j}}{\partial \varphi_y} \frac{\partial L_i}{\partial \varphi_y} + + \mu \frac{\partial L_{j}}{\partial \varphi_z} \frac{\partial L_i}{\partial \varphi_z} \right) \vert J \vert d\hat{V} \\ + \\ +& \displaystyle \simeq +\sum_{g=1}^6 W_g \left( 4 \mu \left.\frac{\partial L_{j}}{\partial \varphi_x}\right|_g \left.\frac{\partial L_i}{\partial \varphi_x} \right|_g + + \mu \left.\frac{\partial L_{j}}{\partial \varphi_y}\right| _g \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g + + \mu \left.\frac{\partial L_{j}}{\partial \varphi_z} \right|_g \left. \frac{\partial L_i}{\partial \varphi_z}\right|_g \right) \vert J_g \vert \\ + +\\ + +\displaystyle +K1_{2i-1,2j} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( 2 \mu \frac{\partial L_{j}}{\partial \varphi_y}\frac{\partial L_i }{\partial \varphi_x} + + \mu\frac{\partial L_{j}}{\partial \varphi_x} \frac{\partial L_{i}}{\partial \varphi_y} \right) \vert J \vert d\hat{V} \\ +\\ +& \displaystyle \simeq +\sum_{g=1}^6 W_g +\left( 2 \mu \left. \frac{\partial L_{j}}{\partial \varphi_y}\right|_g \left. \frac{\partial L_i }{\partial \varphi_x}\right|_g + + \mu\left.\frac{\partial L_{j}}{\partial \varphi_x}\right|_g \left. \frac{\partial L_{i}}{\partial \varphi_y} \right|_g \right) \vert J_g \vert\\ +\\ + +\\ + +\displaystyle +K1_{2i,2j-1} & \displaystyle = +\iiint_{\hat{E}} %triple + \left( 2 \mu \frac{\partial L_{j}}{\partial \varphi_x} \frac{\partial L_i}{\partial \varphi_y} + + \mu \frac{\partial L_{j}}{\partial \varphi_y} \frac{\partial L_i}{\partial \varphi_x} \right) \vert J \vert d\hat{V} \\ + \\ +& \displaystyle \simeq +\sum_{g=1}^6 W_g +\left( 2 \mu \left.\frac{\partial L_{j}}{\partial \varphi_x}\right|_g \left. \frac{\partial L_i}{\partial \varphi_y} \right|_g + + \mu \left.\frac{\partial L_{j}}{\partial \varphi_y}\right|_g \left. \frac{\partial L_i}{\partial \varphi_x}\right|_g \right) \vert J_g \vert\\ +\\ + +\\ + +\displaystyle +K1_{2i,2j} & \displaystyle = +\iiint_{\hat{E}} %triple +\left( 4 \mu \frac{\partial L_{j}}{\partial \varphi_y}\frac{\partial L_i }{\partial \varphi_y} + + \mu\frac{\partial L_{j}}{\partial \varphi_x} \frac{\partial L_{i}}{\partial \varphi_x} ++ \mu\frac{\partial L_{j}}{\partial \varphi_z} \frac{\partial L_{i}}{\partial \varphi_z} \right) \vert J \vert d\hat{V} \\ +\\ +& \displaystyle \simeq +\sum_{g=1}^6 W_g +\left( 4 \mu \left.\frac{\partial L_{j}}{\partial \varphi_y}\right|_g \left.\frac{\partial L_i }{\partial \varphi_y}\right|_g + + \mu\left.\frac{\partial L_{j}}{\partial \varphi_x}\right|_g \left. \frac{\partial L_{i}}{\partial \varphi_x}\right|_g ++ \mu\left.\frac{\partial L_{j}}{\partial \varphi_z}\right|_g \left. \frac{\partial L_{i}}{\partial \varphi_z}\right|_g \right) \vert J_g \vert\\ +\\ +\end{array} +\end{equation*} +\\ +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K1= \sum_{g=1}^6 [B]^T[D][B']$ as follows: + +\begin{equation} +[B]=\left[\begin{array}{c c c c c c} +B_1 & B_2 & B_3 & B_4 & B_5 & B_6 +\end{array}\right] +\quad and \quad +[B']=\left[\begin{array}{c c c c c c} +B'_1 & B'_2 & B'_3 & B'_4 & B'_5 & B'_6 +\end{array}\right] +\end{equation} +\\ +with: + +\begin{equation} +[B_i]= +\left[ +\begin{array}{c c} +\displaystyle +\left. \frac{\partial L_i}{\partial \varphi_x}\right|_g & 0\\ +\\ +\displaystyle +0 &\displaystyle \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g \\ +\\ +\displaystyle +\frac{1}{2} \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & \displaystyle \frac{1}{2} \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g \\ +\\ +\displaystyle +\frac{1}{2} \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & 0\\ +\\ +\displaystyle +0 & \displaystyle \frac{1}{2} \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g \\ +\end{array} +\right]\\ +\quad \quad +[B'_i]= +\left[ +\begin{array}{c c} +\displaystyle +2 \left.\frac{\partial L_i}{\partial \varphi_x} \right|_g & \displaystyle \left. \frac{\partial L_i}{\partial \varphi_y} \right|_g\\ +\\ +\displaystyle \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g & \displaystyle 2\left.\frac{\partial L_i}{\partial \varphi_y}\right|_g \\ + \\ +\displaystyle \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g\\ + \\ +\displaystyle \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & 0 \\ + +\displaystyle 0 & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g \\ +\end{array} +\right]\\ +\end{equation} +\\ +and $D=W_g 2 \mu \vert J_g \vert \left[I_5\right] $ +\\ + \\ +\emph{NB:} in $ISSM$ code, the factor $2$ in the $D$ matrix does not exist since the constitutive relation used is $\sigma'=\mu\varepsilon$ instead of $\sigma'=2\mu\varepsilon$. This changes the viscosity definition that must be multiplied by $2$. + \subsubsection{Basal drag} +Basal drag get involved only for the nods on the ice/bedrock interface. Thus, only surface integrals are required. The elements are triangles and there are only 3 nodal functions to take into account. Therefore, the stiffness matrix that stands for basal drag is $6 \times 6$.\\ +The basal drag matrix has the following shape: + +\begin{center} + $1 \leq i \leq 3$ and $1 \leq j \leq 3$ +\end{center} +\medskip +\begin{equation} +\begin{array}{l} +\displaystyle +K_{2i-1,2j-1}= +\iint_{E\cap \Gamma_b} %double + \alpha^2 \phi_j \phi_i dS\\ +\\ +\displaystyle +K_{2i-1,2j}= 0\\ +\\ +\displaystyle +K_{2i,2j-1}= 0\\ +\\ +\displaystyle +K_{2i,2j}= +\iint_{E \cap \Gamma_b} %double +\alpha^2 \phi_j \phi_i dS \\ +\end{array} +\end{equation} +\\ +This time, the reference element are triangles, as in MacAyeal's model. Using the reference element $\hat{E}$ and the gaussian points, this matrix become: + + \begin{equation} +\begin{array}{l l l} +\displaystyle +K_{2i-1,2j-1} & = +\displaystyle \iint_{\hat{E}\cap \hat{\Gamma_b}} %double +\alpha^2 L_j(r,s) L_i(r,s) \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 +W_g \alpha^2 L_j(r_g,s_g) L_i(r_g,s_g) \vert J_g \vert + \\ +\\ +\displaystyle +K_{2i-1,2j} & = 0 &\\ +\\ +\displaystyle +K_{2i,2j-1} & = 0 &\\ +\\ +\displaystyle +K_{2i,2j} & = +\displaystyle \iint_{\hat{E}\cap \hat{\Gamma_b}} %double +\alpha^2 L_j(r,s) L_i(r,s) \vert J \vert d\hat{S} & +\displaystyle \simeq +\sum_{g=1}^3 +W_g \alpha^2 L_j(r_g,s_g) L_i(r_g,s_g) \vert J_g \vert + \\ + \\ +\end{array} +\end{equation} +\\ +This matrix is calculated with three matrices: $\displaystyle K1=\sum_{g=1}^3 [L]^T[D_{drag}][L]$ as follows: +\begin{equation} +[L]= +\left[ +\begin{array}{c c c c c c c} +\displaystyle +L_1(r_g,s_g) & 0 & L_2(r_g,s_g) & 0 & L_3(r_g,s_g) & 0 \\ +\\ +0 & L_1(r_g,s_g) & 0 & L_2(r_g,s_g) & 0 & L_3(r_g,s_g) \\ +\end{array} +\right] +\end{equation} +and $\left[D_{drag} \right]=W_g \alpha^2 \vert J_g \vert \left[ I_{6} \right]$ + + + \subsection{Elementary load vector} +To compute the elementary load vector, we first calculate the force due to the driving stress only, the water pressure only, and we then add these two terms. + + \subsubsection{Driving stress} + +The elementary load vector due to driving stress has the following shape: + +\begin{equation} +\begin{array}{l} +\displaystyle +F1_{2i-1}= - +\iiint_{E} %triple +\rho g \frac{\partial s}{\partial x}\phi_i d\Omega\\ + +\\ + +\displaystyle + F1_{2i}= - +\iiint_E %triple +\rho g \frac{\partial s}{\partial y}\phi_i d\Omega \\ +\end{array} +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector become: + +\begin{equation} +\begin{array}{l l} +\displaystyle +F1_{2i-1}= - +\iiint_{\hat{E}} %triple +\rho g \frac{\partial s}{\partial x}L_i(r,s,\zeta) \vert J \vert d\hat{\Omega} +& +\displaystyle \simeq +\sum_{g=1}^6 + - W_g \rho g \frac{\partial s}{\partial x} L_i(r_g,s_g,\zeta_g) \vert J_g \vert \\ +\\ +\displaystyle +F1_{2i}= - +\iiint_{\hat{E}} %triple +\rho g \frac{\partial s}{\partial y}L_i(r,s,\zeta) \vert J \vert d\hat{\Omega} +& +\displaystyle \simeq +\sum_{g=1}^6 + - W_g \rho g \frac{\partial s}{\partial y} L_i(r_g,s_g,\zeta_g) \vert J_g \vert \\ +\end{array} +\end{equation} + + \subsubsection{Ice front} +The load on the ice front involves only the nodes on the ice/sea interface. As with basal drag, only surface integrals are required. The elements are quadrangle (See section\ref{RE2D2}). The load on the ice front have the following shape: + +\begin{equation} +\begin{array}{l} +\displaystyle +F2_{2i-1}=\iint_{E \cap \Gamma_i} F_i n_x\phi_i dS\\ +\\ +\displaystyle +F2_{2i}=\iint_{E \cap\Gamma_i} F_i n_y\phi_i dS\\ +\end{array} +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector become: + +\begin{equation} +\begin{array}{l l l} +\displaystyle +F2_{2i-1} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_i}} \hat{F_i} n_x L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^4 +W_g \left( \rho_i g\left(s-z \right)+\rho_w g \min\left( 0,z\right) \right)n_x L_i(r_g,s_g,\zeta_g) \vert J_g \vert \\ +\\ +\displaystyle +F2_{2i} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_i}} \hat{F_i} n_y L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^4 +W_g \left( \rho_i g\left(s-z \right)+\rho_w g \min\left( 0,z\right) \right)n_y L_i(r_g,s_g,\zeta_g) \vert J_g \vert \\ +\end{array} +\end{equation} + + \subsubsection{Ice/water interface} +The load on the ice/water interface involves only the nodes at the base on the iceshelf. As with basal drag and ice front, only surface integrals are required. The elements are triangles. The load on the ice shelf base have the following shape: + +\begin{equation} +\begin{array}{l} +\displaystyle +F3_{2i-1}=\iint_{E \cap \Gamma_w} F_w n_x\phi_i dS\\ +\\ +\displaystyle +F3_{2i}=\iint_{E \cap\Gamma_w} F_w n_y\phi_i dS\\ +\end{array} +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector become: + +\begin{equation} +\begin{array}{l l l} +\displaystyle +F3_{2i-1} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_w}} \hat{F_w} n_x L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 +W_g g\left( \rho_i h(r_g,s_g) + \rho_w b(r_g,s_g) \right)n_x L_i(r_g,s_g) \vert J_g \vert \\ +\\ +\displaystyle +F3_{2i} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_w}} \hat{F_w} n_y L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 +W_g g\left( \rho_i h(r_g,s_g) + \rho_w b(r_g,s_g) \right)n_y L_i(r_g,s_g) \vert J_g \vert \\ +\end{array} +\end{equation} + +\newpage +\section{Vertical Velocity computation} + \subsection{Equations} + +In the first chapter, we saw that we used the incompressibility to calculate the vertical component of the velocity: + +\begin{equation} +\dfrac{\partial w}{\partial z}=-\dfrac{\partial u}{\partial x}-\dfrac{\partial v}{\partial y} +\label{verticalequation} +\end{equation} +\\ +The boundary condition on the lower surface is $w=w_b$ with (see (\ref{basalvelocity})): + +\begin{equation} +w_b = u \frac{\partial b}{\partial x}+v \frac{\partial b}{\partial y} - \frac{\rho_w }{\rho_i } \left( - div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right) \right) +\end{equation} + + + \subsection{Basal velocity formulation} + + \subsubsection{Basal velocity weak formulation} +As usual, We define a kinematically admissible velocity field $\phi$: + +\begin{equation} +\phi(x,y,z)\in\lbrace H^{1}(\Omega\cup\partial\Omega) \rbrace +\end{equation} +\\ +If one integrates the product of the equation (\ref{verticalequation}) by a kinematically admissible velocity field: +\begin{equation} +\begin{array}{r c l} +\displaystyle \iint_{\Gamma_b\cup\Gamma_w} w_b \phi d\Gamma & += & +\displaystyle \iint_{\Gamma_b\cup\Gamma_w} u \frac{\partial b}{\partial x} \phi +v \frac{\partial b}{\partial y} \phi d\Gamma ++\iint_{\Gamma_b} -\dot{M_b} \phi d\Gamma \\ +\\ +&& +\displaystyle +\iint_{\Gamma_w} - \frac{\rho_w }{\rho_i } \left( - div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right) \right) \phi - \frac{\rho_w }{\rho_i } \dot{M_a} \phi +\left( \frac{\rho_w }{\rho_i } -1\right) \dot{M_b} \phi d\Gamma +\end{array} +\end{equation} + + \subsubsection{Elementary stiffness matrix and load vector} +Following the same method as in the previous situations, we obtain the stiffness matrix as follows: + +\begin{equation} +\begin{array}{l c l} +\displaystyle K_{i,j} &\displaystyle = & +\displaystyle \iint_{\Gamma_b\cup\Gamma_w} \phi_j \phi_i d\Gamma \\ +\\ +F_{i} &\displaystyle = & +\displaystyle \iint_{\Gamma_b\cup\Gamma_w} u \frac{\partial b}{\partial x} \phi_i +v \frac{\partial b}{\partial y} \phi_i d\Gamma ++\iint_{\Gamma_b} -\dot{M_b} \phi_i d\Gamma \\ +\\ +&& \displaystyle ++\iint_{\Gamma_w} - \frac{\rho_w }{\rho_i } \left( - div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right) \right) \phi_i - \frac{\rho_w }{\rho_i } \dot{M_a} \phi_i +\left( \frac{\rho_w }{\rho_i } -1\right) \dot{M_b} \phi_i d\Gamma +\end{array} +\end{equation} +We now decompose these two matrices over the reference elements and use gaussian points for the integration : + +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation} +\begin{array}{c l} +\displaystyle +K_{i,j} & \displaystyle = +\iint_{\hat{E}} L_j L_i \vert J \vert d\hat{\Gamma}\\ +\\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g L_j(g) L_i(g) \vert J_g \vert +\end{array} +\end{equation} +\\ +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K1= \sum_{g=1}^3 [B]^T[D][B]$ as follows: + +\begin{equation} +[B]=\left[\begin{array}{c c c} +B_1 & B_2 & B_3 +\end{array}\right] \quad \text{and} \quad D=W_g \vert J_g \vert +\end{equation} +with: +\begin{equation} +B_i= L_i(g ) +\end{equation}\\ + +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\medskip +\begin{equation} +\begin{array}{l c l} +\displaystyle +F_{i} & \displaystyle = & \displaystyle +\iint_{\hat{E}} u \frac{\partial b}{\partial x} L_i +v \frac{\partial b}{\partial y} L_i \vert J \vert d\hat{\Gamma} ++\iint_{\hat{E}\cap\Gamma_b} -\dot{M_b} L_i \vert J \vert d\Gamma \\ +\\ +&& \displaystyle ++\iint_{\hat{E}\cap\Gamma_w} - \frac{\rho_w }{\rho_i } \left( - div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right) \right) L_i - \frac{\rho_w }{\rho_i } \dot{M_a} L_i +\left( \frac{\rho_w }{\rho_i } -1\right) \dot{M_b} L_i \vert J \vert d\Gamma\\ +\\ +& \displaystyle \simeq & \displaystyle +\sum_{g=1}^3 u \frac{\partial b}{\partial x} L_i(g) +v \frac{\partial b}{\partial y} L_i (g) \vert J_g \vert ++\underbrace{\sum_{g=1}^3 -\dot{M_b} L_i(g) \vert J_g \vert)}_{\text{ice shelf}}\\ +\\ +&& \displaystyle ++\sum_{g=1}^3 - \frac{\rho_w }{\rho_i } \left( - div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right]\right) \right) L_i(g) - \frac{\rho_w }{\rho_i } \dot{M_a} L_i(g) +\underbrace{\left( \frac{\rho_w }{\rho_i } -1\right) \dot{M_b} L_i(g) \vert J_g \vert}_{\text{ice sheet}} +\end{array} +\end{equation} + + + + + + + + + + + + + + + + + + + + + \subsection{Vertical velocity weak formulation} +As usual, We define a kinematically admissible velocity field $\phi$: + +\begin{equation} +\phi(x,y,z)\in\lbrace H^{1}(\Omega\cup\partial\Omega) \quad \backslash\quad \phi(x,y,z)=0\qquad (x,y,z)\in \Gamma_b \rbrace +\end{equation} +\\ +If one integrates the product of the equation (\ref{verticalequation}) by a kinematically admissible velocity field: + +\begin{equation} +\iiint_\Omega \dfrac{\partial w}{\partial z}\phi d\Omega += +- \iiint_\Omega +\dfrac{\partial u}{\partial x}\phi + \dfrac{\partial v}{\partial y}\phi d\Omega +\end{equation} +\\ +One can integrate by parts the left handside of the previous equation: + +\begin{equation} +\iiint_\Omega w \dfrac{\partial \phi}{\partial z} d\Omega += +\iiint_\Omega +\dfrac{\partial u}{\partial x}\phi + \dfrac{\partial v}{\partial y}\phi d\Omega + +\iiint_{\partial\Omega } +w\phi n_z dS +\end{equation} +\\ +Where $\overrightarrow{n}=( n_x, n_y, n_z)$ is the unit normal vector pointing outward from the glacier. Since we work on a vertically extruded mesh, $n_z$ is equal to zero except on the upper and lower surface $\Gamma_b \cup \Gamma_s$. The function $\phi$ is cinematically admissible and is hence equal to zero on the lower surface $\Gamma_b$: + +\begin{equation} +\iiint_\Omega w \dfrac{\partial \phi}{\partial z} d\Omega += +\iiint_\Omega +\dfrac{\partial u}{\partial x}\phi + \dfrac{\partial v}{\partial y}\phi d\Omega + +\iint_{\Gamma_s} +w\phi n_z dS +\end{equation} +\\ +The term $\displaystyle \iint_{ \Gamma_s} w\phi n_z dS$ is unknown. Therefore, we put it in the left handside of the weak formulation: + +\begin{equation} +\iiint_\Omega w \dfrac{\partial \phi}{\partial z} d\Omega +- +\iint_{\Gamma_s} +w\phi n_z dS += +\iiint_\Omega +\dfrac{\partial u}{\partial x}\phi + \dfrac{\partial v}{\partial y}\phi d\Omega +\end{equation} + + \subsection{Finite element discretisation, Galerkin method} +The domain is meshed using pentahedrons. There are a $nel$ elements and $nods$ grids. We use the nodal functions of each grid, which are continuous on the domain and affine on each element. +We now project the unknown $w$ on the nodal functions: +\begin{center} + $(\phi_i)_{1\leq i\leq nods}$ +\end{center} +\begin{equation} +w\left( x,y,z\right) = \sum_{i=1}^{nods}w_{i}\phi_{i}\left( x,y,z\right) \\ +\end{equation} +\\ +We build a vector $W$ that holds all the unknows of the velocity field: + +\begin{equation} +U=\left[ \begin{array}{c} +w_{1}\\ +...\\ +w_{nods} + \end{array} \right] +\end{equation} +\\ +With this new field, we replace the component of the virtual function $\phi$ by the nodal functions: +\begin{center} + $\forall 1 \leq i \leq nods$ +\end{center} +\begin{equation} +\sum_{j=1}^{nods} +\iiint_\Omega w_j \phi_j \dfrac{\partial \phi_i}{\partial z} d\Omega +- +\iint_{\Gamma_s} +w_j \phi_j\phi_i n_z dS += +\iiint_\Omega +\dfrac{\partial u}{\partial x}\phi_i + \dfrac{\partial v}{\partial y}\phi_i d\Omega +\end{equation} +\\ +We see the stiffness matrix $K$ and load vector $F$ appearing, so that the previous equations can be written as a system matrix : + +\begin{equation} +\left[ K \right] W =F +\end{equation} +\\ +We use the following index: + +\begin{equation} +\left[ +\begin{array}{c c c} %K + & \vdots &\\ + \cdots & K & \cdots\\ + & \vdots &\\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +w_j\\ +\vdots\\ +\end{array} +\right] += +\left[ +\begin{array}{c} %F +\vdots \\ +F_{j}\\ +\vdots\\ +\end{array} +\right] +\end{equation} +\\ +And we have the following expressions for the stiffness matrix and the load vector : + +\begin{equation} +\begin{array}{l l} +\displaystyle + +K_{i,j} &\displaystyle = +\iiint_\Omega \phi_j \dfrac{\partial \phi_i}{\partial z} d\Omega +- +\iint_{\Gamma_s} +\phi_j \phi_i n_z dS\\ +\\ +F_{i} &\displaystyle = +\iiint_\Omega +\dfrac{\partial u}{\partial x}\phi_i + \dfrac{\partial v}{\partial y}\phi_i d\Omega +\end{array} +\end{equation} + + + \subsection{Elementary stiffness matrix} +To compute the elementary stiffness matrix, we first remove the integral over the upper surface, that will create a first elementary stiffness matrix $K1$, the upper surface integral will constitute another stiffness matrix $K2$. The elementary stiffness matrix will be the sum of $K1$ and $K2$ ($K_E=K1+K2$). + + \subsubsection{Without the upper surface} + +This matrix has the following shape: + +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation} +\displaystyle +K1_{i,j}= +\iiint_E \phi_j \dfrac{\partial \phi_i}{\partial z} dV +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix becomes: +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\medskip +\begin{equation} +\begin{array}{c l} +\displaystyle +K1_{i,j} & \displaystyle = +\iiint_{\hat{E}} L_j \dfrac{\partial L_i}{\partial \varphi_z} \vert J \vert d\hat{V}\\ +\\ +& \displaystyle \simeq +\sum_{g=1}^6 W_g L_j(g) \left.\dfrac{\partial L_i}{\partial \varphi_z}\right| _g \vert J_g \vert +\end{array} +\end{equation} +\\ +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K1= \sum_{g=1}^6 [B]^T[D][B']$ as follows: + +\begin{equation} +[B]=\left[\begin{array}{c c c c c c} +B_1 & B_2 & B_3 & B_4 & B_5 & B_6 +\end{array}\right] +\quad \text{and} \quad +[B']=\left[\begin{array}{c c c c c c} +B'_1 & B'_2 & B'_3 & B'_4 & B'_5 & B'_6 +\end{array}\right] +\end{equation} +with: +\begin{equation} +B_i= \left.\dfrac{\partial L_i}{\partial \varphi_z}\right| _g +\quad \quad +B'_i= L_i(g) +\end{equation} +\\ +and $D=W_g \vert J_g \vert$ + + \subsubsection{Upper surface integral} +The upper surface involves only the three upper nods on the top of the upper pentahedrons of the mesh (which are the last three grids of the pentahedron grids lists). The elements are triangles and there are only 3 nodal functions to take into account. Therefore, this stiffness matrix is $3 \times 3$.\\ +The basal drag matrix has the following shape: + +\begin{center} + $4 \leq i \leq 6$ and $4 \leq j \leq 6$ +\end{center} +\begin{equation} +\displaystyle +K2_{i,j}= +- +\iint_{E\cup\Gamma_s} +\phi_j \phi_i n_z dS +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix becomes: +\begin{center} + $4 \leq i \leq 6$ and $4 \leq j \leq 6$ +\end{center} +\medskip +\begin{equation} +\begin{array}{c l} +\displaystyle +K2_{i,j} & \displaystyle = +-\iiint_{\hat{E}\cup \Gamma_s} L_j(g)Li(g) \vert J \vert d\hat{S}\\ +\\ +& \displaystyle \simeq +-\sum_{g=1}^6 W_g L_j(g)L_i(g) \vert J_g \vert +\end{array} +\end{equation} +\\ +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K1= \sum_{g=1}^6 [L]^T[D][L]$ as follows: + +\begin{equation} +[L]=\left[\begin{array}{c c c} +L_4 & L_5 & L_6 +\end{array}\right] +\end{equation} +\\ +with: + +\begin{equation} +L_i= Li(g) +\end{equation} +\\ +and $D=-W_g \vert J_g \vert$ + + \subsection{Elementary load vector} +The elementary load vector has the following shape: + +\begin{equation} +F_{i} = +\iiint_E \dfrac{\partial}{\partial x}\left( \sum_{k=1}^6 u_k \phi_k \right) \phi_i + \dfrac{\partial}{\partial y}\left( \sum_{k=1}^6 v_k \phi_k \right)\phi_i dV +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix becomes: +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\medskip +\begin{equation} +\begin{array}{c l} +\displaystyle +F_{i} & \displaystyle = +\iiint_{\hat{E}} \dfrac{\partial}{\partial \varphi_x}\left( \sum_{k=1}^6 u_k L_k \right)L_i ++ \dfrac{\partial}{\partial \varphi_y} \left( \sum_{k=1}^6 v_k L_k \right)L_i d\hat{V} +\\ +& \displaystyle \simeq +\sum_{g=1}^6 \left( \left.\dfrac{\partial}{\partial \varphi_x}\left( \sum_{k=1}^6 u_k L_k \right)\right| _gL_i(g) ++ \left.\dfrac{\partial}{\partial \varphi_y} \left( \sum_{k=1}^6 v_k L_k \right)\right| _g L_i(g)\right) \vert J_g \vert +\end{array} +\end{equation} + + + + + + + + + + + + + + + + + + + + +\newpage + \section{Full Stokes Model} + \label{stokessection} + + \subsection{Geometry and notations} + +The geometry is exactly the same as in Pattyn's model. + \subsection{Equations} + +In the first chapter, we had: + +\begin{equation} +\begin{array}{c} + \left\{ \begin{array}{l} +\displaystyle \frac{\partial}{\partial x} \left( 2 \mu \frac{\partial u}{\partial x} \right) ++\frac{\partial}{\partial y} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial u}{\partial z} +\mu \frac{\partial w}{\partial x} \right) +-\frac{\partial P}{\partial x}=0\\ +\\ +\displaystyle \frac{\partial}{\partial x} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial y} \left( 2 \mu \frac{\partial v}{\partial y} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial v}{\partial z} +\mu \frac{\partial w}{\partial y} \right) +-\frac{\partial P}{\partial y}=0\\ +\\ +\displaystyle \frac{\partial}{\partial x} \left( \mu \frac{\partial u}{\partial z} +\mu \frac{\partial w}{\partial x} \right) ++\frac{\partial}{\partial y} \left( \mu \frac{\partial v}{\partial z} +\mu \frac{\partial w}{\partial y} \right) ++\frac{\partial}{\partial z} \left( 2 \mu \frac{\partial w}{\partial z} \right) +-\frac{\partial P}{\partial z} - \rho g=0\\ + \end{array} \right. + \\ + \\ +\displaystyle \frac{\partial u}{\partial x}+\frac{\partial v}{\partial y}+\frac{\partial w}{\partial z}=0 +\end{array} +\end{equation} +\\ +The boundary conditions are: + a dynamic boundary condition (Neumann) at the ice front, a friction law on the ice sheet, and single point constraint (Dirichlet) on the other borders of the domain $\Omega$. +Exactly as in Pattyn's formulation, it is more convenient to consider these specified velocities as nill. For the vertical basal velocity, we use a multiple points constraint. This process, similar to a pemalty method, is explained in section \ref{stokespenaltiessection}. + +\begin{equation} +\left\{ \begin{array}{l l} +\text{Ice Front } \Gamma_i: & \displaystyle \sigma \overrightarrow{n} = F_i \overrightarrow{n}= \rho_w g \min\left( 0,z\right) \overrightarrow{n}\\ +\\ +\text{Upper surface } \Gamma_s: & \sigma \left( \overrightarrow{n}\right) =0\\ +\\ +\text{Ice sheet base } \Gamma_b: & \left( \sigma \left( \overrightarrow{n}\right)\right)_x + p\;n_x= -K^2 N_{eff}^r \|\overrightarrow{v} \|^{s-1} u =-\alpha^2 u \\ +\\ +& \left( \sigma \left( \overrightarrow{n}\right)\right)_y + p\;n_y= -K^2 N_{eff}^r \|\overrightarrow{v} \|^{s-1} v =-\alpha^2 v \\ +\\ +& \displaystyle w=0\\ +\\ +\text{Ice shelf base } \Gamma_w: & \sigma \overrightarrow{n} = F_w \overrightarrow{n}= \rho_w g b(x,y) \overrightarrow{n}\\ +\\ +\text{Other borders } \Gamma_u: & u=v=w=0\\ +\end{array} \right. +\end{equation} + + \subsection{Weak Formulation} + +we write the weak formulation to solve these equations +using finite element method. We define a kinematically admissible velocity field $\overrightarrow{\phi}$ and pressure field $P^*$ such that: + +\begin{equation} +\overrightarrow{\phi}(x,y,z)\in\lbrace \left( H^{1}(\Omega\cup\partial\Omega) \right)^3 \quad \backslash\quad \overrightarrow{\phi}(x,y,z)=0\qquad (x,y,z)\in\Gamma_u\rbrace +\end{equation} +\begin{equation} +P^*(x,y,z)\in H^{1}(\Omega\cup\partial\Omega) +\end{equation} +\\ +For any function of these virtual fields, one can take the scalar product of the equations with $\overrightarrow{\phi}=\left(\phi_x,0 ,0\right) $, $\overrightarrow{\phi}=\left(0,\phi_y,0 \right) $ and $\overrightarrow{\phi}=\left(0,0,\phi_z \right) $ that are 3 other kinematically admissible velocity fields. One can also multiply the last equation by the virtual pressure field and integrate this product over the domain. This gives us: + +\begin{equation} +\begin{array}{l} +\displaystyle \iiint_\Omega %double +\left[ +\frac{\partial}{\partial x} \left( 2 \mu \frac{\partial u}{\partial x} \right) ++\frac{\partial}{\partial y} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial u}{\partial z} +\mu \frac{\partial w}{\partial x} \right) +-\frac{\partial P}{\partial x} +\right] \phi_x d\Omega =0 +\\ +\\ +\displaystyle \iiint_\Omega %double +\left[ +\frac{\partial}{\partial x} \left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right) ++\frac{\partial}{\partial y} \left( 2 \mu \frac{\partial v}{\partial y} \right) ++\frac{\partial}{\partial z} \left( \mu \frac{\partial v}{\partial z} +\mu \frac{\partial w}{\partial y} \right) +-\frac{\partial P}{\partial y} +\right] \phi_y d\Omega =0 +\\ +\\ +\displaystyle \iiint_\Omega %double +\left[ +\frac{\partial}{\partial x} \left( \mu \frac{\partial u}{\partial z} +\mu \frac{\partial w}{\partial x} \right) ++\frac{\partial}{\partial y} \left( \mu \frac{\partial v}{\partial z} +\mu \frac{\partial w}{\partial y} \right) ++\frac{\partial}{\partial z} \left( 2 \mu \frac{\partial w}{\partial z} \right) +-\frac{\partial P}{\partial z} - \rho g +\right] \phi_z d\Omega =0 +\\ +\\ +\displaystyle \iiint_\Omega %double +\left[ +-\frac{\partial u}{\partial x}-\frac{\partial v}{\partial y}-\frac{\partial w}{\partial z} +\right] P^* d\Omega =0 +\end{array} +\end{equation} +\\ +\emph{NB}: We change the sign of the incompressibility equation because otherwise the stiffness matrix wouldn't be symmetric.\\ +One intergrates by parts the first three equations in order to merge in the force on the ice front $\Gamma_i$ and the basal friction $\Gamma_b$: + +\begin{multline} +\iiint_\Omega %double +\left[ + \left( 2 \mu \frac{\partial u}{\partial x} \right)\frac{\partial \phi_x}{\partial x} ++\left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right)\frac{\partial \phi_x}{\partial y} ++\left( \mu \frac{\partial u}{\partial z} +\mu \frac{\partial w}{\partial x} \right)\frac{\partial \phi_x}{\partial z} +-P\frac{\partial \phi_x}{\partial x} +\right] d\Omega +\\ + = +\iint_{\Gamma_i\cup\Gamma_b} F n_x\phi_x d\Gamma +\end{multline} +\begin{multline} +\iiint_\Omega %double +\left[ +\left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right)\frac{\partial \phi_y }{\partial x} ++\left( 2 \mu \frac{\partial v}{\partial y} \right)\frac{\partial \phi_y }{\partial y} ++ \left( \mu \frac{\partial v}{\partial z} +\mu \frac{\partial w}{\partial y} \right)\frac{\partial \phi_y }{\partial z} +-P \frac{\partial \phi_y }{\partial y} +\right]d\Omega +\\ + = +\iint_{\Gamma_i\cup\Gamma_b} F n_y\phi_y d\Gamma +\end{multline} +\begin{multline} +\iiint_\Omega %double +\left[ +\left( \mu \frac{\partial u}{\partial z} +\mu \frac{\partial w}{\partial x} \right)\frac{\partial \phi_z }{\partial x} ++\left( \mu \frac{\partial v}{\partial z} +\mu \frac{\partial w}{\partial y} \right)\frac{\partial \phi_z }{\partial y} ++\left( 2 \mu \frac{\partial w}{\partial z} \right)\frac{\partial \phi_z }{\partial z} +-P\frac{\partial \phi_z }{\partial z} +\right]d\Omega +\\ += +\iint_{\Gamma_i} F n_z\phi_z d\Gamma +-\iiint_\Omega %double +\rho g \phi_z d\Omega +\end{multline} +\\ +It is easier to put the basal friction at the left hand side of the equation since it is velocity dependant. The first two equations become: + +\begin{multline} +\iiint_\Omega %double +\left[ + \left( 2 \mu \frac{\partial u}{\partial x} \right)\frac{\partial \phi_x}{\partial x} ++\left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right)\frac{\partial \phi_x}{\partial y} ++\left( \mu \frac{\partial u}{\partial z} +\mu \frac{\partial w}{\partial x} \right)\frac{\partial \phi_x}{\partial z} +-P\frac{\partial \phi_x}{\partial x} +\right] d\Omega +\\ + + \iint_{\Gamma_b} \alpha^2 u \phi_x d\Gamma + = +\iint_{\Gamma_i} F n_x\phi_x d\Gamma +\end{multline} +\begin{multline} +\iiint_\Omega %double +\left[ +\left( \mu \frac{\partial u}{\partial y} +\mu \frac{\partial v}{\partial x} \right)\frac{\partial \phi_y }{\partial x} ++\left( 2 \mu \frac{\partial v}{\partial y} \right)\frac{\partial \phi_y }{\partial y} ++ \left( \mu \frac{\partial v}{\partial z} +\mu \frac{\partial w}{\partial y} \right)\frac{\partial \phi_y }{\partial z} +-P \frac{\partial \phi_y }{\partial y} +\right]d\Omega +\\ + + \iint_{\Gamma_b} \alpha^2 v \phi_y d\Gamma + = +\iint_{\Gamma_i} F n_y\phi_y d\Gamma +\end{multline} +\newpage + \subsection{Finite element discretisation, Galerkin method} + +The domain is meshed using MINI elements (See \ref{MINI} for more details). The pressure is evaluated on the pentahedron vertices ($nods$), and the velocity is evaluated on the same vertices and also in a grid located in the middle of each element ($nods+nel$). We use the nodal functions of each grid, which are continuous on the domain.\\ +We now project the velocities on the classical nodal functions $\phi_{j}$ and on the bubble function $\phi_{b_j}$, and the pressur on the classical nodal functions: + +\begin{equation} +\begin{array}{c} +\displaystyle u\left( x,y,z\right) = \sum_{i=1}^{nods}u_{i}\phi_{i}\left( x,y,z\right)+\sum_{j=1}^{nels}u_{j}\phi_{b_j}\left( x,y,z\right) += \sum_{j=1}^{nods+nels}u_{j}\phi_{j}\left( x,y,z\right) \\ +\\ +\displaystyle v\left( x,y,z\right) = \sum_{i=1}^{nods}v_{i}\phi_{i}\left( x,y,z\right)+\sum_{j=1}^{nels}v_{j}\phi_{b_j}\left( x,y,z\right) += \sum_{j=1}^{nods+nels}v_{j}\phi_{j}\left( x,y,z\right) \\ +\\ +\displaystyle w\left( x,y,z\right) = \sum_{i=1}^{nods}w_{i}\phi_{i}\left( x,y,z\right)+\sum_{j=1}^{nels}w_{j}\phi_{b_j}\left( x,y,z\right) += \sum_{j=1}^{nods+nels}w_{j}\phi_{j}\left( x,y,z\right) \\ +\\ +\displaystyle P\left( x,y,z\right)= \sum_{k=1}^{nods}P_{k}\phi_{k}\left( x,y,z\right) +\end{array} +\end{equation} +\\ +The nodal functions $\phi_{i}$ are bubble functions if $i>nods$. We build a vector $W$ that holds all the unknows of the velocity and pressure field (for the sake of simplicity, this vector holds the speed components first and then the pressure of each element. This is not exactly what is done in ICE since the stiffness matrix would be badly conditioned): +: + +\begin{equation} +W=\left[ \begin{array}{l} +u_{1}\\ +v_{1}\\ +w_{1}\\ +\vdots\\ +w_{nods}\\ +P_{nods}\\ +\vdots\\ +P_{nods+nel}\\ +\end{array} \right] +\end{equation} +\\ +With these new unknows, one can replace the components of the virtual function $\overrightarrow{\phi}$ by any nodal functions (classical or bubble): +\begin{center} + $\forall 1 \leq i \leq nods+nel$ +\end{center} +\begin{multline} +\sum_{j=1}^{nods+nel} +\iiint_\Omega %double + \left( 2 \mu u_j\frac{\partial \phi_j}{\partial x} \right)\frac{\partial \phi_i}{\partial x} ++\left( \mu u_j\frac{\partial \phi_j}{\partial y} +\mu v_j \frac{\partial \phi_j}{\partial x} \right)\frac{\partial \phi_i}{\partial y} ++\left( \mu u_j\frac{\partial \phi_j}{\partial z} +\mu w_j \frac{\partial \phi_j}{\partial x} \right)\frac{\partial \phi_i}{\partial z} +d\Omega +\\ ++ \sum_{j=1}^{nods+nel} \iint_{\Gamma_b} \alpha^2 u_j \phi_j\phi_i d\Gamma ++ \sum_{k=1}^{nods} \iint_{\Gamma_b} P_k \phi_k\phi_i n_x d\Gamma +-\sum_{k=1}^{nods}\iiint_\Omega +P_{k} \phi_k\frac{\partial \phi_i}{\partial x} +d\Omega + = +\iint_{\Gamma_i} F n_x\phi_i d\Gamma +\end{multline} +\begin{multline} +\sum_{j=1}^{nods+nel} +\iiint_\Omega %double +\left( \mu u_j\frac{\partial \phi_j}{\partial y} +\mu v_j\frac{\partial \phi_j}{\partial x} \right)\frac{\partial \phi_i }{\partial x} ++\left( 2 \mu v_j\frac{\partial \phi_j}{\partial y} \right)\frac{\partial \phi_i }{\partial y} ++ \left( \mu v_j\frac{\partial \phi_j}{\partial z} +\mu w_j\frac{\partial \phi_j}{\partial y} \right)\frac{\partial \phi_i }{\partial z} +d\Omega +\\ ++ \sum_{j=1}^{nods+nel} \iint_{\Gamma_b} \alpha^2 v_j \phi_j\phi_i d\Gamma ++ \sum_{k=1}^{nods} \iint_{\Gamma_b} P_k \phi_k\phi_i n_y d\Gamma +-\sum_{k=1}^{nods}\iiint_\Omega +P_{k} \phi_k\frac{\partial \phi_i}{\partial y} +d\Omega + = +\iint_{\Gamma_i} F n_y\phi_i d\Gamma +\end{multline} +\begin{multline} +\sum_{j=1}^{nods+nel} +\iiint_\Omega %double +\left( \mu u_j\frac{\partial \phi_j}{\partial z} +\mu w_j\frac{\partial \phi_j}{\partial x} \right)\frac{\partial \phi_i }{\partial x} ++\left( \mu v_j\frac{\partial \phi_j }{\partial z} +\mu w_j\frac{\partial \phi_j}{\partial y} \right)\frac{\partial \phi_i }{\partial y} ++\left( 2 \mu w_j\frac{\partial \phi_j}{\partial z} \right)\frac{\partial \phi_i }{\partial z} +d\Omega +\\ +-\sum_{k=1}^{nods}\iiint_\Omega +P_{k} \phi_k\frac{\partial \phi_i}{\partial z} +d\Omega += +\iint_{\Gamma_i} F n_z\phi_i d\Gamma +-\iiint_\Omega %double +\rho g \phi_i d\Omega +\end{multline} +\\ +By rearranging terms: +\begin{center} + $\forall 1 \leq i \leq nods+nel$ +\end{center} +\begin{multline} +\sum_{j=1}^{nods+nel} +u_j \left[ +\iiint_\Omega %double + 2 \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} d\Omega + + \iint_{\Gamma_b} \alpha^2 \phi_j\phi_i d\Gamma +\right] ++ +v_j \left[ +\iiint_\Omega %double + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial y} +d\Omega +\right]\\ ++ + w_j\left[ + \iiint_\Omega %double +\mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial z} +d\Omega +\right] ++\sum_{k=1}^{nods} P_{k} +\left[\iint_{\Gamma_b} \phi_k\phi_i n_x d\Gamma +-\iiint_\Omega +\phi_k\frac{\partial \phi_i}{\partial x} +d\Omega \right] + = +\iint_{\Gamma_i} F n_x\phi_i d\Gamma +\end{multline} +\begin{multline} +\sum_{j=1}^{nods+nel} +u_j \left[ +\iiint_\Omega %double + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial x} +d\Omega \right] ++ +v_j\left[ +\iiint_\Omega %double + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + +2\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} d\Omega + + \iint_{\Gamma_b} \alpha^2 \phi_j\phi_i d\Gamma +\right] \\ ++ +w_j\left[ +\iiint_\Omega %double +\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial z} d\Omega +\right] ++\sum_{k=1}^{nods} P_{k} +\left[ \iint_{\Gamma_b} \phi_k\phi_i n_y d\Gamma +- \iiint_\Omega +\phi_k\frac{\partial \phi_i}{\partial z} +d\Omega \right] + = +\iint_{\Gamma_i} F n_y\phi_i d\Gamma +\end{multline} +\begin{multline} +\sum_{j=1}^{nods+nel} +\iiint_\Omega %double +u_j\left[ +\iiint_\Omega %double +\mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial x} d\Omega +\right] ++ + v_j\left[ +\iiint_\Omega %double +\mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial y} d\Omega +\right]\\ ++ + w_j \left[ +\iiint_\Omega %double + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + +2 \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} d\Omega +\right] +-\sum_{k=1}^{nods} P_{k}\iiint_\Omega +\phi_k\frac{\partial \phi_i}{\partial y} +d\Omega += +\iint_{\Gamma_i} F n_z\phi_i d\Gamma +-\iiint_\Omega %double +\rho g \phi_i d\Omega +\end{multline} +\\ +And the incompressibility gives an additional equation, with $P^*=\phi_l\left( x,y,z\right)$ ($1\leq l\leq nods$, no bubble functions): +\vspace*{-2mm} +\begin{center} + $\forall 1 \leq l \leq nods $ +\end{center} +\begin{equation} +\displaystyle \sum_{j=1}^{nods+nel} \iiint_\Omega %double +\left[ +-\frac{\partial \phi_j}{\partial x}u_j-\frac{\partial \phi_j}{\partial y}v_j-\frac{\partial\phi_j }{\partial z}w_j +\right] \phi_l d\Omega =0 +\end{equation} +\\ +We see the stiffness matrix $K$ and load vector $F$ appearing, so that the previous equation can be written as follows: + +\begin{equation*} +\left[ +\begin{array}{c c c c c c c} %K + & \vdots & \vdots &\vdots & &\vdots &\\ + \cdots & K_{3i-2,3j-2} & K_{3i-2,3j-1} & K_{3i-2,3j} &\cdots & K_{3i-2,3nods+k} & \cdots\\ + &&&&& \\ + \cdots & K_{3i-1,3j-2} & K_{3i-1,3j-1} & K_{3i-1,3j} &\cdots & K_{3i-1,3nods+k} & \cdots\\ + &&&&& \\ + \cdots & K_{3i,3j-2} & K_{3i,3j-1} & K_{3i,3j} & \cdots & K_{3i,3nods+k} & \cdots\\ + & \vdots & \vdots &\vdots & &\vdots &\\ + \cdots & K_{3nods+l,3j-2} & K_{3nods+l,3j-1} & K_{3nods+l,3j} &\cdots & K_{3nods+l,3nods+k} & \cdots\\ + & \vdots & \vdots &\vdots & &\vdots &\\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +u_j\\ +\\ +v_j\\ +\\ +w_j\\ +\vdots\\ +P_k\\ +\vdots\\ +\end{array} +\right] += +\left[ +\begin{array}{c} %F +\vdots \\ +F_{3j-2}\\ +\\ +F_{3j-1}\\ +\\ +F_{3j}\\ +\vdots\\ +F_{3nods+k}\\ +\vdots\\ +\end{array} +\right] +\end{equation*} +\begin{equation} +\begin{array}{l l} +\displaystyle +K_{3i-2,3j-2} &\displaystyle = +\iiint_\Omega %double + 2 \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +d\Omega + + \iint_{\Gamma_b} \alpha^2 \phi_j\phi_i d\Gamma \\ +\\ +K_{3i-2,3j-1} &\displaystyle = +\iiint_\Omega %double + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial y} +d\Omega\\ +\\ +K_{3i-2,3j} &\displaystyle = +\iiint_\Omega %double +\mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial z} +d\Omega\\ +\\ +K_{3i-2,3nods+k} &\displaystyle = +\iint_{\Gamma_b} \phi_k\phi_i n_x d\Gamma ++\iiint_\Omega %double +-\phi_k\frac{\partial \phi_i}{\partial x} +d\Omega\\ +\\ +\displaystyle +K_{3i-1,3j-2} &\displaystyle = +\iiint_\Omega %double +\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial x} +d\Omega\\ +\\ +K_{3i-1,3j-1} &\displaystyle = +\iiint_\Omega %double + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + +2\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +d\Omega + + \iint_{\Gamma_b} \alpha^2 \phi_j\phi_i d\Gamma \\ +\\ +K_{3i-1,3j} &\displaystyle = +\iiint_\Omega %double +\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial z} +d\Omega\\ +\\ +K_{3i-1,3nods+k} &\displaystyle = +\iint_{\Gamma_b} \phi_k\phi_i n_x d\Gamma ++ +\iiint_\Omega %double +-\phi_k\frac{\partial \phi_i}{\partial y} +d\Omega\\ +\\ +\displaystyle +K_{3i,3j-2} &\displaystyle = +\iiint_\Omega %double +\mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial x} +d\Omega\\ +\\ +K_{3i,3j-1} &\displaystyle = +\iiint_\Omega %double +\mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial y} +d\Omega\\ +\\ +K_{3i,3j} &\displaystyle = +\iiint_\Omega %double + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + +2 \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +d\Omega\\ +\\ +K_{3i,3nods+k} &\displaystyle = +\iiint_\Omega %double +-\phi_k\frac{\partial \phi_i}{\partial z} +d\Omega\\ +\\ +\displaystyle +K_{3nods+l,3j-2} &\displaystyle = +\iiint_\Omega %double +-\frac{\partial \phi_j}{\partial x}\phi_l d\Omega\\ +\\ +K_{3nods+l,3j-1} &\displaystyle = +\iiint_\Omega %double +-\frac{\partial \phi_j}{\partial y}\phi_l d\Omega\\ +\\ +K_{3nods+l,3j} &\displaystyle = +\iiint_\Omega %double +-\frac{\partial \phi_j}{\partial z}\phi_l d\Omega\\ +\\ +K_{3nods+l,3nods+k} & =0\\ +\end{array} +\end{equation} +And the load vector has the following expression: +\begin{equation} +\begin{array}{l l} +\displaystyle +F_{3i-2} &\displaystyle = +\iint_{\Gamma_i} F n_x\phi_i d\Gamma\\ +\\ +F_{3i-1} &\displaystyle = +\iint_{\Gamma_i} F n_y\phi_i d\Gamma\\ +\\ +F_{3i} &\displaystyle = +\iint_{\Gamma_i} F n_z\phi_i d\Gamma +-\iiint_\Omega %double +\rho g \phi_i d\Omega\\ +\\ +F_{3nods+k} &\displaystyle = 0 +\end{array} +\end{equation} +\newpage + \subsection{Decomposition over the elements and reference element} +See the same section for Pattyn's model.\\ +\\ +One element $E$ gives 19 equations: we can take 6 classical nodal functions for $\phi_i(x,y,z)$ (the nodal functions corresponding to the vertexes of $E$, which is an pentahedron), each $\phi_i$ gives 4 equations (one for the x-component, one for the y-component, one for the z-component and one for the pressure) and there are 3 additional equations using the grid in the middle of the pentahedron (3 compenents of the velocity). Therefore, an elementary stiffness matrix $K_E$ will be $27 \times 27$, and the elementary load vector will be of size $27$. + +\newpage + \subsection{Elementary stiffness matrix} + +To compute the elementary stiffness matrix, we first remove the basal drag, that will create a first elementary stiffness matrix $K1$, the basal drag will constitute another stiffness matrix $K2$. The elementary stiffness matrix will be the sum of $K1$ and $K2$ ($K_E=K1+K2$). + + \subsubsection{Without basal drag} + +This matrix has the following shape: + +\begin{center} + $1 \leq i \leq 7$, $1 \leq j \leq 7$, $1 \leq k \leq 6$ and $1 \leq l \leq 6$ +\end{center} +\begin{equation} +\begin{array}{l l} +\displaystyle +K_{3i-2,3j-2} &\displaystyle = +\iiint_E %double + 2 \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +d\Omega\\ +\\ +K_{3i-2,3j-1} &\displaystyle = +\iiint_E %double + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial y} +d\Omega\\ +\\ +K_{3i-2,3j} &\displaystyle = +\iiint_E %double +\mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial z} +d\Omega\\ +\\ +K_{3i-2,k} &\displaystyle = +\iiint_E %double +-\phi_k\frac{\partial \phi_i}{\partial x} +d\Omega\\ +\end{array} +\end{equation} +\begin{equation} +\begin{array}{l l} +\displaystyle +K_{3i-1,3j-2} &\displaystyle = +\iiint_E %double +\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial x} +d\Omega\\ +\\ +K_{3i-1,3j-1} &\displaystyle = +\iiint_E %double + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + +2\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + + \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +d\Omega\\ +\\ +K_{3i-1,3j} &\displaystyle = +\iiint_E %double +\mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial z} +d\Omega\\ +\\ +K_{3i-1,k} &\displaystyle = +\iiint_E %double +-\phi_k\frac{\partial \phi_i}{\partial y} +d\Omega\\ +\end{array} +\end{equation} +\begin{equation} +\begin{array}{l l} +\displaystyle +K_{3i,3j-2} &\displaystyle = +\iiint_E %double +\mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial x} +d\Omega\\ +\\ +K_{3i,3j-1} &\displaystyle = +\iiint_E %double +\mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial y} +d\Omega\\ +\\ +K_{3i,3j} &\displaystyle = +\iiint_E %double + \mu \frac{\partial \phi_j}{\partial x} \frac{\partial \phi_i}{\partial x} + + \mu \frac{\partial \phi_j}{\partial y} \frac{\partial \phi_i}{\partial y} + +2 \mu \frac{\partial \phi_j}{\partial z} \frac{\partial \phi_i}{\partial z} +d\Omega\\ +\\ +K_{3i,k} &\displaystyle = +\iiint_E %double +-\frac{\partial \phi_i}{\partial z}\phi_k +d\Omega\\ +\\ +\displaystyle +K_{l,3j-2} &\displaystyle = +\iiint_E %double +-\frac{\partial \phi_j}{\partial x}\phi_l d\Omega\\ +\\ +K_{l,3j-1} &\displaystyle = +\iiint_E %double +-\frac{\partial \phi_j}{\partial y}\phi_l d\Omega\\ +\\ +K_{l,3j} &\displaystyle = +\iiint_E %double +-\frac{\partial \phi_j}{\partial z}\phi_l d\Omega\\ +\\ +K_{l,k} & =0\\ +\end{array} +\end{equation} +\\ +\newpage +Using the reference element $\hat{E}$ and the gaussian points, this matrix becomes: +\begin{center} + $1 \leq i \leq 7$, $1 \leq j \leq 7$, $1 \leq k \leq 6$ and $1 \leq l \leq 6$ +\end{center} +\medskip +\begin{equation*} +\begin{array}{c l} +\displaystyle +K1_{3i-2,3j-2} & \displaystyle = +\iiint_{\hat{E}} %triple + \left( + 2 \mu \frac{\partial L_j}{\partial \varphi_x} \frac{\partial L_i}{\partial \varphi_x} + + \mu \frac{\partial L_j}{\partial \varphi_y} \frac{\partial L_i}{\partial \varphi_y} + + \mu \frac{\partial L_j}{\partial \varphi_z} \frac{\partial L_i}{\partial \varphi_z} + \right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + 2 \mu \left.\frac{\partial L_j}{\partial \varphi_x} \right|_g \left.\frac{\partial L_i}{\partial \varphi_x} \right|_g + + \mu \left.\frac{\partial L_j}{\partial \varphi_y} \right|_g \left.\frac{\partial L_i}{\partial \varphi_y} \right|_g ++ \mu \left.\frac{\partial L_j}{\partial \varphi_z} \right|_g \left.\frac{\partial L_i}{\partial \varphi_z} \right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K1_{3i-2,3j-1} & \displaystyle = +\iiint_{\hat{E}} %triple + \left( + \mu \frac{\partial L_j}{\partial \varphi_x} \frac{\partial L_i}{\partial \varphi_y} + \right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + \mu \left.\frac{\partial L_j}{\partial \varphi_x}\right|_g \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K1_{3i-2,3j} & \displaystyle = +\iiint_{\hat{E}} %triple + \left( +\mu \frac{\partial L_j}{\partial \varphi_x} \frac{\partial L_i}{\partial \varphi_z} + \right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( +\mu \left.\frac{\partial L_j}{\partial \varphi_x}\right|_g \left.\frac{\partial L_i}{\partial \varphi_z} \right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K1_{3i-2,k} & \displaystyle = +\iiint_{\hat{E}} %triple + \left( +-L_k\frac{\partial L_i}{\partial \varphi_x} + \right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( +-L_k(g)\left.\frac{\partial L_i}{\partial \varphi_x}\right|_g +\right) \vert J_g \vert \\ +\end{array} +\end{equation*} +\begin{equation*} +\begin{array}{c l} +\displaystyle +K_{3i-1,3j-2} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( +\mu \frac{\partial L_j}{\partial \varphi_y} \frac{\partial L_i}{\partial \varphi_x} +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + \mu \left.\frac{\partial L_j}{\partial \varphi_y}\right|_g \left.\frac{\partial L_i}{\partial \varphi_x} \right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{3i-1,3j-1} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( +\mu \frac{\partial L_j}{\partial \varphi_x} \frac{\partial L_i}{\partial \varphi_x} + +2\mu \frac{\partial L_j}{\partial \varphi_y} \frac{\partial L_i}{\partial \varphi_y} + + \mu \frac{\partial L_j}{\partial \varphi_z} \frac{\partial L_i}{\partial \varphi_z} +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + \mu \left.\frac{\partial L_j}{\partial \varphi_x}\right|_g \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g + +2\mu \left.\frac{\partial L_j}{\partial \varphi_y}\right|_g \left.\frac{\partial L_i}{\partial \varphi_y} \right|_g ++ \mu \left.\frac{\partial L_j}{\partial \varphi_z}\right|_g \left.\frac{\partial L_i}{\partial \varphi_z} \right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{3i-1,3j} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( +\mu \frac{\partial L_j}{\partial \varphi_y} \frac{\partial L_i}{\partial \varphi_z} +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( +\mu \left.\frac{\partial L_j}{\partial \varphi_y}\right|_g \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{3i-1,k} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( +-L_k\frac{\partial L_i}{\partial \varphi_y} +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + -L_k(g)\left.\frac{\partial L_i}{\partial \varphi_y}\right|_g +\right) \vert J_g \vert \\ +\end{array} +\end{equation*} +\begin{equation*} +\begin{array}{c l} +\displaystyle +K_{3i,3j-2} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( + \mu \frac{\partial L_j}{\partial \varphi_z} \frac{\partial L_i}{\partial \varphi_x} +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + \mu \left.\frac{\partial L_j}{\partial \varphi_z}\right|_g \left.\frac{\partial L_i}{\partial \varphi_x} \right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{3i,3j-1} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( + \mu \frac{\partial L_j}{\partial \varphi_z} \frac{\partial L_i}{\partial \varphi_y} +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + \mu \left.\frac{\partial L_j}{\partial \varphi_z}\right|_g \left.\frac{\partial L_i}{\partial \varphi_y} \right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{3i,3j} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( + \mu \frac{\partial L_j}{\partial \varphi_x} \frac{\partial L_i}{\partial \varphi_x} + + \mu \frac{\partial L_j}{\partial \varphi_y} \frac{\partial L_i}{\partial \varphi_y} + +2 \mu \frac{\partial L_j}{\partial \varphi_z} \frac{\partial L_i}{\partial \varphi_z} +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + \mu \left.\frac{\partial L_j}{\partial \varphi_x} \right|_g \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g + + \mu \left.\frac{\partial L_j}{\partial \varphi_y}\right|_g \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g ++2 \mu \left.\frac{\partial L_j}{\partial \varphi_z}\right|_g \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{3i,k} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( +-L_k\frac{\partial L_i}{\partial \varphi_z} +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( +-L_k(g)\left.\frac{\partial L_i}{\partial \varphi_z}\right|_g +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{l,3j-2} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( + -\frac{\partial L_j}{\partial \varphi_x} L_l +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + -\left.\frac{\partial L_j}{\partial \varphi_x} \right|_g L_l(g) +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{l,3j-1} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( + -\frac{\partial L_j}{\partial \varphi_y}L_l +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + -\left.\frac{\partial L_j}{\partial \varphi_y}\right|_g L_l(g) +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{l,3j} &\displaystyle = +\iiint_{\hat{E}} %triple +\left( + -\frac{\partial L_j}{\partial \varphi_z} L_l +\right) \vert J \vert d\hat{V} \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g \left( + -\left.\frac{\partial L_j}{\partial \varphi_z}\right|_g L_l(g) +\right) \vert J_g \vert \\ +\\ +\displaystyle +K_{l,k} &\displaystyle = +0 \\ \\ +& \displaystyle \simeq +\sum_{g=1}^3 0 \\ +\end{array} +\end{equation*} +\newpage +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K1= \sum_{g=1}^3 [B]^T[D][B']$ as follows: +\\ +\begin{equation*} +[B]=\left[\begin{array}{c c c c c c c} +B_1 & B_2 & B_3 & B_4 & B_5 & B_6 & B_b +\end{array}\right] +\quad \text{and} \quad +[B']=\left[\begin{array}{c c c c c c c} +B'_1 & B'_2 & B'_3 & B'_4 & B'_5 & B'_6 & B_b +\end{array}\right] +\end{equation*} +\\ +with: +\begin{equation*} +[B_i]=\left[ +\begin{array}{c c c c} +\displaystyle \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g & 0 & 0 & 0\\ +\\ +0 & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & 0 & 0\\ +\\ +0 & 0 & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & 0\\ +\\ +\displaystyle \frac{1}{2}\left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & \displaystyle \frac{1}{2}\left.\frac{\partial L_i}{\partial \varphi_x}\right|_g & 0 & 0\\ +\\ +\displaystyle \frac{1}{2}\left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & 0 & \displaystyle \frac{1}{2}\left.\frac{\partial L_i}{\partial \varphi_x}\right|_g & 0\\ +\\ +0 & \displaystyle \frac{1}{2}\left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & \displaystyle \frac{1}{2}\left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & 0\\ +\\ +0 & 0 & 0 & L_i(g)\\ +\\ +\displaystyle \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & 0 \\ +\end{array} +\right]\quad \text{and} \quad +[B_b]=\left[ +\begin{array}{c c c} +\displaystyle \left.\frac{\partial L_b}{\partial \varphi_x}\right|_g & 0 & 0\\ +\\ +0 & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_y}\right|_g & 0\\ +\\ +0 & 0 & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_z}\right|_g \\ +\\ +\displaystyle \frac{1}{2}\left.\frac{\partial L_b}{\partial \varphi_y}\right|_g & \displaystyle \frac{1}{2}\left.\frac{\partial L_b}{\partial \varphi_x}\right|_g & 0 \\ +\\ +\displaystyle \frac{1}{2}\left.\frac{\partial L_b}{\partial \varphi_z}\right|_g & 0 & \displaystyle \frac{1}{2}\left.\frac{\partial L_b}{\partial \varphi_x}\right|_g \\ +\\ +0 & \displaystyle \frac{1}{2}\left.\frac{\partial L_b}{\partial \varphi_z}\right|_g & \displaystyle \frac{1}{2}\left.\frac{\partial L_b}{\partial \varphi_y}\right|_g \\ +\\ +0 & 0 & 0 \\ +\\ +\displaystyle \left.\frac{\partial L_b}{\partial \varphi_x}\right|_g & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_y}\right|_g & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_z}\right|_g \\ +\end{array} +\right] +\end{equation*}\\ +\\ +\begin{equation*} +[B_i']= +\left[ +\begin{array}{c c c c} +\displaystyle \quad \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g & 0 & 0 & 0\\ +\\ +0 & \displaystyle \quad\left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & 0& 0\\ +\\ +0 & 0 & \displaystyle \quad\left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & 0\\ +\\ +\displaystyle \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g & 0& 0\\ +\\ +\displaystyle \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & 0 & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g & 0\\ +\\ +0 & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & 0\\ +\\ +\displaystyle \left.\frac{\partial L_i}{\partial \varphi_x}\right|_g & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_y}\right|_g & \displaystyle \left.\frac{\partial L_i}{\partial \varphi_z}\right|_g & 0 \\ +\\ +0 & 0 & 0 & L_i(g)\\ +\\ +\end{array} +\right]\quad \text{and} \quad +[B_b']=\left[ +\begin{array}{c c c c} +\displaystyle \quad\left.\frac{\partial L_b}{\partial \varphi_x}\right|_g & 0 & 0 \\ +\\ +0 & \displaystyle \quad\left.\frac{\partial L_b}{\partial \varphi_y}\right|_g & 0\\ +\\ +0 & 0 &\displaystyle \quad \left.\frac{\partial L_b}{\partial \varphi_z}\right|_g \\ +\\ +\displaystyle \left.\frac{\partial L_b}{\partial \varphi_y}\right|_g & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_x}\right|_g & 0\\ +\\ +\displaystyle \left.\frac{\partial L_b}{\partial \varphi_z}\right|_g & 0 & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_x}\right|_g\\ +\\ +0 & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_z}\right|_g & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_y}\right|_g\\ +\\ +\displaystyle \left.\frac{\partial L_b}{\partial \varphi_x}\right|_g & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_y}\right|_g & \displaystyle \left.\frac{\partial L_b}{\partial \varphi_z}\right|_g \\ +\\ +0 & 0 & 0\\ +\end{array} +\right] +\end{equation*} +and +\begin{equation} +\displaystyle D=W_g \vert J_g \vert \left[ +\begin{array}{c c c c c c c c} +\displaystyle 2\mu & 0 & 0 & 0 & 0 & 0 & 0 & 0\\ +\\ +0 & \displaystyle 2\mu & 0 & 0 & 0 & 0 & 0 & 0\\ +\\ +0 & 0 & \displaystyle 2\mu & 0 & 0 & 0 & 0 & 0\\ +\\ +0 & 0 & 0 & \displaystyle 2\mu & 0 & 0 & 0 & 0\\ +\\ +0 & 0 & 0 & 0 & \displaystyle 2\mu & 0 & 0 & 0\\ +\\ +0 & 0 & 0 & 0 & 0 & \displaystyle 2\mu & 0 & 0\\ +\\ +0 & 0 & 0 & 0 & 0 & 0 & \displaystyle -1 & 0\\ +\\ +0 & 0 & 0 & 0 & 0 & 0 & 0 & \displaystyle -1\\ +\end{array} +\right] \end{equation} +\\\emph{NB:} in $ISSM$ code, the factor $2$ in the $D$ matrix does not exist since the constitutive relation used is $\sigma'=\mu\varepsilon$ instead of $\sigma'=2\mu\varepsilon$. This changes the viscosity definition that must be multiplied by $2$. + + \subsubsection{Basal drag} +As with Pattyn's, the elements are triangles and there are only 3 nodal functions to take into account. Therefore, the stiffness matrix that stands for basal drag is $9 \times 9$.\\ +The basal drag stiffness matrix is such that: +\begin{center} + $1 \leq i \leq 3$, $1 \leq j \leq 3$ and $1 \leq k \leq 3$ +\end{center} +\begin{equation} +\begin{array}{l c c} +\displaystyle +K_{3i-2,3j-2} &\displaystyle = &\displaystyle \iint_{E\cap \Gamma_b} \alpha^2 \phi_j\phi_i d\Gamma \\ +\\ +\displaystyle K_{3i-1,3j-1} &\displaystyle = &\displaystyle \iint_{E\cap \Gamma_b} \alpha^2 \phi_j\phi_i d\Gamma \\ +\\ +\displaystyle K_{3i-2,k} &\displaystyle = &\displaystyle \iint_{E\cap \Gamma_b} \phi_k\phi_i n_x d\Gamma \\ +\\ +\displaystyle K_{3i-1,k} &\displaystyle = &\displaystyle \iint_{E\cap \Gamma_b} \phi_k\phi_i n_y d\Gamma \\ +\end{array} +\end{equation} +\\ +The other terms are equal to zero.\\ +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix become: + + \begin{equation} +\begin{array}{l l l} +\displaystyle +K_{3i-2,3j-2} & = +\displaystyle \iint_{\hat{E}\cap \hat{\Gamma_b}} %double +\alpha^2 L_j(r,s) L_i(r,s) \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 +W_g \alpha^2 L_j(r_g,s_g) L_i(r_g,s_g) \vert J_g \vert + \\ +\\ +\displaystyle +K_{3i-1,3j-1} & = +\displaystyle \iint_{\hat{E}\cap \hat{\Gamma_b}} %double +\alpha^2 L_j(r,s) L_i(r,s) \vert J \vert d\hat{S} & +\displaystyle \simeq +\sum_{g=1}^3 +W_g \alpha^2 L_j(r_g,s_g) L_i(r_g,s_g) \vert J_g \vert + \\ + \\ + \displaystyle +K_{3i-2,k} & = +\displaystyle \iint_{\hat{E}\cap \hat{\Gamma_b}} %double + L_k(r,s) L_i(r,s) \vert J \vert n_x d\hat{S} & +\displaystyle \simeq +\sum_{g=1}^3 +W_g L_k(r_g,s_g) L_i(r_g,s_g) \vert J_g \vert n_x + \\ + \\ + \displaystyle +K_{3i-1,k} & = +\displaystyle \iint_{\hat{E}\cap \hat{\Gamma_b}} %double + L_k(r,s) L_i(r,s) \vert J \vert n_y d\hat{S} & +\displaystyle \simeq +\sum_{g=1}^3 +W_g L_k(r_g,s_g) L_i(r_g,s_g) \vert J_g \vert n_y + \\ + \\ +\end{array} +\end{equation} +\\ +This matrix is calculated with three matrices: $\displaystyle K2=\sum_{g=1}^3 [L]^T[D_{drag}][L']$ as follows: +\\ +\begin{equation*} +[L]=\left[\begin{array}{c c c} +L_1 & L_2 & L_3 +\end{array}\right] +\quad \text{and} \quad +[L']=\left[\begin{array}{c c c} +L'_1 & L'_2 & L'_3 +\end{array}\right] +\end{equation*} +\\ +with: +\begin{equation*} +[L_i]= +\left[ +\begin{array}{c c c c} +\displaystyle +L_i(r_g,s_g) & 0 & 0 & 0 \\ +\\ +0 & L_i(r_g,s_g) & 0 & 0 \\ +\\ +L_i(r_g,s_g) & 0 & 0 & 0 \\ +\\ +0 & L_i(r_g,s_g) & 0 & 0 \\ +\\ +\end{array} +\right]\quad \text{and} \quad +[L'_i]= +\left[ +\begin{array}{c c c c} +\displaystyle +L_i(r_g,s_g) & 0 & 0 & 0 \\ +\\ +0 & L_i(r_g,s_g) & 0 & 0 \\ +\\ +0 & 0 & 0 & L_i(r_g,s_g) \\ +\\ +0 & 0 & 0 & L_i(r_g,s_g) \\ +\end{array} +\right] +\end{equation*} +and +\begin{equation} +\displaystyle D=W_g \vert J_g \vert \left[ +\begin{array}{c c c c c} +\displaystyle \alpha^2 & 0 & 0 & 0 \\ +\\ +0 & \displaystyle \alpha^2 & 0 & 0 \\ +\\ +0 & 0 & \displaystyle n_x & 0 \\ +\\ +0 & 0 & 0 & \displaystyle n_y \\ +\end{array} +\right] \end{equation} + + + \subsection{Elementary load vector} +To compute the elementary load vector, we first calculate the force due to the driving stress only, the water pressure only, and we then add these two terms. + \subsubsection{Driving stress} + +The elementary load vector due to driving stress has the following shape: + +\begin{equation} +F1_{3i}= -\iiint_\Omega \rho g \phi_i d\Omega +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector become: + +\begin{equation} +F1_{3i}= - +\iiint_{\hat{E}} %triple +\rho g L_i(r,s,\zeta) \vert J \vert d\hat{\Omega} +\simeq +\sum_{g=1}^6 + - W_g \rho g \L_i(r_g,s_g,\zeta_g) \vert J_g \vert +\end{equation} + + \subsubsection{Ice front} +The load on the ice front involves only the nodes on the ice/sea interface. As with basal drag, only surface integrals are required. The elements are quadrangle (See section\ref{RE2D2}). The load on the ice front have the following shape: + +\begin{equation} +\begin{array}{l} +\displaystyle +F2_{3i-2}=\iint_{E \cap \Gamma_i} F_in_x\phi_i dS\\ +\\ +\displaystyle +F2_{3i-1}=\iint_{E \cap\Gamma_i} F_in_y\phi_i dS\\ +\\ +\displaystyle +F2_{3i}=\iint_{E \cap\Gamma_i} F_in_z\phi_i dS +\end{array} +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector become: + +\begin{equation} +\begin{array}{l l l} +\displaystyle +F2_{3i-2} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_i}} \hat{F_i}n_x L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^4 +W_g \rho_w g \min\left( 0,z\right) n_x L_i(r_g,s_g,\zeta_g) \vert J_g \vert \\ +\\ +\displaystyle +F2_{3i-1} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_i}} \hat{F_i}n_y L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^4 +W_g \rho_w g \min\left( 0,z\right) n_y L_i(r_g,s_g,\zeta_g) \vert J_g \vert \\ +\\ +\displaystyle +F2_{3i} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_i}} \hat{F_i}n_z L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^4 +W_g \rho_w g \min\left( 0,z\right)n_z L_i(r_g,s_g,\zeta_g) \vert J_g \vert +\end{array} +\end{equation} + + \subsubsection{Ice/water interface} +The load on the ice/water interface involves only the nodes at the base on the iceshelf. As with basal drag and ice front, only surface integrals are required. The elements are triangles. The load on the ice shelf base have the following shape: + +\begin{equation} +\begin{array}{l} +\displaystyle +F3_{3i-2}=\iint_{E \cap \Gamma_w} F_wn_x\phi_i dS\\ +\\ +\displaystyle +F3_{3i-1}=\iint_{E \cap\Gamma_w} F_wn_y\phi_i dS\\ +\\ +\displaystyle +F3_{3i}=\iint_{E \cap\Gamma_w} F_wn_z\phi_i dS +\end{array} +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector become: + +\begin{equation} +\begin{array}{l l l} +\displaystyle +F3_{2i-1} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_w}} \hat{F_w} n_x L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 +W_g \rho_w g b(r_g,s_g) n_x L_i(r_g,s_g) \vert J_g \vert \\ +\\ +\displaystyle +F3_{2i} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_w}} \hat{F_w} n_y L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 +W_g \rho_w g b(r_g,s_g) n_y L_i(r_g,s_g) \vert J_g \vert \\ +\\ +\displaystyle +F3_{2i} & \displaystyle =\iint_{\hat{E} \hat{\cup\Gamma_w}} \hat{F_w} n_y L_i \vert J \vert d\hat{S} +& +\displaystyle \simeq +\sum_{g=1}^3 +W_g \rho_w g b(r_g,s_g) n_y L_i(r_g,s_g) \vert J_g \vert +\end{array} +\end{equation} +\newpage + + \subsection{Collapsing of the seventh grid} +In order to use the same mesh for all the 3d models, we have to get rid of the grid located on the middle of the pentahedron. To do so, we have to collapse this grid and reduce the elementary matrix and load vector to the first six grids. \\ +\\ +The elementary equation before collapsing is: + +\begin{equation} +\left[\begin{array}{c c c|c} +&&&\\ +&K_{ii}&&K_{ib}\\ +&&&\\ +\hline +&K_{bi}&&K_{bb} +\end{array}\right] +\left[\begin{array}{c} +\\ +W_{i}\\ +\\ +\hline +W_{b} +\end{array}\right] += +\left[\begin{array}{c} +\\ +F_{i}\\ +\\ +\hline +F_{b} +\end{array}\right] +\end{equation} +\\ +where index $b$ relates to the seventh grid and index $i$ refers to the first six grids. $W$ contains all the unknows of the element, ie $u$, $v$, $w$, and $p$. So that $W_{i}$ has 24 components and $W_{b}$ has 3 components (there is no pressure on the seventh grid).\\ +\\ +We separate this system of equations in two parts as follows: + +\begin{equation} +\left\{\begin{array}{c} +K_{ii}W_i+K_{ib}W_b=F_i\\ +\\ +K_{bi}W_i+K_{bb}W_b=F_b +\end{array}\right. +\end{equation} +\\ +The second equation gives us $W_b=K_{bb}^{-1}\left(F_b-K_{bi}W_i\right)$ so that we can replace $W_b$ on the first equation. We now have a linear system on the first six grids. So we do solve the system on these six grids and use the same mesh as in the other 3d computations.\\ +\\ +The system to solve becomes: + +\begin{equation} +\begin{array}{|c|} +\hline +\\ +\displaystyle \left(K_{ii}-K_{ib}K_{bb}^{-1}K_{bi}\right)W_i=F_i-K_{ib}K_{bb}^{-1}F_b\\ +\\ +\hline +\end{array} +\end{equation} + +\newpage +\chapter{Thermal Model Finite Element Formulation} +The thermal equation (\ref{thermalequation}) involves a transient term $\dfrac{\partial T}{\partial t}$. This term can be neglected if the glacier is considered in a steady state. If it is not the case, this term must be taken into account and finite differences time domain scheme is required. +\section{Steady state} + + \subsection{Geometry and notations} + +The geometry is exactly the same as in the 3d models. We adopt the following notations: +\begin{itemize} + \item[--] $\Omega$ is the open surface that constitutes the entire glacier system + \item[--] $\partial\Omega$ are points located at the boundary + \item[--] $\Gamma_b$ are points at the interface between glacier and bedrock (Ice/Till interface $z=b$) + \item[--] $\Gamma_w$ are points at the interface between glacier and water. +\end{itemize} + + \subsection{Equations} + +For a steady state, one can neglect $\dfrac{\partial T}{\partial t}$. Given this assumption, the thermal equation (\ref{thermalequation}) is reduced to: + +\begin{equation} +u\dfrac{\partial T}{\partial x} +v\dfrac{\partial T}{\partial y} +w\dfrac{\partial T}{\partial z} = \dfrac{k}{ \rho c }\left( \dfrac{\partial^2 T}{\partial x^2}+\dfrac{\partial^2 T}{\partial y^2}+\dfrac{\partial^2 T}{\partial z^2}\right) +\dfrac{\Phi}{ \rho c } +\end{equation} +\\ +For the temperature computation, the melting is not taken into account. When the pressure melting point is reached, one will use penalty method to constrain this point to this temperature. Thus, the boundary conditions are limited to: +an imposed flux (Neumann) at the base of the grouded part, an imposed temperature (Dirichlet) on the lower surface of the floating part. The sides of the domain $\Gamma_u \cup \Gamma_i$ are treated as zero-flux surfaces. +It is more convenient to consider the imposed temperatures as nill. At the end of the process, the temperature field will be updated to take these +constraints into account. + +\begin{equation} +\left\{ \begin{array}{l l l } +\text{Icesheet base } \Gamma_b: & +\displaystyle \left. k \left( \overrightarrow{grad}\;T\right) \right| _b.\overrightarrow{n} = G + \overrightarrow{\tau}_b . \overrightarrow{u}_b\\ +\\ +\text{Iceshelf base } \Gamma_w: & +\displaystyle k\left. \left( \overrightarrow{grad}\;T\right) \right|_b.\overrightarrow{n} = -\rho_w c_{pM}\gamma\left(T_b-T_{pmp} \right) \\ +\\ +\text{Other borders } \Gamma_u\cup \Gamma_i:& \displaystyle \left( \overrightarrow{grad}\;T\right).\overrightarrow{n}=0 +\end{array} \right. +\end{equation} + \subsection{Weak Formulation} + +we write the weak formulation to solve the previous equation +using finite element. One defines an admissible thermal field $\theta$ such that: + +\begin{equation} +\theta(x,y,z)\in\lbrace \left( H^{1}(\Omega\cup\partial\Omega) \right) \quad \vert \quad \theta(x,y,z)=0\qquad (x,y,z)\in \partial \Omega \setminus \Gamma_b\rbrace +\end{equation} +\\ +For any virtual field as described above: + +\begin{equation} +\iiint_\Omega +\left[ +u\dfrac{\partial T}{\partial x} +v\dfrac{\partial T}{\partial y} +w\dfrac{\partial T}{\partial z} - \dfrac{k}{ \rho c } \left( \dfrac{\partial^2 T}{\partial x^2}+\dfrac{\partial^2 T}{\partial y^2}+\dfrac{\partial^2 T}{\partial z^2}\right) - \dfrac{\Phi}{ \rho c } +\right] \theta d\Omega =0 +\end{equation} +\\ +One intergrates by parts the conduction term in order to use the boundary conditions: + +\begin{multline} +\iiint_\Omega +\dfrac{k}{ \rho c } \left(\dfrac{\partial T}{\partial x}\dfrac{\partial \theta}{\partial x}+\dfrac{\partial T}{\partial y}\dfrac{\partial \theta}{\partial y} +\dfrac{\partial T}{\partial z}\dfrac{\partial \theta}{\partial z}\right) +d\Omega += +\iiint_\Omega +\left[ +- u\dfrac{\partial T}{\partial x} -v\dfrac{\partial T}{\partial y} -w\dfrac{\partial T}{\partial z} + \dfrac{\Phi}{ \rho c } +\right] \theta d\Omega\\ +\\ ++ +\iint_{\partial\Omega } +\dfrac{k}{ \rho c } \left(\dfrac{\partial T}{\partial x}\theta n_x+\dfrac{\partial T}{\partial y}\theta n_y+ \dfrac{\partial T}{\partial z}\theta n_z\right) +dS +\end{multline} +\\ +Where $\overrightarrow{n}=( n_x, n_y, n_z)$ is the unit normal vector pointing outward from the glacier. Since $\theta$ is admissible, the last integrale is nill except on $\Gamma_b$, where one can use the boundary condition: + +\begin{multline} +\iiint_\Omega +\dfrac{k}{ \rho c } \left(\dfrac{\partial T}{\partial x}\dfrac{\partial \theta}{\partial x}+\dfrac{\partial T}{\partial y}\dfrac{\partial \theta}{\partial y} +\dfrac{\partial T}{\partial z}\dfrac{\partial \theta}{\partial z}\right) +d\Omega += +\iiint_\Omega +\left[ +- u\dfrac{\partial T}{\partial x} -v\dfrac{\partial T}{\partial y} -w\dfrac{\partial T}{\partial z}+ \dfrac{\Phi}{ \rho c } +\right] \theta d\Omega \\ +\\ ++\iint_{\Gamma_w }\dfrac{\rho_w c_{pM}\gamma}{ \rho c } \left(T_{pmp} -T\right) \theta dS ++ +\iint_{\Gamma_b } +\dfrac{1}{ \rho c } \left(G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) \theta +dS +\end{multline} +\\ +By rearranging terms: + +\begin{multline} +\iiint_\Omega +\dfrac{k}{ \rho c }\left(\dfrac{\partial T}{\partial x}\dfrac{\partial \theta}{\partial x}+\dfrac{\partial T}{\partial y}\dfrac{\partial \theta}{\partial y} +\dfrac{\partial T}{\partial z}\dfrac{\partial \theta}{\partial z}\right) +d\Omega ++ +\iiint_\Omega +u\dfrac{\partial T}{\partial x}\theta +v\dfrac{\partial T}{\partial y}\theta +w\dfrac{\partial T}{\partial z}\theta +d\Omega \\ +\\ += +\iiint_\Omega +\dfrac{\Phi}{ \rho c } +\theta d\Omega ++\iint_{\Gamma_w }\dfrac{\rho_w c_{pM}\gamma}{ \rho c } \left(T_{pmp} -T\right) \theta dS ++ +\iint_{\Gamma_b } +\dfrac{1}{ \rho c } \left(G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) \theta +dS +\end{multline} +\\ + + + \subsection{Finite element discretisation, Galerkin method} + +The domain is meshed using pentahedrons. There are a $nel$ elements and $nods$ grids. We use the nodal functions of each grid, which are continuous on the domain and affine on each element. +We now project the unknown on the nodal functions: +\begin{center} + $(\phi_i)_{1\leq i\leq nods}$ +\end{center} +\begin{equation} +T\left( x,y,z\right) = \sum_{i=1}^{nods}T_{i}\theta_{i}\left( x,y,z\right) \\ +\end{equation} +\\ +We build a vector $T$ that holds all the unknowns: + +\begin{equation} +T=\left[ \begin{array}{c} +T_{1}\\ +...\\ +T_{nods} + \end{array} \right] +\end{equation} +\\ +With this new field, we have the following equations: +\begin{center} + $\forall 1 \leq i \leq nods$ +\end{center} +\begin{multline} +\sum_{j=1}^{nods} +\iiint_\Omega +\dfrac{k}{ \rho c }\left(\dfrac{\partial T_j\theta_j}{\partial x}\dfrac{\partial \theta_i}{\partial x}+\dfrac{\partial T_j\theta_j}{\partial y}\dfrac{\partial \theta_i}{\partial y}+ \dfrac{\partial T_j\theta_j}{\partial z}\dfrac{\partial \theta_i}{\partial z}\right) +d\Omega ++ +\iiint_\Omega +u\dfrac{\partial T_j\theta_j}{\partial x}\theta_i +v\dfrac{\partial T_j\theta_j}{\partial y}\theta_i +w\dfrac{\partial T_j\theta_j}{\partial z}\theta_i +d\Omega\\ +\\ += +\iiint_\Omega + \dfrac{\Phi}{ \rho c } +\theta_i d\Omega ++ +\iint_{\Gamma_w } +\dfrac{\rho_w c_{pM}\gamma}{ \rho c } \left(T_{pmp} -\sum_{j=1}^{nods}T_j \theta_j\right)\theta_i +dS ++ +\iint_{\Gamma_b } +\dfrac{1}{ \rho c } \left(G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) \theta_i +dS +\end{multline} +\\ +One can extract $T_j$: + +\begin{multline*} +\sum_{j=1}^{nods}\left[ +\iiint_\Omega +\dfrac{k}{ \rho c }\left(\dfrac{\partial \theta_j}{\partial x}\dfrac{\partial \theta_i}{\partial x}+\dfrac{\partial \theta_j}{\partial y}\dfrac{\partial \theta_i}{\partial y}+ \dfrac{\partial \theta_j}{\partial z}\dfrac{\partial \theta_i}{\partial z}\right) +d\Omega \right. \\ +\\ +\left. ++ +\iiint_\Omega +u\dfrac{\partial \theta_j}{\partial x}\theta_i +v\dfrac{\partial \theta_j}{\partial y}\theta_i +w\dfrac{\partial \theta_j}{\partial z}\theta_i +d\Omega ++ +\iint_{\Gamma_w } +\dfrac{\rho_w c_{pM}\gamma}{ \rho c } \theta_j\theta_i +dS \right] T_j\\ +\\ += +\iiint_\Omega +\dfrac{\Phi}{ \rho c } +\theta_i d\Omega ++ +\iint_{\Gamma_w } +\dfrac{\rho_w c_{pM}\gamma}{ \rho c }T_{pmp}\theta_i +dS ++ +\iint_{\Gamma_b } +\dfrac{1}{ \rho c } \left(G + \overrightarrow{\tau}_b . \overrightarrow{u}_b\right) \theta_i +dS +\end{multline*} +\\ +We see the stiffness matrix $K$ and load vector $F$ appearing, so that the previous equations can be written as a system matrix : + +\begin{equation} +\left[ K \right] T =F +\label{FET} +\end{equation} +\\ +We use the following index: + +\begin{equation} +\left[ +\begin{array}{c c c} %K + & \vdots &\\ + \cdots & K_{ij} & \cdots\\ + & \vdots &\\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +T_i\\ +\vdots\\ +\end{array} +\right] += +\left[ +\begin{array}{c} %F +\vdots \\ +F_{i}\\ +\vdots\\ +\end{array} +\right] +\end{equation} +\\ +And we have the following expressions for the stiffness matrix and the load vector : + +\begin{equation} +\begin{array}{l c l} +\displaystyle +K_{i,j} & = &\displaystyle +\iiint_\Omega +\dfrac{k}{ \rho c }\left(\dfrac{\partial \theta_j}{\partial x}\dfrac{\partial \theta_i}{\partial x}+\dfrac{\partial \theta_j}{\partial y}\dfrac{\partial \theta_i}{\partial y}+ \dfrac{\partial \theta_j}{\partial z}\dfrac{\partial \theta_i}{\partial z}\right) +d\Omega\\ +\\ +&& \displaystyle ++ +\iiint_\Omega +u\dfrac{\partial \theta_j}{\partial x}\theta_i +v\dfrac{\partial \theta_j}{\partial y}\theta_i +w\dfrac{\partial \theta_j}{\partial z}\theta_i +d\Omega + +\iint_{\Gamma_w } +\dfrac{\rho_w c_{pM}\gamma}{ \rho c } \theta_j\theta_i +dS +\\ +\\ +F_{i} &=&\displaystyle +\iiint_\Omega +\dfrac{\Phi}{ \rho c } +\theta_i d\Omega ++ +\iint_{\Gamma_w } +\dfrac{\rho_w c_{pM}\gamma}{ \rho c } T_{pmp}\theta_i +dS\\ +\\ +&& \displaystyle ++ +\iint_{\Gamma_b } +\dfrac{1}{ \rho c } \left(G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) \theta_i +dS\\ +\end{array} +\end{equation} + + \subsection{Decomposition over the elements and reference element} +See same section in Pattyn's Model. +One element $E$ gives 6 equations: we can take 6 nodal functions for $\theta_i(x,y,z)$ (the nodal functions corresponding to the vertexes of $E$, which is an pentahedron), each $\theta_i$ gives 1 equation. Therefore, an elementary stiffness matrix $K_E$ will be $6 \times 6$, and the elementary load vector will be of size $6$. +\newpage + \subsection{Elementary stiffness matrix} +The elementary stiffness matrix is divided into 3 matrices: one conduction stiffness matrix, one advection stiffness matrix, and one ocean/ice heat exchange stiffness matrix. + + \subsubsection{Conduction stiffness matrix} +This matrix has the following shape: + +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation} +K1_{i,j} = +\iiint_E +\dfrac{k}{ \rho c }\left(\dfrac{\partial \theta_j}{\partial x}\dfrac{\partial \theta_i}{\partial x}+\dfrac{\partial \theta_j}{\partial y}\dfrac{\partial \theta_i}{\partial y}+ \dfrac{\partial \theta_j}{\partial z}\dfrac{\partial \theta_i}{\partial z}\right) +dV +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix becomes: +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation*} +\begin{array}{l c l} +K1_{i,j} &=& \displaystyle +\iiint_{\hat{E}} %triple + \left( +\dfrac{k}{ \rho c }\left(\dfrac{\partial L_j}{\partial \varphi_x}\dfrac{\partial L_i}{\partial \varphi_x} ++\dfrac{\partial L_j}{\partial \varphi_y}\dfrac{\partial L_i}{\partial \varphi_y} ++ \dfrac{\partial L_j}{\partial \varphi_z}\dfrac{\partial L_i}{\partial \varphi_z}\right) + \right) \vert J \vert d\hat{V} \\ + \\ + & \simeq & \displaystyle +\sum_{g=1}^6 W_g \left( +\dfrac{k}{ \rho c }\left( \left.\dfrac{\partial L_j}{\partial \varphi_x} \right|_g \left.\dfrac{\partial L_i}{\partial \varphi_x} \right|_g ++ \left.\dfrac{\partial L_j}{\partial \varphi_y} \right|_g \left.\dfrac{\partial L_i}{\partial \varphi_y} \right|_g ++ \left.\dfrac{\partial L_j}{\partial \varphi_z} \right|_g \left.\dfrac{\partial L_i}{\partial \varphi_z} \right|_g\right) +\right) \vert J_g \vert +\end{array} +\end{equation*} + +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K1= \sum_{g=1}^6 [B]^T[D][B]$ as follows: +\\ +\begin{equation} +[B]=\left[\begin{array}{c c c c c c} +B_1 & B_2 & B_3 & B_4 & B_5 & B_6 +\end{array}\right] +\end{equation} +\\ +with: + +\begin{equation} +B_i=\left[\begin{array}{c} +\left.\dfrac{\partial L_i}{\partial \varphi_x}\right|_g\\ +\\ +\left.\dfrac{\partial L_i}{\partial \varphi_y}\right|_g\\ +\\ +\left.\dfrac{\partial L_i}{\partial \varphi_z}\right|_g +\end{array}\right] +\end{equation} +\\ +and +\begin{equation} +\displaystyle D= W_g \vert J_g \vert \dfrac{k}{ \rho c } \end{equation} + + \subsubsection{Advection stiffness matrix} +This matrix has the following shape: + +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation} +K2_{i,j} = +\iiint_E +u\dfrac{\partial \theta_j}{\partial x}\theta_i +v\dfrac{\partial \theta_j}{\partial y}\theta_i +w\dfrac{\partial \theta_j}{\partial z}\theta_i +dV +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix becomes: +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation} +\begin{array}{r c l} +K2_{i,j} & = & \displaystyle +\iiint_{\hat{E}} %triple + \left( +u\dfrac{\partial L_j}{\partial \varphi_x}L_i +v\dfrac{\partial L_j}{\partial \varphi_y}L_i +w\dfrac{\partial L_j}{\partial \varphi_z}L_i + \right) \vert J \vert d\hat{V} \\ + \\ + & \simeq & \displaystyle +\sum_{g=1}^6 W_g \left( +u\left(g \right) \left.\dfrac{\partial L_j}{\partial \varphi_x}\right|_g L_i\left(g \right) +v\left(g \right)\left.\dfrac{\partial L_j}{\partial \varphi_y}\right|_g L_i \left(g \right) +w\left(g \right)\left.\dfrac{\partial L_j}{\partial \varphi_z}\right|_g L_i\left(g \right) +\right) \vert J_g \vert +\end{array} +\end{equation} +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K2= \sum_{g=1}^6 [B]^T[D][B']$ as follows: + +\begin{equation} +[B]=\left[\begin{array}{c c c c c c} +B_1 & B_2 & B_3 & B_4 & B_5 & B_6 +\end{array}\right] +\end{equation} +\\ +with: + +\begin{equation} +B_i=\left[\begin{array}{c} +L_i(g)\\ +\\ +L_i(g)\\ +\\ +L_i(g) +\end{array}\right] +\quad +B_i'=\left[\begin{array}{c} +\left.\dfrac{\partial L_i}{\partial \varphi_x}\right|_g\\ +\\ +\left.\dfrac{\partial L_i}{\partial \varphi_y}\right|_g\\ +\\ +\left.\dfrac{\partial L_i}{\partial \varphi_z}\right|_g\\ +\end{array}\right] +\end{equation} +\\ +and +\begin{equation} +\displaystyle D= W_g \vert J_g \vert +\left[\begin{array}{c c c} +\displaystyle \sum_{k=1}^6 u_k L_k(g) & 0 & 0 \\ +0 & \displaystyle \sum_{k=1}^6 v_k L_k(g) & 0\\ +0 & 0 & \displaystyle \sum_{k=1}^6 w_k L_k(g) +\end{array}\right] \end{equation} + + \subsubsection{Ocean/ice heat exchange} + +This elementary stiffness has the following shape: + +\begin{center} + $1 \leq i \leq 3$ and $1 \leq j \leq 3$ +\end{center} +\begin{equation} +K3_{i,j} = +\iint_{\Gamma_w \cap E } +\dfrac{\rho_w c_{pM}\gamma}{ \rho c }\theta_j\theta_i +dS +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector becomes: +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\begin{equation} +\begin{array}{r c l} +K3_{i,j} & = & \displaystyle +\iint_{\Gamma_w \cap \hat{E} } +\dfrac{\rho_w c_{pM}\gamma}{ \rho c }L_j L_i +\vert J \vert d\hat{S}\\ +\\ +& \simeq & \displaystyle +\sum_{g=1}^3 W_g \vert J_g \vert +\dfrac{\rho_w c_{pM}\gamma}{ \rho c }L_j(g)L_i(g) +\end{array} +\end{equation} +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K3= \sum_{g=1}^3 [B]^T[D][B]$ as follows: + +\begin{equation} +[B]=\left[\begin{array}{c c c} +B_1 & B_2 & B_3 +\end{array}\right] \quad \text{and} \quad D= W_g \vert J_g \vert \dfrac{\rho_w c_{pM}\gamma}{ \rho c } +\end{equation} +with: +\begin{equation} +B_i=L_i(g) +\end{equation} + +\newpage + \subsection{Elementary load vector} + + \subsubsection{Deformational heating} + +This elementary load vector has the following shape: + +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\begin{equation} +F_{i} = +\iiint_E +\dfrac{\Phi}{ \rho c } +\theta_i d\Omega +dV +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector becomes: +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\begin{equation} +F_{i} = +\iiint_{\hat{E}} %triple +\dfrac{\Phi}{ \rho c } + L_i \vert J \vert d\hat{V} + = +\sum_{g=1}^6 W_g \vert J_g \vert +\dfrac{\Phi (g)}{ \rho c } +L_i(g) +\end{equation} + + + \subsubsection{Basal heating} + +This elementary load vector has the following shape: + +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\begin{equation} +F_{i} = +\iint_{\Gamma_b \cap E } +\dfrac{1}{ \rho c } \left( G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) \theta_i +dS +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector becomes: +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\begin{equation} +\begin{array}{r c l} +F_{i} & = & \displaystyle +\iint_{\Gamma_b \cap \hat{E} } +\dfrac{1}{ \rho c } \left( G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) L_i +\vert J \vert d\hat{S}\\ +\\ +& \simeq & \displaystyle +\sum_{g=1}^3 W_g \vert J_g \vert +\dfrac{1}{ \rho c } \left( G(g) + \overrightarrow{\tau}_b(g) . \overrightarrow{u}_b(g)\right) L_i(g) +\end{array} +\end{equation} +Only the nodal functions assigned to the nodes on $\Gamma_b$ are involved. + + + \subsubsection{Ocean/ice heat exchange} + +This elementary load vector has the following shape: + +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\begin{equation} +F_{i} = +\iint_{\Gamma_w \cap E } +\dfrac{\rho_w c_{pM}\gamma}{ \rho c }T_{pmp}\theta_i +dS +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector becomes: +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\begin{equation} +\begin{array}{r c l} +F_{i} & = & \displaystyle +\iint_{\Gamma_w \cap \hat{E} } +\dfrac{\rho_w c_{pM}\gamma}{ \rho c }T_{pmp} L_i +\vert J \vert d\hat{S}\\ +\\ +& \simeq & \displaystyle +\sum_{g=1}^3 W_g \vert J_g \vert +\dfrac{\rho_w c_{pM}\gamma}{ \rho c }T_{pmp}(g)L_i(g) +\end{array} +\end{equation} +Only the nodal functions assigned to the nodes on $\Gamma_w$ are involved. + +\newpage +\section{Transient} + + \subsection{Equations} + +This time, one cannot neglect $\dfrac{\partial T}{\partial t}$. The equation is the same as in the first chapter (\ref{thermalequation}): + +\begin{equation} +\dfrac{\partial T}{\partial t}= -\left( u\dfrac{\partial T}{\partial x} +v\dfrac{\partial T}{\partial y} +w\dfrac{\partial T}{\partial z} \right)+ \dfrac{k}{ \rho c }\left( \dfrac{\partial^2 T}{\partial x^2}+\dfrac{\partial^2 T}{\partial y^2}+\dfrac{\partial^2 T}{\partial z^2}\right) +\dfrac{\Phi}{ \rho c } +\end{equation} +\\ +The boundary conditions are the same as in the previous chapter. + + \subsection{Weak Formulation} + +The weak formulation is the same as in the previoous chapter with the transient term: + +\begin{multline} +\iiint_\Omega +\dfrac{k}{ \rho c }\left(\dfrac{\partial T}{\partial x}\dfrac{\partial \theta}{\partial x}+\dfrac{\partial T}{\partial y}\dfrac{\partial \theta}{\partial y} +\dfrac{\partial T}{\partial z}\dfrac{\partial \theta}{\partial z}\right) +d\Omega ++ +\iiint_\Omega +u\dfrac{\partial T}{\partial x}\theta +v\dfrac{\partial T}{\partial y}\theta +w\dfrac{\partial T}{\partial z}\theta +d\Omega \\ +\\ += +\iiint_\Omega +\left( +-\dfrac{\partial T}{\partial t} + \dfrac{\Phi}{ \rho c } +\right) \theta d\Omega ++ +\iint_{\Gamma_b } +\dfrac{1}{ \rho c } \left(G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) \theta +dS +\end{multline} + + \subsection{Finite difference scheme} +To evaluate the transient term, one uses a finite differences time domain scheme. For a given time step $i$, the transient term is computed implicitly\footnote{an implicit method is much more stable for this kind of equation} as follow: + +\begin{equation} +\left. \dfrac{\partial T}{\partial t}\right|_{i} =\dfrac{T_{i}-T_{i-1}}{\Delta t } +\end{equation} +\\ +Where $\Delta t$ is the time difference between $t_{i}$ and $t_{i-1}$. The weak formuation becomes: + +\begin{multline} +\iiint_\Omega +\dfrac{k}{ \rho c }\left(\dfrac{\partial T_{i}}{\partial x}\dfrac{\partial \theta}{\partial x}+\dfrac{\partial T_{i}}{\partial y}\dfrac{\partial \theta}{\partial y} +\dfrac{\partial T_{i}}{\partial z}\dfrac{\partial \theta}{\partial z}\right) +d\Omega ++ +\iiint_\Omega +u\dfrac{\partial T_{i}}{\partial x}\theta +v\dfrac{\partial T_{i}}{\partial y}\theta +w\dfrac{\partial T_{i}}{\partial z}\theta +d\Omega \\ +\\ += +\iiint_\Omega +\left( +-\dfrac{T_{i}-T_{i-1}}{\Delta t } + \dfrac{\Phi}{ \rho c } +\right) \theta d\Omega ++ +\iint_{\Gamma_b } +\dfrac{1}{ \rho c } \left(G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) \theta +dS +\end{multline} +\\ +By rearranging terms: + +\begin{multline} +\iiint_\Omega +T_{i} +\theta d\Omega ++ +\Delta t \iiint_\Omega +\dfrac{k}{ \rho c }\left(\dfrac{\partial T_{i}}{\partial x}\dfrac{\partial \theta}{\partial x}+\dfrac{\partial T_{i}}{\partial y}\dfrac{\partial \theta}{\partial y} +\dfrac{\partial T_{i}}{\partial z}\dfrac{\partial \theta}{\partial z}\right) +d\Omega ++ +\Delta t \iiint_\Omega +u\dfrac{\partial T_{i}}{\partial x}\theta +v\dfrac{\partial T_{i}}{\partial y}\theta +w\dfrac{\partial T_{i}}{\partial z}\theta +d\Omega \\ +\\ += +\iiint_\Omega +T_{i-1}\theta d\Omega ++ +\Delta t \iiint_\Omega +\dfrac{\Phi}{ \rho c } +\theta d\Omega ++ +\Delta t \iint_{\Gamma_b } +\dfrac{1}{ \rho c } \left(G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) \theta +dS +\end{multline} +\newpage + \subsection{Elementary stiffness matrix} +The elementary stiffness matrix is very similar to the one of the steady state case: all the previous matrices are multiplied by $\Delta t$, and a transient term is added: + + \subsubsection{Conduction stiffness matrix} +This matrix has the following shape: + +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation} +K1_{i,j} = +\Delta t\iiint_E +\dfrac{k}{ \rho c }\left(\dfrac{\partial \theta_j}{\partial x}\dfrac{\partial \theta_i}{\partial x}+\dfrac{\partial \theta_j}{\partial y}\dfrac{\partial \theta_i}{\partial y}+ \dfrac{\partial \theta_j}{\partial z}\dfrac{\partial \theta_i}{\partial z}\right) +dV +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix becomes: +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation*} +\begin{array}{l c l} +K1_{i,j} &=& \displaystyle +\Delta t\iiint_{\hat{E}} %triple + \left( +\dfrac{k}{ \rho c }\left(\dfrac{\partial L_j}{\partial \varphi_x}\dfrac{\partial L_i}{\partial \varphi_x} ++\dfrac{\partial L_j}{\partial \varphi_y}\dfrac{\partial L_i}{\partial \varphi_y} ++ \dfrac{\partial L_j}{\partial \varphi_z}\dfrac{\partial L_i}{\partial \varphi_z}\right) + \right) \vert J \vert d\hat{V} \\ + \\ + & \simeq & \displaystyle +\sum_{g=1}^6 W_g \Delta t\left( +\dfrac{k}{ \rho c }\left( \left.\dfrac{\partial L_j}{\partial \varphi_x} \right|_g \left.\dfrac{\partial L_i}{\partial \varphi_x} \right|_g ++ \left.\dfrac{\partial L_j}{\partial \varphi_y} \right|_g \left.\dfrac{\partial L_i}{\partial \varphi_y} \right|_g ++ \left.\dfrac{\partial L_j}{\partial \varphi_z} \right|_g \left.\dfrac{\partial L_i}{\partial \varphi_z} \right|_g\right) +\right) \vert J_g \vert +\end{array} +\end{equation*} + +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K1= \sum_{g=1}^6 [B]^T[D][B]$ as follows: +\\ +\begin{equation} +[B]=\left[\begin{array}{c c c c c c} +B_1 & B_2 & B_3 & B_4 & B_5 & B_6 +\end{array}\right] +\end{equation} +\\ +with: + +\begin{equation} +B_i=\left[\begin{array}{c} +\left.\dfrac{\partial L_i}{\partial \varphi_x}\right|_g\\ +\\ +\left.\dfrac{\partial L_i}{\partial \varphi_y}\right|_g\\ +\\ +\left.\dfrac{\partial L_i}{\partial \varphi_z}\right|_g +\end{array}\right] +\end{equation} +\\ +and +\begin{equation} +\displaystyle D= W_g \vert J_g \vert \Delta t\dfrac{k}{ \rho c } \end{equation} + + \subsubsection{Advection stiffness matrix} +This matrix has the following shape: + +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation} +K2_{i,j} = +\Delta t\iiint_E +u\dfrac{\partial \theta_j}{\partial x}\theta_i +v\dfrac{\partial \theta_j}{\partial y}\theta_i +w\dfrac{\partial \theta_j}{\partial z}\theta_i +dV +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this matrix becomes: +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\begin{equation} +\begin{array}{r c l} +K2_{i,j} & = & \displaystyle +\Delta t\iiint_{\hat{E}} %triple + \left( +u\dfrac{\partial L_j}{\partial \varphi_x}L_i +v\dfrac{\partial L_j}{\partial \varphi_y}L_i +w\dfrac{\partial L_j}{\partial \varphi_z}L_i + \right) \vert J \vert d\hat{V} \\ + \\ + & \simeq & \displaystyle +\sum_{g=1}^6 W_g \Delta t\left( +u\left(g \right) \left.\dfrac{\partial L_j}{\partial \varphi_x}\right|_g L_i\left(g \right) +v\left(g \right)\left.\dfrac{\partial L_j}{\partial \varphi_y}\right|_g L_i \left(g \right) +w\left(g \right)\left.\dfrac{\partial L_j}{\partial \varphi_z}\right|_g L_i\left(g \right) +\right) \vert J_g \vert +\end{array} +\end{equation} +\\ +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K2= \sum_{g=1}^6 [B]^T[D][B']$ as follows: + +\begin{equation} +[B]=\left[\begin{array}{c c c c c c} +B_1 & B_2 & B_3 & B_4 & B_5 & B_6 +\end{array}\right] +\end{equation} +\\ +with: + +\begin{equation} +B_i=\left[\begin{array}{c} +L_i(g)\\ +\\ +L_i(g)\\ +\\ +L_i(g) +\end{array}\right] +\quad +B_i'=\left[\begin{array}{c} +\left.\dfrac{\partial L_i}{\partial \varphi_x}\right|_g\\ +\\ +\left.\dfrac{\partial L_i}{\partial \varphi_y}\right|_g\\ +\\ +\left.\dfrac{\partial L_i}{\partial \varphi_z}\right|_g\\ +\end{array}\right] +\end{equation} +\\ +and +\begin{equation} +\displaystyle D= W_g \vert J_g \vert \Delta t +\left[\begin{array}{c c c} +\displaystyle \sum_{k=1}^6 u_k L_k(g) & 0 & 0 \\ +0 & \displaystyle \sum_{k=1}^6 v_k L_k(g) & 0\\ +0 & 0 & \displaystyle \sum_{k=1}^6 w_k L_k(g) +\end{array}\right] \end{equation} + + \subsubsection{Transient} + +The transient stiffness matrix has the following shape + +\begin{equation} +K_{i,j} = +\iint_{E} \theta_j \phi_i dV \\ +\end{equation} +\\ +We now use gaussian points for the integration : + +\begin{center} + $1 \leq i \leq 6$ and $1 \leq j \leq 6$ +\end{center} +\medskip +\begin{equation} +\begin{array}{c l} +\displaystyle +K_{i,j} & \displaystyle = +\iint_{\hat{E}} L_j L_i \vert J \vert d\hat{V}\\ +\\ +& \displaystyle \simeq +\sum_{g=1}^6 W_g L_j(g) L_i(g) \vert J_g \vert +\end{array} +\end{equation} +\\ +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K3= \sum_{g=1}^3 [B]^T[D][B]$ as follows: + +\begin{equation} +[B]=\left[\begin{array}{c c c c c c} +B_1 & B_2 & B_3 & B_4 & B_5 & B_6 +\end{array}\right] \quad \text{and} \quad D=W_g \vert J_g \vert +\end{equation} +with: +\begin{equation} +B_i= L_i(g ) +\end{equation}\\ +\newpage + \subsection{Elementary load vector} + + \subsubsection{Deformational heating} + +This elementary load vector has the following shape: + +\begin{center} + $1 \leq j \leq 6$ +\end{center} +\begin{equation} +F_{j} = +\iiint_E +\left( +-\dfrac{\partial T}{\partial t}+ \dfrac{\Phi}{ \rho c } +\right) \theta_j d\Omega +dV +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector becomes: +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\begin{equation} +F_{j} = +\iiint_{\hat{E}} %triple +\left( +-\dfrac{\partial T}{\partial t} ++ \dfrac{\Phi}{ \rho c } +\right) L_j \vert J \vert d\hat{V} + = +\sum_{g=1}^6 W_g \vert J_g \vert +\left( +-\left. \dfrac{\partial T}{\partial t}\right|_g ++ \dfrac{\Phi (g)}{ \rho c } +\right) L_j(g) +\end{equation} + + + \subsubsection{Basal heating} + +This elementary load vector has the following shape: + +\begin{center} + $1 \leq i \leq 6$ +\end{center} +\begin{equation} +F_{j} = +\iint_{\Gamma_b \cap E } +\dfrac{1}{ \rho c } \left( G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) \theta_j +dS +\end{equation} +\\ +Using the reference element $\hat{E}$ and the gaussian points, this vector becomes: +\begin{center} + $1 \leq j \leq 6$ +\end{center} +\begin{equation} +\begin{array}{r c l} +F_{j} & = & \displaystyle +\iint_{\Gamma_b \cap \hat{E} } +\dfrac{1}{ \rho c } \left( G + \overrightarrow{\tau}_b . \overrightarrow{u}_b \right) L_j +\vert J \vert d\hat{S}\\ +\\ +& \simeq & \displaystyle +\sum_{g=1}^3 W_g \vert J_g \vert +\dfrac{1}{ \rho c } \left( G(g) + \overrightarrow{\tau}_b(g) . \overrightarrow{u}_b(g)\right) L_j(g) +\end{array} +\end{equation} +Only the nodal functions assigned to the nodes on $\Gamma_b$ are involved. + + \subsubsection{Transient} + +The transient load vector has the following shape\footnote{NB: $T_i$ stands for the time step $i$ temperature field}: + +\begin{equation} +\displaystyle F_{j} =\iint_{E} T_i \theta_j \vert J \vert dV +\end{equation} +\\ +We now use gaussian points for the integration : + +\begin{center} +$1 \leq j \leq 6$ +\end{center} +\medskip +\begin{equation} +\begin{array}{c l} +\displaystyle +F_{j} & \displaystyle = +\iint_{\hat{E}} T_i L_j \vert J \vert d\hat{V}\\ +\\ +& \displaystyle \simeq +\sum_{g=1}^6 W_g T_i(g) L_j(g) \vert J_g \vert +\end{array} +\end{equation} + + +\newpage +\chapter{Prognostic Finite Element Formulation} + + \section{Introduction: presentation of the problem} + +For transient computation, one uses a finite differences time domain scheme. For each time step, the velocity is computed as well as the temperature (taken as transient). But to compute the next time step, one needs to update the glacier's geometry: the thickness evolution is required. This is done thanks to equation (\ref{prognosticequation}): + +\begin{equation} +\dfrac{\partial H}{\partial t} = - div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right)+ \dot{M}_s - \dot{M}_b +\label{prog1} +\end{equation} +\\ +We implemented this model using an implicit finite difference approximation for time: + +\begin{equation} +\dfrac{H\left(t_{i+1}\right) -H\left(t_{i}\right) }{\Delta t} \simeq - div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right)+ \dot{M}_s - \dot{M}_b +\label{progBad} +\end{equation} +\\ +But doing so introduces a negative diffusion term that leads to unstable solutions. To avoid wiggly solutions, we use the classical technique of adding an \emph{artificial diffusivity}. For a square ice shelf with an accumulation of 10 m/year it gives: +\begin{figure}[H] + \centering \hspace*{-1cm} + \subfloat[Initial thickness]{\includegraphics[width=6.7cm]{progi.png}} + \hspace*{-1cm} + \subfloat[Final thickness]{\includegraphics[width=6.7cm]{prog2.png}} + \hspace*{-1cm} + \subfloat[With artificial diffusivity]{\includegraphics[width=6.7cm]{prog1.png}} +\caption{Results of the prognostic model for a square ice shelf after 100 years}\label{prog} +\end{figure} + + \section{Why is the solution unstable?} + +To make things simpler, we will consider a one-dimensional problem with a constant velocity $u$ with no melting and no accumulation: + +\begin{equation} +\dfrac{\partial H}{\partial t}=-u\dfrac{\partial H}{\partial x} +\label{prog2} +\end{equation} +\\ +With an implicit finite difference scheme for time, we are actually solving: + +\begin{equation} +\dfrac{H\left(t_{i+1}\right) -H\left(t_{i}\right) }{\Delta t} +=-u\dfrac{\partial H\left( t_i\right) }{\partial x} +\label{prog3} +\end{equation} +\\ +A Taylor development to the order 2 gives: + +\begin{equation} +\left.\dfrac{\partial H}{\partial t}\right|_{t_i} +=\dfrac{H\left(t_{i+1}\right) -H\left(t_{i}\right) }{\Delta t} -\dfrac{\Delta t}{2}\left.\dfrac{\partial^2 H}{\partial t^2}\right|_{t_i} +\BigO{\Delta t^2} +\label{taylor} +\end{equation} +\\ +Therefore, the exact solution of (\ref{prog2}) is: + +\begin{equation} +\dfrac{H\left(t_{i+1}\right) -H\left(t_{i}\right) }{\Delta t} += - u\dfrac{\partial H\left(t_i \right) }{\partial x}+\dfrac{\Delta t}{2}\left.\dfrac{\partial^2 H}{\partial t^2}\right|_{t_i} +\BigO{\Delta t^2} +\label{prog4} +\end{equation} +\\ +But by solving (\ref{prog3}) only, we are actually neglecting the last term. By doing so, we are actually solving: + +\begin{equation} +\dfrac{\partial H}{\partial t} +=-u\dfrac{\partial H}{\partial x}\color{red} -\dfrac{\Delta t}{2}\dfrac{\partial^2 H}{\partial t^2}\color{black} +\label{prog4} +\end{equation} +\\ +We have the following property (progressive waves equation): + +\begin{equation} +\dfrac{\partial^2 H}{\partial t^2} += \dfrac{\partial}{\partial t} \left( -u\dfrac{\partial H}{\partial x}\right)=u^2\dfrac{\partial^2 H}{\partial x^2} +\end{equation} +\\ +Therefore, the solution of (\ref{prog3}) is the same as the solution of the following diffusion equation in which the diffusion coefficient is negative: + +\begin{equation} +\dfrac{\partial H}{\partial t} +=-u\dfrac{\partial H}{\partial x}\color{red} -\dfrac{\Delta t}{2}u^2\dfrac{\partial^2 H}{\partial x^2}\color{black} +\label{prog5} +\end{equation} +\\ +This negative diffusion term that leads to unstable solutions: progressive waves of $H$ (oscillations) are exponentially growing with time. + + \section{Streamline upwind / Petrov Galerkin formulation} + +It can be shown that for finite differences, a cure for the unwanted wiggles is provided by use of upwind differences to approximate the convective term, which essentially introduces a truncation error having the form of a physical diffusion. This term is a "balancing-diffusion" that is counteracting the negative diffusion introduced by the truncation error. By so doing, the numerical solution will yield exact values at the nodes. +In addition to directly adding a diffusion term, similar effects of stabilization can be achieved in finite difference through +According to Brooks and Hughes (1982), the artificial diffusion is only desirable and required in the direction of the +flow vector. The schemes eliminated the crosswind diffusion, which unnecessarily overdiffuses. This technique is named the \emph{streamline upwind/Petrov-Galerkin} (SUPG) formulation.\\ +\\ +For finite elements, a conventional Galerkin finite element discretization is employed with the same additional artificial diffusion: + +\begin{equation} +\dfrac{\partial H}{\partial t} = - div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right)+ \dot{M}_s - \dot{M}_b +div\left( \underline{\kappa}\; \overrightarrow{grad}H\right) +\label{prog2} +\end{equation} +\\ +where $\underline{\kappa}$ is a $2\times 2$ diffusivity tensor designed to diffuse along flowlines and minimize diffusion across flowlines. According to MacAyeal\cite{{Macayeal1997}} (p172), for a given element $E$ of the mesh it has the following expression: + +\begin{equation} +\underline{\kappa}=\left(\dfrac{\sqrt{2Area(E)}}{2} \right) +\left[ +\begin{array}{c c} +\displaystyle \dfrac{1}{3}\left| \sum_{i=1}^3 u_i\right| & 0\\ +0 & \displaystyle \dfrac{1}{3}\left| \sum_{i=1}^3 v_i\right| +\end{array}\right] = +\left[ +\begin{array}{c c} +\kappa_{xx} & 0\\ +0 & \kappa_{yy} +\end{array}\right] +\end{equation} +\\ +where $\left( u_i v_i\right)$ are the nodal values of the depth averaged horizontal velocity components. The artificial diffusivity tensor is designed to give about the same damping as that which would be associated with upwind differencing if the finite-element mesh consisted of a 2d regular array of nodes similar to a finite difference grid. (The absolute value of the local velocity is used in defining $\underline{\kappa}$ to ensure the diffusivity will always be positive). The addition of artificial diffusion bumps the prognostic equation up to a higher order (two spatial derivatives instead of one are now involved), and this necessitates specifying additional boundary conditions. For our purposes, we might as well take $\overrightarrow{grad}H.\overrightarrow{n} = 0$ on all portions of $\partial \Omega$. + + \section{Weak Formulation} +Here, the domain $\Omega$ is a 2d domain (since $H$ only depends on $x$ and $y$). We define a kinematically admissible velocity field $\overrightarrow{\phi}$: + +\begin{equation} +\phi(x,y)\in\lbrace H^{1}(\Omega\cup\partial\Omega)\rbrace +\end{equation} +\\ +For any function of this virtual field, we can take the product of the equation (\ref{prog2}) with $\phi$, and integrate this product over the domain. This gives us: + +\begin{equation} +\iint_\Omega %triple +\dfrac{\partial H}{\partial t}\phi + div \left( H \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right)\phi- \dot{M}_s\phi + \dot{M}_b\phi +-div\left( \underline{\kappa}\; \overrightarrow{grad}H_{i}\right) \phi +d\Omega =0 +\end{equation} +\\ +Exactly as in the transient thermal section, one uses a finite differences time domain scheme to evaluate the transient term. For a given time step $n$, the transient term is computed implicitly\footnote{an implicit method is much more stable for this kind of equation} as follow: + +\begin{equation} +\left. \dfrac{\partial H}{\partial t}\right|_{n} =\dfrac{H_{n}-H_{n-1}}{\Delta t } +\end{equation} +\\ +Where $\Delta t$ is the time difference between $t_{n}$ and $t_{n-1}$. The weak formuation becomes: + +\begin{equation} +\iint_\Omega %triple + H_{i}\phi-H_{n-1}\phi + \Delta t\;div \left( H_{n} \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right)\phi- \Delta t\;\dot{M}_s\phi + \Delta t\;\dot{M}_b\phi + -\Delta t\;div\left( \underline{\kappa}\; \overrightarrow{grad}H_{i}\right)\phi +d\Omega =0 +\end{equation} +\\ +One can integrate by part the artifficial damping term: + +\begin{multline} +\iint_\Omega %triple + H_{n}\phi + \Delta t\;div \left( H_{n} \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right)\phi ++\Delta t\;\left( \underline{\kappa}\; \overrightarrow{grad}H_{n}\right) .\overrightarrow{grad}\phi +d\Omega =\\ +\iint_\Omega %triple +H_{n-1}\phi+ \Delta t\;\dot{M}_s\phi - \Delta t\;\dot{M}_b\phi +d\Omega ++ +\int_{\partial\Omega} +\Delta t\; \left( \underline{\kappa}\; \overrightarrow{grad}H_{n}\right) .\overrightarrow{n}\phi dS +d\Omega +\end{multline} +\\ +Using the boudary condition, the last term vanishes: + +\begin{equation} +\iint_\Omega %triple + H_{n}\phi + \Delta t\;div \left( H_{n} \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right] \right)\phi ++\Delta t\left( \underline{\kappa}\; \overrightarrow{grad}H_{n}\right) .\overrightarrow{grad}\phi +d\Omega = +\iint_\Omega %triple +H_{n-1}\phi+ \Delta t\dot{M}_s\phi - \Delta t\dot{M}_b\phi +d\Omega +\end{equation} + + \section{Elementary stiffness matrix and load vector} +Following the same method as in the previous chapters, we obtain the stiffness matrix as follows: + +\begin{equation} +\begin{array}{l c l} +\displaystyle K_{i,j} &\displaystyle = & +\displaystyle \iint_{\Omega} +\phi_j \phi_i +\Delta t \;div \left( \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right]\phi_j \right)\phi_i ++\Delta t\left(\kappa_{xx}\dfrac{\partial \phi_j}{\partial x}\dfrac{\partial \phi_i}{\partial x} ++\kappa_{yy}\dfrac{\partial \phi_j}{\partial y}\dfrac{\partial \phi_i}{\partial y} \right) +d\Omega \\ +\\ +F_{i} &\displaystyle = & +\displaystyle \iint_\Omega %triple +H_{n-1}\phi_i+ \Delta t\dot{M}_s\phi_i - \Delta t\dot{M}_b\phi_i +d\Omega +\end{array} +\end{equation} +\\ +We now decompose these two matrices over the reference elements and use gaussian points for the integration : + +\begin{center} + $1 \leq i \leq 3$ and $1 \leq j \leq 3$ +\end{center} +\medskip +\begin{equation*} +\begin{array}{c l} +\displaystyle +K_{i,j} & \displaystyle = +\iint_{\hat{E}} + L_j L_i + +\Delta t \;div \left( \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right]L_j \right)L_i ++\Delta t\left(\kappa_{xx}\dfrac{\partial L_j}{\partial x}\dfrac{\partial L_i}{\partial x} ++\kappa_{yy}\dfrac{\partial L_j}{\partial y}\dfrac{\partial L_i}{\partial y} \right) + \vert J \vert d\hat{S}\\ +\\ +& \displaystyle \simeq +\sum_{g=1}^3 W_g\left( +\underbrace{L_j L_i}_{K1} + +\underbrace{\Delta t \;\left. div \left( \left[ \begin{array}{c} +\bar{u} \\ +\bar{v} +\end{array}\right]L_j \right) \right|_g L_i(g )}_{K2} ++\underbrace{\Delta t\left(\kappa_{xx}\left.\dfrac{\partial L_j}{\partial x}\right|_g\left.\dfrac{\partial L_i}{\partial x}\right|_g ++\kappa_{yy}\left.\dfrac{\partial L_j}{\partial y}\right|_g\left.\dfrac{\partial L_i}{\partial y}\right|_g \right)}_{K3} +\right) \vert J_g \vert \\ +\\ +\displaystyle +F_{i} & \displaystyle = +\iint_{\hat{E}} H_{n-1}L_i+ \Delta t\dot{M}_s L_i - \Delta t\dot{M}_b L_i +\vert J \vert d\Gamma \\ +\\ +& \displaystyle \simeq +\sum_{g=1}^3 \left( H_{n-1}L_i(g)+ \Delta t\dot{M}_s L_i(g) - \Delta t\dot{M}_b L_i(g)\right) \vert J_g \vert \delta(icesheet)\\ +\end{array} +\end{equation*} + +\subsection{First term $K1$} + +This elementary stiffness matrix is calculated with three matrices: $\displaystyle K1= \sum_{g=1}^3 [B]^T[D][B]$ as follows: +\begin{equation} +[B]=\left[\begin{array}{c c c} +B_1 & B_2 & B_3 +\end{array}\right]\quad \text{and} \quad D=W_g \vert J_g \vert +\end{equation} +with: +\begin{equation} +B_i= L_i(g ) +\end{equation} + +\subsection{Second term $K2$} + +The second elementary stiffness matrix is computed as follows: $\displaystyle K2= \sum_{g=1}^3 [B]^T[D][B]+[B]^T[D'][B']$ + +\begin{equation} +[B]=\left[\begin{array}{c c c} +B_1 & B_2 & B_3 +\end{array}\right] +\quad +[B']=\left[\begin{array}{c c c} +B_1' & B_2' & B_3' +\end{array}\right] +\end{equation} + +\begin{equation} +D=\Delta t \;W_g \vert J_g \vert +\left[\begin{array}{c c} +\left.\dfrac{ \partial \overline{u}}{\partial \varphi_x}\right|_g & 0\\ +0 & \left. \dfrac{\partial \overline{v}}{\partial \varphi_y}\right|_g +\end{array}\right] +\quad \text{and} \quad +D'=\Delta t \;W_g \vert J_g \vert +\left[\begin{array}{c c} +\overline{u}(g) & 0\\ +0 & \overline{v}(g) +\end{array}\right] +\end{equation} +\\ +with: +\begin{equation} +B_i= +\left[ \begin{array}{c} + L_i(g) \\ + L_i(g) +\end{array}\right] +\quad \text{and} \quad B_i'= +\left[ \begin{array}{c} +\left.\dfrac{ \partial L_i}{\partial \varphi_x}\right|_g \\ + \left.\dfrac{ \partial L_i}{\partial \varphi_y}\right|_g +\end{array}\right] +\end{equation} + +\subsection{Third term $K3$} + +The third elementary stiffness matrix is computed with three matrices: $\displaystyle K3= \sum_{g=1}^3 [B]^T[D][B]$ as follows: + +\begin{equation} +[B]=\left[\begin{array}{c c c } +B_1 & B_2 & B_3 +\end{array}\right]\quad \text{and} \quad D=\Delta t \;W_g \vert J_g \vert \underline{\kappa} +\end{equation} +with: +\begin{equation} +B_i= \left[\begin{array}{c } +\left.\dfrac{ \partial L_i}{\partial \varphi_x}\right|_g \\ + \left.\dfrac{ \partial L_i}{\partial \varphi_y}\right|_g +\end{array}\right] +\end{equation} + + \section{A comment on $\Delta t$} + +According to MacAyeal\cite{{Macayeal1997}} (p175), the implicit time-stepping scheme suggests that the solution of the prognostic (mass balance) equation should be stable for any time-step size. In practice, the time-step size should be chosen so that all imaginary passive-tracer particles initially released at the nodal points (except those starting at ice-front nodes) remain confined by one single element throughout the time span $\left[t,t+\Delta t \right]$. In other words, it is best to choose a $\Delta t$ small enough so that the distance traveled by one of these imaginary passive-tracer particles +will not exceed the mesh spacing. In circumstances where the velocity field of the ice shelf changes substantially through the time, it may be wise to +consider adaptively modifying $\Delta t$ during the simulation. The time-step size should follow the rule: + +\begin{equation} +\Delta t = \dfrac{\frac{\Delta L}{\sqrt{2}}}{2\max\left(v\right) } +\end{equation} +\\ +where $\Delta L$ is the nondimensional size of the finite-element mesh spacing (shortest distance between node points in the regular mesh). The idea of the above equation is that $\Delta t$ is just large enough so that the fastest moving passive-tracer particle will move half the distance along a diagonal trajectory across a typical triangular element. +\newpage +\chapter{Penalty Method} +\label{chappenalty} +\section{Introduction} + +Penalty method is a well known method which is often applied in finite element analysis of contact problems (See Wriggers \cite{Wriggers2002}). A penalty term, which can be interpreted as a spring with a very large stiffness, is added to the energy so that when a constraint is not fulfilled, the energy is much higher than it should be. Thanks to this penalized energy, a state that minimizes the energy is also a state that respects the constraints. Since finite element is a method that tries to minimize the energy of a system, the penalty forces the model to be properly constrained. In $ISSM$, penalties are used beween 2d and 3d meshes (horizontal velocities), bewteen 2d and 2d meshes (basal vertical velocity), bewteen 3d and 3d meshes (vertical velocity and temperature), and for melting. + +\section{Constraining velocities of two meshes} +The first exemple of penalty used in $ISSM$ is between the 2d and the 3d model (to compute the horizontal velocity $\left(u,v \right) $). In the same mesh, one wants to compute the velocity field with a 2d model on one part of the mesh, and with a 3d model on the other. We start from a 2d mesh, the grids on the boundary between the 2d model and the 3d model are splitted into 2 grids. Then, the part of the mesh assigned to compute the 3d model is extruded into several layers in order to compute have a 3d mesh. For example, one can have the following geometry: +\begin{figure}[H] +\begin{center} +\includegraphics[width=11.5cm]{meshpenalty.png} +\caption{Mesh of a system coupling a 2d and a 3d model} +\end{center} +\end{figure} +Although two different models are used, one wants to have a continuous velocity between the two part of the mesh. The penalties applied here are used to constrain the velocity of the 2d grids (in red) at the models interface to a value equal to the one of all the grids vertically extruded of the 3d mesh (blue). +\begin{figure}[H] +\begin{center} +\includegraphics[width=11.5cm]{penalties1.png} +\caption{Applied penalties at the models interface} +\end{center} +\end{figure} +\noindent +To ensure that, one adds penalties to the energy of the system: when the velocity of one of the 2d grid on the boundary is not the same as the corresponding 3d grids the energy must increase. Here, we have 10 red grids and for each red grid there are 10 blue grids (there are 10 layers). Therefore, there are 100 pair of grids and one wants the velocity of each grid to be the same as its pair. The penalized energy has the following expression (for the sake of simplicity, only one component is represented): + +\begin{equation} +E= +\left[ U\right] ^T \left[K \right] \left[U\right] +\left[U\right] ^T \left[F\right] ++ +\color{red}\sum^{red\;grids}_{n=1} +\color{black}\left( +\color{blue}\sum^{layers}_{l=1} +\color{black}\kappa +\left(\color{red}u_n\color{black}-\color{blue}u_{nl}\color{black} \right)^2 +\right) +\end{equation} +\\ +Where $K$ and $F$ are the stiffness matrix and the load vetor of the system, $U$ is the velocity of the grids, and $\kappa$ is the penalty term: a very large number compared to $K_{ij}$ so that the energy of the system explode when one $\color{red}u_n$ is two far from its corresponding $\color{blue}u_{nl}$ (ie. when the velocities of the 2 grids belonging to the same pair of grids are not equal). From now on, we will explain the penalty method only for one pair of grids. The general case can be easily found by reproducing the following pattern for every pair of grids. The penalized energy is: + +\begin{equation} +E= +\left[ U\right] ^T \left[K \right] \left[U\right] +\left[U\right] ^T \left[F\right] ++ +\kappa +\left(\color{red}u_{red}\color{black}-\color{blue}u_{blue}\color{black} \right)^2 +\end{equation} +\\ +We can transform this expression as follows: + +\begin{equation} +E= +\left[ +\begin{array}{c} %U +\vdots \\ +u_j\\ +\vdots\\ +\end{array} +\right]^T +\left[ +\begin{array}{c c c} %K +& \vdots & \\ +\cdots & K_{ij} & \cdots\\ +& \vdots & \\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +u_j\\ +\vdots\\ +\end{array} +\right] ++\left[ +\begin{array}{c} %U +\vdots \\ +u_j\\ +\vdots\\ +\end{array} +\right]^T +\left[ +\begin{array}{c} %U +\vdots \\ +F_j\\ +\vdots\\ +\end{array} +\right] ++ +\left[ +\begin{array}{c} %U +\color{red}u_{red}\\ +\color{blue}u_{blue}\\ +\end{array} +\right]^T +\left[ +\begin{array}{c c} %K +\kappa & -\kappa \\ +-\kappa & \kappa\\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\color{red}u_{red}\\ +\color{blue}u_{blue}\\ +\end{array} +\right] +\end{equation} +\\ +Finally one can concatenate the stiffness matrix with the penalty matrix: + +\begin{equation} +E= +\left[ +\begin{array}{c} %U +\vdots \\ +\color{red}u_{red}\\ +\vdots\\ +\color{blue}u_{blue}\\ +\vdots +\end{array} +\right]^T +\left[ +\begin{array}{c c c c c} %K +& \vdots & \vdots & \vdots & \\ +\cdots & K_{rr}+\kappa & \cdots & K_{rb}-\kappa & \cdots\\ +& \vdots & \vdots & \vdots& \\ +\cdots & K_{br}-\kappa & \cdots & K_{bb}+\kappa & \cdots\\ +& \vdots & \vdots & \vdots & +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +\color{red}u_{red}\\ +\vdots\\ +\color{blue}u_{blue}\\ +\vdots +\end{array} +\right]+\left[ +\begin{array}{c} %U +\vdots \\ +u_j\\ +\vdots\\ +\end{array} +\right]^T +\left[ +\begin{array}{c} %U +\vdots \\ +F_j\\ +\vdots\\ +\end{array} +\right] +\end{equation} +\\ +Given that energy, the linear system to solve is: + +\begin{equation} +\begin{array}{|c c c|} +\hline +&&\\ +&\left[ +\begin{array}{c c c c c} %K +& \vdots & \vdots & \vdots & \\ +\cdots & K_{rr}+\kappa & \cdots & K_{rb}-\kappa & \cdots\\ +& \vdots & \vdots & \vdots& \\ +\cdots & K_{br}-\kappa & \cdots & K_{bb}+\kappa & \cdots\\ +& \vdots & \vdots & \vdots & +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +\color{red}u_{red}\\ +\vdots\\ +\color{blue}u_{blue}\\ +\vdots +\end{array} +\right] += +\left[ +\begin{array}{c} %U +\vdots \\ +F_j\\ +\vdots\\ +\end{array} +\right]&\\ +&&\\ +\hline +\end{array} +\end{equation} +\\ +Since $\kappa$ is much larger that $K_{ij}$, the first equation that links $\color{red}u_{red}$ to $\color{blue}u_{blue}$: + +\begin{equation} +\sum_{i=1}^{n}K_{ir}u_i +\kappa\left( \color{red}u_{red}\color{black}-\color{blue}u_{blue}\color{black}\right)=F_r +\end{equation} +\\ +To the zero order: + +\begin{equation} +\kappa\left( \color{red}u_{red}\color{black}-\color{blue}u_{blue} \color{black}\right)=0 +\hspace{1cm} \Longleftrightarrow \hspace{1cm} +\color{red}u_{red}\color{black} =\color{blue}u_{blue}\color{black} +\end{equation} +\\ +We see that the penalized stiffness matrix ensure that the velocities of the grids pair is the same. The exact same process is used between two 2d meshes (basal vertical velocity) and two 3d meshes (temperature or vertical velocity). The crucial step is to build the pairs of grids and then add penalties on the corresponding rows and clumns of the stiffness matrix.\\ +\\ +Here are the results for a square iceshelf. The upperview does not show any discontinuity in the velocity field: +\begin{figure}[H] +\begin{center} +\includegraphics[width=10cm]{penalized_vel_2.png} +\caption{coupling between a 2d and a 3d model, upper view} +\end{center} +\end{figure} +\begin{figure}[H] +\begin{center} +\includegraphics[width=10cm]{penalized_vel_3.png} +\caption{coupling between a 2d and a 3d model, 3d view} +\end{center} +\end{figure} + +\section{Stokes model} +\label{stokespenaltiessection} +We have seen in section \ref{stokessection} that the boundary condition on ice/till interface for the vertical velocity was: +\begin{equation} +w=-\frac{\partial b}{\partial x}u-\frac{\partial b}{\partial y}v +\end{equation} +\\ +In order to apply this boundary condition, we use a penalty to connect the three components of the velocity.\\ +The equation of the penalty we have to add in the elementary matrix is: + +\begin{equation} +\kappa \left( w+\frac{\partial b}{\partial x}u+\frac{\partial b}{\partial y}v\right)=0 +\end{equation} +\\ +If we note $K$ the elementary stiffness matrix, and $F$ the elementary load vector , the system to solve with these penalties is: + +\begin{equation} +\left[ +\begin{array}{c c c c c} %K +& \vdots & \vdots & \vdots & \\ +\cdots & K_{3i,3j-2}+\kappa\; n_x & K_{3i,3j-1}+\kappa\; n_y & K_{3i,3j}+\kappa & \cdots\\ +& \vdots & \vdots & \vdots & +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +u_j\\ +v_j\\ +w_j\\ +\vdots\\ +\end{array} +\right] += +\left[ +\begin{array}{c} %U +\vdots \\ +F_j\\ +\vdots +\end{array} +\right]\\ +\end{equation} +\newpage +\section{Thermal model} +We have seen in section \ref{meltingsection} that the equation on the Ice/Till interface was: + +\begin{equation} +\label{basalthermal} +\left\{ \begin{array}{l} +\displaystyle -k \left. \dfrac{\partial T}{\partial z}\right| _b =G + \overrightarrow{\tau}_b . \overrightarrow{u}_b - \rho L\dot{M}_b \\ +\\ +\displaystyle \dot{M}_b\left( T-T_{pmp}\right) =0 \\ +\\ +\displaystyle T-T_{pmp} \leq 0 \\ +\\ +\displaystyle \dot{M}_b \geq 0 \\ + \end{array} \right. +\end{equation} +\\ +The third equation imposes the temperature to be below the pressure melting point $T_{pmp}$. One can use penalty to constrain the temperature. We will see that one can then use these penalties to deduce the melting rate. + +\subsection{Constraining temperature} +The temperature of each grid must stay below the pressure melting point $T_{pmp}$. In the first step, it is assumed that the computed temperature is everywhere below $T_{pmp}$. The computed temperature is then compared to the pressure melting point. When a grid goes above $T_{pmp}$, one adds penalties in the stiffness matrix and in the load vector to keep it at the pressure melting point as follows: + +\begin{equation} +\begin{array}{|c c c|} +\hline +&&\\ +& +\left[ +\begin{array}{c c c} %K +& \vdots & \\ +\cdots & K_{ij}+\kappa & \cdots\\ +& \vdots & \\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +T_j\\ +\vdots\\ +\end{array} +\right] += +\left[ +\begin{array}{c} %U +\vdots \\ +F_j+\kappa T_{pmp}\\ +\vdots\\ +\end{array} +\right] &\\ +&&\\ +\hline +\end{array} +\end{equation} +\\ +So that $T_j$ is constrained to $T_{pmp}$. One does that for all the grids above the pressure melting point. Then the temperature is computed again and compared to $T_{pmp}$. The grids above this temperature are the penalized, whereas those which were already penalized and present a temperature now below the pressure melting point are released. After several iterations, one finaly gets the temperature field. +\begin{figure}[H] +\begin{center} +\includegraphics[width=11cm]{thermal_loop.png} +\caption{Thermal Algotithm of $ISSM$} +\end{center} +\end{figure} + +\subsection{Basal melting} +using the previous algorithm, one can solve the third equation of the system (\ref{basalthermal}). But the use of penalties allows also to compute melting. One a penalty is applied ($T$ reaches the pressure melting point), the system to solve is: + +\begin{equation} +\left[ +\begin{array}{c c c} %K +& \vdots & \\ +\cdots & K_{ij} & \cdots\\ +& \vdots & \\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +T_j\\ +\vdots\\ +\end{array} +\right] += +\left[ +\begin{array}{c} %U +\vdots \\ +F_j+\kappa \left( T_{pmp}-T_j\right) \\ +\vdots\\ +\end{array} +\right] +\end{equation} +\\ +We saw that the melting was not computed in the load vector. But one can use the previous load vector to deduce melting: the total load veclor (that includes basal melting) should have had the following expression: + +\begin{equation} +\begin{array}{l c l} +\displaystyle +F_{j}^{tot} &=&\displaystyle +\iiint_\Omega +\left( +-\dfrac{\partial T}{\partial t} + \dfrac{\Phi}{ \rho c } +\right) \theta_i d\Omega ++ +\iint_{\Gamma_b } +\dfrac{1}{ \rho c } \left(G + \overrightarrow{\tau}_b . \overrightarrow{u}_b + \rho L\dot{M}_b\right) \theta_j +dS\\ +\\ +&=&\displaystyle F_{j} + +\dfrac{1}{ \rho c }\iint_{\Gamma_b } +\rho L\dot{M}_b \theta_j +dS\\ +\end{array} +\end{equation} +\\ +That gives a simple relation between the penalized load and basal melting: + +\begin{equation} +\kappa \left( T_{pmp}-T_j\right)= +\dfrac{L}{ c }\iint_{\Gamma_b } \dot{M}_b \theta_jdS +\end{equation} +\\ +We can use a 2d mesh (we are dealing with the glacier base only), to deduce $\dot{M}_{b_j}$: + +\begin{equation} +\begin{array}{|c c c|} +\hline +&&\\ +& +\left[ +\begin{array}{c c c} %K +& \vdots & \\ +\cdots & K'_{ij} & \cdots\\ +& \vdots & \\ +\end{array} +\right] +\left[ +\begin{array}{c} %U +\vdots \\ +\dot{M}_{b_j}\\ +\vdots\\ +\end{array} +\right] += +\left[ +\begin{array}{c} %U +\vdots \\ +F'_j\\ +\vdots\\ +\end{array} +\right] +&\\ +&&\\ +\hline +\end{array} +\end{equation} +\\ +with: + +\begin{equation} +\begin{array}{|r c l|} +\hline +&&\\ +K'_{ij} & = & \displaystyle +\dfrac{L}{c}\iint_{\Gamma_b } +\theta_i\theta_j +dS\\ +&&\\ +F'_{j} & = & \displaystyle +\kappa \left( T_{pmp}-T_j\right)\\ +&&\\ +\hline +\end{array} +\end{equation} +\\ +The grids where no penalty is applied (ie. the temperature is below the pressure melting point) are constrained to 0. Thanks to that we solved all the equations of the system (\ref{basalthermal}). + +\newpage +\appendix +\chapter{Reference Elements} +In finite element models, rather than calculating the integrals for each element, one uses a \emph{Reference Element} $\hat{E}$, and a transformation $\varphi$ that transforms the reference element to the element $E$. + + \section{One dimension, Segment} +\label{RE1D} +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{segment.png} +\caption{Transformation from the reference segment, to the current segment of the mesh} +\end{center} +\end{figure} + +For any function $f(x)$, we have the following equation: + +\begin{equation} +\int_E f(x)dx = \int_{\hat{E}} {f}(\varphi(r)) \vert \varphi' \vert dr +\end{equation} +\\ +For the reference element $\hat{E}$, the nodal functions are: + +\begin{equation} +\begin{array}{l} +\displaystyle L_1(r)= -\frac{1}{2}r + \frac{1}{2}\\ +\\ +\displaystyle L_2(r)= \frac{1}{2}r + \frac{1}{2}\\ +\end{array} +\end{equation} +\\ +One can use these nodal functions to calculate the function $\varphi$: + +\begin{equation} +\varphi(r)= x_1 L_1(r) + x_2 L_2(r)\\ +\end{equation} +So, +\begin{equation} +\varphi(r)= \frac{1}{2}\left( - x_1 + x_2\right) r +\frac{1}{2}\left( x_1+x_2\right)\\ +\end{equation} +\\ +The derivative of $ \varphi$ is : +\begin{equation} +\varphi'(r)=\frac{1}{2} \left( -x_1 + x_2 \right)\\ +\end{equation} + + + +\newpage + \section{Two dimensions, Triangle} +\label{RE2D} +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{triaelem.png} +\caption{Transformation from the reference triangle, to the current element of the mesh} +\end{center} +\end{figure} +For any function $f(x,y)$, we have the following equation: + +\begin{equation} +\iint_E f(x,y)dS = \iint_{\hat{E}} \hat{f}(r,s) \vert J \vert dS +\end{equation} +\\ +Where $J$ is the Jacobian determinant of the $\varphi$ function. +For the reference element $\hat{E}$, the nodal functions are: + +\begin{equation} +\begin{array}{l} +\displaystyle L_1(r,s)= -\frac{1}{2}r -\frac{\sqrt{3}}{6}s + \frac{1}{3}\\ +\\ +\displaystyle L_2(r,s)= \frac{1}{2}r -\frac{\sqrt{3}}{6}s + \frac{1}{3}\\ +\\ +\displaystyle L_3(r,s)= \frac{\sqrt{3}}{3}s + \frac{1}{3}\\ +\end{array} +\end{equation} +\\ +One can use these nodal functions to calculate the function $\varphi$: + +\begin{equation} +\varphi(r,s)= +\left\lbrace +\begin{array}{l l} +\displaystyle x= & x_1 L_1(r,s) + x_2 L_2(r,s) + x_3 L_3(r,s)\\ +\\ +\displaystyle y= & y_1 L_1(r,s) + y_2 L_2(r,s) + y_3 L_3(r,s) \\ +\end{array} +\right. +\end{equation} +So, +\begin{equation} +\varphi(r,s)= +\left\lbrace +\begin{array}{l} +\displaystyle +x = \left( - \frac{1}{2}x_1 + \frac{1}{2} x_2\right) r ++ \left(-\frac{\sqrt{3}}{6}x_1 -\frac{\sqrt{3}}{6}x_2+\frac{\sqrt{3}}{3}x_3\right) s ++\frac{1}{6}\left( 2x_1+2x_2+x_3 \right)\\ +\\ +\displaystyle +y=\left( - \frac{1}{2}y_1 + \frac{1}{2} y_2\right) r ++ \left(-\frac{\sqrt{3}}{6}y_1 -\frac{\sqrt{3}}{6}y_2+\frac{\sqrt{3}}{3}y_3\right) s ++\frac{1}{6}\left( 2y_1+2y_2+y_3 \right) + \\ +\end{array} +\right. +\end{equation} +\\ +The Jacobian of the $\varphi$ function is now easily computable: + +\begin{equation} +J= +\left[ +\begin{array}{c c} +\displaystyle +\frac{\partial \varphi_x }{\partial r} & \displaystyle \frac{\partial \varphi_x }{\partial s} \\ +\\ +\displaystyle +\frac{\partial \varphi_y }{\partial r} & \displaystyle \frac{\partial \varphi_y }{\partial s} \\ +\end{array} +\right] += +\left[ +\begin{array}{c c} +\displaystyle +\frac{1}{2}\left( x_2-x_1 \right) & \displaystyle \frac{\sqrt{3}}{6}\left(2x_3-x_1-x_2\right) \\ +\\ +\displaystyle +\frac{1}{2}\left( y_2- y_1\right)& \displaystyle \frac{\sqrt{3}}{6}\left(2y_3-y_1-y_2\right) + \\ +\end{array} +\right] +\end{equation} + + + +\newpage + \section{Two dimensions, Squares} +\label{RE2D2} +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{quadelem.png} +\caption{Transformation from the reference quadrangle, to the current element of the mesh} +\end{center} +\end{figure} +For any function $f(x,y)$, we have the following equation: + +\begin{equation} +\iint_E f(x,z)dS = \iint_{\hat{E}} \hat{f}(r,s) \vert J \vert dS +\end{equation} +\\ +Where $J$ is the Jacobian determinant of the $\varphi$ function. +For the reference element $\hat{E}$, the nodal functions are: + +\begin{equation} +\begin{array}{l} +\displaystyle L_1(r,s)= -\frac{1}{4} \left(r+1\right)\left(s-1\right)\\ +\\ +\displaystyle L_2(r,s)= \frac{1}{4} \left(r-1\right)\left(s-1\right)\\ +\\ +\displaystyle L_3(r,s)= - \frac{1}{4} \left(r-1\right)\left(s+1\right)\\ +\\ +\displaystyle L_4(r,s)= \frac{1}{4} \left(r+1\right)\left(s+1\right)\\ +\end{array} +\end{equation} +\\ +One can use these nodal functions to calculate the function $\varphi$: + +\begin{equation} +\varphi(r,s)= +\left\lbrace +\begin{array}{l l} +\displaystyle x= & x_1 L_1(r,s) + x_2 L_2(r,s) + x_3 L_3(r,s) + x_4 L_4(r,s)\\ +\\ +\displaystyle z= & z_1 L_1(r,s) + z_2 L_2(r,s) + z_3 L_3(r,s) + z_4 L_4(r,s)\\ +\end{array} +\right. +\end{equation} +So, +\begin{equation} +\varphi(r,s)= +\left\lbrace +\begin{array}{r c l} +\displaystyle +x & = &\displaystyle \frac{1}{4}\left( -x_1 + x_2 - x_3 + x_4\right) rs ++ \frac{1}{4}\left(x_1 -x_2-x_3 +x_4\right) r\\ +\\ +&& +\displaystyle + \frac{1}{4}\left(-x_1 -x_2+x_3+ x_4\right) s ++ \frac{1}{4}\left(x_1 +x_2+x_3 + x_4\right) +\\ +\displaystyle +\\ +z & = &\displaystyle \frac{1}{4}\left( -z_1 + z_2 - z_3 + z_4\right) rs ++ \frac{1}{4}\left(z_1 -z_2-z_3 +z_4\right) r\\ +\\ +&& +\displaystyle + \frac{1}{4}\left(-z_1 -z_2+z_3+ z_4\right) s ++ \frac{1}{4}\left(z_1 +z_2+z_3 + z_4\right) + \\ +\end{array} +\right. +\end{equation} +\\ +The Jacobian of the $\varphi$ function is now easily computable: + +\begin{equation} +J= +\left[ +\begin{array}{c c} +\displaystyle +\frac{\partial \varphi_x }{\partial r} & \displaystyle \frac{\partial \varphi_x }{\partial s} \\ +\\ +\displaystyle +\frac{\partial \varphi_y }{\partial r} & \displaystyle \frac{\partial \varphi_y }{\partial s} \\ +\end{array} +\right] +\end{equation} +\\ +\begin{equation} +\begin{array}{c} +\displaystyle J_{11}= +\frac{1}{4} \left(- x_1+x_2 - x_3 + x_4 \right) s + \frac{1}{4}\left( x_1 - x_2 - x_3 +x_4\right)\\ +\\ +\displaystyle J_{12}= \frac{1}{4}\left( -x_1 + x_2 - x_3 + x_4 \right) r + \frac{1}{4}\left( - x_1 - x_2 + x_3 + x_4 \right) \\ +\\ +\displaystyle J_{12}= +\frac{1}{4} \left(- z_1+z_2 - z_3 + z_4 \right) s + \frac{1}{4}\left( z_1 - z_2 - z_3 +z_4\right)\\ +\\ +\displaystyle J_{22}= \frac{1}{4}\left( -z_1 + z_2 - z_3 + z_4 \right) r + \frac{1}{4}\left( - z_1 - z_2 + z_3 + z_4 \right) \\ +\\ +\end{array} +\end{equation} + +\newpage + \section{Three dimensions, tetrahedron} +\label{RE3D1} +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{tetraelem.png} +\caption{Transformation from the reference element, to the current pentahedron of the mesh} +\end{center} +\end{figure} +For any function $f(x,y,z)$, the transformation verifies: + +\begin{equation} +\iiint_E f(x,y,z)dV = \iiint_{\hat{E}} \hat{f}(r,s,\zeta) \vert J \vert d\hat{V} +\end{equation} +\\ +Where $J$ is the Jacobian determinant of the $\varphi$ function. +For the reference element $\hat{E}$, the nodal functions are: + +\begin{equation} +\begin{array}{l} +\displaystyle L_1(r,s,\zeta)= \dfrac{1}{2}\left( 1-r-\dfrac{1}{\sqrt{3}}s-\dfrac{1}{\sqrt{6}}\zeta\right)\\ +\\ +\displaystyle L_2(r,s,\zeta)= \dfrac{1}{2}\left( 1+r-\dfrac{1}{\sqrt{3}}s-\dfrac{1}{\sqrt{6}}\zeta\right)\\ +\\ +\displaystyle L_3(r,s,\zeta)= \dfrac{1}{\sqrt{3}}\left( s-\dfrac{1}{\sqrt{8}}\zeta\right)\\ +\\ +\displaystyle L_4(r,s,\zeta)= \sqrt{\dfrac{3}{8}}\zeta\\ +\end{array} +\end{equation} +\\ +One can use these nodal functions to calculate the function $\varphi$: + +\begin{equation} +\varphi(r,s)= +\left\lbrace +\begin{array}{l} +\displaystyle x=\sum_{i=1}^4 x_i L_i(r,s,\zeta)\\ +\\ +\displaystyle y=\sum_{i=1}^4 y_i L_i(r,s,\zeta)\\ +\\ +\displaystyle z=\sum_{i=1}^4 z_i L_i(r,s,\zeta)\\ +\end{array} +\right. +\end{equation} +For example, the first component of $\varphi(r,s,\zeta)$ is: +\begin{equation*} +\varphi_x(r,s,t)= +\frac{1}{2}\left( x_1+x_2\right) ++ \frac{1}{2}\left( -x_1+x_2\right) r ++ \frac{1}{2\sqrt{3}} \left( -x_1-x_2+2 x_3\right)s ++ \frac{1}{2\sqrt{6}}\left( -x_1-x_2-x_3+x_4\right)\zeta +\end{equation*} +\\ +The 2 other components have exactly the same equation, except the the $x_i$ must be replaced by in turn $y_i$ and $z_i$. +The Jacobian of the $\varphi$ function is now easily computable: + +\begin{equation} +J= +\left[ +\begin{array}{c c c} +\displaystyle +\frac{\partial \varphi_x }{\partial r} & \displaystyle \frac{\partial \varphi_x }{\partial s} & \displaystyle \frac{\partial \varphi_x }{\partial \zeta} \\ +\\ +\displaystyle +\frac{\partial \varphi_y }{\partial r} & \displaystyle \frac{\partial \varphi_y }{\partial s} & \displaystyle \frac{\partial \varphi_y }{\partial \zeta} \\ +\\ +\displaystyle +\frac{\partial \varphi_z }{\partial r} & \displaystyle \frac{\partial \varphi_z }{\partial s} & \displaystyle \frac{\partial \varphi_z }{\partial \zeta} \\ +\end{array} +\right] +\end{equation} +\\ +with: +\begin{equation*} +\begin{array}{l l l} +\displaystyle +J_{11}= + \frac{1}{2}\left( -x_1+x_2\right) & +J_{21}= \displaystyle +\frac{1}{2}\left( -y_1+y_2\right) & +J_{31}= \displaystyle +\frac{1}{2}\left( -z_1+z_2\right) \\ +\\ +J_{12}= \displaystyle +\frac{1}{2\sqrt{3}} \left( -x_1-x_2+2 x_3\right)& +J_{22}= \displaystyle +\frac{1}{2\sqrt{3}} \left( -y_1-y_2+2 y_3\right)& +J_{32}= \displaystyle +\frac{1}{2\sqrt{3}} \left( -z_1-z_2+2 z_3\right)\\ +\\ +J_{31}= \displaystyle +\frac{1}{2\sqrt{6}}\left( -x_1-x_2-x_3+x_4\right))& +J_{32}= \displaystyle +\frac{1}{2\sqrt{6}}\left( -x_1-y_2-x_3+y_4\right)& +J_{33}= \displaystyle +\frac{1}{2\sqrt{6}}\left( -z_1-z_2-z_3+z_4\right)\\ +\end{array} +\end{equation*} +\newpage + + + + +\newpage + \section{Three dimensions, pentahedron} +\label{RE3D} +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{pentaelem.png} +\caption{Transformation from the reference element, to the current pentahedron of the mesh} +\end{center} +\end{figure} +For any function $f(x,y,z)$, the transformation verifies: + +\begin{equation} +\iiint_E f(x,y,z)dV = \iiint_{\hat{E}} \hat{f}(r,s,\zeta) \vert J \vert d\hat{V} +\end{equation} +\\ +Where $J$ is the Jacobian determinant of the $\varphi$ function. +For the reference element $\hat{E}$, the nodal functions are: + +\begin{equation} +\begin{array}{l} +\displaystyle L_1(r,s,\zeta)= \left( -\frac{1}{2}r -\frac{\sqrt{3}}{6}s + \frac{1}{3}\right) \frac{1-\zeta}{2}\\ +\\ +\displaystyle L_2(r,s,\zeta)= \left(\frac{1}{2}r -\frac{\sqrt{3}}{6}s + \frac{1}{3}\right) \frac{1-\zeta}{2}\\ +\\ +\displaystyle L_3(r,s,\zeta)=\left( \frac{\sqrt{3}}{3}s + \frac{1}{3}\right) \frac{1-\zeta}{2}\\ +\\ +\displaystyle L_4(r,s,\zeta)= \left( -\frac{1}{2}r -\frac{\sqrt{3}}{6}s + \frac{1}{3}\right) \frac{\zeta+1}{2} \\ +\\ +\displaystyle L_5(r,s,\zeta)= \left(\frac{1}{2}r -\frac{\sqrt{3}}{6}s + \frac{1}{3}\right) \frac{\zeta+1}{2}\\ +\\ +\displaystyle L_6(r,s,\zeta)=\left( \frac{\sqrt{3}}{3}s + \frac{1}{3}\right) \frac{\zeta+1}{2}\\ +\end{array} +\end{equation} +\\ +One can use these nodal functions to calculate the function $\varphi$: + +\begin{equation} +\varphi(r,s)= +\left\lbrace +\begin{array}{l} +\displaystyle x=\sum_{i=1}^6 x_i L_i(r,s,\zeta)\\ +\\ +\displaystyle y=\sum_{i=1}^6 y_i L_i(r,s,\zeta)\\ +\\ +\displaystyle z=\sum_{i=1}^6 z_i L_i(r,s,\zeta)\\ +\end{array} +\right. +\end{equation} +For example, the first component of $\varphi(r,s,\zeta)$ is: +\begin{multline*} +\varphi_x(r,s,t)= +\frac{1}{6}\left( x_1+x_2+x_3+x_4+x_5+x_6 \right) ++ \frac{1}{4}\left( -x_1+x_2-x_4+x_5 \right) r \\ ++ \frac{\sqrt{3}}{12} \left( -x_1-x_2+2 x_3- x_4- x_5+ 2 x_6 \right)s ++ \frac{1}{6}\left( -x_1-x_2-x_3+x_4+x_5+x_6 \right)\zeta\\ ++ \frac{1}{4}\left( x_1-x_2-x_4+x_5 \right) r\zeta ++ \frac{\sqrt{3}}{12} \left( x_1+x_2- 2 x_3- x_4- x_5+2 x_6 \right)s\zeta\\ +\end{multline*} +\\ +The 2 other components have exactly the same equation, except the the $x_i$ must be replaced by in turn $y_i$ and $z_i$. +The Jacobian of the $\varphi$ function is now easily computable: + +\begin{equation} +J= +\left[ +\begin{array}{c c c} +\displaystyle +\frac{\partial \varphi_x }{\partial r} & \displaystyle \frac{\partial \varphi_x }{\partial s} & \displaystyle \frac{\partial \varphi_x }{\partial \zeta} \\ +\\ +\displaystyle +\frac{\partial \varphi_y }{\partial r} & \displaystyle \frac{\partial \varphi_y }{\partial s} & \displaystyle \frac{\partial \varphi_y }{\partial \zeta} \\ +\\ +\displaystyle +\frac{\partial \varphi_z }{\partial r} & \displaystyle \frac{\partial \varphi_z }{\partial s} & \displaystyle \frac{\partial \varphi_z }{\partial \zeta} \\ +\end{array} +\right] +\end{equation} +\\ +with: +\begin{equation*} +\begin{array}{c l} +\displaystyle +J_{11}= & \displaystyle + \frac{1}{4}\left( -x_1+x_2-x_4+x_5 \right)+ \frac{1}{4}\left( x_1-x_2-x_4+x_5 \right) \zeta \\ +\\ +J_{21}= & \displaystyle + \frac{1}{4}\left( -y_1+y_2-y_4+y_5 \right)+ \frac{1}{4}\left( y_1-y_2-y_4+y_5 \right) \zeta \\ +\\ +J_{31}= & \displaystyle + \frac{1}{4}\left( -z_1+z_2-z_4+z_5 \right)+ \frac{1}{4}\left( z_1-z_2-z_4+z_5 \right) \zeta \\ +\end{array} +\end{equation*} +\begin{equation} +\begin{array}{c l} +J_{12}= & \displaystyle +\frac{\sqrt{3}}{12} \left( -x_1-x_2+2 x_3- x_4- x_5+ 2 x_6 \right)+ \frac{\sqrt{3}}{12} \left( x_1+x_2- 2 x_3- x_4- x_5+2 x_6 \right)\zeta\\ +\\ +J_{22}= & \displaystyle +\frac{\sqrt{3}}{12} \left( -y_1-y_2+2 y_3- y_4- y_5+ 2 y_6 \right)+ \frac{\sqrt{3}}{12} \left( y_1+y_2- 2 y_3- y_4- y_5+2 y_6 \right)\zeta\\ +\\ +J_{32}= & \displaystyle +\frac{\sqrt{3}}{12} \left( -z_1-z_2+2 z_3- z_4- z_5+ 2 z_6 \right)+ \frac{\sqrt{3}}{12} \left( z_1+z_2 - 2 z_3- z_4- z_5+2 z_6 \right)\zeta\\ +\end{array} +\end{equation} +\begin{equation*} +\begin{array}{c l} +J_{13}= & \displaystyle +\frac{1}{4}\left( x_1-x_2-x_4+x_5 \right) r ++ \frac{\sqrt{3}}{12} \left( x_1+x_2- 2 x_3- x_4- x_5+2 x_6 \right)s ++ \frac{1}{6}\left( -x_1-x_2-x_3+x_4+x_5+x_6 \right)\\ +\\ +J_{32}= & \displaystyle +\frac{1}{4}\left( y_1-y_2-y_4+y_5 \right) r ++ \frac{\sqrt{3}}{12} \left( y_1+y_2- 2 y_3- y_4- y_5+2 y_6 \right)s ++ \frac{1}{6}\left( -y_1-y_2-y_3+y_4+y_5+y_6 \right)\\ +\\ +J_{33}= & \displaystyle +\frac{1}{4}\left( z_1-z_2-z_4+z_5 \right) r ++ \frac{\sqrt{3}}{12} \left( z_1+z_2- 2 z_3- z_4- z_5+2 z_6 \right)s ++ \frac{1}{6}\left( -z_1-z_2-z_3+z_4+z_5+z_6 \right)\\ +\\ +\end{array} +\end{equation*} +\newpage + \section{MINI element} +\label{MINI} +\begin{figure}[H] +\begin{center} +\includegraphics[width=8cm]{MINI.png} +\caption{MINI element} +\end{center} +\end{figure} +The MINI element is an extruded triangular element with continuous velocity and pressure approximations. Introduced by Arnold et al. (1984), the MINI element +satisfies the LLB conditions (Ladyzhenskaya-Babuska-Brezzi, See Nowicki \cite{Nowicki2007} for more details), and therefore results in stable velocities and pressure.\\ +\\ +The MINI element is based on a extruded straight-sided triangular element (called P1-P1), which has a node at each vertex. In the MINI element, the pressure and velocity are approximated via + +\begin{equation} +\begin{array}{r c l} +P\left(x,y,z \right) & = & \displaystyle \sum_{i=1}^6 P_j \phi_j\left(x,y,z \right) \\ +\\ +u\left(x,y,z \right) & = & \displaystyle \sum_{i=1}^6 u_j \phi_j\left(x,y,z \right) +u_b \phi_b\left(x,y,z \right) \\ +\\ +v\left(x,y,z \right) & = & \displaystyle \sum_{i=1}^6 v_j \phi_j\left(x,y,z \right) +v_b \phi_b\left(x,y,z \right) \\ +\\ +w\left(x,y,z \right) & = & \displaystyle \sum_{i=1}^6 w_j \phi_j\left(x,y,z \right) +w_b \phi_b\left(x,y,z \right) +\end{array} +\end{equation} +\\ +The $\phi_j$ functions has the same shape as in the pentahedron (\ref{RE3D}). Therefore, the transformation $\varphi$ that transforms the reference element to the element $E$ has exactly the same shape as inthe previous section (\ref{RE3D}).\\ +\\ +The nodal function $ \phi_b\left(x,y,z \right)$ is called bubble function. According to Nowicki \cite{Nowicki2007} and Guillem \cite{Guillen2005}, the bubble shape function in a reference element $ L_b\left(x,y,z \right)$ is: + +\begin{equation} +L_b\left(x,y,z \right)=27\left( -\frac{1}{2}r -\frac{\sqrt{3}}{6}s + \frac{1}{3}\right)\left(\frac{1}{2}r -\frac{\sqrt{3}}{6}s + \frac{1}{3}\right)\left( \frac{\sqrt{3}}{3}s + \frac{1}{3}\right)\left( \zeta+1\right)\left(1- \zeta\right) +\end{equation} +\\ +$ \phi_b\left(x,y,z \right)$ is equal to 1 at the center of the element (due to the factor $27$), and vanishes at the element boundary. + +\newpage + + + + +\chapter{Parameters and constants} + +\begin{center} +\begin{longtable}{l l l l} +\hline +\hline +\multicolumn{1}{c}{Parameter} & \multicolumn{1}{c}{Symbol} & \multicolumn{1}{c}{Unit} & \multicolumn{1}{c}{Value}\\ +\hline +\\ +Glacier's lower surface z-coordinate & $b$ & m &\\ +Glen's flow law viscosity parameter & $B$ & MPa a\textsuperscript{1/n}\\ +Ice specific heat capacity & $c$ & J kg\textsuperscript{-1} K\textsuperscript{-1} & 2093\\ +Mixed layer specific heat & $c_{pM}$ & J kg\textsuperscript{-1} K\textsuperscript{-1} & 3974\\ +Acceleration due to gravity & $g$ & m s\textsuperscript{-1} & 9.81\\ +Geothermal heat flux & $G$ & W m\textsuperscript{-2} & $\sim$0.05\\ +Glacier's Height &$H$ & m &\\ +Ice thermal conductivity & $k$ & W m\textsuperscript{-1} K\textsuperscript{-1} & 2.4\\ +Basal drag parameter & $K$ & Pa\textsuperscript{$\frac{1-r}{2}$} s\textsuperscript{$\frac{s}{2}$} m\textsuperscript{$-\frac{s}{2}$} &\\ +Ice specific latent heat of fusion & $L$ & J kg\textsuperscript{-1} & 3.34 $\times$ 10\textsuperscript{5}\\ +Mass production term ($m/a$ ice equivalent) & $\dot{M}$ & m a\textsuperscript{-1} &\\ +Melting ($m/a$ ice equivalent) & $\dot{M}_b$ & m a\textsuperscript{-1} &\\ +Accumulation ($m/a$ ice equivalent) & $\dot{M}_s$ & m a\textsuperscript{-1} &\\ +Glen's flow law exponent & $n$ & dimensionless\\ +Normal vector x-component & $n_x$ & dimensionless &\\ +Normal vector y-component & $n_y$ & dimensionless &\\ +Normal vector z-component & $n_z$ & dimensionless &\\ +Normal vector pointing outward from the galcier & $\overrightarrow{n}$ & dimensionless &\\ +Effective pressure & $N_{eff}$ & Pa &\\ +Basal drag first exponent & $p$ & dimensionless &\\ +Ice pressure & $P$ & Pa &\\ +Atmosphere pressure & $P_{air}$ & Pa &\\ +Water pressure & $P_w$ & Pa &\\ +Basal drag second exponent & $q$ & dimensionless &\\ +Glacier's upper surface z-coordinate & $s$ & m &\\ +Ice temperature & $T$ & K &\\ +Glacier base temperature & $T_{b}$ & K &\\ +Pressure melting point & $T_{pmp}$ & K &\\ +Ice velocity x-component& $u$ & m s\textsuperscript{-1} &\\ +Depth averaged ice velocity x-component& $\overline{u}$ & m s\textsuperscript{-1} &\\ +Basal velocity x-component& $u_b$ & m s\textsuperscript{-1} &\\ +Basal velocity parallel to the bedrock surface & $\overrightarrow{u_b}$ & m s\textsuperscript{-1} &\\ +Ice velocity y-component& $v$ & m s\textsuperscript{-1} &\\ +Depth averaged ice velocity y-component& $\overline{v}$ & m s\textsuperscript{-1} &\\ +Basal velocity y-component& $v_b$ & m s\textsuperscript{-1} &\\ +Ice velocity &$\overrightarrow{v}$ & m s\textsuperscript{-1} &\\ +Ice velocity z-component& $w$ & m s\textsuperscript{-1} &\\ +Basal velocity z-component& $w_b$ & m s\textsuperscript{-1} &\\ +First horizontal coordinate & $x$ & m &\\ +Second horizontal coordinate & $y$ & m &\\ +Vertical coordinate & $z$ & m &\\ +Rate of change of melting point with pressure & $\beta$ & K Pa\textsuperscript{-1} & 9.8 $\times$ 10\textsuperscript{-8}\\ +Thermal exchange velocity & $\gamma$ & m s\textsuperscript{-1} & $\sim$1.00 $\times$ 10\textsuperscript{-4}\\ +Strain tensor & $\varepsilon$ & dimensionless &\\ +Strain rate tensor & $\dot{\varepsilon}$ & s\textsuperscript{-1} &\\ +Effective strain rate tensor & $\dot{\varepsilon}_e $ & s\textsuperscript{-1} &\\ +Ice viscosity & $\mu$ & Pa s &\\ +Viscous heating & $\Phi$ & W m\textsuperscript{-3} &\\ +Ice density & $\rho$ & kg m\textsuperscript{-3} & 916\\ +Ice density & $\rho_i$ & kg m\textsuperscript{-3} & 916\\ +Water density & $\rho_w$ & kg m\textsuperscript{-3} & 1000\\ +Stress tensor & $\sigma$ & Pa &\\ +Deviatoric stress tensor & $\sigma'$ & Pa &\\ +Effective shear stress & $\sigma_e$ & Pa &\\ +Friction stress & $\overrightarrow{\tau_b}$ & Pa &\\ +\hline +\end{longtable} +\end{center} + + + + + + + + + + + + + + + + + + + + +\newpage +\begin{thebibliography}{99} + +\bibitem{Glen1955} \textsc{Glen} J. W.,\newblock \emph{The creep of polycrystalline ice}. \newblock Proceedings of the Royal Society, London, 1955. + +\bibitem{Guillen2005} \textsc{Guill\'en-Gonz\`alez} F., \textsc{Rodr\'iguez-G\'omez} D., \newblock \emph{Bubble finite elements for the primitive +equations of the ocean}, Numerische Mathematik 101: 689-728, 2005. + +\bibitem{Holland1999} \textsc{Holland} D.M., \textsc{Jenkins} A., \newblock \emph{Modeling Thermodynamic Ice-Ocean Interactions at the Base of an Ice Shelf}. \newblock J. Phys. Oceanogr., 29, 1787-1800, 1999. + +\bibitem{Hooke2005} \textsc{Hooke} Roger LeB., \newblock \emph{Principles of Glacier Mechanics}. \newblock 2d Edition,Cambridge University Press, 2005. + +\bibitem{Hulbe1999} \textsc{Hulbe}, Christina L., \textsc{MacAyeal} Douglas \newblock \emph{A new numerical model of coupled inland ice sheet, ice stream, and ice shelf flow and its application to the West Antarctique Ice Sheet}. \newblock Journal of Geophysical Research, vol 104, B11, pages 25,349-25,366, November 10th, 1999. + +\bibitem{Larour2005} \textsc{Larour} \'Eric, \newblock \emph{Mod\'elisation numerique du comportement des banquises flottantes, valid\'ee par imagerie satellitaire}. \newblock Th\`ese de l'\'ecole doctorale de l'\'Ecole Centrale Paris, 2005. + +\bibitem{Macayeal1989} \textsc{MacAyeal} Douglas R., \newblock \emph{Large-scale Ice Flow Over a Viscous Basal Sediment: Theory and Application +}. \newblock Journal of Geophysical Research-Solid Earth and Planets, 1989. + +\bibitem{Macayeal1997} \textsc{MacAyeal} Douglas R., \newblock \emph{EISMINT: Lessons in Ice-Sheet Modelling +}. 21st May 1997.\\ \url{http://homepages.vub.ac.be/~phuybrec/pdf/MacAyeal.lessons.pdf} + +\bibitem{Nowicki2007} \textsc{Nowicki} Sophie M. J., \newblock \emph{Modelling the transition zone of marine ice sheets}, PhD Thesis of University College London, Centre for Polar Observation and Modelling Department of Space and Climate Physics, September 2007. + +\bibitem{Paterson1994} \textsc{Paterson} W. S. B., \newblock \emph{The Physics of glaciers}. \newblock 3ieme Edition, Butterworth Heinemann, 1994. + +\bibitem{Pattyn2003} \textsc{Pattyn} F., \newblock \emph{A new three-dimensional higher-order thermomechanical ice sheet model: basic sensitivity, ice stream development and ice flow across subglacial lakes} \newblock Journal of Geophysical Research (Solid Earth), 2003 + +\bibitem{Wriggers2002} \textsc{Wriggers} P., \newblock \emph{Computational Contact Mechanics} \newblock Springers 2d edition, 2002 + +\bibitem{Zienkiewicz1994} \textsc{Zienkiewicz}, O.C. and \textsc{Taylor} R.L., \newblock \emph{The Finite Element Method} \newblock Fourth +Edition. McGraw-Hill Book Company Europe. Berkshire England., 1994. +\end{thebibliography} +\end{document} Index: /issm/trunk/doc/userguide/Makefile =================================================================== --- /issm/trunk/doc/userguide/Makefile (revision 1) +++ /issm/trunk/doc/userguide/Makefile (revision 1) @@ -0,0 +1,23 @@ +#Makefile for ice documentation + +DEPENDENCIES=Amery.png \ + Antarctica.png \ + argus_DO.png \ + argus_Front.png \ + argus_GL.png \ + argus_Islands.png \ + argus_map.png \ + argus.png \ + contour.png \ + layers.png \ + userguide.tex + +all: userguide.pdf + +userguide.pdf: $(DEPENDENCIES) + pdflatex userguide.tex + pdflatex userguide.tex + pdflatex userguide.tex + +clean: + rm -rf *.dvi *.ps *.pdf *.toc *.log *.aux *.out Index: /issm/trunk/doc/userguide/userguide.tex =================================================================== --- /issm/trunk/doc/userguide/userguide.tex (revision 1) +++ /issm/trunk/doc/userguide/userguide.tex (revision 1) @@ -0,0 +1,1396 @@ +%%% Debut du preambule %%% + +\documentclass[letterpaper]{report} % Classe du document +\usepackage[T1]{fontenc} % Encodage de sortie (l'encodage T1 convient mieux aux langues autres que l'Anglais) +\usepackage{aeguill,aecompl} % Fontes virtuelles (nuit aux recherches et aux copies de texte dans le document PDF) pour PDF: + % ameliore la qualite de la visualisation avec Acrobat Reader + +%\hypersetup{colorlinks=true,linkcolor=blue,citecolor=magenta} + + +\title{ISSM documentation} +\author{Larour, Morlighem, Seroussi, Khazendar} +\date{2008} + +\usepackage{graphicx} % Inclusion d'images +\usepackage{array, multirow} % Tableaux +\usepackage{amsmath} % Mode mathematique +\usepackage{amsfonts} % Polices mathematiques +\usepackage{amssymb} % Symboles mathematiques +\usepackage{makeidx} +\usepackage{float} %Pour faire [H] sur les float +\usepackage[left=3cm, right=3cm, + top=2cm, bottom=2cm]{geometry} + +\usepackage{fancyhdr} + +\lhead{\leftmark{}} %en haut a gauche, titre de section +\rhead{\thepage} %en haut a droite, page +\lfoot{NASA - Jet Propulsion Laboratory} %en bas a gauche +\rfoot{\scriptsize{\today}} %en bas a droite +\cfoot{ISSM Documentation} %en bas, au milieu +\setcounter{tocdepth}{4} %pour afficher la table des matiere au niveau subsection +\setcounter{secnumdepth}{4} + + +\usepackage[plainpages=false]{hyperref} + +\hypersetup{% Links Options for the document% +colorlinks=true, +linkcolor=blue, +urlcolor=blue, +% anchorcolor=darkblue, +citecolor=blue, +plainpages=false, +%PDF Options% +pdftitle={Formulations}, +pdfauthor={Larour, Morlighem, Seroussi,Khazendar}, +pdfsubject={Numerical modelling of ice sheets}} + +\pagestyle{fancy} +\bibliographystyle{plain} + +%%% Fin du preambule %%% +\begin{document} +%%Page de titre + +\thispagestyle{empty} + +\vspace{10cm} +\begin{center} +\bf \LARGE Ice Sheet System Model 2008\\ User Guide +\end{center} + +\vspace{4cm} + +\begin{center} +Authors:\\ +\vspace{.5cm} +{\bf \large \'Eric Larour$^{1}$} \\ +\smallskip +{\bf \large Mathieu Morlighem$^{2,4}$} \\ +\smallskip +{\bf \large H\'el\`ene Seroussi$^{2,4}$} \\ +\smallskip +{\bf \large Ala Khazendar$^{2}$} \\ +\smallskip +{\bf \large \'Eric Rignot$^{2,3}$} \\ +\vfill +%\vspace{4.5cm} +$^{1}$Division 35, Thermal and Cryogenics Section, \\ +Mechanical Division, MS 157-316. \\ +Jet Propulsion Laboratory, 4800 Oak Grove Drive, Pasadena, CA 91109.\\ +\vspace{.2cm} +$^{2}$Division 33, Radar Science and Enginnering Section, \\ +Communications, Tracking and Radar Division, MS 157-316. \\ +Jet Propulsion Laboratory, 4800 Oak Grove Drive, Pasadena, CA 91109.\\ +\vspace{.2cm} +$^{3}$University of California, Irvine\\ +Department of Earth System Science\\ +Croul Hall, Irvine, CA 92697-3100\\ +\vspace{.2cm} +$^{4}$Laboratoire de M\'ecanique des sols, Structures et mat\'eriaux (MSSMat)\\ +\'Ecole Centrale Paris, CNRS UMR 8579\\ +Grande Voie des Vignes, 92295 Châtenay-Malabry Cedex, FRANCE\\ + +\vspace{0.5cm} +\today +\end{center} + +\cleardoublepage + +\begin{center} +{\Large \bf Summary} +\end{center} +This manual explains how to use the ISSM code, capable of modeling ice flow +in 2d and 3d using finite elements. + +\vspace{1cm} +Key-words: ISSM, ice flow, finite elements, 2-D, 3-D, matlab + +\cleardoublepage +\tableofcontents + +%\pagestyle{headings} +%\chapter*{Introduction} +%\markboth{CHAPTER 1: Introduction}{} +%\vspace{.5in} + +\pagestyle{headings} +\chapter{Installation} +\markboth{CHAPTER 2: Installation}{} + + +\vspace{.5in} + +\section{Fetching code from repository} +\label{Fetching_Code_From_Repository} + +$ISSM$ is actively managed using a code versioning system called CVS. The code is stored in a repository, and can +be remotely fetched, modified, updated, and uploaded. This allows for multiple users to develop the code in an +organized way. In order to fetch a version of the code, users will need to install CVS on their machine. This versioning +system is available at the following address: \url{http://www.nongnu.org/cvs/}. +Once CVS, issue the following command: +\begin{verbatim}> cvs -d useraccount@wilkes.jpl.nasa.gov:/home/larour/Ice_Repository co -r ice2 -P ice1 \end{verbatim} +This command will download the stable version of the code $ISSM$ named $ice2$ from the repository on the wilkes machine, located +in the $/home/larour/Ice_Repository$ directory, onto the current local directory (replace $useraccount$ by your user name on wilkes). Users are free to choose whichever location they want and to rename $ice1$. Users should not forget the $-P$ option. Failing to do so would allow CVS to fetch empty directories. +This would result in a code structure not intended by the developers. + +\section{Setting up $ISSM$} +In the main directory of $ISSM$ (initially named $ice1$), open the file $install.sh$ and modify the configuration if you need to: +\begin{itemize} +\item $CONFIG="config\_linux32.mk"$ for a 32 bits linux OS, +\item $CONFIG="config\_linux64.mk"$ for a 64 bits linux OS, +\item $CONFIG="config\_mac.mk"$ for Mac OS X +\end{itemize} +\noindent +Once the configuration files are properly setup, users should type $sh install.sh$ at the top level directory ice1 to run the installation sequence (compiling $C$ routines and modifying the startup file).\medbreak +\begin{verbatim}> sh install.sh \end{verbatim} + +\section{Code structure.} +\label{Code_Structure} + +$ISSM$ is a set of tools which can carry out various functions, all related to ice flow modeling. Its structure is apparent when +typing $ls\; -v$ at the command prompt. +\begin{verbatim}CVS CieloBindings Cron Doc Etc Makefile Mesh Model Public Solver Tests Trash +Utils archive.sh contributors.txt install.sh mailinglist startup.m todo\end{verbatim} +The $CVS$ directory is proper to the versioning system. You can just ignore it. The startup.m file we already alluded to. +The code is mainly composed of a mesher (Mesh directory), a model structure (Model directory) to hold the mesh and other +input parameters to an ice flow model, and a solver (Solver directory) that works on the model itself. There is also a documentation +(Doc directory) and a repository for old code (Trash directory). Finally, the Utils directory is a place holder for miscellaneous +code ranging from interpolation tools to display plotting routines, etc ... + +\pagestyle{headings} +\chapter{Getting started} + +\markboth{CHAPTER 3: Getting started}{} + + +\vspace{.5in} +\section{Location of the $startup.m$ file} + +When matlab is launched, all the $ISSM$ tools need to be correctly located. This is done by the $startup.m$ file located in the $ice1$ directory. +This file needs to be located in the starting directory of matlab, or in the directory where matlab will establish its root. + +\section{Creation of a model} +\label{Creation of a new model} +To create a new model, you can type the following command in Matlab's Command window: +\begin{verbatim} +> md=model; +\end{verbatim} +That will create a new model named "md" whose class is "model". The structure of a model contains much information: the mesh, the boundary conditions, the materials' properties, the results of the runs, etc...\\ +\\ +When one creates a new model, all these fields are empty or $NaN$ (not a number), but "md" is ready to be used as a model. Type $md$ in the command window if you want Matlab to print the fields contained in $md$.\\ +\\ +One can add a note and/or a name to the model in order to remember easily what it deals with: +\begin{verbatim} +> md.name='PineIslandGlacier'; +> md=addnote(md,'Pine Island Glacier test 1, geometry of 1996'); +\end{verbatim} + +\section{Mesh and Geometry.} +\label{Mesh} + +\subsection{Required files.} +\label{required files} +In order to set up properly the model, four files are required: +\begin{itemize} +\item A file that countains the coordinates of the domain outline, i.e. the domain one wishes to mesh: $DomainOutline.exp$. The contour must be closed and may contain holes. +\item A file that contains the grounding line of the glacier: $Iceshelves.exp$. The contour must be closed and may contain holes. +\item A file that contains the islands or ice rises in the ice shelf: $Islands.exp$. The contour must be closed and may contain holes. +\item A file that contains all the properties of the ice, the constants used in the simulation and other parameters: $Parameters.par$. +\end{itemize} +Usually, the first 3 files (with an "exp" extension) come from ARGUS and have the following shape: +\begin{verbatim} + ## Name:DomainOutline + ## Icon:0 + # Points Count Value + 5 1.000000 + # X pos Y pos + 0 0 + 1000000 0 + 1000000 1000000 + 0 1000000 + 0 0 +\end{verbatim} +The other file is a Matlab file that plugs all the parameters into the model $md$. + +\subsection{Meshing the domain} +\label{meshing the domain} +To mesh the domain, you need the file 'DomainOutline.exp' from ARGUS as explained above. Once again, the contour described in this file must be closed and can contain holes if needed. Then the following command will create the mesh: +\begin{verbatim} +> md=mesh(md,'DomainOutline.exp',5000); +\end{verbatim} +The first argument is the model you are working on, the second argument is the file from ARGUS containing the Domain Outline, and the last argument is the density of the mesh (the mean distance between 2 grids). +To see how the mesh looks like, one can type: +\begin{verbatim} +> plotmodel(md,'data','mesh') +\end{verbatim} + +\section{Geography of the domain} +\label{geography of the domain} + +The solver will use two different boundary conditions depending on the nature of the ice. An ice shelf will slide on the water whereas there is friction between an ice sheet and the bedrock for the grounded ice. The model must contain this field that tells whether the element is on an ice shelf or on an ice sheet. The files used come from ARGUS\footnote{If the whole domain is an ice shelf, use $md=geography(md,'all','')$. If the whole domain is grounded, use $md=geography(md,'','')$.}. To add this information to the model, type the following command: +\begin{verbatim} +> md=geography(md,'Iceshelves.exp','Islands.exp'); +\end{verbatim} +The first argument is the model and the two other arguments are the files containing the coordinates of the ice shelf included in the Domain Outline and the part of grounded ice included in the ice shelf part (Islands or ice rises). + +\section{Parametrization of the model} +\label{parametrization of the model} +To run a simulation, the solver needs many parameters: physical constants, number of iterations, relaxation constant, thickness and surface of the glacier, etc. All this information must be located in a file (The description of this file is given in Chapter \ref{parameterfile}). To plug all these data to the model, use the following command: +\begin{verbatim} +> md=parameterize(md,'Parameters.par'); +\end{verbatim} +The first argument is the model, and the second argument between quotes is the file containing all the parameters' values. +One can see chapter \ref{parameterfile} for more information on the parameter file. + +\section{Extrusion of the domain (optional)} +One can extrude the mesh, in order to use a 3 dimensional model (Pattyn's higher order model and Full Stokes model). This step is not mandatory if the user wants to keep a 2d model, skip this section. To extrude the mesh, type the following command: +\begin{verbatim} +> md=extrude(md,8,3); +\end{verbatim} +The first argument is the model ad usual. The second argument is the number of horizontal layers. A high number of layers gives a better precision for the simulations but creates more elements which require a longer computational time. Usually a number between 7 and 10 is a good balance. The third argument is called the extrusion exponent. Interesting things are happening near the bedrock usually and users might want to refine more the lower layers than the upper ones. An extrusion exponent of $1$ will create a mesh with layers vertically equally distributed. The higher the extrusion exponent, the more refined the base. An extrusion exponent of $3$ is generally enough. + +\section{Setting types of elements} + +$ISSM$ has the capability to compute the flow of a glacier with 4 different models: +\begin{itemize} +\item Hutter's ice sheet model (2d and 3d) +\item MacAyeal's shelfy stream model (2d and 3d) +\item Pattyn's higher order model (3d: extruded mesh only) +\item Full Stokes' model (3d: extruded mesh only) +\end{itemize} +\noindent +The ice flow model is specified for each element of the mesh. To assign the models to the elements, as an example the following command can be used: +\begin{verbatim} +> md=setelementstype(md,'pattyn','Pattyn.exp','macayeal',md.elementoniceshelf,'fill','hutter'); +\end{verbatim} +The routine $setelementstype$ works like $plotmodel$: it works with an even number of inputs (without counting $md$ itself). There are five possible options: +$'hutter'$, $'macayeal'$, $'pattyn'$, $'stokes'$ and $'fill'$. The first four options must be followed by one of the following argument: +\begin{itemize} +\item An ARGUS file containing a closed contour, the elements inside the contour will be assigned to the model given by the option. If user wants to assign the model to the elements outside the domain, add '~' to the name of the domain file (ex: '~Pattyn.exp'). +\item A vector of size $md.numberofelements$ holding 0, and 1 on the elements that the user had flagged. The model given by the option will be assigned to the elements flagged only. +\item $'all'$ if the user wants to assign the model to all the elements +\end{itemize} +\noindent +The last option $fill$ must be followed by the name of the model that the user wants the other elements (that have not been flagged by the other option) assigned to. All options are not required to be used. The previous example assigns the model of Pattyn for the element inside the contour $Pattyn.exp$, the model of MacAyeal for the elements located on the ice shelf. The other elements are Hutter's elements. If the user wants to use MacAyeal's model only, type the following command: +\begin{verbatim} +> md=setelementstype(md,'macayeal','all'); +\end{verbatim} +\pagestyle{headings} +\chapter{Solving and plot of the simulations' results} + +\markboth{CHAPTER 4: Solving}{} + + +\vspace{.5in} + +\section{Solver.} +\label{solver} +To run a simulation, type the following command: +\begin{verbatim} +> md=solve(md,'diagnostic','ice'); +\end{verbatim} +The first argument is the model, the second is the nature of the simulation one wants to run (it can be $'diagnostic'$, $'prognostic'$, $'thermalsteady$, $'thermaltransient'$, $'transient'$ $'control'$, $'parameters'$ or $'mesh2grid'$), and the last argument is the package the user wants to use to calculate the solution ($ice$ or $cielo$). If no solver is specified, the default solver is $'ice'$. +\begin{itemize} +\item If one runs a simulation using $'diagnostic'$, the solver will compute the velocity, the horizontal components only if the mesh is 2d, the three components if the mesh is 3d +\item The $'prognostic'$ solution will compute the new thickness of the ice sheet system depending of the time step of the model and the velocity field that must be already computed. The time step is given by $md.dt$ +\item The $'thermalsteady'$ simulation will solve the thermal fields of the model, ie the temperature and melting. To do so one needs to create a 3d mesh and to compute the velocity first. It solves a stationary solution for thermal, ie $\frac{\partial T}{\partial t}=0$ +\item The $'thermaltransient'$ simulation will solve the thermal fields of the model with a temporal evolution. An initial temperature is needed to run a $'thermaltransient'$ computation. One can precise the time step and number of iterations depends using $md.dt$ and $md.ndt$. All the intermediary results are saved in $md.thermaltransient_results$ +\item The $'transient'$ simulation will solve both velocity and thermal fields of the model with a temporal evolution. One can precise the time step and number of iterations depends using $md.dt$ and $md.ndt$. All the intermediary results are saved in $md.transient_results$ +\item The $'control'$ solution is a control method applied on the model Chapter \ref{controlmethods} a detailed description +\end{itemize} +You can compute additional fields with the $'parameters'$ solution, using $md.parameteroutput'$, such as $'stress'$, $'deviatoricstress'$, $'viscousheating'$, $'strainrate'$ or any combination of these fields given a a structure: +\begin{verbatim} +> md.parameteroutput={'stress','deviatoricstress'}; +> md=solve(md,'parameters'); +\end{verbatim} + +\section{Plots} +\label{plots} + +\subsection{Generality} +Once the simulation has converged, there are many fields of the model that one can plot very easily with the plotmodel function of the ISSM code. plotmodel takes the model $md$ as first argument and then an even number of options (like $setelementstype$). To plot a given field, use the option $'data'$ followed by the field one wants to plot. For the thickness: +\begin{verbatim} +> plotmodel(md, 'data', 'thickness') +\end{verbatim} +or alternatively +\begin{verbatim} +> plotmodel(md, 'data', md.thickness) +\end{verbatim} +You can plot several fields in the same time but you have to add the argument 'data' before each field you want to plot: +\begin{verbatim} +> plotmodel(md, 'data', 'thickness','data','surface','data','vel','data','elements_type') +\end{verbatim} +Most of the fields can be plotted: thickness, nodes on ice shelf, x-component of the velocity, thickness and surface of the glacier, etc... + +\subsection{Graphics options} +We saw in the previous section the option $'data'$. The option $'data'$ can be followed by: +\begin{itemize} +\item any field of the model structure +\vspace*{-0.5em} +\item $'boundaries'$: this will draw all the segment boundaries to the model, including rifts. +\vspace*{-0.5em} +\item $'deviatoricstress\_tensor'$: plot the components of the deviatoric stress tensor (tauxx, tauyy, tauzz, tauxy, tauxz, tauyz) if computed +\vspace*{-0.5em} +\item $'deviatoricstress\_principal'$: plot the deviatoric stress tensor principal axis and principal values +\vspace*{-0.5em} +\item $'deviatoricstress\_principalaxis1'$: arrow plot the first principal axis of the deviatoric stress tensor(replace 1 by 2 or 3 if needed) +\vspace*{-0.5em} +\item $'elements\_type'$: model used for each element +\vspace*{-0.5em} +\item $'elementnumbering'$: numbering of elements +\vspace*{-0.5em} +\item $'gridnumbering'$: numbering of grids +\vspace*{-0.5em} +\item $'highlight'$: highlights certain grids or elements when using 'gridnumbering' or 'elementnumbering' option +\vspace*{-0.5em} +\item $'mesh'$: draw mesh +\vspace*{-0.5em} +\item $'quiver'$: arrow plot of the velocity in 2d +\vspace*{-0.5em} +\item $'quiver3'$: arrow plot of the velocity in 3d +\vspace*{-0.5em} +\item $'quivervel'$: arrow plot of the velocity superimposed with its magnitude +\vspace*{-0.5em} +\item $'riftvel'$: velocities along rifts +\vspace*{-0.5em} +\item $'riftrelvel'$: relative velocities along rifts +\vspace*{-0.5em} +\item $'riftpenetration'$: penetration levels for a fault +\vspace*{-0.5em} +\item $'strainrate\_tensor'$: plot the components of the strain rate tensor (exx, eyy, ezz, exy, exz, eyz) if computed +\vspace*{-0.5em} +\item $'strainrate\_principal'$: plot the strain rate tensor principal axis and principal values) +\vspace*{-0.5em} +\item $'strainrate\_principalaxis1'$: arrow plot the first principal axis of the strain rate tensor (replace 1 by 2 or 3 if needed) +\vspace*{-0.5em} +\item $'stress\_tensor'$: plot the components of stress tensor (sxx,syy,szz,sxy,sxz,syz) if computed +\vspace*{-0.5em} +\item $'stress\_principal'$: plot the stress tensor principal axis and principal values) +\vspace*{-0.5em} +\item $'stress\_principalaxis1'$: arrow plot the first principal axis of the stress tensor (replace 1 by 2 or 3 if needed) +\vspace*{-0.5em} +\item $'transient\_results'$: this will display all the time steps of a transient run +\vspace*{-0.5em} +\item $'transient\_movie'$: this will display the time steps of a given field of a transient run +\vspace*{-0.5em} +\item $'thermaltransient\_results'$: this will display all the time steps of a thermal transient run +\end{itemize} +But there are other options such as: +\begin{itemize} +\item $'caxis'$: modify colorbar range. (array of type $[a\quad b]$ where $b\leq a$) +\vspace*{-0.5em} +\item $'colorbar'$: add colorbar (string $'on'$ or $'off'$) +\vspace*{-0.5em} +\item $'colormap'$: same as standard matlab option +\vspace*{-0.5em} +\item $'wrapping'$: repeat $n$ times the colormap ($n$ must be an integer); +\vspace*{-0.5em} +\item $'edgecolor'$: same as standard matlab option +\vspace*{-0.5em} +\item $'fontsize'$: same as standard matlab option +\vspace*{-0.5em} +\item $'fontweight'$: same as standard matlab option +\vspace*{-0.5em} +\item $'resolution'$: resolution used by section value (array of type $[horizontal\_resolution vertical\_resolution]$) $horizontal\_resolution$ must be in meter, and $vertical\_resolution$ a number of layers +\vspace*{-0.5em} +\item $'showsection'$: show section used by 'sectionvalue' (string $'yes'$) +\vspace*{-0.5em} +\item $'sectionvalue'$: give the value of data on a profile given by an Argus file +\vspace*{-0.5em} +\item $'smooth'$: smooth element data (string $'yes'$) +\vspace*{-0.5em} +\item $'title'$: same as standard matlab option +\vspace*{-0.5em} +\item $'view'$: same as standard matlab option +\vspace*{-0.5em} +\item $'xlim'$: same as standard matlab option +\vspace*{-0.5em} +\item $'ylim'$: same as standard matlab option +\vspace*{-0.5em} +\item $'zlim'$: same as standard matlab option +\vspace*{-0.5em} +\item $'xlabel'$: same as standard matlab option +\vspace*{-0.5em} +\item $'ylabel'$: same as standard matlab option +\end{itemize} +Any options (except $'data'$) can be followed by $'\#i'$ where $'i'$ is the subplot number, or $'\#all'$ if applied to all plots. For example: to plot the velocity and the mesh at the same time, with a colorbar for both plots bot a 2d view for the mesh: +\begin{verbatim} +> plotmodel(md,'data','vel','data','mesh','view#2',3,'colorbar#all','on') +\end{verbatim} + +\section{Saving the model} +\label{saving the model} +One can save the model with all its fields so that the saved file contains all the information in the model, type the following command: +\begin{verbatim} +> save square.model md +\end{verbatim} +That will create a file $square.model$ made from the model md. To load this file, type: +\begin{verbatim} +> loadmodel square.model +\end{verbatim} +the loaded model will be named $md$. + +\pagestyle{headings} +\chapter{Control Methods} +\label{controlmethods} + +\markboth{CHAPTER 5: Control Methods}{} + + +\vspace{.5in} +$ISSM$ allows control method on the drag ($drag$) and the viscosity parameter ($B$) spatial distribution for 2d meshes, when an observed velocity field is known and plugged in $md.vx\_obs$, $md.vy\_obs$ and $md.vel\_obs$ (See parameter file section for more details). This section explains how to launch a control method and which parameters must be tuned. +\section{Misfits} + +The control methods can use different types of misfit. The misfit must be entered in $md.fit$. it can be \emph{Absolute}, \emph{Relative} or \emph{Logarithmic}. + +\subsection{Absolute misfit} + + This is the classic way of calculating a misfit between a modeled and observed velocity field: + +\begin{equation} +J=\iint_{\Omega\cup\partial\Omega} \dfrac{1}{2}\left( (u-u^{obs})^{2}+(v-v^{obs})^{2}\right) d\Omega +\end{equation} +\\ +where: +\begin{itemize} +\item [--] $u$: is the glacier modeled velocity projected on the x-axis +\item [--] $v$: is the glacier modeled velocity projected on the y-axis +\item [--] $u^{obs}$: is the glacier modeled velocity projected on the x-axis +\item [--] $v^{obs}$: is the glacier modeled velocity projected on the y-axis +\end{itemize} + +\subsection{Relative misfit} + +The relative misfit is defined as follows: + +\begin{equation} +J=\iint_{\Omega\cup\partial\Omega} \dfrac{1}{2}\left( +\dfrac{\overline{vel}^2}{(u^{obs}+\varepsilon)^{2}}(u-u^{obs})^{2} ++\dfrac{\overline{vel}^2}{(v^{obs}+\varepsilon)^{2}}(v-v^{obs})^{2}\right) d\Omega +\end{equation} +\\ +where: +\begin{itemize} +\item [--] $u$: is the glacier modeled velocity projected on the x-axis +\item [--] $v$: is the glacier modeled velocity projected on the y-axis +\item [--] $u^{obs}$: is the glacier modeled velocity projected on the x-axis +\item [--] $v^{obs}$: is the glacier modeled velocity projected on the y-axis +\item [--] $\overline{vel}$: is an averaged velocity used for dimensional purposes, usually, one takes $md.meanvel=$ 1000 m/year (to be converted into m/s) +\item [--] $\varepsilon$: is a minimum velocity used to avoid the observed velocity being equal to zero. One takes usually $md.eps=eps$ (Matlab's epsilon) +\end{itemize} + +\subsection{Logarithmic misfit} + +The relative misfit is defined as follows: + +\begin{equation} +J=\iint_{\Omega\cup\partial\Omega} 4 \;\overline{vel}^2\left( +ln\left(\dfrac{vel+\varepsilon}{vel^{obs}+\varepsilon} \right) \right)^2 d\Omega +\end{equation} +\\ +where: +\begin{itemize} +\item [--] $vel$: is the glacier modeled velocity +\item [--] $vel^{obs}$: is the glacier modeled velocity +\item [--] $\overline{vel}$: is an averaged velocity used for dimensional purposes, usually, one takes $md.meanvel=$ 1000 m/year (to be converted into m/s) +\item [--] $\varepsilon$: is a minimum velocity used to avoid the observed velocity being equal to zero. One takes usually $md.eps=eps$ (Matlab's epsilon) +\end{itemize} + +\section{Control Methods parameters} +\subsection{Control type} +One can choose which parameter to optimize. This is registered in $md.control\_type$ in a cell. For exemple, if one wants to optimize the viscosity parameter spatial distribution: +\begin{verbatim} +> md.control_type={'B'}; +\end{verbatim} +If one wants to optimize several parameters such as $drag$ and $B$: +\begin{verbatim} +> md.control_type={'B','drag'}; +\end{verbatim} + +\subsection{Constraints} + +Usually, the viscosity or the drag are constrained. For example the viscosity can not be negative. To prevent the inversed parameters from being out of the physical range, enter the constraints values in $md.mincontrolconstraint$ and $md.maxcontrolconstraint$. If one does not wish to constrain the inverse parameters, enter NaN.\\ +\\ +For example, if one wants to optimize the $drag$ and the viscosity parameter $B$, with the following constraints: +\begin{equation} + 0 \leq drag \quad \quad \quad 10\leq B\leq 10^9 +\end{equation} +type: +\begin{verbatim} +> md.mincontrolconstraint=[0,10]; +> md.maxcontrolconstraint=[NaN,10^9]; +\end{verbatim} + +\subsection{optimization parameters} + +\subsubsection{$md.nsteps$} +This is done a given number of times set in $md.nsteps$. For example, if one wants 100 iterations, type +\begin{verbatim} +> md.nsteps=100; +\end{verbatim} +The other control parameters ($md.optscal$, $md.fit$ and $md.maxiter$) must have a length equal to $md.nsteps$. + +\subsubsection{$md.optscal$} +At each iteration, the routine evaluates the gradients of the misfit with respect to the inversed parameters spatial distribution and updates each parameter spatial distribution using a scalar as follows: + +\begin{equation} +P^{new}=P^{old}+dimensionalscalar\times scalar\times \dfrac{\overrightarrow{gradient}}{\max (\overrightarrow{gradient}_i)} +\end{equation} +\\ +The scalar is calculated by a C routine and is constrained between 0 and 1. The dimensional scalar is a constant and must be entered in $md.optscal$. We recommand to use $10^8$ for the viscosity and $10$ for the drag. For example, if one inverses the drag and the viscosity: +\begin{verbatim} +> md.optscal=[10*ones(md.nsteps,1) 10^8*ones(md.nsteps,1)]; +\end{verbatim} + +\subsubsection{$md.fit$} +We aw that there were three possible misfits. A misfit of 0 is associated to an absolute misfit, 1 to a relative misfit and 2 to a logarithmic misfit. If one wants half logarithmic and half absolute, use the following command: +\begin{verbatim} +> md.misfit=[2*ones(floor(md.nsteps/2),1); 0*ones(ceil(md.nsteps/2),1)]; +\end{verbatim} + +\subsubsection{$md.tolx$ and $md.maxiter$} +At each iteration, the routine search for a scalar between 0 and 20. It stops when the difference of the cost function between 2 scalars is less than $md.tolx$, or when it reaches a maximum number of iteration $md.maxiter$. We recommend : +\begin{verbatim} +> md.tolx=10^{-4}; +> md.maxiter=20*ones(md.nsteps,1); +\end{verbatim} + + +\section{Launching a control method} +Control methods are not performed with the package $ice$ for computational time reasons. Only $CIELO$ has control methods implemented. To launch a control method, fill all the previous fields and type: +\begin{verbatim} +> md=solve(md,'control','cielo'); +\end{verbatim} + +\pagestyle{headings} +\chapter{Cluster computing} +\label{cluster} + +\markboth{CHAPTER: cluster computing.}{} + + +\vspace{.5in} +$ISSM$ can use the $CIELO$ software to run in parallel on a cluster. This section shows how to use this capability. +\section{Setting up the environment to use Cielo} + +We assume users have correctly setup $CIELO$ in the directory $CIELODIR$, on the cluster $CLUSTERNAME$. In order for $ISSM$ to recognize +the settings for this cluster, users should edit the file $cielo.rc$ found in the Etc/ directory of $ISSM$. This file list all the clusters +recognized by $CIELO$. Two fields in particular are of interest, $server\_codepath$, which should be $CIELODIR/server\_delivery$, and +$server\_executionpath$, which should be the name of a directory where the logs of the parallel computation will be dumped. Let's call it $TESTINGDIR$ +for now. Once those two paths are setup, $ISSM$ should be ready to be used with $CIELO$. + +\section{Using Cielo} +Given a model md, users can check where the computation will occur by typing: + +\begin{verbatim} +> md.solpar +\end{verbatim} + +A list of solution parameters will ensue. The part regarding use of a cluster is displayed here: + +\begin{verbatim} +'parallelisation' + cluster: astrid (set to 'cluster_name' to run in cluster, 'none' to run serially) + np: 8 (number of CPUS requested on cluster) + 'ice' + scheduler_configuration: local (name of cluster configuration used from Parallel Matlab toolbox) + 'cielo' + batch: 1 (is cluster running in batch mode (batch=1), or in client/server mode (batch=0, default) + exclusive: 0 (set to 1 if CPUS used are not to be shared with other users, 0 otherwise) + time: 10 (amount of time requested on cluster) + alloc_cleanup: 0 (allocation cleanup before starting a job, default 1) + queue: (queue name) + +\end{verbatim} + +This indicates that the cluster being used is 'astrid', with 8 processors (np=8), in batch mode (batch=1). Those three parameters are needed to run +using cielo. + +\begin{verbatim} +md.cluster='wilkes'; +md.np=8; +md.batch=1; +\end{verbatim} + +Once those parameters are setup, users can use three solution sequences (for now): diagnostic\_horiz, control and thermalsteady. The solution sequences +are called the same way, but specifying cielo as the computational engine. + +\begin{verbatim} +md=solve(md,'diagnostic_horiz','cielo'); +\end{verbatim} + +Once the computation is over (check the logs in $TESTINGDIR$), users can load the results using: + +\begin{verbatim} +md=loadresultsfromcluster(md,'diagnostic_horiz'); +\end{verbatim} + +The following fields 'errlog' and 'outlog' in the model structure will hold the run logs. If errlog is not empty, something probably went wrong. + +\section{Faq} + +\begin{verbatim} +The following message appears in the errlog file when launching my job in batch mode. +mpdrun_wilkes.jpl.nasa.gov: cannot connect to local mpd (/tmp/mpd2.console_larour); possible causes: + 1. no mpd is running on this host + 2. an mpd is running but was started without a "console" (-n option) + ~ + ~ + ~ + ~ +\end{verbatim} +This message means that the MPI (Message Passing Interface) server, called mpd, is not running. Therefore, no parallel jobs can run on the +cluster. To solve this issue, just type, at the command prompt on the server side (if for example your cluster has 8 cpus): +\begin{verbatim} +mpd --ncpus=8 & +\end{verbatim} +This will laucn the MPI server to manage 8 cpus on the cluster. + + + +\pagestyle{headings} +\chapter{Rifts} +\label{rifts} + +\markboth{CHAPTER 6: Rifts}{} + + +\vspace{.5in} +$ISSM$ allows simulation of rifts. This section explains how to create a model that includes rifts, and how to control their behaviour. +\section{Rifts creation} + +Rifts can be included right between the phase where the mesh is created, and the phase where the geography is setup. Rifts that should be included in the model must be +present in an Argus type file. Each rift should be represented by an open loop set of points. Infinite numbers of rifts can be included, provided they do not interset +with the domain outline, or any other rift. This point is particularly important as there are no checks on intersections at the meshing phase. +For example, a file including two straight rifts could look like, Rifts.exp: +\begin{verbatim} +## Name:Rift1 +## Icon:0 +# Points Count Value +2 1.000000 +# X pos Y pos +0 0 +50000 0 + +## Name:Rift2 +## Icon:0 +# Points Count Value +2 1.000000 +# X pos Y pos +0 10000 +50000 10000 + +\end{verbatim} +this file includes two horizontal rifts of 50 km long, separated by 10 km. + +In order to create a model with these rifts, one would do: +\begin{verbatim} +> md=model; +> md=mesh(md,'DomainOutline.exp','Rifts.exp',4000); +> md=meshprocessrifts(md); +> md=geography(md,'Iceshelves.exp','Islands.exp'); +> etc ... +\end{verbatim} +The rest of the process is similar. This will create a rifts structure in the model md. The rifts structure holds as many +members as there are rifts in Rifts.exp. The key fields in the rifts structure, are the fill and friction. +Fill can be either 1 (for water), 2 (for air) and 3 (for ice). Fill determines the pressure on each flank of the rifts that is being +applied. friction is a coefficient between the shear stress exerted on the rift flanks, and the differential tangential velocity between +both flanks. + +\section{Rifts tip refining} + +Rifts in a mesh will not modify the type of meshing occuring during the mesh phase. To impact the mesh, one can use the riftstiprefine.m +routine. This routine will ensure that the rift tips are correctly refined, to take into account the tip stress singularity. Use of this routine +is as follows: +\begin{verbatim} +> md=model; +> md=mesh(md,'DomainOutline.exp','Rifts.exp',4001); +> md=rifttipsrefine(md,2000,30000); +> md=meshprocessrifts(md); +> md=geography(md,'Iceshelves.exp','Islands.exp'); +> etc ... +\end{verbatim} +the first argument is the model, the second argument the tip area resolution, and the third is the size of the circle around the tips where +mesh refinement should occur. + +\section{Rifts in parameter file} +The structure rifts can be modified in any parameter file. We do not advise touching anything except the fill and friction for each one of the +rifts in the structure. For example, inclusion of the following lines in the parameter file should be enough: +\begin{verbatim} +> for i=1:md.numrifts, +> md.rifts(i).fill=1 %include water in the rifts +> md.rifts(i).friction=10^11 %friction parameter sigma=10^11*dv_t +> end +\end{verbatim} +Of course, different frictions and fill could be applied, according to the physics being captured. + +\section{Solving for rifts} + +Rifts are only allowed when using MacAyeal type elements, in 2d meshes. For now, 3d meshes are not supported. Nothing is needed +to take rifts into account in the solve phase. A simple: +\begin{verbatim} +> md=solve(md,'diagnostic','ice'); +\end{verbatim} +will suffice. Bear in mind, rifts are handled using penalty methods, to ensure that penetration of rift flanks does not occur. This can be +very computationally expensive, as penalty methods tend to lead to zigzagging of contact. A stable set of constraints strategy has been implemented, +which should guarantee convergence, but which can be slow. Users should also try to minimize zigzagging by refining the mesh where +needed. In case zigzagging becomes too intense, locking of the zigzagging penalties will occur, which ensures convergence, but which can lead to +bad results in a physical sense. Detecting penalty locking should give users an idea on where to refine the mesh. + +\section{Rifts plotting} + +Rifts can be plotted using the following special plots: +\begin{verbatim} +> plotmodel(md,'data','riftpenetration','data','riftvel','data','riftrelvel'); +> end +\end{verbatim} +these three plots will give users a view of which parts of the rifts are opening, closing, at which relative speed, etc ... + + +\pagestyle{headings} +\chapter{Parameter file} +\label{parameterfile} + +\markboth{CHAPTER 7: parameter file}{} + + +\vspace{.5in} +This chapter indicates all the fields the parameter file must contain. These fields are divided into five parts: material parameters, other physical parameters, boundary conditions, observations and solution parameters. +One can type $md$ to see all the parameters that the model md contains.\\ +This file is created for a two dimensional mesh. The parameters will be automatically extruded if a part of the mesh is extruded. Number of elements, number of grids refer to the number of elements and grids in the two dimensional mesh. + +\section{Material parameters} +\label{material parameters} +This section indicates all the fields of the model dealing with the material parameters. +One must add all these fields in the parameter file. One can access to all these fields typing $md.mat$ +The list of all these fields is presented below: + +\begin{itemize} +\item $md.rho\_ice$: ice density (in $kg/m^3$) +\item $md.rho\_water$: water density (in $kg/m^3$) +\item $md.heatcapacity$: ice heat capacity (in $J/kg/K$) +\item $md.thermalconductivity$: ice thermal conductivity (in $W/m/K$) +\item $md.beta$: depression of the melting point due to pressure (in $K/Pa$) +\item $md.B$: viscosity parameter, given in $Pa/s^{\frac{1}{n}}$. This field must be an array of size the number of elements +\item $md.n$: empirical constant of Glen's flow law. This field must be an array of size the number of elements +\end{itemize} + +\section{Other physical parameters} +\label{other parameters} +This section indicates all the fields of the model dealing with all the other physical and geometrical parameters + +\subsection{Physical parameters} + +\begin{itemize} +\item $md.g$: constant of gravity (in $m/s^2$) +\item $md.drag\_type$: type of drag for the basal friction. 0 for none, 1 for plastic and 2 for viscous +\item $md.drag$: drag coefficent $k$ defined as +\begin{equation} +\overrightarrow{\tau_b} = -k^2 N_{eff}^r \|\overrightarrow{v} \|^{s-1}\overrightarrow{u_b} +\end{equation} +This field must be an array of size the number of grids. (see Theory guide p. 11) +\item $md.p$: drag constant described above ($r=q/p$ and $s=1/p$). This field must be an array of size the number of elements +\item $md.q$: drag constant described above ($r=q/p$ and $s=1/p$). This field must be an array of size the number of elements +\end{itemize} + +\subsection{Geometrical parameters} + +\begin{itemize} +\item $md.surface$: height of the glacier surface (in $m$). This field must be an array of size the number of grids. The surface must be positive for the grids on ice shelf +\item $md.thickness$: glacier thickness (in $m$). This field must be an array of size the number of grids. The thickness must be positive for every grid +\item $md.firn\_layer$: firn thickness on top of the ice (in $m$). This field must be an array of size the number of grids. The thickness of firn must be positive for every grid +\item $md.bed$: bed height of the ice (in $m$). This field must be an array of size the number of grids +\end{itemize} + +\section{Boundary conditions} +\label{boundary conditions} +This section indicates all the fields of the model dealing with all the boundary conditions. + +\subsection{Diagnostic parameters} + +\begin{itemize} +\item $md.gridondirichlet\_diag$: 1 if the grid has a dirichlet boundary condition and 0 else. This field must an array of size the number of grids +\item $md.dirichletvalues\_diag$: value of the dirichlet boundary condition. This field must an array of size the number of grids +\item $md.segmentonneumann\_diag$: matrix of 3 columns. Each line holds the characteristics of one segment located on a Neumann type boundary condition. The first column is the first grid number of the segment, the second column is the second grid number and the last column is the element number that holds the two previous grids. +\item $md.neumannvalues\_diag$: value of the Neumann boundary condition (in $N$), NaN if there is only the water pressure. This field must an array of size the number of segments on the boundaries +\end{itemize} + +\subsection{Prognostic parameters} + +\begin{itemize} +\item $md.gridondirichlet\_prog$: 1 if the grid has a Dirichlet boundary condition and 0 else. This field must an array of size the number of grids +\item $md.dirichletvalues\_prog$:value of the Dirichlet boundary condition. This field must an array of size the number of grids +\item $md.segmentonneumann\_prog$: matrix of 3 columns. Each line holds the characteristics of one segment located on a Neumann type boundary condition. The first column is the first grid number of the segment, the second column is the second grid number and the last column is the element number that holds the two previous grids. +\item $md.neumannvalues\_prog$: value of the neumann boundary condition, NaN if there is only the water pressure. This field must an array of size the number of segments on the boundaries +\item $md.segmentonneumann\_prog2$: matrix of 3 columns. Each line holds the characteristics of one segment located on a Neumann type boundary condition. The first column is the first grid number of the segment, the second column is the second grid number and the last column is the element number that holds the two previous grids. +\item $md.neumannvalues\_prog2$: value of the Neumann boundary condition, NaN if there is free radiation. This field must an array of size the number of segments on the boundaries +\end{itemize} + +\subsection{Thermal parameters} + +\begin{itemize} +\item $md.gridondirichlet\_thermal$: 1 if the grid has a thermal Dirichlet boundary condition and 0 else. This field must an array of size the number of grids +\item $md.dirichletvalues\_thermal$: value of the thermal Dirichlet boundary condition (in $K$). This field must an array of size the number of grids +\end{itemize} + +\section{Observations} +\label{observations} +This section indicates all the fields of the model dealing with all the observations. + +\begin{itemize} +\item $md.vx\_obs$: velocity field in the x direction (in $m/a$). This field must be an array of size the number of grids +\item $md.vy\_obs$: velocity field in the y direction (in $m/a$). This field must be an array of size the number of grids +\item $md.vel\_obs$: velocity field (norm of the velocity in $m/a$). This field must be an array of size the number of grids +\item $md.observed\_temperatures$: field of surface temperatures of ice (in $K$). This field must be an array of size the number of grids +\item $md.accumulation$: field of accumulation of snow (in $ m/a$). This field must be an array of size the number of grids +\item $md.melting$: field of melting rate (in $ m/a$). This field must be an array of size the number of grids +\item $md.geothermal\_flux$: field of geothermal flux (in $W/m^2$). This field must be an array of size the number of grids +\end{itemize} + +\section{Solution parameters} +\label{solution parameters} +This section indicates all the fields of the model dealing with all the solution parameters. + +\subsection{Parallelization parameters} +The list below deals with the parameters used for the parallelization of the code. + +\begin{itemize} +\item $md.cluster$: indicates the name of the cluster one wants to use ('none' for the package 'ice') +\item $md.bash$: indicates if the bash mode is activated (0 for the package 'ice', 1 for CIELO) +\item $md.np$: number of CPUs to use for the cluster (8 for $wilkes$) +\item $md.exclusive$: 1 +\item $md.time$: 1 +\end{itemize} + +\subsection{Statics parameters} +The list below deals with the parameters needed for a static solution. + +\begin{itemize} +\item $md.eps\_rel$: relative velocity convergence criterion +\item $md.eps\_abs$: absolute velocity convergence criterion (NaN if not desired) +\item $md.penalty\_offest$: magnitude of penalty stiffness for contact problems: $\kappa=10^{penalty\_offest}\times max(abs(K))$ where $K$ is the initial stiffness matrix +\item $md.lowmem$: field for memory. 0 unless you are running low on cluster memory, then 1 +\item $md.sparsity$: matrix sparsity +\item $md.acceleration$: 1 if accelerated Mac Ayeal's solution, else 0 ($'ice'$ only) +\item $md.debug$: 1 if user wants to print the detail of each non linear iteration. +\end{itemize} + +\subsection{Dynamics parameters} +The list below deals with the parameters needed for a dynamic solution + +\begin{itemize} +\item $md.dt$: time step in year +\item $md.ndt$: time span in year +\item $md.artificial\_diffusivity$: turn on or off the artificial viscosity for prognostic and transient solutions. This field must be 1 or 0 +\item $md.minh$: minimum thickness to avoid stiffness singularity. +\end{itemize} + +\subsection{Control parameters} +The list below deals with the parameters needed for a control method + +\begin{itemize} +\item $md.control_type$: list of parameters where inverse control is carried out, for example 'drag' or 'B' +\item $md.fit$: type of fit for the control method. This field can be 'absolute', 'relative' or 'logarithmic'. The default value is 'absolute' +\item $md.meanvel$: this constant is used for relative and logarithmic fits +\item $md.epsvel$: minimum velocity used for relative and logarithmic fits +\item $md.maxiter$: maximum iterations during one optimization search +\item $md.nsteps$: number of optimization searches +\item $md.optscal$: scaling factor on gradient during optimization +\item $md.mincontrolconstraint$: list containting the minimum tolerated for the inversed parameters +\item $md.maxcontrolconstraint$: list containting the maximum tolerated for the inversed parameters +\end{itemize} + + +\section{Example of parameter file} +\label{example of parameter file} + +Here is an example of a parameter file for a square ice shelf. We assume that the file $Front.exp$ already exists and is a closed contour holding the nodes in the ice front.\\ +The program $ArgusContourToMesh$ is a Matlab routine located in the directory $Utils$. It flags the grids or elements that are within a contour from an Argus contour and a mesh. +\begin{verbatim} +%Ok, start defining model parameters here + +%material parameters + md.g=9.8; + md.rho_ice=917; + md.rho_water=1023; + di=md.rho_ice/md.rho_water; + md.yts=365*24*3600; + md.heatcapacity=2009; + md.thermalconductivity=2.2; %W/mK + md.beta=9.8*10^-8; + +%Solution parameters + %parallelization + md.cluster='none'; + md.np=2; + md.time=1; + md.exclusive=0; + + %statics + md.lowmem=1; + md.eps_abs=10; + md.eps_rel=0.01; + md.penalty_offset=3; + md.penalty_melting=10^7; + if md.numberofgrids<1000000, + md.sparsity=.001; + else + md.sparsity=.0001; + end + + %dynamics + md.dt=1*md.yts; %1 year + md.ndt=md.dt*10; + md.artificial_diffusivity=1; + + %control + md.control_type={'drag'}; %'drag', 'B' + md.nsteps=5; + md.tolx=10^-4; + md.maxiter=20; + md.optscal=10; + md.fit='logarithmic'; %'absolute','relative','logarithmic' + md.meanvel=1000/md.yts; %1000 meters/year + md.epsvel=eps; + +%Geometry + disp(' creating thickness'); + hmin=300; + hmax=1000; + ymin=min(md.y); + ymax=max(md.y); + md.thickness=hmax+(hmin-hmax)*(md.y-ymin)/(ymax-ymin); + md.firn_layer=10*ones(md.numberofgrids,1); + md.bed=-di*md.thickness; + md.surface=md.bed+md.thickness; + + disp(' creating velocities'); + md.vx_obs=zeros(md.numberofgrids,1); + md.vy_obs=zeros(md.numberofgrids,1); + md.vel_obs=sqrt(md.vx_obs.^2+md.vy_obs.^2); + + disp(' creating drag'); + md.drag_type=2; %0 none 1 plastic 2 viscous + md.drag=200*ones(md.numberofgrids,1); %q=1. + %Take care of iceshelves: no basal drag + pos=find(md.elementoniceshelf); + md.drag(md.elements(pos,:))=0; + md.p=ones(md.numberofelements,1); + md.q=ones(md.numberofelements,1); + + disp(' creating temperature'); + md.observed_temperature=(273-20)*ones(md.numberofgrids,1); + + disp(' creating flow law paramter'); + md.B=paterson(md.observed_temperature); + md.n=3*ones(md.numberofelements,1); + + disp(' creating accumulation rates'); + md.accumulation=ones(md.numberofgrids,1)/md.yts; %1m/a + md.melting=0*ones(md.numberofgrids,1)/md.yts; %1m/a + +%Boundary conditions: + disp(' boundary conditions for diagnostic model: '); + %Build gridonicefront, array of boundary grids belonging to the icefront: + gridinsideicefront=ArgusContourToMesh(md.elements,md.x,md.y,expread('Front.exp',1),'node'); + gridonicefront=double(md.gridonboundary & gridinsideicefront); + + md.gridondirichlet_diag=zeros(md.numberofgrids,1); + pos=find(md.gridonboundary & ~gridonicefront);md.gridondirichlet_diag(pos)=1; + md.dirichletvalues_diag=zeros(md.numberofgrids,2); + + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_diag=md.segments(pos,:); + %dynamic boundary conditions (water pressure) + md.neumannvalues_diag=NaN*ones(length(md.segmentonneumann_diag),1); + + disp(' boundary conditions for prognostic model: '); + md.gridondirichlet_prog=zeros(md.numberofgrids,1); + md.dirichletvalues_prog=zeros(md.numberofgrids,1); + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_prog=md.segments(pos,:); + md.neumannvalues_prog=zeros(size(md.segmentonneumann_prog,1),1); + md.neumannvalues_prog(:)=NaN; %free radiation + + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_prog2=md.segments(pos,:); + md.neumannvalues_prog2=zeros(size(md.segmentonneumann_prog2,1),1); + md.neumannvalues_prog2(:)=NaN; %free radiation + + disp(' boundary conditions for thermal model: '); + md.gridondirichlet_thermal=ones(md.numberofgrids,1); %surface temperature + md.dirichletvalues_thermal=md.observed_temperature; + md.geothermalflux=zeros(md.numberofgrids,1); + pos=find(md.elementonicesheet);md.geothermalflux(md.elements(pos,:))=50*10^-3;%50 mW/m^2 +\end{verbatim} + + + + \chapter{Example} +This section gives the reader an example of simulation using $gdal$, $Argus$ and $ISSM$ to calculate the velocity field of Amery Glacier. + +\section{Radar Image} +In order to build a proper domain outline, one needs an image of the glacier. This image is often a radar image that needs to be resized. +The tools for accomplishing this feat are $gdal\_translate$ and $gdalwarp$, both part of the $GDAL$ suite of utilities (\url{www.gdal.org}). +For this example we will be using the Antarctica mosaic LIMA, available on \url{http://lima.nasa.gov/} +\begin{figure}[H] +\begin{center} +\includegraphics[width=10cm]{Antarctica.png} +\caption{Original radar image} +\label{Antarctica} +\end{center} +\end{figure} +\noindent To know the original mosaic properties, type +\begin{verbatim} +> gdalinfo file.gif +\end{verbatim} +where $file.gif$ is the name of this mosaic. At the end of the properties, the coordinates of the corners are displayed: +\begin{verbatim} + Corner Coordinates: + Upper Left (-3174450.000,2406320.000) + Lower Left (-3174450.000,-2816080.000) + Upper Right (2867150.000,2406320.000) + Lower Right (2867150.000,-2816080.000) + Center (-153650.000,-204880.000) +\end{verbatim} +The first step is to determine the coordinates for the box of interest. In this case we will just pull out Amery Glacier. The bounding box is approximately 1549950, 951120 to 2259950, 554120 (upper left to lower right). To extract Amery from the mosaic, we use: +\begin{verbatim} +> gdal_translate -a_ullr 1549950 951120 2259950 554120 + -projwin 1549950 951120 2259950 554120 file.tif Amery.tif +\end{verbatim} +The $-projwin$ option specifies the area one wants to clip out of the mosaic using the coordinate system. We also used the $-a\_ullr$ option to force the output image to have the bounding coordinates we want. The result is: +\begin{figure}[H] +\begin{center} +\includegraphics[width=10cm]{Amery.png} +\caption{Amery Glacier} +\label{Amery} +\end{center} +\end{figure} + + +\section{Loading the image in $ARGUS\; ONE$} +To build all the files required by $ISSM$, we use the software $ARGUS\; ONE$. The first step is to import the box coordinates of the radar image in $ARGUS$. To do so, we type a text file that holds the image corners coordinates. There are 5 points since $ARGUS$ requires a closed box: +\begin{verbatim} + ## Name: + ## Icon:0 + # Points Count Value + # X pos Y pos + 1550000.000000 951000.000000 + 550000.000000 554000.000000 + 2260000.000000 554000.000000 + 2260000.000000 951000.000000 + 1550000.000000 951000.000000 +\end{verbatim} +The extension of this file must be $.exp$. In this example, this file is named $Amery\_box.exp$. Then, open $ARGUS$, File/Import Domain Outline.../Text file and select $Amery\_box.exp$. The new box in Argus has exactly the coordinates of $Amery.tif$. Now, the image must be downloaded and placed in the box. Select $map$ in the \emph{Layers} window: +\begin{figure}[H] +\begin{center} +\includegraphics[width=4cm]{argus_map.png} +\end{center} +\end{figure} +\noindent +To download the image: File/Place Image... and select $Amery.tif$. Then, resize the image and move it to fit in the black frame. +\begin{figure}[H] +\begin{center} +\includegraphics[width=13cm]{argus.png} +\end{center} +\end{figure} + +\section{Building the $DomainOutline.exp$ file} + +In the $Layers$ window, click on $Layers$, then $New$ and name it $DomainOutline$, and enter the value $1$ (The value needs to be different than $0$): +\begin{figure}[H] +\begin{center} +\includegraphics[width=7cm]{layers.png} +\end{center} +\end{figure} +\noindent +Then click on $Done$ and select the icon $Contour$ on the left of the window: +\begin{figure}[H] +\begin{center} +\includegraphics[width=1cm]{contour.png} +\end{center} +\end{figure} +\noindent +Select the domain outline of the glacier (it must be a closed contour, do not take sea ice) and double click to end: +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{argus_DO.png} +\end{center} +\end{figure} +\noindent +Then click on File/Export/Export DomainOutline... and save the file $DomainOutline.exp$. + +\section{Building the $Iceshelves.exp$ file} + +Repeat the previous step with a new layer named $Iceshelves$. In this step, one must know the position of the grouding line. The contour must be closed and include the ice shelf as follows: +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{argus_GL.png} +\end{center} +\end{figure} + + +\section{Building the $Islands.exp$ file} + +Skip this step if there is no island in the ice shelf part of the glacier. Repeat the previous step with a new layer named $Islands$. This layer holds several contours that stand for islands in the ice shelf: +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{argus_Islands.png} +\end{center} +\end{figure} + +\section{Building the $Front.exp$ file (needed in Amery.par)} + +Repeat the previous step with a new layer named $Front$. In this step, the contour must be closed and include the ice front as follows: +\begin{figure}[H] +\begin{center} +\includegraphics[width=15cm]{argus_Front.png} +\end{center} +\end{figure} + + +\section{Building the $Amery.par$ parameter file} +Here is just an example of $Amery.par$. Several data are needed (surface, thickness, surface temperature,...). The content of these files is not detailed here and the user will have to change the parts of the parameter file that refer to these data to fit his. +\begin{verbatim} +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Some hardcoded parameters for Amery%%%%%%%%%% + +%some parameterization for this parameter file :) +package='ice'; +modeldatapath='/home/larour/ModelData'; +thicknesspath=[modeldatapath '/BedMap/gridded/thickness']; +firnpath=[modeldatapath '/BroekeFirn1km/firn']; +surfacepath=[modeldatapath '/BamberDEMAntarctica1km/surface_smooth30_lowslope']; +thicknessiceshelvespath=[modeldatapath '/HartmutThicknessAntarctica/HartmutThickness']; +mosaicpath=[modeldatapath '/RignotAntarcticaVelMosaicRampErsAlos/RignotAntVel']; +temperaturepath=[modeldatapath '/GiovinettoZwallyTemperatures92/Giovinetto_Temperatures']; +heatfluxpath=[modeldatapath '/HeatfluxAntarctica/RignotHeatFlux']; + +%material parameters + md.g=9.8; + md.rho_ice=917; + md.rho_water=1023; + di=md.rho_ice/md.rho_water; + md.yts=365*24*3600; + md.heatcapacity=2009; + md.thermalconductivity=2.2; %W/mK + md.beta=9.8*10^-8; + +%Solution parameters + %parallelization + md.cluster='cosmos'; + md.exclusive=1; + md.batch=1; + md.alloc_cleanup=0; + md.np=10; + md.time=60; + md.connectivity=10; + + %solver + md=solversettoasm(md); + + %Set solver + %statics + md.eps_rel=.01; %1 per cent + md.eps_abs=10; %10 m/yr + md.penalty_offset=3; + md.lowmem=1; + md.sparsity=.001; + + %dynamics + md.dt=100*md.yts; %1 year + md.ndt=md.dt*100; + md.artificial_diffusivity=1; + + %control + md.control_type={'drag'}; + md.nsteps=50; + md.tolx=10^-4; + md.maxiter=30*ones(md.nsteps,1); + md.optscal=500*ones(md.nsteps,1); + md.fit=2*ones(md.nsteps,1); %absolute fit + md.meanvel=1000/md.yts; %1000 meters/year + md.epsvel=eps; + md.debug=0; + md.plot=0; + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + + disp(' reading bedmap thicknesses'); + load(thicknesspath); + md.thickness=DataInterp(x_m,y_m,thickness,md.x,md.y,package); clear thickness + + disp(' reading firn layer'); + load(firnpath); + md.firn_layer=DataInterp(x_m,y_m,firn,md.x,md.y,package); clear firn + + disp(' reading Bamber dem'); + load(surfacepath); + md.surface=DataInterp(x_m,y_m,antarctica_surface,md.x,md.y,package); + clear antarctica_surface + + minsurf=1; + pos=find(isnan(md.surface) | (md.surface<=0)); + md.surface(pos)=minsurf; + pos=find(isnan(md.thickness) | (md.thickness<=0)); + md.thickness(pos)=minsurf/(1-di); + md.bed=md.surface-md.thickness; + + disp(' reading ice thickness over ice shelves, from Hartmut'); + load(thicknessiceshelvespath); + iceshelf_thickness=DataInterp(x_m,y_m,hartmut_thickness,md.x,md.y,package); + clear hartmut_thickness + + pos=find((md.gridoniceshelf) & (iceshelf_thickness~=0)); + md.thickness(pos)=iceshelf_thickness(pos); + md.bed(pos)=-di*md.thickness(pos); + md.surface(pos)=(1-di)*md.thickness(pos); + clear iceshelf_thickness + + disp(' reading velocities from Rignot'); + load(mosaicpath); + posting=1000; x1=max(md.x);x0=min(md.x);y1=max(md.y);y0=min(md.y); + i0=round((x0-x_m(1))/posting)-1; i1=round((x1-x_m(1))/posting)+1; + j0=round((y0-y_m(1))/posting)-1; j1=round((y1-y_m(1))/posting)+1; + x_m=x_m(i0:i1); y_m=y_m(j0:j1); + vx=vx(j0:(j1-1),i0:(i1-1)); + vy=vy(j0:(j1-1),i0:(i1-1)); + + md.vx_obs=DataInterp(x_m,y_m,vx,md.x,md.y,package); clear vx + md.vy_obs=DataInterp(x_m,y_m,vy,md.x,md.y,package); clear vy + md.vel_obs=sqrt(md.vx_obs.^2+md.vy_obs.^2); + + %drag md.drag or stress + md.drag_type=2; %0 none 1 plastic 2 viscous + md.drag=300*ones(md.numberofgrids,1); %q=1. + + %Take care of iceshelves: no drag md.drag + pos=find(md.elementoniceshelf); + md.drag(md.elements(pos,:))=0; + md.p=ones(md.numberofelements,1); + md.q=ones(md.numberofelements,1); + + %Load md.temperature from Giovinetto: + disp(' loading temperature'); + load(temperaturepath); + md.temperature=griddata(xt,yt,Ts92,md.x,md.y); clear Ts92 + + %flow law + disp(' creating flow law paramters'); + md.n=3*ones(md.numberofelements,1); + md.B=paterson(md.temperature); + + disp(' creating accumulation rates'); + md.accumulation=ones(md.numberofgrids,1); %1m/a + md.melting=0.1*ones(md.numberofgrids,1); %.1m/a + + %Deal with boundary conditions: + disp(' boundary conditions for diagnostic model'); + gridinsideicefront=ArgusContourToMesh(md.elements,md.x,md.y,expread('Front.exp',1),'node'); + gridonicefront=double(md.gridonboundary & gridinsideicefront); + md.gridondirichlet_diag=zeros(md.numberofgrids,1); + pos=find(md.gridonboundary & ~gridonicefront);md.gridondirichlet_diag(pos)=1; + md.dirichletvalues_diag=zeros(md.numberofgrids,2); + + pos=find(md.gridoniceshelf(md.segments(:,1)) | md.gridoniceshelf(md.segments(:,2))); + if ~isempty(pos), + md.segmentonneumann_diag=md.segments(pos,:); + else + md.segmentonneumann_diag={}; + end + md.neumannvalues_diag=NaN*ones(length(md.segmentonneumann_diag),1); + + disp(' boundary conditions for prognostic model'); + md.gridondirichlet_prog=zeros(md.numberofgrids,1); + md.dirichletvalues_prog=zeros(md.numberofgrids,1); + pos=find(md.gridoniceshelf(md.segments(:,1)) | md.gridoniceshelf(md.segments(:,2))); + if ~isempty(pos), + md.segmentonneumann_prog=md.segments(pos,:); + else + md.segmentonneumann_prog={}; + end + md.neumannvalues_prog=zeros(size(md.segmentonneumann_prog,1),1); + md.neumannvalues_prog(:)=NaN; %free radiation + + pos=find(md.gridoniceshelf(md.segments(:,1)) | md.gridoniceshelf(md.segments(:,2))); + if ~isempty(pos), + md.segmentonneumann_prog2=md.segments(pos,:); + else + md.segmentonneumann_prog2={}; + end + md.neumannvalues_prog2=zeros(size(md.segmentonneumann_prog2,1),1); + md.neumannvalues_prog2(:)=NaN; %free radiation + + disp(' thermal model'); + md.melting=zeros(md.numberofgrids,1); + md.observed_temperature=md.temperature; + disp(' watch out: screwing up thermal parameterization on purpose!'); + md.gridondirichlet_thermal=ones(md.numberofgrids,1); + md.gridondirichlet_thermal(1)=0; + md.dirichletvalues_thermal=md.temperature; + + disp(' reading geothermal flux'); + load(heatfluxpath); + md.geothermalflux=DataInterp(x_m,y_m,heatflux_Antarctica,md.x,md.y,package); + pos=find(md.geothermalflux==0);md.geothermalflux(pos)=80; + md.geothermalflux=md.geothermalflux/1000; %map is given in mW/m^2, we need it in W/m^2 +\end{verbatim} + +\section{Launching a 2d simulation} +Once the four files $DomainOutline.exp$, $GroundingLine.exp$, $Islands.exp$, $Front.exp$ and $Amery.par$ are in the same directory, launch $Matlab$. The first thing to be done is to create a model: +\begin{verbatim} +> md=model; +\end{verbatim} +Then one can mesh the entire domain outline. The refinement is $4000m$ here: +\begin{verbatim} +> md=mesh(md,'DomainOutline.exp',4000); +\end{verbatim} +Load the geography of the model (To determine which part of the model is on the ice shelf, on the ice sheet or on the ice front). If there is no island, the third argument must be $''$. +\begin{verbatim} +> md=geography(md,'Iceshelves.exp','Islands.exp'); +\end{verbatim} +The parameters can now be loaded (the file $Front.exp$ is required for this step) +\begin{verbatim} +> md=parameterize(md,'Amery.par'); +\end{verbatim} +The model is now ready to be extruded (10 layers, and an extrusion exponent of 3): +\begin{verbatim} +> md=extrude(md,10,3); +\end{verbatim} +Last step: assigning the models to the elements (here, MacAyeal on the ice shelf and Pattyn for the grounded ice) +\begin{verbatim} +> md=setelementstype(md,'MacAyeal',md.elementoniceshelf,'fill','Pattyn'); +\end{verbatim} +Then, one can launch a diagnostic: +\begin{verbatim} +> md=solve(md,'diagnostic','ice'); +\end{verbatim} +Once it has ended, one can plot the velovity field +\begin{verbatim} +> plotmodel(md,'data','vel'); +\end{verbatim} + +\section{Control method on the viscosity parameter spatial distribution} +One can optimize the viscosity parameter spatial distribution in order to be closer to an observed velocity field. The first things to do are to plug the observed velocity field (here named $vxobs,vyobs,velobs$) into the model: +\begin{verbatim} +>md.obs_vx=vxobs; +>md.obs_vy=vyobs; +>md.obs_vel=velobs; +\end{verbatim} +Then one can type the following command to setup the model (See control method section \ref{controlmethods} for more details): +\begin{verbatim} +> md.control_type={'B'}; +> md.nsteps=100; +> md.misfit=[2*ones(floor(md.nsteps/2),1); 0*ones(ceil(md.nsteps/2),1)] +> md.optscal=[2*10^7*ones(floor(md.nsteps/2),1); 10^7*ones(ceil(md.nsteps/2),1)]; +> md.mincontrolconstraint=10; +> md.maxcontrolconstraint=10^9; +\end{verbatim} +Then, one can launch a simulation on CIELO (provided that the fields related to parallelization are correctly filled): +\begin{verbatim} +> md=solve(md,'control','cielo'); +\end{verbatim} + +\end{document} Index: /issm/trunk/etc/Make_build_err_usage_targets.mk =================================================================== --- /issm/trunk/etc/Make_build_err_usage_targets.mk (revision 1) +++ /issm/trunk/etc/Make_build_err_usage_targets.mk (revision 1) @@ -0,0 +1,27 @@ + +# Make_build_err_usage_targets.mk + +.PHONY: print_build_info +print_build_info: + @echo 'makeflags = $(MAKEFLAGS)'; + @echo 'version = $(version)'; + @echo 'platform = $(platform)'; + @echo 'compiler = $(compiler)'; + @echo 'supported = $(supported)'; + @echo 'MBIN = $(MBIN)'; + @echo 'MEX = $(MEX)'; + @echo 'MINCLUDE = $(MINCLUDE)'; + @echo 'MOPTS = $(MOPTS)'; + +.PHONY: err +err: ; $(error $(ERR)) + +.PHONY: usage +usage: + @echo make VER=n PLATFORM=xxx COMPILER=xxx MPILAUNCH=xxx + @echo where: + @echo 'VER - target Matlab version; 5, 6, or 7 (defalt=5)' + @echo 'PLATFORM - target platform; sun, osx, linux or windows (default=sun)' + @echo 'COMPILER - either cc, gcc or (if windows) borland' + @echo ' (default cc for sun, gcc for linux, borland for windows)' + @echo 'MPILAUNCH -launching process for cielod server: either mpi, or bsub. Index: /issm/trunk/etc/Make_config.mk =================================================================== --- /issm/trunk/etc/Make_config.mk (revision 1) +++ /issm/trunk/etc/Make_config.mk (revision 1) @@ -0,0 +1,132 @@ + +# +# Make_config.mk +# + +ifeq ($(MAKELEVEL),0) + + # command-line args, defaults: + + ifdef PARALLEL + parallel = $(PARALLEL) + else + parallel = 0 + endif + + ifdef COMPILER + compiler = $(COMPILER) + endif + + ifdef THREAD + thread = $(THREAD) + endif + + supported = no + + # branch accordingly: + ifeq (lin,$(findstring lin,$(ISSM_ARCH))) + supported = yes + ifeq ($(parallel),1) + OBJ_EXT = bo + LIB_EXT = ba + else + OBJ_EXT = o + LIB_EXT = a + endif + endif + + + ifeq ($(compiler),icc) + CC = icc + CFLAGS += -static #needed for any intel compilation. + else + CC = gcc + endif + + #64 bits + ifeq ($(parallel),1) + CFLAGS += -D_LINUX_ -D__GCC4BUILD__ + else + CFLAGS += -D_LINUX_ -D__GCC4BUILD__ -largeArrayDims + endif + + #Matlab + MEX = $(MATLAB_DIR)/bin/mex + MINCLUDE = $(MATLAB_DIR)/extern/include + ifeq (64,$(findstring 64,$(ISSM_ARCH))) + MEX_EXT = mexa64 + endif + CFLAGS += -DMATLAB + CFLAGS += -I$(MINCLUDE) + MOPTS += -f $(ISSM_DIR)/etc/mexopts_v76.sh -V5 -D_LINUX_ + + #Memory manager + ifeq ($(memmgr),1) + CFLAGS += -D_MEMMGR_ + endif + + + #METIS + CFLAGS += -I$(METIS_DIR)/Lib + COMPUTLIBS += -L$(METIS_DIR) -lmetis + + #QHULL + CFLAGS += -I$(QHULL_DIR)/include/qhull + COMPUTLIBS += -L$(QHULL_DIR)/lib -lqhull + + #PETSC + CFLAGS += -I$(PETSC_DIR) -I$(PETSC_DIR)/include/ -I$(PETSC_DIR)/bmake/$(PETSC_ARCH) + CFLAGS += -D_PETSC_ + COMPUTLIBS+= -L$(PETSC_DIR)/lib/$(PETSC_ARCH) -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts + + # activate thread compilation if necessary. + ifeq ($(thread),yes) + CFLAGS += -D_THREAD_ + endif + + #define delivery directory + DELIVERY=$(ISSM_DIR)/bin + +ifeq ($(parallel),1) + + #Undefine matlab if already defined. + CFLAGS+= -UMATLAB + + #Add some strict compiling + CFLAGS += -Werror-implicit-function-declaration -fno-strict-aliasing -funroll-loops + + #Optimization + CFLAGS += -g3 -O3 + + #Parallel flags + CFLAGS += -D_PARALLEL_ + + #MPI + CC=$(MPI_DIR)/bin/mpicc + CFLAGS += -I$(MPI_DIR)/include + COMPUTLIBS += -L$(MPI_DIR)/lib -lfmpich -lmpich -lmpichcxx + + #LAPACK and BLAS + COMPUTLIBS += -L$(LAPACK_DIR) -lflapack + COMPUTLIBS += -L$(BLAS_DIR) -lfblas + + #SLEPC + CFLAGS += -I$(SLEPC_DIR)/include + COMPUTLIBS += -L$(SLEPC_DIR)/lib/$(SLEPC_ARCH) -lslepc + + #SCALAPACK + COMPUTLIBS += -L$(SCALAPACK_DIR) -lscalapack + + #BLACS + COMPUTLIBS += -L$(BLACS_DIR) + + #PLAPACK Definitions. + CFLAGS += -I$(PLAPACK_DIR)/INCLUDE -I$(PETSC_DIR)/src/mat/impls/dense/mpi/plapack/ + COMPUTLIBS += -L$(PLAPACK_DIR)/$(PETSC_ARCH) -lPLAPACK + + #Extra definitions + COMPUTLIBS += -lnsl -lrt -L/usr/X11R6/lib -lX11 + +endif + +endif Index: /issm/trunk/etc/Make_default_rules.mk =================================================================== --- /issm/trunk/etc/Make_default_rules.mk (revision 1) +++ /issm/trunk/etc/Make_default_rules.mk (revision 1) @@ -0,0 +1,41 @@ + +# pattern rules for windows: + +ifeq ($(OBJ_EXT),win) + +%.obj : %.c + $(CC) -c $(CFLAGS) -o $@ $< + +%.sobj : %.c + $(CC) -c $(CFLAGS) -o $@ $< + +%.bobj : %.c + $(CC) -c $(CFLAGS) -o $@ $< +endif + +# pattern rules for linux64: + +ifeq ($(PLATFORM),lin64) + +%.o : %.c + $(CC) -c -fPIC $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.so : %.c + $(CC) -c -fPIC $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.bo : %.c + $(CC) -c -fPIC $(CFLAGS) $(CPPFLAGS) $< -o $@ +endif + +# pattern rules for linux: +ifeq ($(PLATFORM),lin) +%.o : %.c + $(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.so : %.c + $(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.bo : %.c + $(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@ +endif + Index: /issm/trunk/etc/README =================================================================== --- /issm/trunk/etc/README (revision 1) +++ /issm/trunk/etc/README (revision 1) @@ -0,0 +1,25 @@ +This directory holds configuration files needed by various makefiles +across the ICE code to compile "C" code. For this code to compile correctly, +ICE needs to know which type of OS the user is running, and pick up +the correct configuration file. By default, ICE will look for the +config.mk file in the MexConfig directory. If this file does not +point to the correct OS dependent configuration file, the compilation +will fail. + +Users should therefore identify their OS configuration file in the +set of configuration files present in the MexConfig directory ( +ex: config_linux.mk for a 32 bits linux OS, config_linux64.mk +for a 64 bits linux OS, etc ...) and rename this file to config.mk + +For ex, on a linux 32 bits platform, in the MexConfig directory, +find the linux 32 bits configuration file, and type: + +cp ./config_linux32.mk ./config.mk + +Users familiar with symbolic linking can also try: + +ln -s ./config_linux32.mk ./config.mk + +The rest of the files in this directory are related to matlab compiler settings +that have been tweaked for platform compatibility purposes. Users should not +modify them, unless familiar with the 'mex' compiler. Index: /issm/trunk/etc/cielo.rc =================================================================== --- /issm/trunk/etc/cielo.rc (revision 1) +++ /issm/trunk/etc/cielo.rc (revision 1) @@ -0,0 +1,73 @@ +begin + +#This file sets default platform settings used by Cielo. +#This file should always start with begin, and end with end. +#Comments start with #. + +#The syntax to add a computational server is the following: +#server_name=foobar +#server_ip=127.0.0.1 +#server_port=1025 +#server_tunneling=yes:1025 + +#Just uncomment the 4 lines above if you want to add a server +#with hostname foobar, ip 127.0.0.1, listening on port 1025 and +#using ssh tunneling on local port 1025. +#The server_name can be of any form, provided it's a string. Using +#the network hostname is good practice. +#The server_ip needs to be of the format a.b.c.d where a,b,c,d are +#numbers from 0 to 255. +#The server_port is any valid port number on the current platform (usually, +#using ports 1025 and higher is good practice, as those ports +#are dedicated for users). +#server_tunneling can be either yes, or no. It sets the ssh tunneling option +#for secure connections. If set to yes, it needs to be followed by the +#local port that is ssh tunneled to the server port. Don't forget the semi colon. +#Final remark on including server settings: do not include spaces +#between a field, the '=' sign and its value. Do not also include trailing spaces +#at the end of a line. + +server_name=cosmos +server_ip=128.149.134.43 +server_port=1025 +server_tunneling=yes:1025 +server_codepath=/home/larour/tier2_ice/server_delivery +server_executionpath=/scratch/larour/Testing/AGU_2008 + +server_name=mustang +server_ip=128.149.26.108 +server_port=1030 +server_tunneling=no +server_codepath=/proj/ice/larour/Ice/tier2_ice/server_delivery +server_executionpath=/proj/ice/larour/Testing_ice/Execution + +server_name=metro +server_ip=128.149.26.85 +server_port=1025 +server_tunneling=no +server_codepath=/home/larour/Ice/tier2_ice/server_delivery +server_executionpath=/home/larour/Testing/Execution + +server_name=wilkes +server_ip=137.79.160.187 +server_port=1025 +server_tunneling=no +server_codepath=/u/wilkes-r1b/larour/Ice/ice1.proto/bin +server_executionpath=/home/larour/Testing/Execution + +server_name=astrid +server_ip=137.79.160.65 +server_port=1025 +server_tunneling=no +server_codepath=/u/astrid1/larour/issm-1.0/bin +server_executionpath=/home/larour/Testing/Execution + +server_name=gemini +server_ip=128.149.134.21 +server_port=1025 +server_tunneling=no +server_codepath=/home/larour/issm/bin +server_executionpath=/home/larour/Testing/Execution + + +end Index: /issm/trunk/etc/config.mk =================================================================== --- /issm/trunk/etc/config.mk (revision 1) +++ /issm/trunk/etc/config.mk (revision 1) @@ -0,0 +1,1 @@ +link config_linux64.mk Index: /issm/trunk/etc/config_linux32.mk =================================================================== --- /issm/trunk/etc/config_linux32.mk (revision 1) +++ /issm/trunk/etc/config_linux32.mk (revision 1) @@ -0,0 +1,25 @@ +# +# Make_config.mk +# + +# run only if top-level make: +ifeq ($(MAKELEVEL),0) + +#Update the following locations +ICEROOT=/proj/tpfimos/larour/Ice/ice1 +MATLABROOT=/usr/local/matlab +MEX_EXT= mexglx + +OBJ_EXT = o +LIB_EXT = a +MROOT = $(MATLABROOT) +MBIN = $(MROOT)/bin +MOPTS += -f $(ICEROOT)/etc/mexopts_v704.sh -V5 +CC = gcc +CFLAGS += -D_LINUX_ -O3 +MEX = $(MBIN)/mex +MINCLUDE = $(MROOT)/extern/include +CFLAGS += -I$(MINCLUDE) -DMATLAB + +endif + Index: /issm/trunk/etc/config_linux64.mk =================================================================== --- /issm/trunk/etc/config_linux64.mk (revision 1) +++ /issm/trunk/etc/config_linux64.mk (revision 1) @@ -0,0 +1,27 @@ +# +# Make_config.mk +# +#Update the following settings + +ifeq ($(MAKELEVEL),0) + + + #Extensions + MEX_EXT = mexa64 + OBJ_EXT = o + LIB_EXT = a + + #Matlab + MROOT = $(MATLAB_DIR) + MBIN = $(MROOT)/bin + MEX = $(MBIN)/mex + MINCLUDE = $(MROOT)/extern/include + MOPTS += -f $(ISSM_DIR)/etc/mexopts_v704.sh -V5 -DMATLAB -D_HAVE_MATLAB_ + + #C + CC = gcc + CFLAGS += -D_LINUX_ -fPIC -I$(MINCLUDE) -DMATLAB -D_HAVE_MATLAB_ -std=c99 -O3 -I/usr/X11R6/include -L/usr/X11R6/lib -I$(ISSM_DIR)/packages/triangle/install -I$(ISSM_DIR)/packages/metis/install/Lib + + #Delivery location + DELIVERY = $(ISSM_DIR)/bin +endif Index: /issm/trunk/etc/config_mac.mk =================================================================== --- /issm/trunk/etc/config_mac.mk (revision 1) +++ /issm/trunk/etc/config_mac.mk (revision 1) @@ -0,0 +1,25 @@ +# +# Make_config.mk +# + +# run only if top-level make: +ifeq ($(MAKELEVEL),0) + +#Update the following locations +ICEROOT=/Users/larour/JPL/ice1 +MATLABROOT=/Applications/MATLAB_R2008a/ +MEX_EXT= mexmaci + +OBJ_EXT = o +LIB_EXT = a +MROOT = $(MATLABROOT) +MBIN = $(MROOT)/bin +MOPTS += -f $(ICEROOT)/etc/mexopts_mac.sh +CC = gcc +CFLAGS += -D_LINUX_ -O3 +MEX = $(MBIN)/mex +MINCLUDE = $(MROOT)/extern/include +CFLAGS += -I$(MINCLUDE) -DMATLAB + +endif + Index: sm/trunk/etc/environment.csh =================================================================== --- /issm/trunk/etc/environment.csh (revision 28275) +++ (revision ) @@ -1,247 +1,0 @@ -# Modifies path-related envrionment variables based on which external packages -# have been installed. -# -# ISSM_DIR and ISSM_ARCH should have been defined already in your shell -# settings file (i.e. .bashrc, .cshrc). -# -# TODO: -# - Condition all path modifications on existence of external package 'install' -# directory -# - -# Silence `: no match` -set nonomatch=1 - -setenv PATH "{$PATH}:{$ISSM_DIR}/aux-config" -setenv PATH "{$PATH}:{$ISSM_DIR}/scripts" - -set ISSM_EXT_DIR="{$ISSM_DIR}/externalpackages" # Redefine this constant if externalpackages are installed to a different directory - -######################### -# Command-line utilities -######################### -set SSH_ROOT="{$ISSM_EXT_DIR}/ssh" -if ( -d {$SSH_ROOT} ) then - setenv PATH "{$PATH}:{$SSH_ROOT}" -endif - -############################# -# Build systems -############################# -set AUTOTOOLS_ROOT="{$ISSM_EXT_DIR}/autotools/install" -setenv PATH "{$AUTOTOOLS_ROOT}/bin:{$PATH}" - -set CMAKE_ROOT="{$ISSM_EXT_DIR}/cmake/install" -setenv PATH "{$CMAKE_ROOT}/bin:{$PATH}" - -############################# -# Libraries / binaries -############################# -set MPI_ROOT="{$ISSM_EXT_DIR}/mpich/install" -if ( -d {$MPI_ROOT} ) then - setenv MPI_DIR {$MPI_ROOT} - setenv MPI_HOME {$MPI_ROOT} # Used in installation of Dakota - setenv MPI_INC_DIR {$MPI_ROOT}/include - setenv PATH "{$MPI_ROOT}/bin:{$PATH}" - setenv CPATH "{$MPI_ROOT}/include:{$CPATH}" - setenv LD_LIBRARY_PATH "{$LD_LIBRARY_PATH}:{$MPI_ROOT}/lib" -endif - -# NOTE: Check *must* come before PETSc as we prefer packages installed via -# PETSc -# -set ZLIB_ROOT="{$ISSM_EXT_DIR}/zlib/install" -if ( -d {$ZLIB_ROOT} ) then - setenv ZLIB_ROOT {$ZLIB_ROOT} # Used in installation of NetCDF, GDAL, GMT - setenv LD_LIBRARY_PATH "{$LD_LIBRARY_PATH}:{$LD_LIBRARY_PATH}/lib" -endif - -set PETSC_ROOT="{$ISSM_EXT_DIR}/petsc/install" -if ( -d {$PETSC_ROOT} ) then - setenv PETSC_ROOT {$PETSC_ROOT} - setenv LD_LIBRARY_PATH {$PETSC_ROOT}/lib:{$LD_LIBRARY_PATH} - - # In case we have installed certain external packages via PETSc - # - - # BLAS - if ( `find {$PETSC_ROOT}/lib -name libblas.*` != "" || `find {$PETSC_ROOT}/lib -name libfblas.*` != "" ) then - setenv BLAS_ROOT "{$PETSC_ROOT}" # Used in installation of Dakota, GMT - endif - - # HDF5 - if ( `find {$PETSC_ROOT}/lib -name libhdf5.*` != "" ) then - setenv HDF5_ROOT "{$PETSC_ROOT}" # Used in installation of NetCDF, GDAL - setenv CPATH {$CPATH}:{$PETSC_ROOT}/include - setenv LIBRARY_PATH {$LIBRARY_PATH}:{$PETSC_ROOT}/lib - setenv DYLD_LIBRARY_PATH {$DYLD_LIBRARY_PATH}:{$PETSC_ROOT}/lib - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$PETSC_ROOT}/lib - endif - - # LAPACK - if ( `find {$PETSC_ROOT}/lib -name liblapack.*` != "" || `find {$PETSC_ROOT}/lib -name libflapack.*` != "" ) then - setenv LAPACK_ROOT "{$PETSC_ROOT}" # Used in installation of Dakota, GMT - endif - - # METIS - if ( `find {$PETSC_ROOT}/lib -name libmetis.*` != "" ) then - setenv METIS_ROOT "{$PETSC_ROOT}" # Used in installation of Gmsh - endif - - # MPICH - if ( -f "{$PETSC_ROOT}/bin/mpiexec" ) then - set MPI_ROOT={$PETSC_ROOT} - setenv MPI_DIR {$MPI_ROOT} - setenv MPI_HOME {$MPI_ROOT} # Used in installation of Dakota - setenv MPI_INC_DIR {$MPI_ROOT}/include - setenv PATH {$MPI_ROOT}/bin:{$PATH} - setenv CPATH {$MPI_ROOT}/include:{$CPATH} - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$MPI_ROOT}/lib - endif - - # ZLIB - if ( `find {$PETSC_ROOT}/lib -name libz.*` != "" ) then - setenv ZLIB_ROOT "{$PETSC_ROOT}" # Used in installation of NetCDF, GDAL - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$PETSC_ROOT}/lib - endif -endif - -set SCOTCH_ROOT="{$ISSM_EXT_DIR}/scotch/install" -if ( -d {$SCOTCH_ROOT} ) then - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$SCOTCH_ROOT}/lib -endif - -set SLEPC_ROOT="{$ISSM_EXT_DIR}/slepc/install" -if ( -d {$SLEPC_ROOT} ) then - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$SLEPC_ROOT}/lib -endif - -set TAO_ROOT="{$ISSM_EXT_DIR}/tao/install" -if ( -d {$TAO_ROOT} ) then - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$TAO_ROOT}/lib -endif - -set DAKOTA_ROOT="{$ISSM_EXT_DIR}/dakota/install" -if ( -d {$DAKOTA_ROOT} ) then - setenv PATH {$PATH}:{$DAKOTA_ROOT}/bin - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$DAKOTA_ROOT}/lib - setenv DYLD_LIBRARY_PATH {$DAKOTA_ROOT}/lib:{$DYLD_LIBRARY_PATH} -endif - -set MERCURIAL_ROOT="{$ISSM_EXT_DIR}/mercurial/install" -if ( -d {$MERCURIAL_ROOT} ) then - setenv PYTHONPATH {$PYTHONPATH}:{$MERCURIAL_ROOT}/mercurial/pure - setenv PATH {$PATH}:{$MERCURIAL_ROOT} -endif - -set BOOST_ROOT="{$ISSM_EXT_DIR}/boost/install" -if ( -d {$BOOST_ROOT} ) then - setenv BOOST_ROOT {$BOOST_ROOT} # Used in installation of Dakota - setenv BOOST_DIR {$BOOST_ROOT} - setenv BOOSTROOT {$BOOST_ROOT} - setenv LIBRARY_PATH {$BOOST_ROOT}/lib:{$LIBRARY_PATH} - setenv LD_LIBRARY_PATH {$BOOST_ROOT}/lib:{$LD_LIBRARY_PATH} - setenv DYLD_LIBRARY_PATH {$BOOST_ROOT}/lib:{$DYLD_LIBRARY_PATH} - setenv PATH {$BOOST_ROOT}/bin:{$PATH} -endif - -set GSL_ROOT="{$ISSM_EXT_DIR}/gsl/install" -if ( -d {$GSL_ROOT} ) then - setenv GSL_HOME {$GSL_ROOT} # Used in installation of Dakota - setenv GSL_ROOT {$GSL_ROOT} - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$GSL_ROOT}/lib - setenv DYLD_LIBRARY_PATH {$GSL_ROOT}/lib:{$DYLD_LIBRARY_PATH} -endif - -set NETCDF_ROOT="{$ISSM_EXT_DIR}/netcdf/install" -if ( -d {$NETCDF_ROOT} ) then - setenv NETCDF_ROOT "{$NETCDF_ROOT}" # Used in installation of GDAL, GMT - setenv PATH {$PATH}:{$NETCDF_ROOT}/bin - setenv CPATH {$CPATH}:{$NETCDF_ROOT}/include - setenv LIBRARY_PATH {$LIBRARY_PATH}:{$NETCDF_ROOT}/lib - setenv DYLD_LIBRARY_PATH {$DYLD_LIBRARY_PATH}:{$NETCDF_ROOT}/lib - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$NETCDF_ROOT}/lib -endif - -set CURL_ROOT="{$ISSM_EXT_DIR}/curl/install" -if ( -d {$CURL_ROOT} ) then - setenv CURL_ROOT "{$CURL_ROOT}" # Used in installation of NetCDF, GDAL, GMT - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$CURL_ROOT}/lib - setenv DYLD_LIBRARY_PATH {$DYLD_LIBRARY_PATH}:{$CURL_ROOT}/lib - setenv PATH {$PATH}:{$CURL_ROOT}/bin -endif - -set HDF5_ROOT="{$ISSM_EXT_DIR}/hdf5/install" -if ( -d {$HDF5_ROOT} ) then - setenv HDF5_ROOT "{$HDF5_ROOT}" # Used in installation of NetCDF, GDAL - setenv CPATH {$CPATH}:{$HDF5_ROOT}/include - setenv LIBRARY_PATH {$LIBRARY_PATH}:{$HDF5_ROOT}/lib - setenv DYLD_LIBRARY_PATH {$DYLD_LIBRARY_PATH}:{$HDF5_ROOT}/lib - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$HDF5_ROOT}/lib -endif - -set SQLITE_ROOT="{$ISSM_EXT_DIR}/sqlite/install" -if ( -d {$SQLITE_ROOT} ) then - setenv PATH {$PATH}:{$SQLITE_ROOT}/bin - setenv LIBRARY_PATH {$LIBRARY_PATH}:{$SQLITE_ROOT}/lib - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$SQLITE_ROOT}/lib -endif - -set PROJ_ROOT="{$ISSM_EXT_DIR}/proj/install" -if ( -d {$PROJ_ROOT} ) then - setenv PROJ_ROOT "${PROJ_ROOT}" # Used in installation of GDAL - setenv DYLD_LIBRARY_PATH {$DYLD_LIBRARY_PATH}:{$PROJ_ROOT}/lib - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$PROJ_ROOT}/lib -endif - -set GDAL_ROOT="{$ISSM_EXT_DIR}/gdal/install" -if ( -d {$GDAL_ROOT} ) then - setenv GDAL_ROOT "{$GDAL_ROOT}" # Used in installation of GMT - setenv PATH {$GDAL_ROOT}/bin:{$PATH} - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$GDAL_ROOT}/lib -endif - -set GSHHG_ROOT="{$ISSM_EXT_DIR}/gshhg/install" -if ( -d {$GSHHG_ROOT} ) then - setenv GSHHG_ROOT "{$GSHHG_ROOT}" # Used in installation of GMT -endif - -set GMT_ROOT="{$ISSM_EXT_DIR}/gmt/install" -if ( -d {$GMT_ROOT} ) then - setenv PATH {$GMT_ROOT}/bin:{$PATH} - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$GMT_ROOT}/lib - setenv DYLD_LIBRARY_PATH {$DYLD_LIBRARY_PATH}:{$GMT_ROOT}/lib -endif - -set GMSH_ROOT="{$ISSM_EXT_DIR}/gmsh/install" -if ( -d {$GMSH_ROOT} ) then - setenv PATH {$GMSH_ROOT}/bin:{$PATH} - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$GMSH_ROOT}/lib - setenv DYLD_LIBRARY_PATH {$DYLD_LIBRARY_PATH}:{$GMSH_ROOT}/lib -endif - -set TRIANGLE_ROOT="{$ISSM_EXT_DIR}/triangle/install" -if ( -d {$TRIANGLE_ROOT} ) then - setenv LD_LIBRARY_PATH {$LD_LIBRARY_PATH}:{$TRIANGLE_ROOT}/lib - setenv DYLD_LIBRARY_PATH {$DYLD_LIBRARY_PATH}:{$TRIANGLE_ROOT}/lib -endif - -set YAMS_ROOT="{$ISSM_EXT_DIR}/yams/install" -if ( -d {$YAMS_ROOT} ) then - setenv PATH {$PATH}:{$YAMS_ROOT} -endif - -set VALGRIND_ROOT="{$ISSM_EXT_DIR}/valgrind/install" -if ( -d {$VALGRIND_ROOT} ) then - setenv PATH {$VALGRIND_ROOT}/bin:{$PATH} -endif - -set DOXYGEN_ROOT="{$ISSM_EXT_DIR}/doxygen/install" -if ( -d {$DOXYGEN_ROOT} ) then - setenv PATH {$DOXYGEN_ROOT}/bin:{$PATH} -endif - -set SHELL2JUNIT_ROOT="{$ISSM_EXT_DIR}/shell2junit/install" -if ( -d {$SHELL2JUNIT_ROOT} ) then - setenv PATH {$PATH}:{$SHELL2JUNIT_ROOT}/install -endif Index: /issm/trunk/etc/environment.sh =================================================================== --- /issm/trunk/etc/environment.sh (revision 28275) +++ /issm/trunk/etc/environment.sh (revision 1) @@ -1,688 +1,77 @@ -# Modifies path-related environment variables based on which external packages -# have been installed. -# -# ISSM_DIR and ISSM_ARCH should have been defined already in your shell -# settings file (i.e. .bashrc, .cshrc). -# -# TODO: -# - Condition all path modifications on existence of external package 'install' -# directory -# +#ISSM_DIR and ISSM_ARCH should have been defined already in your shell settings file (.bashrc, .cshrc, etc ...) -if [[ -n "$ZSH_VERSION" ]]; then - # Silence `zsh: no matches found: ` - setopt +o nomatch 1> /dev/null 2>&1 -fi +source $ISSM_DIR/etc/environment_variables -## Functions -# -c_include_path_append(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${C_INCLUDE_PATH}" ]; then - export C_INCLUDE_PATH="${1}" - elif [[ ":${C_INCLUDE_PATH}:" != *":${1}:"* ]]; then - export C_INCLUDE_PATH="${C_INCLUDE_PATH}:${1}" - fi - fi -} #}}} -c_include_path_prepend(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${C_INCLUDE_PATH}" ]; then - export C_INCLUDE_PATH="${1}" - elif [[ ":${C_INCLUDE_PATH}:" != *":${1}:"* ]]; then - export C_INCLUDE_PATH="${1}:${C_INCLUDE_PATH}" - fi - fi -} #}}} +#MPI +export MPI_DIR +PATH="$PATH:$MPI_DIR/bin" +export LD_LIBRARY_PATH="$MPI_DIR/lib" +export LD_RUN_PATH="$MPI_DIR/lib" +export MANPATH="$MANPATH:$MPI_DIR/man" -cpath_append(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${CPATH}" ]; then - export CPATH="${1}" - elif [[ ":${CPATH}:" != *":${1}:"* ]]; then - export CPATH="${CPATH}:${1}" - fi - fi -} #}}} -cpath_prepend(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${CPATH}" ]; then - export CPATH="${1}" - elif [[ ":${CPATH}:" != *":${1}:"* ]]; then - export CPATH="${1}:${CPATH}" - fi - fi -} #}}} +#PETSC +export PETSC_DIR +export PETSC_ARCH +export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$PETSC_DIR/lib/$PETSC_ARCH" +export LD_RUN_PATH="$LD_RUN_PATH:$PETSC_DIR/lib/$PETSC_ARCH" -cplus_include_path_append(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${CPLUS_INCLUDE_PATH}" ]; then - export CPLUS_INCLUDE_PATH="${1}" - elif [[ ":${CPLUS_INCLUDE_PATH}:" != *":${1}:"* ]]; then - export CPLUS_INCLUDE_PATH="${CPLUS_INCLUDE_PATH}:${1}" - fi - fi -} #}}} -cplus_include_path_prepend(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${CPLUS_INCLUDE_PATH}" ]; then - export CPLUS_INCLUDE_PATH="${1}" - elif [[ ":${CPLUS_INCLUDE_PATH}:" != *":${1}:"* ]]; then - export CPLUS_INCLUDE_PATH="${1}:${CPLUS_INCLUDE_PATH}" - fi - fi -} #}}} +#SLEPC +export SLEPC_DIR +export SLEPC_ARCH +export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$SLEPC_DIR/lib/$PETSC_ARCH" +export LD_RUN_PATH="$LD_RUN_PATH:$SLEPC_DIR/lib/$PETSC_ARCH" -dyld_library_path_append(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${DYLD_LIBRARY_PATH}" ]; then - export DYLD_LIBRARY_PATH="${1}" - elif [[ ":${DYLD_LIBRARY_PATH}:" != *":${1}:"* ]]; then - export DYLD_LIBRARY_PATH="${DYLD_LIBRARY_PATH}:${1}" - fi - if [ -z "${LD_RUN_PATH}" ]; then - export LD_RUN_PATH=$1 - elif [[ ":${LD_RUN_PATH}:" != *":${1}:"* ]]; then - export LD_RUN_PATH="${LD_RUN_PATH}:${1}" - fi - fi -} #}}} -dyld_library_path_prepend(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${DYLD_LIBRARY_PATH}" ]; then - export DYLD_LIBRARY_PATH="${1}" - elif [[ ":${DYLD_LIBRARY_PATH}:" != *":${1}:"* ]]; then - export DYLD_LIBRARY_PATH="${1}:${DYLD_LIBRARY_PATH}" - fi - if [ -z "${LD_RUN_PATH}" ]; then - export LD_RUN_PATH="${1}" - elif [[ ":${LD_RUN_PATH}:" != *":${1}:"* ]]; then - export LD_RUN_PATH="${1}:${LD_RUN_PATH}" - fi - fi -} #}}} +#Dakota +export DAKOTA_DIR +PATH="$PATH:$DAKOTA_DIR/bin" +export MANPATH="$MANPATH:$MPI_DIR/man:$DAKOTA_DIR/docs/man:$DAKOTA_DIR/docs/man-ref" -ld_library_path_append(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${LD_LIBRARY_PATH}" ]; then - export LD_LIBRARY_PATH="${1}" - elif [[ ":${LD_LIBRARY_PATH}:" != *":${1}:"* ]]; then - export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${1}" - fi - if [ -z "${LD_RUN_PATH}" ]; then - export LD_RUN_PATH="${1}" - elif [[ ":${LD_RUN_PATH}:" != *":$1:"* ]]; then - export LD_RUN_PATH="${LD_RUN_PATH}:${1}" - fi - fi -} #}}} -ld_library_path_prepend(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${LD_LIBRARY_PATH}" ]; then - export LD_LIBRARY_PATH="${1}" - elif [[ ":${LD_LIBRARY_PATH}:" != *":${1}:"* ]]; then - export LD_LIBRARY_PATH="${1}:${LD_LIBRARY_PATH}" - fi - if [ -z "${LD_RUN_PATH}" ]; then - export LD_RUN_PATH="${1}" - elif [[ ":${LD_RUN_PATH}:" != *":${1}:"* ]]; then - export LD_RUN_PATH="${1}:${LD_RUN_PATH}" - fi - fi -} #}}} +#Qhull +export QHULL_DIR +export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$QHULL_DIR/lib" +export LD_RUN_PATH="$LD_RUN_PATH:$QHULL_DIR/lib" -library_path_append(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${LIBRARY_PATH}" ]; then - export LIBRARY_PATH="${1}" - elif [[ ":${LIBRARY_PATH}:" != *":$1:"* ]]; then - export LIBRARY_PATH="${LIBRARY_PATH}:${1}" - fi - fi -} #}}} -library_path_prepend(){ #{{{ - if [ -d "${1}" ]; then - if [ -z "${LIBRARY_PATH}" ]; then - export LIBRARY_PATH="${1}" - elif [[ ":${LIBRARY_PATH}:" != *":$1:"* ]]; then - export LIBRARY_PATH="${1}:${LIBRARY_PATH}" - fi - fi -} #}}} +#Doxygen +export DOXYGEN_DIR +MANPATH="$MANPATH:$DOXYGEN_DIR/man" +PATH="$PATH:$DOXYGEN_DIR/bin" -path_append(){ #{{{ - if [ -d "${1}" ] && [[ ":${PATH}:" != *":${1}:"* ]]; then - PATH_IN="${1}" - if [[ "${ISSM_ARCH}" == "cygwin-intel" ]]; then - PATH_IN=`cygpath -u "${1}"` - fi - export PATH="${PATH}:${PATH_IN}" - fi -} #}}} -path_prepend(){ #{{{ - if [ -d "${1}" ] && [[ ":${PATH}:" != *":${1}:"* ]]; then - PATH_IN="${1}" - if [[ "${ISSM_ARCH}" == "cygwin-intel" ]]; then - PATH_IN=`cygpath -u "${1}"` - fi - export PATH="${PATH_IN}:${PATH}" - fi -} #}}} +#MTOC +export MTOC_DIR +PATH="$PATH:$MTOC_DIR" -path_append "${ISSM_DIR}/aux-config" -path_append "${ISSM_DIR}/scripts" +#MATLAB +export MATLAB_DIR +export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$MATLAB_DIR/bin/glnxa64" +export LD_RUN_PATH="$LD_RUN_PATH:$MATLAB_DIR/bin/glnxa64" +PATH="$PATH:$MATLAB_DIR/bin" -# Default path to external packages. Redefine this constant if they are -# installed to a different directory. Alternatively, export it on the command -# line or in a profile initialization file (that is why we check here if it is -# set already). -# -if [ -z "${ISSM_EXT_DIR+x}" ]; then - export ISSM_EXT_DIR="${ISSM_DIR}/externalpackages" -fi +#TRIANGLE +export TRIANGLE_DIR -####################### -# OS-specific handling -####################### +#METIS +export METIS_DIR + +#BLAS +export BLAS_DIR -MINGW=0 -if [[ $(uname -s) == MINGW* ]]; then - MINGW=1 - MSMPI_ROOT="${ISSM_EXT_DIR}/msmpi/install" - if [ -d "${MSMPI_ROOT}" ]; then - export MSMPI_ROOT # Used in installation of ParMETIS, ScaLAPACK - cpath_prepend "${MSMPI_ROOT}/include" - library_path_prepend "${MSMPI_ROOT}/lib" - fi +#LAPACK +export LAPACK_DIR - MPIEXEC_DIR=$(cygpath -u $(cygpath -ms "/c/Program Files/Microsoft MPI/Bin")) - if [ -d "${MPIEXEC_DIR}" ]; then - export MPIEXEC_DIR - path_append "${MPIEXEC_DIR}" - fi +#SCALAPACK +export SCALAPACK_DIR - path_prepend "${ISSM_DIR}/bin" # Allows dynamic loader to find DLLs -fi +#PLAPACK +export PLAPACK_DIR -# Windows compilers -if [[ "${ISSM_ARCH}" == "cygwin-intel" ]]; then - source ${ISSM_DIR}/externalpackages/windows/windows_environment.sh -fi +#BLACS +export BLACS_DIR -######################### -# Command-line utilities -######################### -SSH_ROOT="${ISSM_EXT_DIR}/ssh" -if [ -d "${SSH_ROOT}" ]; then - path_append "${SSH_ROOT}" -fi +#SOWING +export SOWING_DIR +PATH="$PATH:$SOWING_DIR/bin" +export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$SOWING_DIR/lib" +export LD_RUN_PATH="$LD_RUN_PATH:$SOWING_DIR/lib" +export MANPATH="$MANPATH:$SOWING_DIR/man" -SVN_ROOT="${ISSM_EXT_DIR}/svn/install" -if [ -d "${SVN_ROOT}" ]; then - path_prepend "${SVN_ROOT}/bin" - ld_library_path_append "${SVN_ROOT}/lib" -fi -GIT_ROOT="${ISSM_EXT_DIR}/git/install" -if [ -d "${GIT_ROOT}" ]; then - path_prepend "${GIT_ROOT}/bin" -fi - -############################# -# Compilers / runtime / SDKs -############################# -export ANDROID_DIR="${ISSM_EXT_DIR}/android" - -export ANDROID_NDK_DIR="$ANDROID_DIR/android-ndk/install" -path_append "$ANDROID_NDK_DIR/arm-linux-android-install/bin" - -export ANDROID_SDK_ROOT="$ANDROID_DIR/android-sdk/install" -path_append "$ANDROID_SDK_ROOT/" - -EMSCRIPTEN_ROOT="${ISSM_EXT_DIR}/emscripten/install" -if [ -d ${EMSCRIPTEN_ROOT} ]; then - export EMSCRIPTEN_ROOT # Used in JavaScript build in installation of GSL, Triangle -fi - -JVM_ROOT="/usr/local/gcc/4.3.2/lib64/gcj-4.3.2-9/" -ld_library_path_append "${JVM_ROOT}" - -############################# -# IDEs -############################# -ECLIPSE_ROOT="${ISSM_EXT_DIR}/eclipse/install" -path_append "${ECLIPSE_ROOT}" - -############################# -# Build systems -############################# -AUTOTOOLS_ROOT="${ISSM_EXT_DIR}/autotools/install" -path_prepend "${AUTOTOOLS_ROOT}/bin" - -CMAKE_ROOT="${ISSM_EXT_DIR}/cmake/install" -path_prepend "${CMAKE_ROOT}/bin" - -GMAKE_ROOT="${ISSM_EXT_DIR}/gmake/install" -path_prepend "${GMAKE_ROOT}/bin" - -############################# -# Packagers -############################# -PACKAGEMAKER_ROOT="${ISSM_EXT_DIR}/packagemaker/install" -path_append "${PACKAGEMAKER_ROOT}" - -############################# -# Libraries / binaries -############################# -MPI_ROOT_TEMP="${ISSM_EXT_DIR}/mpich/install" -if [ -d "${MPI_ROOT_TEMP}" ]; then - export MPI_DIR=${MPI_ROOT_TEMP} - export MPI_HOME=${MPI_ROOT_TEMP} # Used in installation of Dakota - export MPI_INC_DIR="${MPI_ROOT_TEMP}/include" - path_prepend "${MPI_ROOT_TEMP}/bin" - cpath_prepend "${MPI_ROOT_TEMP}/include" - ld_library_path_append "${MPI_ROOT_TEMP}/lib" -fi - -# NOTE: The following checks *must* come before PETSc as we prefer packages -# installed via PETSc -# -BLAS_ROOT="${ISSM_EXT_DIR}/blas/install" -if [ -d "${BLAS_ROOT}" ]; then - export BLAS_ROOT # Used in installation of LAPACK, ScaLAPACK, PETSc - library_path_append "${BLAS_ROOT}/lib" - ld_library_path_append "${BLAS_ROOT}/lib" - - if [[ ${MINGW} -eq 1 ]]; then - path_append "${BLAS_ROOT}/lib" # Allows dynamic loader to find DLLs - fi -fi - -HDF5_ROOT="${ISSM_EXT_DIR}/hdf5/install" -if [ -d "${HDF5_ROOT}" ]; then - export HDF5_ROOT # Used in installation of NetCDF, GDAL - cpath_append "${HDF5_ROOT}/include" - library_path_append "${HDF5_ROOT}/lib" - dyld_library_path_append "${HDF5_ROOT}/lib" - ld_library_path_append "${HDF5_ROOT}/lib" -fi - -LAPACK_ROOT="${ISSM_EXT_DIR}/lapack/install" -if [ -d "${LAPACK_ROOT}" ]; then - export LAPACK_ROOT # Used in installation of ScaLAPACK, MUMPS, PETSc - library_path_append "${LAPACK_ROOT}/lib" - ld_library_path_append "${LAPACK_ROOT}/lib" - - if [[ ${MINGW} -eq 1 ]]; then - path_append "${LAPACK_ROOT}/lib" # Allows dynamic loader to find DLLs - fi - - if ls ${LAPACK_ROOT}/lib/libblas.* 1> /dev/null 2>&1; then - export BLAS_ROOT="${LAPACK_ROOT}" - fi -fi - -METIS_ROOT="${ISSM_EXT_DIR}/metis/install" -if [ -d "${METIS_ROOT}" ]; then - export METIS_ROOT # Used in installation of ParMETIS, Gmsh, PETSc - library_path_prepend "${METIS_ROOT}/lib" - ld_library_path_prepend "${METIS_ROOT}/lib" - - if [[ ${MINGW} -eq 1 ]]; then - path_append "${METIS_ROOT}/lib" # Allows dynamic loader to find DLLs - fi -fi - -MUMPS_ROOT="${ISSM_EXT_DIR}/mumps/install" -if [ -d "${MUMPS_ROOT}" ]; then - export MUMPS_ROOT # Used in installation of PETSc - library_path_append "${MUMPS_ROOT}/lib" - - if [[ ${MINGW} -eq 1 ]]; then - path_append "${MUMPS_ROOT}/lib" # Allows dynamic loader to find DLLs - fi -fi - -PARMETIS_ROOT="${ISSM_EXT_DIR}/parmetis/install" -if [ -d "${PARMETIS_ROOT}" ]; then - export PARMETIS_ROOT # Used in installation of MUMPS, PETSc - library_path_prepend "${PARMETIS_ROOT}/lib" - ld_library_path_prepend "${PARMETIS_ROOT}/lib" - - if [[ ${MINGW} -eq 1 ]]; then - path_append "${PARMETIS_ROOT}/lib" # Allows dynamic loader to find DLLs - fi -fi - -QD_ROOT="${ISSM_EXT_DIR}/qd/install" -if [ -d "${QD_ROOT}" ]; then - export QD_ROOT # Used in installation of MPLAPACK - library_path_prepend "${QD_ROOT}/lib" - ld_library_path_prepend "${QD_ROOT}/lib" -fi - -SCALAPACK_ROOT="${ISSM_EXT_DIR}/scalapack/install" -if [ -d "${SCALAPACK_ROOT}" ]; then - export SCALAPACK_ROOT # Used in installation of MUMPS, PETSc - library_path_append "${SCALAPACK_ROOT}/lib" - - if [[ ${MINGW} -eq 1 ]]; then - path_append "${SCALAPACK_ROOT}/lib" # Allows dynamic loader to find DLLs - fi -fi - -ZLIB_ROOT="${ISSM_EXT_DIR}/zlib/install" -if [ -d "${ZLIB_ROOT}" ]; then - export ZLIB_ROOT # Used in installation of NetCDF, GDAL, GMT - ld_library_path_append "${ZLIB_ROOT}/lib" -fi - -PETSC_ROOT="${ISSM_EXT_DIR}/petsc/install" -if [ -d "${PETSC_ROOT}" ]; then - export PETSC_ROOT # Used in installation of Gmsh - cpath_prepend "${PETSC_ROOT}/include" - library_path_prepend "${PETSC_ROOT}/lib" - ld_library_path_prepend "${PETSC_ROOT}/lib" - - if [[ ${MINGW} -eq 1 ]]; then - path_append "${PETSC_ROOT}/lib" # Allows dynamic loader to find DLLs - fi - - # In case we have installed certain external packages via PETSc - # - - # BLAS - if ls ${PETSC_ROOT}/lib/libblas.* 1> /dev/null 2>&1 || ls ${PETSC_ROOT}/lib/libfblas.* 1> /dev/null 2>&1; then - export BLAS_ROOT="${PETSC_ROOT}" # Used in installation of Dakota, GMT - fi - - # HDF5 - if ls ${PETSC_ROOT}/lib/libhdf5.* 1> /dev/null 2>&1; then - export HDF5_ROOT="${PETSC_ROOT}" # Used in installation of NetCDF, GDAL - cpath_append "${PETSC_ROOT}/include" - library_path_append "${PETSC_ROOT}/lib" - dyld_library_path_append "${PETSC_ROOT}/lib" - ld_library_path_append "${PETSC_ROOT}/lib" - fi - - # LAPACK - if ls ${PETSC_ROOT}/lib/liblapack.* 1> /dev/null 2>&1 || ls ${PETSC_ROOT}/lib/libflapack.* 1> /dev/null 2>&1; then - export LAPACK_ROOT="${PETSC_ROOT}" # Used in installation of Dakota, GMT - fi - - # METIS - if ls ${PETSC_ROOT}/lib/libmetis.* 1> /dev/null 2>&1; then - export METIS_ROOT="${PETSC_ROOT}" # Used in installation of Gmsh - fi - - # MPICH - if [ -f "${PETSC_ROOT}/bin/mpiexec" ]; then - MPI_ROOT=${PETSC_ROOT} - export MPI_DIR=${MPI_ROOT} - export MPI_HOME=${MPI_ROOT} # Used in installation of Dakota - export MPI_INC_DIR="${MPI_ROOT}/include" - path_prepend "${MPI_ROOT}/bin" - cpath_prepend "${MPI_ROOT}/include" - ld_library_path_append "${MPI_ROOT}/lib" - fi - - # ZLIB - if ls ${PETSC_ROOT}/lib/libz.* 1> /dev/null 2>&1; then - export ZLIB_ROOT="${PETSC_ROOT}" # Used in installation of NetCDF, GDAL - ld_library_path_append "${PETSC_ROOT}/lib" - fi -fi - -MPLAPACK_ROOT="${ISSM_EXT_DIR}/mplapack/install" -if [ -d "${MPLAPACK_ROOT}" ]; then - cplus_include_path_prepend "${MPLAPACK_ROOT}/include" - cplus_include_path_prepend "${MPLAPACK_ROOT}/include/mplapack" - library_path_prepend "${MPLAPACK_ROOT}/lib" - ld_library_path_prepend "${MPLAPACK_ROOT}/lib" -fi - -SCOTCH_ROOT="${ISSM_EXT_DIR}/scotch/install" -ld_library_path_append "${SCOTCH_ROOT}/lib" - -SLEPC_ROOT="${ISSM_EXT_DIR}/slepc/install" -ld_library_path_append "${SLEPC_ROOT}/lib" - -TAO_ROOT="${ISSM_EXT_DIR}/tao/install" -ld_library_path_append "${TAO_ROOT}/lib" - -BOOST_ROOT="${ISSM_EXT_DIR}/boost/install" -if [ -d "${BOOST_ROOT}" ]; then - export BOOST_ROOT # Used in installation of Dakota - export BOOST_DIR=${BOOST_ROOT} - export BOOSTROOT=${BOOST_ROOT} - path_append "${BOOST_ROOT}/bin" - library_path_prepend "${BOOST_ROOT}/lib" - ld_library_path_prepend "${BOOST_ROOT}/lib" - dyld_library_path_prepend "${BOOST_ROOT}/lib" -fi - -DAKOTA_ROOT="${ISSM_EXT_DIR}/dakota/install" -if [ -d "${DAKOTA_ROOT}" ]; then - path_append "${DAKOTA_ROOT}/bin" - ld_library_path_prepend "${DAKOTA_ROOT}/lib" - dyld_library_path_prepend "${DAKOTA_ROOT}/lib" -fi - -NCO_ROOT="${ISSM_EXT_DIR}/nco/install/bin" -path_prepend "${NCO_ROOT}/bin" - -CPPCHECK_ROOT="${ISSM_EXT_DIR}/cppcheck/install" -path_append "${CPPCHECK_ROOT}/bin" - -MERCURIAL_ROOT="${ISSM_EXT_DIR}/mercurial/install" -if [ -d "${MERCURIAL_ROOT}" ]; then - export PYTHONPATH="${PYTHONPATH}:${MERCURIAL_ROOT}/mercurial/pure/" - path_append "${MERCURIAL_ROOT}" -fi - -GSL_ROOT="${ISSM_EXT_DIR}/gsl/install" -if [ -d "${GSL_ROOT}" ]; then - export GSL_HOME="${GSL_ROOT}" # Used in installation of Dakota - cpath_prepend "${GSL_ROOT}/include" - ld_library_path_append "${GSL_ROOT}/lib" -fi - -NETCDF_ROOT="${ISSM_EXT_DIR}/netcdf/install" -if [ -d "${NETCDF_ROOT}" ]; then - export NETCDF_ROOT # Used in installation of GDAL, GMT - path_prepend "${NETCDF_ROOT}/bin" - cpath_prepend "${NETCDF_ROOT}/include" - library_path_prepend "${NETCDF_ROOT}/lib" - dyld_library_path_prepend "${NETCDF_ROOT}/lib" - ld_library_path_prepend "${NETCDF_ROOT}/lib" -fi - -NETCDF_CXX_ROOT="${ISSM_EXT_DIR}/netcdf-cxx/install" -if [ -d "${NETCDF_CXX_ROOT}" ]; then - ld_library_path_append "${NETCDF_CXX_ROOT}/lib" -fi - -NETCDF_PYTHON_ROOT="${ISSM_EXT_DIR}/netcdf-python/install" -if [ -d "${NETCDF_PYTHON_ROOT}" ]; then - if [ -d "${NETCDF_PYTHON_ROOT}/lib/python2.7/site-packages" ]; then - ld_library_path_append "${NETCDF_PYTHON_ROOT}/lib/python2.7/site-packages" - fi -fi - -CURL_ROOT="${ISSM_EXT_DIR}/curl/install" -if [ -d "${CURL_ROOT}" ]; then - export CURL_ROOT # Used in installation of NetCDF, GDAL, GMT - cpath_prepend "${CURL_ROOT}/include" - ld_library_path_prepend "${CURL_ROOT}/lib" - dyld_library_path_prepend "${CURL_ROOT}/lib" - path_append "${CURL_ROOT}/bin" -fi - -SQLITE_ROOT="${ISSM_EXT_DIR}/sqlite/install" -if [ -d "${SQLITE_ROOT}" ]; then - export SQLITE_ROOT # Used in installation of GDAL - path_prepend "${SQLITE_ROOT}/bin" - cpath_prepend "${SQLITE_ROOT}/include" - library_path_prepend "${SQLITE_ROOT}/lib" - ld_library_path_prepend "${SQLITE_ROOT}/lib" -fi - -LIBTIFF_ROOT="${ISSM_EXT_DIR}/libtiff/install" -if [ -d "${LIBTIFF_ROOT}" ]; then - dyld_library_path_append "${LIBTIFF_ROOT}/install/libtiff" - ld_library_path_append "${LIBTIFF_ROOT}/install/libtiff" -fi - -PROJ_ROOT="${ISSM_EXT_DIR}/proj/install" -if [ -d "${PROJ_ROOT}" ]; then - export PROJ_ROOT # Used in installation of GDAL - path_append "${PROJ_ROOT}/bin" - dyld_library_path_append "${PROJ_ROOT}/lib" - ld_library_path_append "${PROJ_ROOT}/lib" -fi - -GDAL_ROOT="${ISSM_EXT_DIR}/gdal/install" -if [ -d "${GDAL_ROOT}" ]; then - export GDAL_ROOT # Used in installation of GMT - path_prepend "${GDAL_ROOT}/bin" - ld_library_path_append "${GDAL_ROOT}/lib" -fi - -GSHHG_ROOT="${ISSM_EXT_DIR}/gshhg/install" -if [ -d "${GSHHG_ROOT}" ]; then - export GSHHG_ROOT # Used in installation of GMT -fi - -GMT_ROOT="${ISSM_EXT_DIR}/gmt/install" -if [ -d "${GMT_ROOT}" ]; then - path_prepend "${GMT_ROOT}/bin" - ld_library_path_append "${GMT_ROOT}/lib" - dyld_library_path_append "${GMT_ROOT}/lib" -fi - -GMSH_ROOT="${ISSM_EXT_DIR}/gmsh/install" -if [ -d "${GMSH_ROOT}" ]; then - path_prepend "${GMSH_ROOT}/bin" - ld_library_path_append "${GMSH_ROOT}/lib" - dyld_library_path_append "${GMSH_ROOT}/lib" -fi - -TRIANGLE_ROOT="${ISSM_EXT_DIR}/triangle/install" -if [ -d "${TRIANGLE_ROOT}" ]; then - ld_library_path_append "${TRIANGLE_ROOT}/lib" - dyld_library_path_append "${TRIANGLE_ROOT}/lib" - - if [[ ${MINGW} -eq 1 ]]; then - path_append "${TRIANGLE_ROOT}/lib" # Allows dynamic loader to find DLLs - fi -fi - -ANGELROOT="${ISSM_EXT_DIR}/angel/angel" -if [ -d "${ANGELROOT}" ]; then - export ANGELROOT -fi - -OPENANALYSISROOT="${ISSM_EXT_DIR}/openanalysis/install" -if [ -d "${OPENANALYSISROOT}" ]; then - export OPENANALYSISROOT - ld_library_path_append "${OPENANALYSISROOT}/lib" -fi - -BBFTP_ROOT="${ISSM_EXT_DIR}/bbftp/install" -path_append "${BBFTP_ROOT}/bin" - -ADIC_ROOT="${ISSM_EXT_DIR}/adic/install" -path_append "${ADIC_ROOT}/bin" -ld_library_path_append "${ADIC_ROOT}/lib" - -COLPACK_ROOT="${ISSM_EXT_DIR}/colpack/install" -ld_library_path_append "${COLPACK_ROOT}/lib" - -APPSCAN_ROOT="${ISSM_EXT_DIR}/appscan/install" -path_append "${APPSCAN_ROOT}/bin" - -RATS_ROOT="${ISSM_EXT_DIR}/rats/install" -path_append "${RATS_ROOT}/bin" - -DYSON_ROOT="${ISSM_EXT_DIR}/dyson/" -path_append "${DYSON_ROOT}" - -SHAPELIB_ROOT="${ISSM_EXT_DIR}/shapelib/install" -path_append "${SHAPELIB_ROOT}/exec" - -CCCL_ROOT="${ISSM_EXT_DIR}/cccl/install" -path_append "${CCCL_ROOT}/bin" - -MODELE_ROOT="${ISSM_EXT_DIR}/modelE/install" -path_append "${MODELE_ROOT}/src/exec" - -NCVIEW_ROOT="${ISSM_EXT_DIR}/ncview/install" -path_append "${NCVIEW_ROOT}" - -TCLX_ROOT="${ISSM_EXT_DIR}/tclx/install/lib/tclx8.4" -ld_library_path_append "${TCLX_ROOT}" - -ASPELL_ROOT="${ISSM_EXT_DIR}/aspell/install" -path_append "${ASPELL_ROOT}/bin" - -ESMF_ROOT="${ISSM_EXT_DIR}/esmf/install" -if [ -d "${ESMF_ROOT}" ]; then - path_prepend "${ESMF_ROOT}/bin" - ld_library_path_append "${ESMF_ROOT}/lib/libO/Linux.gfortran.64.mpich.default/" -fi - -CVS_ROOT="${ISSM_EXT_DIR}/cvs/install" -path_prepend "${CVS_ROOT}/bin" - -APR_ROOT="${ISSM_EXT_DIR}/apr/install" -path_append "${APR_ROOT}/bin" -ld_library_path_append "${APR_ROOT}/lib" - -APR_UTIL_ROOT="${ISSM_EXT_DIR}/apr-util/install" -path_prepend "${APR_UTIL_ROOT}/bin" -ld_library_path_append "${APR_UTIL_ROOT}/lib" - -YAMS_ROOT="${ISSM_EXT_DIR}/yams/install" -path_append "${YAMS_ROOT}" - -SWIG_ROOT="${ISSM_EXT_DIR}/swig/install" -path_append "${SWIG_ROOT}" - -INISHELL_ROOT="${ISSM_EXT_DIR}/inishell/install" -path_append "${INISHELL_ROOT}" - -EXPAT_ROOT="${ISSM_EXT_DIR}/expat/install" -ld_library_path_prepend "${EXPAT_ROOT}" -dyld_library_path_prepend "${EXPAT_ROOT}" - -NEOPZ_ROOT="${ISSM_EXT_DIR}/neopz/install" -if [ -d "${NEOPZ_ROOT}" ]; then - export REFPATTERNDIR="${NEOPZ_ROOT}/include/refpatterns" -fi - -XERCESROOT="${ISSM_EXT_DIR}/xerces/install" -if [ -d "${XERCESROOT}" ]; then - export XERCESROOT - export XERCESCROOT="${ISSM_EXT_DIR}/xerces/src" -fi - -XAIFBOOSTERROOT="${ISSM_EXT_DIR}/xaifbooster" -XAIF_ROOT="${XAIFBOOSTERROOT}/xaifBooster" -if [ -d "${XAIF_ROOT}" ]; then - export XAIFBOOSTERROOT - export XAIF_DIR="${XAIF_ROOT}" - export XAIFBOOSTER_HOME="${XAIF_ROOT}" - export PLATFORM="x86-Linux" -fi - -VALGRIND_ROOT="${ISSM_DIR}/externalpackages/valgrind/install" -if [ -d "${VALGRIND_ROOT="${ISSM_DIR}/valgrind/install" -}" ]; then - path_prepend "${VALGRIND_ROOT}/bin" -fi - -DOXYGEN_ROOT="${ISSM_EXT_DIR}/doxygen/install" -path_prepend "${DOXYGEN_ROOT}/bin" - -SHELL2JUNIT_ROOT="${ISSM_EXT_DIR}/shell2junit/install" -path_append "${SHELL2JUNIT_ROOT}" Index: /issm/trunk/etc/environment_variables =================================================================== --- /issm/trunk/etc/environment_variables (revision 1) +++ /issm/trunk/etc/environment_variables (revision 1) @@ -0,0 +1,56 @@ +# +# +#This routine can only be run if the ISSM_DIR variable has been correctly set! +# +# + + +#MATLAB +MATLAB_DIR="/usr/local/pkgs/matlab-7.6/" + +#MPI +MPI_DIR="$ISSM_DIR/packages/mpich2/install" + +#PETSC +PETSC_DIR="$ISSM_DIR/packages/petsc/install" +PETSC_ARCH="linux-gnu-amd64" + +#SLEPC +SLEPC_DIR="$ISSM_DIR/packages/slepc/install" +SLEPC_ARCH="linux-gnu-amd64" + +#Dakota +DAKOTA_DIR="$ISSM_DIR/packages/dakota/install" + +#Qhull +QHULL_DIR="$ISSM_DIR/packages/qhull/install" + +#Doxygen +DOXYGEN_DIR="$ISSM_DIR/packages/doxygen/install" + +#MTOC +MTOC_DIR="$ISSM_DIR/packages/mtoc/install" + +#Triangle +TRIANGLE_DIR="$ISSM_DIR/packages/triangle/install" + +#METIS +METIS_DIR="$ISSM_DIR/packages/metis/install" + +#BLAS +BLAS_DIR="$ISSM_DIR/packages/petsc/install/externalpackages/fblaslapack" + +#LAPACK +LAPACK_DIR="$ISSM_DIR/packages/petsc/install/externalpackages/fblaslapack/$PETSC_ARCH" + +#SCALAPACK +SCALAPACK_DIR="$ISSM_DIR/packages/petsc/install/externalpackages/SCALAPACK/$PETSC_ARCH" + +#PLAPACK +PLAPACK_DIR="$ISSM_DIR/packages/petsc/install/externalpackages/PLAPACKR32" + +#BLACS +BLACS_DIR="$ISSM_DIR/packages/petsc/install/externalpackages/blacs-dev/$PETSC_ARCH" + +#sowing +SOWING_DIR="$ISSM_DIR/packages/sowing/install" Index: /issm/trunk/etc/mexopts_mac.sh =================================================================== --- /issm/trunk/etc/mexopts_mac.sh (revision 1) +++ /issm/trunk/etc/mexopts_mac.sh (revision 1) @@ -0,0 +1,357 @@ +# +# mexopts.sh Shell script for configuring MEX-file creation script, +# mex. These options were tested with the specified compiler. +# +# usage: Do not call this file directly; it is sourced by the +# mex shell script. Modify only if you don't like the +# defaults after running mex. No spaces are allowed +# around the '=' in the variable assignment. +# +# Note: For the version of system compiler supported with this release, +# refer to Technical Note 1601 at: +# http://www.mathworks.com/support/tech-notes/1600/1601.html +# +# +# SELECTION_TAGs occur in template option files and are used by MATLAB +# tools, such as mex and mbuild, to determine the purpose of the contents +# of an option file. These tags are only interpreted when preceded by '#' +# and followed by ':'. +# +#SELECTION_TAG_MEX_OPT: Template Options file for building MEX-files via the system ANSI compiler +# +# Copyright 1984-2007 The MathWorks, Inc. +# $Revision: 1.1 $ $Date: 2009/03/18 12:46:35 $ +#---------------------------------------------------------------------------- +# + TMW_ROOT="$MATLAB" + MFLAGS='' + if [ "$ENTRYPOINT" = "mexLibrary" ]; then + MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmat -lmwservices -lut" + else + MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmat" + fi + case "$Arch" in + Undetermined) +#---------------------------------------------------------------------------- +# Change this line if you need to specify the location of the MATLAB +# root directory. The script needs to know where to find utility +# routines so that it can determine the architecture; therefore, this +# assignment needs to be done while the architecture is still +# undetermined. +#---------------------------------------------------------------------------- + MATLAB="$MATLAB" + ;; + glnx86) +#---------------------------------------------------------------------------- + RPATH="-Wl,-rpath-link,$TMW_ROOT/bin/$Arch" + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc' + CFLAGS='-ansi -D_GNU_SOURCE' + CFLAGS="$CFLAGS -fPIC -pthread -m32" + CFLAGS="$CFLAGS -fexceptions" + CFLAGS="$CFLAGS -D_FILE_OFFSET_BITS=64" + CLIBS="$RPATH $MLIBS -lm" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' + CLIBS="$CLIBS -lstdc++" +# + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX='g++' + CXXFLAGS='-ansi -D_GNU_SOURCE' + CXXFLAGS="$CXXFLAGS -D_FILE_OFFSET_BITS=64" + CXXFLAGS="$CXXFLAGS -fPIC -pthread" + CXXLIBS="$RPATH $MLIBS -lm" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# + # FortrankeyName: g95 + # FortrankeyManufacturer: GNU + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='g95' + FFLAGS='-fexceptions' + FFLAGS="$FFLAGS -fPIC" + FLIBS="$RPATH $MLIBS -lm" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDEXTENSION='.mexglx' + LDFLAGS="-pthread -shared -m32 -Wl,--version-script,$TMW_ROOT/extern/lib/$Arch/$MAPFILE -Wl,--no-undefined" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + glnxa64) +#---------------------------------------------------------------------------- + RPATH="-Wl,-rpath-link,$TMW_ROOT/bin/$Arch" + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc' + CFLAGS='-ansi -D_GNU_SOURCE' + CFLAGS="$CFLAGS -fexceptions" + CFLAGS="$CFLAGS -fPIC -fno-omit-frame-pointer -pthread" + CLIBS="$RPATH $MLIBS -lm" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' + CLIBS="$CLIBS -lstdc++" +# + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX='g++' + CXXFLAGS='-ansi -D_GNU_SOURCE' + CXXFLAGS="$CXXFLAGS -fPIC -fno-omit-frame-pointer -pthread" + CXXLIBS="$RPATH $MLIBS -lm" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# + # FortrankeyName: g95 + # FortrankeyManufacturer: GNU + # FortrankeyLanguage: Fortran + # FortrankeyVersion: +# + FC='g95' + FFLAGS='-fexceptions' + FFLAGS="$FFLAGS -fPIC -fno-omit-frame-pointer" + FLIBS="$RPATH $MLIBS -lm" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDEXTENSION='.mexa64' + LDFLAGS="-pthread -shared -Wl,--version-script,$TMW_ROOT/extern/lib/$Arch/$MAPFILE -Wl,--no-undefined" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + sol64) +#---------------------------------------------------------------------------- + # StorageVersion: 1.0 + # CkeyName: Sun Studio + # CkeyManufacturer: Sun + # CkeyLanguage: C + # CkeyVersion: + CC='cc -xarch=v9a' + CFLAGS='-dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt' + CFLAGS="$CFLAGS -KPIC" + CLIBS="$MLIBS -lm" + CLIBS="$CLIBS -lc" + COPTIMFLAGS='-xO3 -xlibmil -DNDEBUG' + CDEBUGFLAGS='-xs -g' +# + # C++keyName: Sun Studio + # C++keyManufacturer: Sun + # C++keyLanguage: C++ + # C++keyVersion: + CXX='CC -xarch=v9a -compat=5' + CCV=`CC -xarch=v9a -V 2>&1` + version=`expr "$CCV" : '.*\([0-9][0-9]*\)\.'` + if [ "$version" = "4" ]; then + echo "SC5.0 or later C++ compiler is required" + fi + CXXFLAGS='-dalign -xlibmieee -D__EXTENSIONS__ -library=stlport4,Crun' + CXXFLAGS="$CXXFLAGS -D_POSIX_C_SOURCE=199506L -mt" + CXXFLAGS="$CXXFLAGS -KPIC -norunpath" + CXXLIBS="$MLIBS -lm" + CXXOPTIMFLAGS='-xO3 -xlibmil -DNDEBUG' + CXXDEBUGFLAGS='-xs -g' +# + # FortrankeyName: Sun Studio + # FortrankeyManufacturer: Sun + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='f90 -xarch=v9a' + FFLAGS='-dalign' + FFLAGS="$FFLAGS -KPIC -mt" + FLIBS="$MLIBS -lfui -lfsu -lsunmath -lm -lc" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-xs -g' +# + LD="$COMPILER" + LDEXTENSION='.mexs64' + LDFLAGS="-G -mt -M$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-xs -g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + mac) +#---------------------------------------------------------------------------- + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc-4.0' + CFLAGS='-fno-common -no-cpp-precomp' + CFLAGS="$CFLAGS" + CLIBS="$MLIBS" + COPTIMFLAGS='-O3 -fno-loop-optimize -DNDEBUG' + CDEBUGFLAGS='-g' +# + CLIBS="$CLIBS -lstdc++" + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX=g++-4.0 + CXXFLAGS='-fno-common -no-cpp-precomp -fexceptions -arch ppc' + CXXLIBS="$MLIBS -lstdc++" + CXXOPTIMFLAGS='-O3 -fno-loop-optimize -DNDEBUG' + CXXDEBUGFLAGS='-g' +# + # FortrankeyName: g95 + # FortrankeyManufacturer: GNU + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='g95' + FFLAGS='-fexceptions' + FC_LIBDIR=`$FC -print-file-name=libf95.a 2>&1 | sed -n '1s/\/*libf95\.a//p'` + FLIBS="$MLIBS -L$FC_LIBDIR -lf95" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$CC" + LDEXTENSION='.mexmac' + LDFLAGS='-Wl,-flat_namespace -undefined suppress' + LDFLAGS="$LDFLAGS -bundle -Wl,-exported_symbols_list,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + maci) +#---------------------------------------------------------------------------- + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc-4.0' + CFLAGS='-fno-common -no-cpp-precomp' + CFLAGS="$CFLAGS -fexceptions" + CLIBS="$MLIBS" + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' +# + CLIBS="$CLIBS -lstdc++" + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX=g++-4.0 + CXXFLAGS='-fno-common -no-cpp-precomp -fexceptions -arch i386' + CXXLIBS="$MLIBS -lstdc++" + CXXOPTIMFLAGS='-O3 -DNDEBUG' + CXXDEBUGFLAGS='-g' +# + # FortrankeyName: g95 + # FortrankeyManufacturer: GNU + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='g95' + FFLAGS='-fexceptions' + FC_LIBDIR=`$FC -print-file-name=libf95.a 2>&1 | sed -n '1s/\/*libf95\.a//p'` + FLIBS="$MLIBS -L$FC_LIBDIR -lf95" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$CC" + LDEXTENSION='.mexmaci' + LDFLAGS='-Wl,-flat_namespace -undefined suppress' + LDFLAGS="$LDFLAGS -bundle -Wl,-exported_symbols_list,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + maci64) +#---------------------------------------------------------------------------- + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc-4.0' + CFLAGS='-fno-common -no-cpp-precomp -fexceptions -arch x86_64' + CLIBS="$MLIBS -lstdc++" + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' +# + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX=g++-4.0 + CXXFLAGS='-fno-common -no-cpp-precomp -fexceptions -arch x86_64' + CXXLIBS="$MLIBS -lstdc++" + CXXOPTIMFLAGS='-O3 -DNDEBUG' + CXXDEBUGFLAGS='-g' +# + # FortrankeyName: Intel Fortran + # FortrankeyManufacturer: Intel + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='ifort' + FFLAGS='' + FC_LIBDIR='' + FLIBS="$MLIBS" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$CC" + LDEXTENSION='.mexmaci64' + LDFLAGS='-Wl,-twolevel_namespace -undefined error -arch x86_64' + LDFLAGS="$LDFLAGS -bundle -Wl,-exported_symbols_list,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + esac +############################################################################# +# +# Architecture independent lines: +# +# Set and uncomment any lines which will apply to all architectures. +# +#---------------------------------------------------------------------------- +# CC="$CC" +# CFLAGS="$CFLAGS" +# COPTIMFLAGS="$COPTIMFLAGS" +# CDEBUGFLAGS="$CDEBUGFLAGS" +# CLIBS="$CLIBS" +# +# FC="$FC" +# FFLAGS="$FFLAGS" +# FOPTIMFLAGS="$FOPTIMFLAGS" +# FDEBUGFLAGS="$FDEBUGFLAGS" +# FLIBS="$FLIBS" +# +# LD="$LD" +# LDFLAGS="$LDFLAGS" +# LDOPTIMFLAGS="$LDOPTIMFLAGS" +# LDDEBUGFLAGS="$LDDEBUGFLAGS" +#---------------------------------------------------------------------------- +############################################################################# Index: /issm/trunk/etc/mexopts_v5.sh =================================================================== --- /issm/trunk/etc/mexopts_v5.sh (revision 1) +++ /issm/trunk/etc/mexopts_v5.sh (revision 1) @@ -0,0 +1,251 @@ +# +# +# mexopts_v5.sh: +# +# modifications to mexopts.sh as follows: +# +# solaris: added -v compiler flag for lint-type code checking +# (otherwise mex script treats -v as "verbose" request) +# +# note: searching on "mexopts_v5.sh" will bring you to the changes +# +#---------------------------------------------------------------------------- +# +# +# mexopts.sh Shell script for configuring MEX-file creation script, +# mex. +# +# usage: Do not call this file directly; it is sourced by the +# mex shell script. Modify only if you don't like the +# defaults after running mex. No spaces are allowed +# around the '=' in the variable assignment. +# +# SELECTION_TAGs occur in template option files and are used by MATLAB +# tools, such as mex and mbuild, to determine the purpose of the contents +# of an option file. These tags are only interpreted when preceded by '#' +# and followed by ':'. +# +#SELECTION_TAG_MEX_OPT: Template Options file for building MEXfiles using the system ANSI compiler +# +# Copyright (c) 1984-1998 by The MathWorks, Inc. +# All Rights Reserved. +# $Revision: 1.2 $ $Date: 2009/03/18 13:57:38 $ +#---------------------------------------------------------------------------- +# + case "$Arch" in + Undetermined) +#---------------------------------------------------------------------------- +# Change this line if you need to specify the location of the MATLAB +# root directory. The cmex script needs to know where to find utility +# routines so that it can determine the architecture; therefore, this +# assignment needs to be done while the architecture is still +# undetermined. +#---------------------------------------------------------------------------- + MATLAB="$MATLAB" + ;; + alpha) +#---------------------------------------------------------------------------- + CC='cc' + CFLAGS='-ieee -std1' + CLIBS='' + COPTIMFLAGS='-O2 -DNDEBUG' + CDEBUGFLAGS='-g' +# + FC='f77' + FFLAGS='-shared' + FLIBS='-lUfor -lfor -lFutil' + FOPTIMFLAGS='-O2' + FDEBUGFLAGS='-g' +# + LD='ld' + LDFLAGS="-expect_unresolved '*' -shared -hidden -exported_symbol $ENTRYPOINT -exported_symbol mexVersion" + LDOPTIMFLAGS='' + LDDEBUGFLAGS='' +#---------------------------------------------------------------------------- + ;; + hp700) +#---------------------------------------------------------------------------- + CC='cc' +# +# Remove +DAportable from CFLAGS if you wish to optimize for target machine +# + CFLAGS='+z -D_HPUX_SOURCE -Aa +DAportable' + CLIBS='' + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# + FC='f77' + FFLAGS='+z +DAportable' + FLIBS='' + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD='ld' + LDFLAGS="-b +e $ENTRYPOINT +e mexVersion" + LDOPTIMFLAGS='' + LDDEBUGFLAGS='' +#---------------------------------------------------------------------------- + ;; + ibm_rs) +#---------------------------------------------------------------------------- + CC='cc' + CFLAGS='-qlanglvl=ansi' + CLIBS="-L$MATLAB/bin/$Arch -lmatlbmx -lm" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# + FC='f77' + FFLAGS='' + FLIBS="$MATLAB/extern/lib/ibm_rs/fmex1.o -lm" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD='cc' + LDFLAGS="-bI:$MATLAB/extern/lib/ibm_rs/exp.ibm_rs -bE:$MATLAB/extern/lib/ibm_rs/$MAPFILE -bM:SRE -e $ENTRYPOINT" + LDOPTIMFLAGS='-s' + LDDEBUGFLAGS='' +#---------------------------------------------------------------------------- + ;; + lnx86) # gcc version 2.7.2.1 +#---------------------------------------------------------------------------- +# +# Default to libc5 based development (ie. RedHat4.2) +# + CC='gcc' + if [ -f /etc/redhat-release ]; then + OS=`cat /etc/redhat-release` + version=`expr "$OS" : '.*\([0-9][0-9]*\)\.'` +# +# Use this compiler for RedHat5.* systems +# + if [ "$version" = "5" ]; then + CC='i486-linuxlibc5-gcc' + fi + elif [ -f /etc/debian_version ]; then + OS=`cat /etc/debian_version` + version=`expr "$OS" : '.*\([0-9][0-9]*\)\.'` +# +# Use this compiler for Debian 2.* systems +# + if [ "$version" = "2" ]; then + CC='i486-linuxlibc1-gcc' + fi + fi + CFLAGS='' + CLIBS='' + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' +# +# These flags use f2c and gcc for building FORTRAN MEX-Files +# The fort77 script invokes the f2c command transparently, +# so it can be used like a real FORTRAN compiler. +# + FC='fort77' + FFLAGS='' + FLIBS='-lf2c -Wl,--defsym,MAIN__=mexfunction_' +# +# Use these flags for the Absoft F77 Fortran Compiler +# + # FC='f77' + # FFLAGS='-f -N1 -B24 -B108 -N90' + # FLIBS='-lU77 -lV77 -lfio -lf77math' +# + FOPTIMFLAGS='-O3' + FDEBUGFLAGS='-g' +# + LD=$CC + LDFLAGS='-shared' + LDOPTIMFLAGS='' + LDDEBUGFLAGS='' +#---------------------------------------------------------------------------- + ;; + sgi) +#---------------------------------------------------------------------------- + CC='cc' + CFLAGS='-o32' + CLIBS='' + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# + FC='f77' + FFLAGS='-o32' + FLIBS='' + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD='ld' + LDFLAGS="-o32 -shared -exported_symbol $ENTRYPOINT -exported_symbol mexVersion" + LDOPTIMFLAGS='' + LDDEBUGFLAGS='' + ;; +#---------------------------------------------------------------------------- + sgi64) +#---------------------------------------------------------------------------- + CC='cc' + CFLAGS='-64' + CLIBS='' + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# + FC='f77' + FFLAGS='-64' + FLIBS='' + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD='ld' + LDFLAGS="-64 -shared -exported_symbol $ENTRYPOINT -exported_symbol mexVersion" + LDOPTIMFLAGS='' + LDDEBUGFLAGS='' + ;; +#---------------------------------------------------------------------------- + sol2) +#---------------------------------------------------------------------------- + CC='cc' +# mexopts_v5.sh change: + CFLAGS='-v -dalign -KPIC' +# was: +# CFLAGS='-dalign -KPIC' + CLIBS='' + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# + FC='f77' + FFLAGS='-dalign -KPIC' + FLIBS='-lF77 -lM77 -lsunmath -lm -lmvec -lcx -lc -lf77compat -lfsu' + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# +# LD='/usr/ccs/bin/ld' + LD='cc' + LDFLAGS="-G -M $MATLAB/extern/lib/sol2/$MAPFILE" + LDOPTIMFLAGS='' + LDDEBUGFLAGS='' +#---------------------------------------------------------------------------- + ;; + esac +############################################################################# +# +# Architecture independent lines: +# +# Set and uncomment any lines which will apply to all architectures. +# +#---------------------------------------------------------------------------- +# CC="$CC" + CFLAGS="$CFLAGS -Werror-implicit-function-declaration" +# COPTIMFLAGS="$COPTIMFLAGS" +# CDEBUGFLAGS="$CDEBUGFLAGS" +# CLIBS="$CLIBS" +# +# FC="$FC" +# FFLAGS="$FFLAGS" +# FOPTIMFLAGS="$FOPTIMFLAGS" +# FDEBUGFLAGS="$FDEBUGFLAGS" +# FLIBS="$FLIBS" +# +# LD="$LD" +# LDFLAGS="$LDFLAGS" +# LDOPTIMFLAGS="$LDOPTIMFLAGS" +# LDDEBUGFLAGS="$LDDEBUGFLAGS" +#---------------------------------------------------------------------------- +############################################################################# Index: /issm/trunk/etc/mexopts_v651.sh =================================================================== --- /issm/trunk/etc/mexopts_v651.sh (revision 1) +++ /issm/trunk/etc/mexopts_v651.sh (revision 1) @@ -0,0 +1,390 @@ +# +# +# mexopts_v651.sh: +# +# modifications to mexopts.sh as follows: +# +# solaris: added -v compiler flag for lint-type code checking +# (otherwise mex script treats -v as "verbose" request) +# +# note: searching on "mexopts_v651.sh" will bring you to the changes +# +#---------------------------------------------------------------------------- +# +# mexopts.sh Shell script for configuring MEX-file creation script, +# mex. These options were tested with the specified compiler. +# +# usage: Do not call this file directly; it is sourced by the +# mex shell script. Modify only if you don't like the +# defaults after running mex. No spaces are allowed +# around the '=' in the variable assignment. +# +# SELECTION_TAGs occur in template option files and are used by MATLAB +# tools, such as mex and mbuild, to determine the purpose of the contents +# of an option file. These tags are only interpreted when preceded by '#' +# and followed by ':'. +# +#SELECTION_TAG_MEX_OPT: Template Options file for building MEX-files via the system ANSI compiler +# +# Copyright 1984-2000 The MathWorks, Inc. +# $Revision: 1.1 $ $Date: 2009/03/18 12:46:35 $ +#---------------------------------------------------------------------------- +# + TMW_ROOT="$MATLAB" + MFLAGS='' + if [ "$ENTRYPOINT" = "mexLibrary" ]; then + MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmatlb -lmat -lmwservices -lut -lm" + else + MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmat -lm" + fi + case "$Arch" in + Undetermined) +#---------------------------------------------------------------------------- +# Change this line if you need to specify the location of the MATLAB +# root directory. The script needs to know where to find utility +# routines so that it can determine the architecture; therefore, this +# assignment needs to be done while the architecture is still +# undetermined. +#---------------------------------------------------------------------------- + MATLAB="$MATLAB" + ;; + alpha) +#---------------------------------------------------------------------------- +# cc -V | grep UNIX +# DEC C V5.9-008 on Digital UNIX V4.0 (Rev. 1229) +# Digital UNIX Compiler Driver 3.11 + CC='cc' + CFLAGS='-shared -ieee -pthread -std1' + CLIBS="$MLIBS -lm" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# +# cxx -V +# Compaq C++ V6.2-024 for Digital UNIX V4.0F (Rev. 1229) + CXX='cxx' + CXXFLAGS='-shared -ieee -pthread' + CXXLIBS="$MLIBS -lm" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# f77 -what +# Compaq Fortran 77 Driver V5.3-11 +# Compaq Fortran 77 V5.3-189-449BB + FC='f77' + FFLAGS='-shared -fpe3 -pthread' + FLIBS="$MLIBS -lm" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDFLAGS="-pthread -shared -Wl,-expect_unresolved,'*',-hidden,-exported_symbol,$ENTRYPOINT,-exported_symbol,mexVersion,-exported_symbol,'__*'" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + hpux) +#---------------------------------------------------------------------------- +# what `which cc` +# HP92453-01 B.11.11.02 HP C Compiler +# $ Sep 8 2000 23:13:51 $ + CC='cc' + CFLAGS='+Z +DA2.0 -D_POSIX_C_SOURCE=199506L -Wp,-H65535 -Ae' + CLIBS="$MLIBS -lm -lc" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# +# what `which aCC` +# HP aC++ B3910B A.03.30 +# HP aC++ B3910B X.03.27 Language Support Library + CXX='aCC' + CXXFLAGS='-AA +Z +DA2.0 -D_POSIX_C_SOURCE=199506L -D_HPUX_SOURCE' + CXXLIBS="$MLIBS -lm -lstd_v2 -lCsup_v2" + CXXOPTIMFLAGS='-O -DNDEBUG +Oconservative' + CXXDEBUGFLAGS='-g' +# +# what `which f90` +# HP-UX f90 20001114 (140952) B3907DB/B3909DB B.11.01.27 +# HP F90 v2.4.10 +# $ PATCH/11.00:PHCO_95167 Oct 1 1998 13:46:32 $ + F90LIBDIR='/opt/fortran90/lib/pa2.0' + FC='f90' + FFLAGS='+Z +DA2.0' + FLIBS="$MLIBS -lm -L$F90LIBDIR -lF90 -lcl -lc -lisamstub" + FOPTIMFLAGS='-O +Oconservative' + FDEBUGFLAGS='-g' +# + LDCXX="$COMPILER" + LDCXXFLAGS="-b -Wl,+e,$ENTRYPOINT,+e,mexVersion,+e,_shlInit" + LDCXXOPTIMFLAGS='-O' + LDCXXDEBUGFLAGS='-g' +# + LD='ld' + LDFLAGS="-b +e $ENTRYPOINT +e mexVersion" + LDOPTIMFLAGS='' + LDDEBUGFLAGS='' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + hp700) +#---------------------------------------------------------------------------- +# what `which cc` +# HP92453-01 A.10.32.30 HP C Compiler + CC='cc' +# Remove +DAportable from CFLAGS if you wish to optimize +# for target machine + CFLAGS='+Z -Ae +DAportable -Wp,-H65535' + CLIBS="$MLIBS -lc" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# +# what `which aCC` +# HP aC++ B3910B A.01.27 +# HP aC++ B3910B A.01.19.02 Language Support Library + CXX='aCC' +# Remove +DAportable from CXXFLAGS if you wish to optimize +# for target machine + CXXFLAGS='-AA +Z -D_HPUX_SOURCE +DAportable' + CXXLIBS="$MLIBS -lstd_v2 -lCsup_v2" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# what `which f90` +# HP-UX f90 20010618 (003353) B3907DB/B3909DB PHSS_23952 also B.10.20.40 +# HP F90 v2.5.1 + F90LIBDIR='/opt/fortran90/lib' + FC='f90' + FFLAGS='+Z +DAportable' + FLIBS="$MLIBS -L$F90LIBDIR -lF90 -lcl -lc -lisamstub" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LDCXX="$COMPILER" + LDCXXFLAGS="-b -Wl,+e,$ENTRYPOINT,+e,mexVersion,+e,_shlInit,+e,errno" + LDCXXOPTIMFLAGS='-O' + LDCXXDEBUGFLAGS='-g' +# + LD='ld' + LDFLAGS="-b +e $ENTRYPOINT +e mexVersion +e errno" + LDOPTIMFLAGS='' + LDDEBUGFLAGS='' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + ibm_rs) +#---------------------------------------------------------------------------- +# lslpp -l | vacpp.cmp.core +# 5.0.0.0 COMMITTED IBM C and C++ Compilers + CC='cc' + CFLAGS='-D_THREAD_SAFE -D_ALL_SOURCE -qchars=signed -qlanglvl=ansi' + CLIBS="$MLIBS -lm " + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# lslpp -l vacpp.cmp.core +# 5.0.0.0 COMMITTED IBM C and C++ Compilers + CXX='/usr/vacpp/bin/xlC' + CXXFLAGS='-D_THREAD_SAFE -D_ALL_SOURCE -qrtti=all' + CXXLIBS="$MLIBS -lm" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# lslpp -l xlfcmp +# 7.1.0.0 COMMITTED I XL Fortran Compiler + FC='f77' + FFLAGS='' + FLIBS="$MLIBS -lmat -lm" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LDCXX='/usr/vacpp/bin/makeC++SharedLib' + LDCXXFLAGS='-p 0' + LDCXXOPTIMFLAGS='' + LDCXXDEBUGFLAGS='' +# + LD="$COMPILER" + LDFLAGS="-bE:$TMW_ROOT/extern/lib/$Arch/$MAPFILE -bM:SRE -bnoentry" + LDOPTIMFLAGS='-O -Wl,-s' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + glnx86) +#---------------------------------------------------------------------------- + RPATH="-Wl,--rpath-link,$TMW_ROOT/extern/lib/$Arch,--rpath-link,$TMW_ROOT/bin/$Arch" +# gcc -v +# gcc version 2.95.2 19991024 (release) + CC='gcc' + CFLAGS='-fPIC -ansi -D_GNU_SOURCE -pthread' + CLIBS="$RPATH $MLIBS -lm" + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' +# +# g++ -v +# gcc version 2.95.2 19991024 (release) + CXX='g++' +# Add -fhandle-exceptions to CXXFLAGS to support exception handling + CXXFLAGS='-fPIC -ansi -D_GNU_SOURCE -pthread' + CXXLIBS="$RPATH $MLIBS -lm" + COPTIMFLAGS='-O3 -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# g77 -v -xf77-version +# g77 version 2.95.2 19991024 (release) +# (from FSF-g77 version 0.5.25 19991024 (release)) +# NOTE: g77 is not thread safe + FC='g77' + FFLAGS='-fPIC' + FLIBS="$RPATH $MLIBS -lm" + FOPTIMFLAGS='-O3' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDFLAGS="-pthread -shared -Wl,--version-script,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O3' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + sgi) +#---------------------------------------------------------------------------- +# cc -version +# MIPSpro Compilers: Version 7.3.1.2m + CC='cc' + CFLAGS='-n32 -signed -OPT:IEEE_NaN_inf=ON -D_POSIX_C_SOURCE=199506L -D__EXTENSIONS__ -D_XOPEN_SOURCE -D_XOPEN_SOURCE_EXTENDED' + CLIBS="-dont_warn_unused $MLIBS -lm -lc" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# +# CC -version +# MIPSpro Compilers: Version 7.3.1.2m + CXX='CC' +# Add -exceptions to CXXFLAGS to support exception handling + CXXFLAGS='-n32 -OPT:IEEE_NaN_inf=ON -D_POSIX_C_SOURCE=199506L -D__EXTENSIONS__ -D_XOPEN_SOURCE -D_XOPEN_SOURCE_EXTENDED -LANG:STD -ptused' + CXXLIBS="-dont_warn_unused $MLIBS -lm -lC -lCio" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# f77 -version +# MIPSpro Compilers: Version 7.3.1.2m + FC='f77' + FFLAGS='-n32 -OPT:IEEE_NaN_inf=ON' + FLIBS="-dont_warn_unused $MLIBS -lm" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDFLAGS="-n32 -shared -exported_symbol $ENTRYPOINT -exported_symbol mexVersion" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + sol2) +#---------------------------------------------------------------------------- +# cc -V +# WorkShop Compilers 5.0 98/12/15 C 5.0 + CC='cc' +# mexopts_v651.sh change: + CFLAGS='-v -KPIC -dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt' +# was: +# CFLAGS='-KPIC -dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt' + CLIBS="$MLIBS -lm -lc" + COPTIMFLAGS='-xO3 -xlibmil -DNDEBUG' + CDEBUGFLAGS='-g' +# +# CC -V +# WorkShop Compilers 5.0 98/12/15 C++ 5.0 + CXX='CC -compat=5' + CCV=`CC -V 2>&1` + version=`expr "$CCV" : '.*\([0-9][0-9]*\)\.'` + if [ "$version" = "4" ]; then + echo "SC5.0 or later C++ compiler is required" + fi + CXXFLAGS='-KPIC -dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt' + CXXLIBS="$MLIBS -lm -lCstd -lCrun" + CXXOPTIMFLAGS='-xO3 -xlibmil -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# f77 -V +# WorkShop Compilers 5.0 99/09/16 FORTRAN 77 5.0 patch 107596-03 + FC='f77' + FFLAGS='-KPIC -dalign -mt' + FLIBS="$MLIBS -lF77 -lM77 -lsunmath -lm -lcx -lc" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDFLAGS="-G -mt -M$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + mac) +#---------------------------------------------------------------------------- + CC='cc' + CFLAGS='-fno-common -traditional-cpp' + + CLIBS="$MLIBS" + + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' + + if [ -f /usr/bin/g++2 ]; then + CXX=g++2 + else + CXX=c++ + fi + CXXFLAGS='-fno-common -traditional-cpp' + CXXLIBS="$MLIBS -lstdc++" + CXXOPTIMFLAGS='-O3 -DNDEBUG' + CXXDEBUGFLAGS='-g' +# + FC='f77' + FFLAGS='-f -N15 -N11 -s -Q51 -W' + ABSOFTLIBDIR=`which $FC | sed -n -e '1s|bin/'$FC'|lib|p'` + FLIBS="-L$ABSOFTLIBDIR -lfio -lf77math" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$CC" + LDFLAGS="-bundle -Wl,-flat_namespace -undefined suppress" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS='nmedit -s $TMW_ROOT/extern/lib/$Arch/$MAPFILE $mex_file' +#---------------------------------------------------------------------------- + ;; + esac +############################################################################# +# +# Architecture independent lines: +# +# Set and uncomment any lines which will apply to all architectures. +# +#---------------------------------------------------------------------------- +# CC="$CC" +# CFLAGS="$CFLAGS" +# COPTIMFLAGS="$COPTIMFLAGS" +# CDEBUGFLAGS="$CDEBUGFLAGS" +# CLIBS="$CLIBS" +# +# FC="$FC" +# FFLAGS="$FFLAGS" +# FOPTIMFLAGS="$FOPTIMFLAGS" +# FDEBUGFLAGS="$FDEBUGFLAGS" +# FLIBS="$FLIBS" +# +# LD="$LD" +# LDFLAGS="$LDFLAGS" +# LDOPTIMFLAGS="$LDOPTIMFLAGS" +# LDDEBUGFLAGS="$LDDEBUGFLAGS" +#---------------------------------------------------------------------------- +############################################################################# Index: /issm/trunk/etc/mexopts_v704.sh =================================================================== --- /issm/trunk/etc/mexopts_v704.sh (revision 1) +++ /issm/trunk/etc/mexopts_v704.sh (revision 1) @@ -0,0 +1,323 @@ +# +# +# mexopts_v704.sh: +# +# modifications to mexopts.sh as follows: +# +# solaris: added -v compiler flag for lint-type code checking +# (otherwise mex script treats -v as "verbose" request) +# +# linux: remove ansi c compilation requirement. +# +# note: searching on "mexopts_v704.sh" will bring you to the changes +# +#---------------------------------------------------------------------------- +# +# +# mexopts.sh Shell script for configuring MEX-file creation script, +# mex. These options were tested with the specified compiler. +# +# usage: Do not call this file directly; it is sourced by the +# mex shell script. Modify only if you don't like the +# defaults after running mex. No spaces are allowed +# around the '=' in the variable assignment. +# +# SELECTION_TAGs occur in template option files and are used by MATLAB +# tools, such as mex and mbuild, to determine the purpose of the contents +# of an option file. These tags are only interpreted when preceded by '#' +# and followed by ':'. +# +#SELECTION_TAG_MEX_OPT: Template Options file for building MEX-files via the system ANSI compiler +# +# Copyright 1984-2004 The MathWorks, Inc. +# $Revision: 1.1 $ $Date: 2009/03/18 12:46:35 $ +#---------------------------------------------------------------------------- +# + TMW_ROOT="$MATLAB" + MFLAGS='' + if [ "$ENTRYPOINT" = "mexLibrary" ]; then + MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmat -lmwservices -lut" + else + MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmat" + fi + case "$Arch" in + Undetermined) +#---------------------------------------------------------------------------- +# Change this line if you need to specify the location of the MATLAB +# root directory. The script needs to know where to find utility +# routines so that it can determine the architecture; therefore, this +# assignment needs to be done while the architecture is still +# undetermined. +#---------------------------------------------------------------------------- + MATLAB="$MATLAB" + ;; + hpux) +#---------------------------------------------------------------------------- +# what `which cc` +# HP92453-01 B.11.11.06 HP C Compiler + CC='cc' + COMPFLAGS='-z +Z +DA2.0 -mt' + CFLAGS="-Ae $COMPFLAGS -Wp,-H65535" + CLIBS="$MLIBS -lm -lc" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# +# what `which aCC` +# HP aC++ B3910B A.03.37 +# HP aC++ B3910B A.03.30 Language Support Library + CXX='aCC' + CXXFLAGS="$MCXXFLAGS -AA -D_HPUX_SOURCE $COMPFLAGS" + CXXLIBS="$MLIBS -lm -lstd_v2 -lCsup_v2" + CXXOPTIMFLAGS='-O -DNDEBUG +Oconservative' + CXXDEBUGFLAGS='-g' +# +# what `which f90` +# HP-UX f90 20020606 (083554) B3907DB/B3909DB B.11.01.60 +# HP F90 v2.6 +# $ PATCH/11.00:PHCO_95167 Oct 1 1998 13:46:32 $ + F90LIBDIR='/opt/fortran90/lib/pa2.0' + FC='f90' + FFLAGS='+Z +DA2.0' + FLIBS="$MLIBS -lm -L$F90LIBDIR -lF90 -lcl -lc -lisamstub" + FOPTIMFLAGS='-O +Oconservative' + FDEBUGFLAGS='-g' +# + if [ "$ffiles" = "1" ]; then + LD='cc' + else + LD="$COMPILER" + fi + LDEXTENSION='.mexhpux' + LDFLAGS="-b -Wl,+e,mexVersion,+e,mexFunction,+e,mexfunction,+e,mexLibrary,+e,_shlInit $COMPFLAGS" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + glnx86) +#---------------------------------------------------------------------------- + RPATH="-Wl,-rpath-link,$TMW_ROOT/bin/$Arch" +# gcc -v +# gcc version 3.2.3 + CC='gcc' +# mexopts_v704.sh change: + CFLAGS='-fPIC -D_GNU_SOURCE -pthread -fexceptions -m32' +# was: +# CFLAGS='-fPIC -ansi -D_GNU_SOURCE -pthread -fexceptions -m32' + CLIBS="$RPATH $MLIBS -lm -lstdc++" + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' +# +# g++ -v +# gcc version 3.2.3 + CXX='g++' + CXXFLAGS='-fPIC -ansi -D_GNU_SOURCE -pthread ' + CXXLIBS="$RPATH $MLIBS -lm" + CXXOPTIMFLAGS='-O3 -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# g77 -fversion +# GNU Fortran (GCC 3.2.3) 3.2.3 20030422 (release) +# NOTE: g77 is not thread safe + FC='g77' + FFLAGS='-fPIC -fexceptions' + FLIBS="$RPATH $MLIBS -lm -lstdc++" + FOPTIMFLAGS='-O3' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDEXTENSION='.mexglx' + LDFLAGS="-pthread -shared -m32 -Wl,--version-script,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O3' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + glnxi64) +#---------------------------------------------------------------------------- +echo "Error: Did not imbed 'options.sh' code"; exit 1 #imbed options.sh glnxi64 12 +#---------------------------------------------------------------------------- + ;; + glnxa64) +#---------------------------------------------------------------------------- + RPATH="-Wl,-rpath-link,$TMW_ROOT/bin/$Arch" +# gcc -v +# gcc version 3.2.3 + CC='gcc' + CFLAGS='-fPIC -fno-omit-frame-pointer -std=c99 -D_GNU_SOURCE -pthread -fexceptions' + CLIBS="$RPATH $MLIBS -lm -lstdc++" + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' +# +# g++ -v +# gcc version 3.2.3 + CXX='g++' + CXXFLAGS='-fPIC -fno-omit-frame-pointer -ansi -D_GNU_SOURCE -pthread ' + CXXLIBS="$RPATH $MLIBS -lm" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# g77 -fversion +# GNU Fortran (GCC 3.2.3) 3.2.3 20030422 (release) +# NOTE: g77 is not thread safe + FC='g77' + FFLAGS='-fPIC -fno-omit-frame-pointer -fexceptions' + FLIBS="$RPATH $MLIBS -lm -lstdc++" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDEXTENSION='.mexa64' + LDFLAGS="-pthread -shared -Wl,--version-script,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + + x86_64) +#---------------------------------------------------------------------------- + RPATH="-Wl,-rpath-link,$TMW_ROOT/bin/$Arch" +# gcc -v +# gcc version 3.2.3 + CC='gcc' + CFLAGS='-fPIC -fno-omit-frame-pointer -ansi -D_GNU_SOURCE -pthread -fexceptions -std=c100' + CLIBS="$RPATH $MLIBS -lm -lstdc++" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' +# +# g++ -v +# gcc version 3.2.3 + CXX='g++' + CXXFLAGS='-fPIC -fno-omit-frame-pointer -ansi -D_GNU_SOURCE -pthread ' + CXXLIBS="$RPATH $MLIBS -lm" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# g77 -fversion +# GNU Fortran (GCC 3.2.3) 3.2.3 20030422 (release) +# NOTE: g77 is not thread safe + FC='g77' + FFLAGS='-fPIC -fno-omit-frame-pointer -fexceptions' + FLIBS="$RPATH $MLIBS -lm -lstdc++" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDEXTENSION='.mexa64' + LDFLAGS="-pthread -shared -Wl,--version-script,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + + sol2) +#---------------------------------------------------------------------------- +# cc -V +# Sun C 5.5 Patch 112760-06 2004/01/13 + CC='cc' +# mexopts_v704.sh change: + CFLAGS='-v -KPIC -dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt' +# was: +# CFLAGS='-KPIC -dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt' + CLIBS="$MLIBS -lm -lc" + COPTIMFLAGS='-xO3 -xlibmil -DNDEBUG' + CDEBUGFLAGS='-xs -g' +# +# CC -V +# Sun C++ 5.5 Patch 113817-05 2004/01/13 + CXX='CC -compat=5' + CCV=`CC -V 2>&1` + version=`expr "$CCV" : '.*\([0-9][0-9]*\)\.'` + if [ "$version" = "4" ]; then + echo "SC5.0 or later C++ compiler is required" + fi + CXXFLAGS='-KPIC -dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt' + CXXLIBS="$MLIBS -lm -lCstd -lCrun" + CXXOPTIMFLAGS='-xO3 -xlibmil -DNDEBUG' + CXXDEBUGFLAGS='-xs -g' +# +# f90 -V +# Sun Fortran 95 7.1 Patch 112762-09 2004/01/26 + FC='f90' + FFLAGS='-KPIC -dalign -mt' + FLIBS="$MLIBS -lfui -lfsu -lsunmath -lm -lc" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-xs -g' +# + LD="$COMPILER" + LDEXTENSION='.mexsol' + LDFLAGS="-G -mt -M$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-xs -g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + mac) +#---------------------------------------------------------------------------- +# gcc-3.3 -v +# gcc version 3.3 20030304 (Apple Computer, Inc. build 1435) + CC='gcc-3.3' + CFLAGS='-fno-common -no-cpp-precomp -fexceptions' + CLIBS="$MLIBS -lstdc++" + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' +# +# g++-3.3 -v +# gcc version 3.3 20030304 (Apple Computer, Inc. build 1435) + CXX=g++-3.3 + CXXFLAGS='-fno-common -no-cpp-precomp -fexceptions' + CXXLIBS="$MLIBS -lstdc++" + CXXOPTIMFLAGS='-O3 -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# f77 -V +# FORTRAN 77 Compiler 8.2a + FC='f77' + FFLAGS='-f -N15 -N11 -s -Q51 -W' + ABSOFTLIBDIR=`which $FC | sed -n -e '1s|bin/'$FC'|lib|p'` + FLIBS="-L$ABSOFTLIBDIR -lfio -lf77math" + FOPTIMFLAGS='-O -cpu:g4' + FDEBUGFLAGS='-g' +# + LD="$CC" + LDEXTENSION='.mexmac' + LDFLAGS="-bundle -Wl,-flat_namespace -undefined suppress -Wl,-exported_symbols_list,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + esac +############################################################################# +# +# Architecture independent lines: +# +# Set and uncomment any lines which will apply to all architectures. +# +#---------------------------------------------------------------------------- +# CC="$CC" +# CFLAGS="$CFLAGS" +# COPTIMFLAGS="$COPTIMFLAGS" +# CDEBUGFLAGS="$CDEBUGFLAGS" +# CLIBS="$CLIBS" +# +# FC="$FC" +# FFLAGS="$FFLAGS" +# FOPTIMFLAGS="$FOPTIMFLAGS" +# FDEBUGFLAGS="$FDEBUGFLAGS" +# FLIBS="$FLIBS" +# +# LD="$LD" +# LDFLAGS="$LDFLAGS" +# LDOPTIMFLAGS="$LDOPTIMFLAGS" +# LDDEBUGFLAGS="$LDDEBUGFLAGS" +#---------------------------------------------------------------------------- +############################################################################# Index: /issm/trunk/etc/mexopts_v76.sh =================================================================== --- /issm/trunk/etc/mexopts_v76.sh (revision 1) +++ /issm/trunk/etc/mexopts_v76.sh (revision 1) @@ -0,0 +1,367 @@ +# +# +# gccopts_v75.sh: +# +# modifications to gccopts.sh as follows: +# +# specify gcc version 4x, added "-D__GCC4BUILD__" +# to act as flag in include/matlab_includes.h to identify whether or not +# mwIndex, mwSize have been defined. +# +# note: searching on "gccopts_v75.sh" will take you to the changes + +## +# mexopts.sh Shell script for configuring MEX-file creation script, +# mex. These options were tested with the specified compiler. +# +# usage: Do not call this file directly; it is sourced by the +# mex shell script. Modify only if you don't like the +# defaults after running mex. No spaces are allowed +# around the '=' in the variable assignment. +# +# Note: For the version of system compiler supported with this release, +# refer to Technical Note 1601 at: +# http://www.mathworks.com/support/tech-notes/1600/1601.html +# +# +# SELECTION_TAGs occur in template option files and are used by MATLAB +# tools, such as mex and mbuild, to determine the purpose of the contents +# of an option file. These tags are only interpreted when preceded by '#' +# and followed by ':'. +# +#SELECTION_TAG_MEX_OPT: Template Options file for building MEX-files via the system ANSI compiler +# +# Copyright 1984-2007 The MathWorks, Inc. +# $Revision: 1.2 $ $Date: 2009/03/18 13:57:38 $ +#---------------------------------------------------------------------------- +# + TMW_ROOT="$MATLAB" + MFLAGS='' + if [ "$ENTRYPOINT" = "mexLibrary" ]; then + MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmat -lmwservices -lut" + else + MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmat" + fi + case "$Arch" in + Undetermined) +#---------------------------------------------------------------------------- +# Change this line if you need to specify the location of the MATLAB +# root directory. The script needs to know where to find utility +# routines so that it can determine the architecture; therefore, this +# assignment needs to be done while the architecture is still +# undetermined. +#---------------------------------------------------------------------------- + MATLAB="$MATLAB" + ;; + glnx86) +#---------------------------------------------------------------------------- + RPATH="-Wl,-rpath-link,$TMW_ROOT/bin/$Arch" + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc' + CFLAGS='-ansi -D_GNU_SOURCE' + CFLAGS="$CFLAGS -fPIC -pthread -m32" + CFLAGS="$CFLAGS -fexceptions" + CFLAGS="$CFLAGS -D_FILE_OFFSET_BITS=64" + CLIBS="$RPATH $MLIBS -lm" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' + CLIBS="$CLIBS -lstdc++" +# + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX='g++' + CXXFLAGS='-ansi -D_GNU_SOURCE' + CXXFLAGS="$CXXFLAGS -D_FILE_OFFSET_BITS=64" + CXXFLAGS="$CXXFLAGS -fPIC -pthread" + CXXLIBS="$RPATH $MLIBS -lm" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# +# + # FortrankeyName: g95 + # FortrankeyManufacturer: GNU + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='g95' + FFLAGS='-fexceptions' + FFLAGS="$FFLAGS -fPIC" + FLIBS="$RPATH $MLIBS -lm" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDEXTENSION='.mexglx' + LDFLAGS="-pthread -shared -m32 -Wl,--version-script,$TMW_ROOT/extern/lib/$Arch/$MAPFILE -Wl,--no-undefined" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + glnxa64) +#---------------------------------------------------------------------------- + RPATH="-Wl,-rpath-link,$TMW_ROOT/bin/$Arch" + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc' + CFLAGS='-fPIC -fno-omit-frame-pointer -std=c99 -D_GNU_SOURCE -pthread -fexceptions -D__GCC4BUILD__ -largeArrayDims' + CLIBS="$RPATH $MLIBS -lm" + COPTIMFLAGS='-O -DNDEBUG' + CDEBUGFLAGS='-g' + CLIBS="$CLIBS -lstdc++" +# + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX='g++' + CXXFLAGS='-ansi -D_GNU_SOURCE' + CXXFLAGS="$CXXFLAGS -fPIC -fno-omit-frame-pointer -pthread" + CXXLIBS="$RPATH $MLIBS -lm" + CXXOPTIMFLAGS='-O -DNDEBUG' + CXXDEBUGFLAGS='-g' +# + # FortrankeyName: g95 + # FortrankeyManufacturer: GNU + # FortrankeyLanguage: Fortran + # FortrankeyVersion: +# + FC='g95' + FFLAGS='-fexceptions' + FFLAGS="$FFLAGS -fPIC -fno-omit-frame-pointer" + FLIBS="$RPATH $MLIBS -lm" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$COMPILER" + LDEXTENSION='.mexa64' + LDFLAGS="-pthread -shared -Wl,--version-script,$TMW_ROOT/extern/lib/$Arch/$MAPFILE -Wl,--no-undefined" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + sol64) +#---------------------------------------------------------------------------- + # StorageVersion: 1.0 + # CkeyName: Sun Studio + # CkeyManufacturer: Sun + # CkeyLanguage: C + # CkeyVersion: + CC='cc -xarch=v9a' + CFLAGS='-dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt' + CFLAGS="$CFLAGS -KPIC" + CLIBS="$MLIBS -lm" + CLIBS="$CLIBS -lc" + COPTIMFLAGS='-xO3 -xlibmil -DNDEBUG' + CDEBUGFLAGS='-xs -g' +# + # C++keyName: Sun Studio + # C++keyManufacturer: Sun + # C++keyLanguage: C++ + # C++keyVersion: + CXX='CC -xarch=v9a -compat=5' + CCV=`CC -xarch=v9a -V 2>&1` + version=`expr "$CCV" : '.*\([0-9][0-9]*\)\.'` + if [ "$version" = "4" ]; then + echo "SC5.0 or later C++ compiler is required" + fi + CXXFLAGS='-dalign -xlibmieee -D__EXTENSIONS__ -library=stlport4,Crun' + CXXFLAGS="$CXXFLAGS -D_POSIX_C_SOURCE=199506L -mt" + CXXFLAGS="$CXXFLAGS -KPIC -norunpath" + CXXLIBS="$MLIBS -lm" + CXXOPTIMFLAGS='-xO3 -xlibmil -DNDEBUG' + CXXDEBUGFLAGS='-xs -g' +# + # FortrankeyName: Sun Studio + # FortrankeyManufacturer: Sun + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='f90 -xarch=v9a' + FFLAGS='-dalign' + FFLAGS="$FFLAGS -KPIC -mt" + FLIBS="$MLIBS -lfui -lfsu -lsunmath -lm -lc" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-xs -g' +# + LD="$COMPILER" + LDEXTENSION='.mexs64' + LDFLAGS="-G -mt -M$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-xs -g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + mac) +#---------------------------------------------------------------------------- + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc-4.0' + CFLAGS='-fno-common -no-cpp-precomp' + CFLAGS="$CFLAGS" + CLIBS="$MLIBS" + COPTIMFLAGS='-O3 -fno-loop-optimize -DNDEBUG' + CDEBUGFLAGS='-g' +# + CLIBS="$CLIBS -lstdc++" + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX=g++-4.0 + CXXFLAGS='-fno-common -no-cpp-precomp -fexceptions -arch ppc' + CXXLIBS="$MLIBS -lstdc++" + CXXOPTIMFLAGS='-O3 -fno-loop-optimize -DNDEBUG' + CXXDEBUGFLAGS='-g' +# + # FortrankeyName: g95 + # FortrankeyManufacturer: GNU + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='g95' + FFLAGS='-fexceptions' + FC_LIBDIR=`$FC -print-file-name=libf95.a 2>&1 | sed -n '1s/\/*libf95\.a//p'` + FLIBS="$MLIBS -L$FC_LIBDIR -lf95" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$CC" + LDEXTENSION='.mexmac' + LDFLAGS='-Wl,-flat_namespace -undefined suppress' + LDFLAGS="$LDFLAGS -bundle -Wl,-exported_symbols_list,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + maci) +#---------------------------------------------------------------------------- + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc-4.0' + CFLAGS='-fno-common -no-cpp-precomp' + CFLAGS="$CFLAGS -fexceptions" + CLIBS="$MLIBS" + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' +# + CLIBS="$CLIBS -lstdc++" + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX=g++-4.0 + CXXFLAGS='-fno-common -no-cpp-precomp -fexceptions -arch i386' + CXXLIBS="$MLIBS -lstdc++" + CXXOPTIMFLAGS='-O3 -DNDEBUG' + CXXDEBUGFLAGS='-g' +# + # FortrankeyName: g95 + # FortrankeyManufacturer: GNU + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='g95' + FFLAGS='-fexceptions' + FC_LIBDIR=`$FC -print-file-name=libf95.a 2>&1 | sed -n '1s/\/*libf95\.a//p'` + FLIBS="$MLIBS -L$FC_LIBDIR -lf95" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$CC" + LDEXTENSION='.mexmaci' + LDFLAGS='-Wl,-flat_namespace -undefined suppress' + LDFLAGS="$LDFLAGS -bundle -Wl,-exported_symbols_list,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + maci64) +#---------------------------------------------------------------------------- + # StorageVersion: 1.0 + # CkeyName: GNU C + # CkeyManufacturer: GNU + # CkeyLanguage: C + # CkeyVersion: + CC='gcc-4.0' + CFLAGS='-fno-common -no-cpp-precomp -fexceptions -arch x86_64' + CLIBS="$MLIBS -lstdc++" + COPTIMFLAGS='-O3 -DNDEBUG' + CDEBUGFLAGS='-g' +# + # C++keyName: GNU C++ + # C++keyManufacturer: GNU + # C++keyLanguage: C++ + # C++keyVersion: + CXX=g++-4.0 + CXXFLAGS='-fno-common -no-cpp-precomp -fexceptions -arch x86_64' + CXXLIBS="$MLIBS -lstdc++" + CXXOPTIMFLAGS='-O3 -DNDEBUG' + CXXDEBUGFLAGS='-g' +# + # FortrankeyName: Intel Fortran + # FortrankeyManufacturer: Intel + # FortrankeyLanguage: Fortran + # FortrankeyVersion: + FC='ifort' + FFLAGS='' + FC_LIBDIR='' + FLIBS="$MLIBS" + FOPTIMFLAGS='-O' + FDEBUGFLAGS='-g' +# + LD="$CC" + LDEXTENSION='.mexmaci64' + LDFLAGS='-Wl,-twolevel_namespace -undefined error -arch x86_64' + LDFLAGS="$LDFLAGS -bundle -Wl,-exported_symbols_list,$TMW_ROOT/extern/lib/$Arch/$MAPFILE" + LDOPTIMFLAGS='-O' + LDDEBUGFLAGS='-g' +# + POSTLINK_CMDS=':' +#---------------------------------------------------------------------------- + ;; + esac +############################################################################# +# +# Architecture independent lines: +# +# Set and uncomment any lines which will apply to all architectures. +# +#---------------------------------------------------------------------------- +# CC="$CC" +# CFLAGS="$CFLAGS" +# COPTIMFLAGS="$COPTIMFLAGS" +# CDEBUGFLAGS="$CDEBUGFLAGS" +# CLIBS="$CLIBS" +# +# FC="$FC" +# FFLAGS="$FFLAGS" +# FOPTIMFLAGS="$FOPTIMFLAGS" +# FDEBUGFLAGS="$FDEBUGFLAGS" +# FLIBS="$FLIBS" +# +# LD="$LD" +# LDFLAGS="$LDFLAGS" +# LDOPTIMFLAGS="$LDOPTIMFLAGS" +# LDDEBUGFLAGS="$LDDEBUGFLAGS" +#---------------------------------------------------------------------------- +############################################################################# Index: /issm/trunk/etc/platforms/cosmos/Make_config.mk =================================================================== --- /issm/trunk/etc/platforms/cosmos/Make_config.mk (revision 1) +++ /issm/trunk/etc/platforms/cosmos/Make_config.mk (revision 1) @@ -0,0 +1,235 @@ + +# +# Make_config.mk +# + + +ifeq ($(MAKELEVEL),0) + + # run only if top-level make: + SHELL = /bin/sh + + # command-line args, defaults: + + ifdef VER + version = $(VER) + else + version = 5 + endif + + ifdef CLUSTER + cluster = $(CLUSTER) + else + cluster = 0 + endif + + ifdef BATCH + batch = $(BATCH) + else + batch = 0 + endif + + + + ifdef PLATFORM + platform = $(PLATFORM) + else + platform = sun + endif + + ifdef COMPILER + compiler = $(COMPILER) + endif + + ifdef COMPUTLIB + computlib = $(COMPUTLIB) + endif + + ifdef THREAD + thread = $(THREAD) + endif + + ifdef MEMORYMANAGER + memmgr = $(MEMORYMANAGER) + else + memmgr = 0 + endif + + supported = no + + # branch accordingly: + + ifeq ($(version),5) + MROOT = /opt/cots/matlab/5.3.1 + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v5.sh + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),6) + MROOT = /opt/cots/matlab/6.5 + MOPTS = -V5 + ifeq ($(platform),sun) + supported = yes + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v651.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),7) + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MROOT = /opt/cots/matlab/7.0.4 + MOPTS += -f ../mexopts_v704.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + ifeq (lin,$(findstring lin,$(platform))) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexglx + MROOT = /usr/local/matlab + MOPTS += -f ../mexopts_v704.sh -V5 + ifeq ($(compiler),icc) + CC = icc + #CFLAGS += -static #needed for any intel compilation. + else + CC = gcc + endif + CFLAGS += -D_LINUX_ + PETSCROOT += /scratch/larour/libraries_tier2_ice/petsc-2.3.3-p15 + PETSCARCH += linux-gnu + endif + ifeq (win,$(findstring win,$(platform))) + ifeq ($(compiler),borland) + supported = yes + OBJ_EXT = obj + LIB_EXT = LIB + ifeq ($(cluster),1) + OBJ_EXT = sobj + LIB_EXT = sLIB + endif + ifeq ($(batch),1) + OBJ_EXT = bobj + LIB_EXT = bLIB + endif + MEX_EXT = mexw32 + #MROOT = C:/MATLAB704 + MROOT = C:/MATLAB/R2006b + MBIN = $(MROOT)/bin/win32 + MEX = $(MBIN)/mex.bat + MOPTS = -f $(MBIN)/mexopts/bcc55opts.bat -V5 + CC = C:/Program\ Files/Borland/Cbuilder6/Bin/bcc32 + CFLAGS += -D_WIN_ + endif + endif + endif + + # if not yet assigned, set remaining defaults: + + ifndef MBIN + MBIN = $(MROOT)/bin + endif + + ifndef MEX + MEX = $(MBIN)/mex + endif + + ifeq ($(cluster),0) + ifndef MINCLUDE + MINCLUDE = $(MROOT)/extern/include + endif + endif + + ifeq ($(memmgr),1) + CFLAGS += -D_MEMMGR_ + endif + + + # for verbose build: + #MOPTS += -v + + CFLAGS += -I$(MINCLUDE) + + CFLAGS += -DMATLAB + + # define flags for computational libraries. + ifeq (metis,$(findstring metis,$(computlib))) + METISDIR=/scratch/larour/libraries_tier2_ice/metis-4.0/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + endif + + ifeq (petsc,$(findstring petsc,$(computlib))) + CFLAGS += -I$(PETSCROOT) -I$(PETSCROOT)/include/ -I$(PETSCROOT)/bmake/$(PETSCARCH) + CFLAGS += -D_PETSC_ + COMPUTLIBS+= -L$(PETSCROOT)/lib/$(PETSCARCH)/ -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts + endif + + ifeq (standard,$(findstring standard,$(computlib))) + CFLAGS += -D_STANDARD_ + #No need to define COMPUTLIBS: we are using our "home" made routines. + endif + + # activate thread compilation if necessary. + ifeq ($(thread),yes) + CFLAGS += -D_THREAD_ + endif + + # gcc build + #GCCOPTS = gccopts.sh + #CC = gcc + + #define libraries that need to be linked with all the mex modules + + ifeq ($(cluster),0) #we are building mex module only serially, not on a cluster on in batch mode + LIBS = ../Cielo.$(LIB_EXT) + endif +endif Index: /issm/trunk/etc/platforms/cosmos/Make_server_config.mk =================================================================== --- /issm/trunk/etc/platforms/cosmos/Make_server_config.mk (revision 1) +++ /issm/trunk/etc/platforms/cosmos/Make_server_config.mk (revision 1) @@ -0,0 +1,128 @@ +#Server Makefile configuration. + +ifeq ($(cluster),1) + + #Add some strict compiling + #CFLAGS += -Werror-implicit-function-declaration + + #Undefine matlab if already defined. + CFLAGS+= -UMATLAB + + ifdef MPILAUNCH + mpilaunch = $(MPILAUNCH) + else + mpilaunch= mpi + endif + + ifeq ($(mpilaunch),bsub) + CFLAGS += -D_BSUB_ + endif + ifeq ($(mpilaunch),mpi) + CFLAGS += -D_MPI_ + endif + + #MPIIO flags: + CFLAGS += -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -D_LARGEFILE_SOURCE=1 -D_USE_LUSTRE_ + #CFLAGS += -D_FILE_OFFSET_BITS=64 + + #Server flags + #CFLAGS += -fno-strict-aliasing -funroll-loops -g3 -D_SERVER_ -O3 + CFLAGS += -fno-strict-aliasing -D_SERVER_ -O3 + #CFLAGS += -Wall + + #Cluster flags: + MPIROOT=/opt/mpich/gm/intel8.0 + CC=$(MPIROOT)/bin/mpicc + + CFLAGS += -D_CLUSTER_ -I$(MPIROOT)/include + + COMPUTLIBS += -L$(MPIROOT)/lib -lfmpich -lmpich + + + #SLEPC Definitions + ifeq (slepc,$(findstring slepc,$(computlib))) + SLEPCDIR=/scratch/larour/libraries_tier2_ice/slepc-2.3.3 + + CFLAGS += -I$(SLEPCDIR)/include + + COMPUTLIBS += $(SLEPCDIR)/lib/$(PETSCARCH)/libslepc.a + #COMPUTLIBS += -L$(SLEPCDIR)/lib/$(PETSCARCH) -lslepc + endif + + + #PLAPACK Definitions. + ifeq (plapack,$(findstring plapack,$(computlib))) + PLAPACKDIR=$(PETSCROOT)/externalpackages/PLAPACKR32 + #We need also Petsc Plapack prototypes found in $PETSCROOT)/src/mat/impls/dense/mpi/plapack/PLA_prototypes.h + + CFLAGS += -I$(PLAPACKDIR)/INCLUDE -I$(PETSCROOT)/src/mat/impls/dense/mpi/plapack/ + + COMPUTLIBS += -L$(PLAPACKDIR)/$(PETSCARCH) -lPLAPACK + endif + + #MUMPS Definitions. + ifeq (mumps,$(findstring mumps,$(computlib))) + MUMPSDIR=$(PETSCROOT)/externalpackages/MUMPS_4.7.3/ + + CFLAGS += -I$(MUMPSDIR)/include + + COMPUTLIBS += -L$(MUMPSDIR)/$(PETSCARCH)/lib -ldmumps -lcmumps -lpord + endif + + #PETSC Definitions: + ifeq (petsc,$(findstring petsc,$(computlib))) + #LAPACK and BLAS definitions needed for MPI use of Petsc. + #FBLASLAPACKDIR=$(PETSCROOT)/externalpackages/fblaslapack/$(PETSCARCH) + #COMPUTLIBS += -L$(FBLASLAPACKDIR) -lflapack -lfblas + FBLASLAPACKDIR=/opt/intel/mkl/8.0/lib/32 + COMPUTLIBS += $(FBLASLAPACKDIR)/libmkl_lapack.a $(FBLASLAPACKDIR)/libmkl_ia32.a $(FBLASLAPACKDIR)/libmkl_def.so -L$(FBLASLAPACKDIR) -lguide -lpthread + #COMPUTLIBS += -Wl,-rpath,$(FBLASLAPACKDIR) -L$(FBLASLAPACKDIR) -lmkl_lapack32 -lmkl_def -lguide -lpthread + endif + + #SCALAPACK Definitions + ifeq (scalapack,$(findstring scalapack,$(computlib))) + #SCALAPACKDIR=/home/larour/SCALAPACK + SCALAPACKDIR=$(PETSC_DIR)/externalpackages/SCALAPACK/linux-gnu + #We need BLACS to work with Scalapack + #BLACSDIR=/home/larour/BLACS/LIB + BLACSDIR=$(PETSC_DIR)/externalpackages/blacs-dev/linux-gnu + + COMPUTLIBS += -L$(SCALAPACKDIR) -lscalapack + #COMPUTLIBS += $(BLACSDIR)/blacsF77init_MPI-LINUX-0.a $(BLACSDIR)/blacs_MPI-LINUX-0.a $(BLACSDIR)/blacsCinit_MPI-LINUX-0.a + COMPUTLIBS += -L$(BLACSDIR) -lblacs + + + + endif + + #Metis definitions + METISDIR=/scratch/larour/libraries_tier2_ice/metis-4.0/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + + #Super lu + SUPERLUDIR=$(PETSC_DIR)/externalpackages/SuperLU_DIST_2.0-Jan_5_2006/$(PETSCARCH)/ + COMPUTLIBS += -L$(SUPERLUDIR) -lsuperlu_dist_2.0 + + #Spooles + + SPOOLESDIR=$(PETSC_DIR)/externalpackages/spooles-2.2/$(PETSCARCH) + COMPUTLIBS += -L$(SPOOLESDIR) -lspooles + SPOOLESDIR2=$(PETSC_DIR)/externalpackages/spooles-2.2/$(PETSCARCH)/MPI/src + COMPUTLIBS += -L$(SPOOLESDIR2) -lspoolesMPI + + + #Extra definitions + #G2CDIR=/lib/ssa/gcc-lib/i386-redhat-linux-gnu/3.5-tree-ssa + #G2CDIR=/usr/lib/gcc-lib/i386-redhat-linux/3.2.2/ + FORTRANDIR=/opt/intel/compilers/ifort_8.0.046/lib + + #COMPUTLIBS += -lnsl -lrt -L/usr/X11R6/lib -lX11 -L$(G2CDIR) -lg2c -L$(FORTRANDIR) -lifcore -lpetsc + COMPUTLIBS += -lnsl -lrt -L/usr/X11R6/lib -lX11 -L$(FORTRANDIR) -lifcore -lpetsc $(MPIROOT)/lib/libmpich.a + +endif + +ifeq ($(batch),1) +#Add _BATCH_ flag to compilation +CFLAGS+= -D_BATCH_ +endif Index: /issm/trunk/etc/platforms/cosmos/modinit =================================================================== --- /issm/trunk/etc/platforms/cosmos/modinit (revision 1) +++ /issm/trunk/etc/platforms/cosmos/modinit (revision 1) @@ -0,0 +1,3 @@ +module add intel_mkl80 +module add intel-ifort-compiler.8.1.019 +module add intel-icc-compiler.8.1.022 Index: /issm/trunk/etc/platforms/gemini/gnu/Make_config.mk =================================================================== --- /issm/trunk/etc/platforms/gemini/gnu/Make_config.mk (revision 1) +++ /issm/trunk/etc/platforms/gemini/gnu/Make_config.mk (revision 1) @@ -0,0 +1,235 @@ + +# +# Make_config.mk +# + + +ifeq ($(MAKELEVEL),0) + + # run only if top-level make: + SHELL = /bin/sh + + # command-line args, defaults: + + ifdef VER + version = $(VER) + else + version = 5 + endif + + ifdef CLUSTER + cluster = $(CLUSTER) + else + cluster = 0 + endif + + ifdef BATCH + batch = $(BATCH) + else + batch = 0 + endif + + + + ifdef PLATFORM + platform = $(PLATFORM) + else + platform = sun + endif + + ifdef COMPILER + compiler = $(COMPILER) + endif + + ifdef COMPUTLIB + computlib = $(COMPUTLIB) + endif + + ifdef THREAD + thread = $(THREAD) + endif + + ifdef MEMORYMANAGER + memmgr = $(MEMORYMANAGER) + else + memmgr = 0 + endif + + supported = no + + # branch accordingly: + + ifeq ($(version),5) + MROOT = /opt/cots/matlab/5.3.1 + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v5.sh + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),6) + MROOT = /opt/cots/matlab/6.5 + MOPTS = -V5 + ifeq ($(platform),sun) + supported = yes + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v651.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),7) + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MROOT = /opt/cots/matlab/7.0.4 + MOPTS += -f ../mexopts_v704.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + ifeq (lin,$(findstring lin,$(platform))) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexglx + MROOT = /usr/local/matlab + MOPTS += -f ../mexopts_v704.sh -V5 + ifeq ($(compiler),icc) + CC = icc + #CFLAGS += -static #needed for any intel compilation. + else + CC = gcc + endif + CFLAGS += -D_LINUX_ + PETSCROOT += /home/larour/Libraries/petsc-2.3.2-p10 + PETSCARCH += linux-gnu-ia64 + endif + ifeq (win,$(findstring win,$(platform))) + ifeq ($(compiler),borland) + supported = yes + OBJ_EXT = obj + LIB_EXT = LIB + ifeq ($(cluster),1) + OBJ_EXT = sobj + LIB_EXT = sLIB + endif + ifeq ($(batch),1) + OBJ_EXT = bobj + LIB_EXT = bLIB + endif + MEX_EXT = mexw32 + #MROOT = C:/MATLAB704 + MROOT = C:/MATLAB/R2006b + MBIN = $(MROOT)/bin/win32 + MEX = $(MBIN)/mex.bat + MOPTS = -f $(MBIN)/mexopts/bcc55opts.bat -V5 + CC = C:/Program\ Files/Borland/Cbuilder6/Bin/bcc32 + CFLAGS += -D_WIN_ + endif + endif + endif + + # if not yet assigned, set remaining defaults: + + ifndef MBIN + MBIN = $(MROOT)/bin + endif + + ifndef MEX + MEX = $(MBIN)/mex + endif + + ifeq ($(cluster),0) + ifndef MINCLUDE + MINCLUDE = $(MROOT)/extern/include + endif + endif + + ifeq ($(memmgr),1) + CFLAGS += -D_MEMMGR_ + endif + + + # for verbose build: + #MOPTS += -v + + CFLAGS += -I$(MINCLUDE) + + CFLAGS += -DMATLAB + + # define flags for computational libraries. + ifeq (metis,$(findstring metis,$(computlib))) + METISDIR=/home/larour/Libraries/metis-4.0/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + endif + + ifeq (petsc,$(findstring petsc,$(computlib))) + CFLAGS += -I$(PETSCROOT) -I$(PETSCROOT)/include/ -I$(PETSCROOT)/bmake/$(PETSCARCH) + CFLAGS += -D_PETSC_ + COMPUTLIBS+= -L$(PETSCROOT)/lib/$(PETSCARCH)/ -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts + endif + + ifeq (standard,$(findstring standard,$(computlib))) + CFLAGS += -D_STANDARD_ + #No need to define COMPUTLIBS: we are using our "home" made routines. + endif + + # activate thread compilation if necessary. + ifeq ($(thread),yes) + CFLAGS += -D_THREAD_ + endif + + # gcc build + #GCCOPTS = gccopts.sh + #CC = gcc + + #define libraries that need to be linked with all the mex modules + + ifeq ($(cluster),0) #we are building mex module only serially, not on a cluster on in batch mode + LIBS = ../Cielo.$(LIB_EXT) + endif +endif Index: /issm/trunk/etc/platforms/gemini/gnu/Make_server_config.mk =================================================================== --- /issm/trunk/etc/platforms/gemini/gnu/Make_server_config.mk (revision 1) +++ /issm/trunk/etc/platforms/gemini/gnu/Make_server_config.mk (revision 1) @@ -0,0 +1,76 @@ +#Server Makefile configuration. + +ifeq ($(cluster),1) + + #Undefine matlab if already defined. + CFLAGS+= -UMATLAB -D_CLUSTER_ + + ifdef MPILAUNCH + mpilaunch = $(MPILAUNCH) + else + mpilaunch= mpi + endif + + ifeq ($(mpilaunch),bsub) + CFLAGS += -D_BSUB_ + endif + ifeq ($(mpilaunch),mpi) + CFLAGS += -D_MPI_ + endif + + #MPIIO flags: + CFLAGS += -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -D_LARGEFILE_SOURCE=1 -D_USE_LUSTRE_ + #CFLAGS += -D_FILE_OFFSET_BITS=64 + + #Server flags + CFLAGS += -fno-strict-aliasing -D_SERVER_ -O3 + + #MPI + COMPUTLIBS += -lmpi + + #SLEPC Definitions + ifeq (slepc,$(findstring slepc,$(computlib))) + SLEPCDIR=/home/larour/Libraries/slepc-2.3.2 + CFLAGS += -I$(SLEPCDIR)/include + #COMPUTLIBS += -L$(SLEPCDIR)/lib/$(PETSCARCH) -lslepc + endif + + + #PLAPACK Definitions. + ifeq (plapack,$(findstring plapack,$(computlib))) + PLAPACKDIR=$(PETSCROOT)/externalpackages/PLAPACKR32 + CFLAGS += -I$(PLAPACKDIR)/INCLUDE -I$(PETSCROOT)/src/mat/impls/dense/mpi/plapack/ + COMPUTLIBS += -L$(PLAPACKDIR)/$(PETSCARCH) -lPLAPACK + endif + + #MUMPS Definitions. + ifeq (mumps,$(findstring mumps,$(computlib))) + MUMPSDIR=$(PETSCROOT)/externalpackages/MUMPS_4.6.3/ + CFLAGS += -I$(MUMPSDIR)/include + COMPUTLIBS += -L$(MUMPSDIR)/$(PETSCARCH)/lib -ldmumps -lcmumps -lpord + endif + + #PETSC Definitions: + ifeq (petsc,$(findstring petsc,$(computlib))) + #LAPACK and BLAS definitions needed for MPI use of Petsc. + FBLASLAPACKDIR=$(PETSCROOT)/externalpackages/fblaslapack/$(PETSCARCH) + COMPUTLIBS += -L$(FBLASLAPACKDIR) -lflapack -lfblas + endif + + #SCALAPACK Definitions + ifeq (scalapack,$(findstring scalapack,$(computlib))) + SCALAPACKDIR=$(PETSC_DIR)/externalpackages/SCALAPACK/$(PETSC_ARCH) + BLACSDIR=$(PETSC_DIR)/externalpackages/blacs-dev/$(PETSC_ARCH) + + COMPUTLIBS += -L$(SCALAPACKDIR) -lscalapack -L$(BLACSDIR) -lblacs + endif + + #Extra definitions + COMPUTLIBS += -L/usr/X11R6/lib -lX11 -lgfortran + +endif + +ifeq ($(batch),1) +#Add _BATCH_ flag to compilation +CFLAGS+= -D_BATCH_ +endif Index: /issm/trunk/etc/platforms/gemini/intel/Make_config.mk =================================================================== --- /issm/trunk/etc/platforms/gemini/intel/Make_config.mk (revision 1) +++ /issm/trunk/etc/platforms/gemini/intel/Make_config.mk (revision 1) @@ -0,0 +1,235 @@ + +# +# Make_config.mk +# + + +ifeq ($(MAKELEVEL),0) + + # run only if top-level make: + SHELL = /bin/sh + + # command-line args, defaults: + + ifdef VER + version = $(VER) + else + version = 5 + endif + + ifdef CLUSTER + cluster = $(CLUSTER) + else + cluster = 0 + endif + + ifdef BATCH + batch = $(BATCH) + else + batch = 0 + endif + + + + ifdef PLATFORM + platform = $(PLATFORM) + else + platform = sun + endif + + ifdef COMPILER + compiler = $(COMPILER) + endif + + ifdef COMPUTLIB + computlib = $(COMPUTLIB) + endif + + ifdef THREAD + thread = $(THREAD) + endif + + ifdef MEMORYMANAGER + memmgr = $(MEMORYMANAGER) + else + memmgr = 0 + endif + + supported = no + + # branch accordingly: + + ifeq ($(version),5) + MROOT = /opt/cots/matlab/5.3.1 + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v5.sh + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),6) + MROOT = /opt/cots/matlab/6.5 + MOPTS = -V5 + ifeq ($(platform),sun) + supported = yes + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v651.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),7) + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MROOT = /opt/cots/matlab/7.0.4 + MOPTS += -f ../mexopts_v704.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + ifeq (lin,$(findstring lin,$(platform))) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexglx + MROOT = /usr/local/matlab + MOPTS += -f ../mexopts_v704.sh -V5 + ifeq ($(compiler),icc) + CC = icc + #CFLAGS += -static #needed for any intel compilation. + else + CC = gcc + endif + CFLAGS += -D_LINUX_ + PETSCROOT += /home/larour/Libraries/petsc-2.3.2-p10-intel + PETSCARCH += linux-gnu-ia64-intel + endif + ifeq (win,$(findstring win,$(platform))) + ifeq ($(compiler),borland) + supported = yes + OBJ_EXT = obj + LIB_EXT = LIB + ifeq ($(cluster),1) + OBJ_EXT = sobj + LIB_EXT = sLIB + endif + ifeq ($(batch),1) + OBJ_EXT = bobj + LIB_EXT = bLIB + endif + MEX_EXT = mexw32 + #MROOT = C:/MATLAB704 + MROOT = C:/MATLAB/R2006b + MBIN = $(MROOT)/bin/win32 + MEX = $(MBIN)/mex.bat + MOPTS = -f $(MBIN)/mexopts/bcc55opts.bat -V5 + CC = C:/Program\ Files/Borland/Cbuilder6/Bin/bcc32 + CFLAGS += -D_WIN_ + endif + endif + endif + + # if not yet assigned, set remaining defaults: + + ifndef MBIN + MBIN = $(MROOT)/bin + endif + + ifndef MEX + MEX = $(MBIN)/mex + endif + + ifeq ($(cluster),0) + ifndef MINCLUDE + MINCLUDE = $(MROOT)/extern/include + endif + endif + + ifeq ($(memmgr),1) + CFLAGS += -D_MEMMGR_ + endif + + + # for verbose build: + #MOPTS += -v + + CFLAGS += -I$(MINCLUDE) + + CFLAGS += -DMATLAB + + # define flags for computational libraries. + ifeq (metis,$(findstring metis,$(computlib))) + METISDIR=/home/larour/Libraries/metis-4.0-intel/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + endif + + ifeq (petsc,$(findstring petsc,$(computlib))) + CFLAGS += -I$(PETSCROOT) -I$(PETSCROOT)/include/ -I$(PETSCROOT)/bmake/$(PETSCARCH) + CFLAGS += -D_PETSC_ + COMPUTLIBS+= -L$(PETSCROOT)/lib/$(PETSCARCH)/ -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts + endif + + ifeq (standard,$(findstring standard,$(computlib))) + CFLAGS += -D_STANDARD_ + #No need to define COMPUTLIBS: we are using our "home" made routines. + endif + + # activate thread compilation if necessary. + ifeq ($(thread),yes) + CFLAGS += -D_THREAD_ + endif + + # gcc build + #GCCOPTS = gccopts.sh + #CC = gcc + + #define libraries that need to be linked with all the mex modules + + ifeq ($(cluster),0) #we are building mex module only serially, not on a cluster on in batch mode + LIBS = ../Cielo.$(LIB_EXT) + endif +endif Index: /issm/trunk/etc/platforms/gemini/intel/Make_server_config.mk =================================================================== --- /issm/trunk/etc/platforms/gemini/intel/Make_server_config.mk (revision 1) +++ /issm/trunk/etc/platforms/gemini/intel/Make_server_config.mk (revision 1) @@ -0,0 +1,76 @@ +#Server Makefile configuration. + +ifeq ($(cluster),1) + + #Undefine matlab if already defined. + CFLAGS+= -UMATLAB -D_CLUSTER_ + + ifdef MPILAUNCH + mpilaunch = $(MPILAUNCH) + else + mpilaunch= mpi + endif + + ifeq ($(mpilaunch),bsub) + CFLAGS += -D_BSUB_ + endif + ifeq ($(mpilaunch),mpi) + CFLAGS += -D_MPI_ + endif + + #MPIIO flags: + CFLAGS += -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -D_LARGEFILE_SOURCE=1 -D_USE_LUSTRE_ + #CFLAGS += -D_FILE_OFFSET_BITS=64 + + #Server flags + CFLAGS += -fno-strict-aliasing -D_SERVER_ -O3 + + #MPI + COMPUTLIBS += -lmpi + + #SLEPC Definitions + ifeq (slepc,$(findstring slepc,$(computlib))) + SLEPCDIR=/home/larour/Libraries/slepc-2.3.2-intel + CFLAGS += -I$(SLEPCDIR)/include + #COMPUTLIBS += -L$(SLEPCDIR)/lib/$(PETSCARCH) -lslepc + endif + + + #PLAPACK Definitions. + ifeq (plapack,$(findstring plapack,$(computlib))) + PLAPACKDIR=$(PETSCROOT)/externalpackages/PLAPACKR32 + CFLAGS += -I$(PLAPACKDIR)/INCLUDE -I$(PETSCROOT)/src/mat/impls/dense/mpi/plapack/ + COMPUTLIBS += -L$(PLAPACKDIR)/$(PETSCARCH) -lPLAPACK + endif + + #MUMPS Definitions. + ifeq (mumps,$(findstring mumps,$(computlib))) + MUMPSDIR=$(PETSCROOT)/externalpackages/MUMPS_4.6.3/ + CFLAGS += -I$(MUMPSDIR)/include + COMPUTLIBS += -L$(MUMPSDIR)/$(PETSCARCH)/lib -ldmumps -lcmumps -lpord + endif + + #PETSC Definitions: + ifeq (petsc,$(findstring petsc,$(computlib))) + #LAPACK and BLAS definitions needed for MPI use of Petsc. + FBLASLAPACKDIR=/opt/intel/mkl/9.1.023/lib/64 + COMPUTLIBS += -L$(FBLASLAPACKDIR) -lmkl_lapack -lmkl -lguide + endif + + #SCALAPACK Definitions + ifeq (scalapack,$(findstring scalapack,$(computlib))) + SCALAPACKDIR=$(PETSC_DIR)/externalpackages/SCALAPACK/$(PETSC_ARCH) + BLACSDIR=$(PETSC_DIR)/externalpackages/blacs-dev/$(PETSC_ARCH) + + COMPUTLIBS += -L$(SCALAPACKDIR) -lscalapack -L$(BLACSDIR) -lblacs + endif + + #Extra definitions + COMPUTLIBS += -L/usr/X11R6/lib -lX11 -L/opt/intel/fc/9.1.051/lib -lifcore + +endif + +ifeq ($(batch),1) +#Add _BATCH_ flag to compilation +CFLAGS+= -D_BATCH_ +endif Index: /issm/trunk/etc/platforms/mustang/Make_config.mk =================================================================== --- /issm/trunk/etc/platforms/mustang/Make_config.mk (revision 1) +++ /issm/trunk/etc/platforms/mustang/Make_config.mk (revision 1) @@ -0,0 +1,235 @@ + +# +# Make_config.mk +# + + +ifeq ($(MAKELEVEL),0) + + # run only if top-level make: + SHELL = /bin/sh + + # command-line args, defaults: + + ifdef VER + version = $(VER) + else + version = 5 + endif + + ifdef CLUSTER + cluster = $(CLUSTER) + else + cluster = 0 + endif + + ifdef BATCH + batch = $(BATCH) + else + batch = 0 + endif + + + + ifdef PLATFORM + platform = $(PLATFORM) + else + platform = sun + endif + + ifdef COMPILER + compiler = $(COMPILER) + endif + + ifdef COMPUTLIB + computlib = $(COMPUTLIB) + endif + + ifdef THREAD + thread = $(THREAD) + endif + + ifdef MEMORYMANAGER + memmgr = $(MEMORYMANAGER) + else + memmgr = 0 + endif + + supported = no + + # branch accordingly: + + ifeq ($(version),5) + MROOT = /opt/cots/matlab/5.3.1 + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v5.sh + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),6) + MROOT = /opt/cots/matlab/6.5 + MOPTS = -V5 + ifeq ($(platform),sun) + supported = yes + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v651.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),7) + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MROOT = /opt/cots/matlab/7.0.4 + MOPTS += -f ../mexopts_v704.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + ifeq (lin,$(findstring lin,$(platform))) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexglx + MROOT = /usr/local/matlab + MOPTS += -f ../mexopts_v704.sh -V5 + ifeq ($(compiler),icc) + CC = icc + CFLAGS += -static #needed for any intel compilation. + else + CC = gcc + endif + CFLAGS += -D_LINUX_ + PETSCROOT += /proj/ice/Libraries/linux/petsc-2.3.3-p15 + PETSCARCH += linux-gnu + endif + ifeq (win,$(findstring win,$(platform))) + ifeq ($(compiler),borland) + supported = yes + OBJ_EXT = obj + LIB_EXT = LIB + ifeq ($(cluster),1) + OBJ_EXT = sobj + LIB_EXT = sLIB + endif + ifeq ($(batch),1) + OBJ_EXT = bobj + LIB_EXT = bLIB + endif + MEX_EXT = mexw32 + #MROOT = C:/MATLAB704 + MROOT = C:/MATLAB/R2006b + MBIN = $(MROOT)/bin/win32 + MEX = $(MBIN)/mex.bat + MOPTS = -f $(MBIN)/mexopts/bcc55opts.bat -V5 + CC = C:/Program\ Files/Borland/Cbuilder6/Bin/bcc32 + CFLAGS += -D_WIN_ + endif + endif + endif + + # if not yet assigned, set remaining defaults: + + ifndef MBIN + MBIN = $(MROOT)/bin + endif + + ifndef MEX + MEX = $(MBIN)/mex + endif + + ifeq ($(cluster),0) + ifndef MINCLUDE + MINCLUDE = $(MROOT)/extern/include + endif + endif + + ifeq ($(memmgr),1) + CFLAGS += -D_MEMMGR_ + endif + + + # for verbose build: + #MOPTS += -v + + CFLAGS += -I$(MINCLUDE) + + CFLAGS += -DMATLAB + + # define flags for computational libraries. + ifeq (metis,$(findstring metis,$(computlib))) + METISDIR=/proj/ice/Libraries/linux/metis-4.0-matlab/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + endif + + ifeq (petsc,$(findstring petsc,$(computlib))) + CFLAGS += -I$(PETSCROOT) -I$(PETSCROOT)/include/ -I$(PETSCROOT)/bmake/$(PETSCARCH) + CFLAGS += -D_PETSC_ + COMPUTLIBS+= -L$(PETSCROOT)/lib/$(PETSCARCH)/ -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts + endif + + ifeq (standard,$(findstring standard,$(computlib))) + CFLAGS += -D_STANDARD_ + #No need to define COMPUTLIBS: we are using our "home" made routines. + endif + + # activate thread compilation if necessary. + ifeq ($(thread),yes) + CFLAGS += -D_THREAD_ + endif + + # gcc build + #GCCOPTS = gccopts.sh + #CC = gcc + + #define libraries that need to be linked with all the mex modules + + ifeq ($(cluster),0) #we are building mex module only serially, not on a cluster on in batch mode + LIBS = ../Cielo.$(LIB_EXT) + endif +endif Index: /issm/trunk/etc/platforms/mustang/Make_server_config.mk =================================================================== --- /issm/trunk/etc/platforms/mustang/Make_server_config.mk (revision 1) +++ /issm/trunk/etc/platforms/mustang/Make_server_config.mk (revision 1) @@ -0,0 +1,91 @@ +#Server Makefile configuration. + +ifeq ($(cluster),1) + + #Add some strict compiling + CFLAGS += -Werror-implicit-function-declaration + + #Undefine matlab if already defined. + CFLAGS+= -UMATLAB + + ifdef MPILAUNCH + mpilaunch = $(MPILAUNCH) + else + mpilaunch= mpi + endif + + ifeq ($(mpilaunch),bsub) + CFLAGS += -D_BSUB_ + endif + ifeq ($(mpilaunch),mpi) + CFLAGS += -D_MPI_ + endif + + #Server flags + CFLAGS += -fno-strict-aliasing -funroll-loops -g3 -D_SERVER_ -O3 + #CFLAGS += -Wall + + #Cluster flags: + MPIROOT=/proj/ice/Libraries/linux/mpich2-gnu + CC=$(MPIROOT)/bin/mpicc + + CFLAGS += -D_CLUSTER_ -I$(MPIROOT)/include + + COMPUTLIBS += -L$(MPIROOT) -lfmpich -lmpich -lmpichcxx + + #PETSC Definitions: + ifeq (petsc,$(findstring petsc,$(computlib))) + #LAPACK and BLAS definitions needed for MPI use of Petsc. + FBLASLAPACKDIR=$(PETSCROOT)/externalpackages/fblaslapack/$(PETSCARCH) + COMPUTLIBS += -L$(FBLASLAPACKDIR) -lflapack -lfblas + endif + + #SLEPC Definitions + ifeq (slepc,$(findstring slepc,$(computlib))) + SLEPCDIR=/proj/ice/Libraries/linux/slepc-2.3.3 + + CFLAGS += -I$(SLEPCDIR)/include + + #COMPUTLIBS += -L$(SLEPCDIR)/lib/$(PETSCARCH) -lslepc + endif + + #SCALAPACK Definitions + ifeq (scalapack,$(findstring scalapack,$(computlib))) + SCALAPACKDIR=/proj/ice/Libraries/linux/SCALAPACK/mpich2-gnu + #We need BLACS to work with Scalapack + BLACSDIR=/proj/ice/Libraries/linux/BLACS/LIB/mpich2-gnu + + COMPUTLIBS += -L$(SCALAPACKDIR) -lscalapack \ + -L$(BLACSDIR) -lblacsF77init_MPI-LINUX-0 -lblacs_MPI-LINUX-0 -lblacsCinit_MPI-LINUX-0 + endif + + #PLAPACK Definitions. + ifeq (plapack,$(findstring plapack,$(computlib))) + PLAPACKDIR=$(PETSCROOT)/externalpackages/PLAPACKR32 + #We need also Petsc Plapack prototypes found in $PETSCROOT)/src/mat/impls/dense/mpi/plapack/PLA_prototypes.h + + CFLAGS += -I$(PLAPACKDIR)/INCLUDE -I$(PETSCROOT)/src/mat/impls/dense/mpi/plapack/ + + COMPUTLIBS += -L$(PLAPACKDIR)/$(PETSCARCH) -lPLAPACK + endif + + #Metis definitions + METISDIR=/proj/ice/Libraries/linux/metis-4.0/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + + #Extra definitions + COMPUTLIBS += -lnsl -lrt -L/usr/X11R6/lib -lX11 -lg2c -lpetsc + + + COMPUTLIBS += -L/usr/local/g95/lib/gcc-lib/i686-pc-linux-gnu/4.0.3/ -lf95 + #Fortran defintions in case using different compiler (absoft) + #FORTRAN_DIR=/opt/absoft/ + #FORTRAN_LIBS= -lutil -lpthread -lfio -lU77 -lV77 -lf90math -lf77math -lf95math + +endif + +ifeq ($(batch),1) +#Add _BATCH_ flag to compilation +CFLAGS+= -D_BATCH_ +endif Index: /issm/trunk/etc/platforms/wilkes/704/Make_config.mk =================================================================== --- /issm/trunk/etc/platforms/wilkes/704/Make_config.mk (revision 1) +++ /issm/trunk/etc/platforms/wilkes/704/Make_config.mk (revision 1) @@ -0,0 +1,235 @@ + +# +# Make_config.mk +# + + +ifeq ($(MAKELEVEL),0) + + # run only if top-level make: + SHELL = /bin/sh + + # command-line args, defaults: + + ifdef VER + version = $(VER) + else + version = 5 + endif + + ifdef CLUSTER + cluster = $(CLUSTER) + else + cluster = 0 + endif + + ifdef BATCH + batch = $(BATCH) + else + batch = 0 + endif + + + + ifdef PLATFORM + platform = $(PLATFORM) + else + platform = sun + endif + + ifdef COMPILER + compiler = $(COMPILER) + endif + + ifdef COMPUTLIB + computlib = $(COMPUTLIB) + endif + + ifdef THREAD + thread = $(THREAD) + endif + + ifdef MEMORYMANAGER + memmgr = $(MEMORYMANAGER) + else + memmgr = 0 + endif + + supported = no + + # branch accordingly: + + ifeq ($(version),5) + MROOT = /opt/cots/matlab/5.3.1 + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v5.sh + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),6) + MROOT = /opt/cots/matlab/6.5 + MOPTS = -V5 + ifeq ($(platform),sun) + supported = yes + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v651.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),7) + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MROOT = /opt/cots/matlab/7.0.4 + MOPTS += -f ../mexopts_v704.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + ifeq (lin,$(findstring lin,$(platform))) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexa64 + MROOT = /usr/local/pkgs/matlab-7.4 + MOPTS += -f ../mexopts_v704.sh -V5 + ifeq ($(compiler),icc) + CC = icc + CFLAGS += -static #needed for any intel compilation. + else + CC = gcc + endif + CFLAGS += -D_LINUX_ + PETSCROOT += /home/larour/Libs/petsc-2.3.2-p3 + PETSCARCH += linux-gnu-amd64 + endif + ifeq (win,$(findstring win,$(platform))) + ifeq ($(compiler),borland) + supported = yes + OBJ_EXT = obj + LIB_EXT = LIB + ifeq ($(cluster),1) + OBJ_EXT = sobj + LIB_EXT = sLIB + endif + ifeq ($(batch),1) + OBJ_EXT = bobj + LIB_EXT = bLIB + endif + MEX_EXT = mexw32 + #MROOT = C:/MATLAB704 + MROOT = C:/MATLAB/R2006b + MBIN = $(MROOT)/bin/win32 + MEX = $(MBIN)/mex.bat + MOPTS = -f $(MBIN)/mexopts/bcc55opts.bat -V5 + CC = C:/Program\ Files/Borland/Cbuilder6/Bin/bcc32 + CFLAGS += -D_WIN_ + endif + endif + endif + + # if not yet assigned, set remaining defaults: + + ifndef MBIN + MBIN = $(MROOT)/bin + endif + + ifndef MEX + MEX = $(MBIN)/mex + endif + + ifeq ($(cluster),0) + ifndef MINCLUDE + MINCLUDE = $(MROOT)/extern/include + endif + endif + + ifeq ($(memmgr),1) + CFLAGS += -D_MEMMGR_ + endif + + + # for verbose build: + #MOPTS += -v + + CFLAGS += -I$(MINCLUDE) + + CFLAGS += -DMATLAB + + # define flags for computational libraries. + ifeq (metis,$(findstring metis,$(computlib))) + METISDIR=/proj/tpfimos/larour/Libraries/linux/metis-4.0-matlab/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + endif + + ifeq (petsc,$(findstring petsc,$(computlib))) + CFLAGS += -I$(PETSCROOT) -I$(PETSCROOT)/include/ -I$(PETSCROOT)/bmake/$(PETSCARCH) + CFLAGS += -D_PETSC_ + COMPUTLIBS+= -L$(PETSCROOT)/lib/$(PETSCARCH)/ -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts + endif + + ifeq (standard,$(findstring standard,$(computlib))) + CFLAGS += -D_STANDARD_ + #No need to define COMPUTLIBS: we are using our "home" made routines. + endif + + # activate thread compilation if necessary. + ifeq ($(thread),yes) + CFLAGS += -D_THREAD_ + endif + + # gcc build + #GCCOPTS = gccopts.sh + #CC = gcc + + #define libraries that need to be linked with all the mex modules + + ifeq ($(cluster),0) #we are building mex module only serially, not on a cluster on in batch mode + LIBS = ../Cielo.$(LIB_EXT) + endif +endif Index: /issm/trunk/etc/platforms/wilkes/704/Make_default_rules.mk =================================================================== --- /issm/trunk/etc/platforms/wilkes/704/Make_default_rules.mk (revision 1) +++ /issm/trunk/etc/platforms/wilkes/704/Make_default_rules.mk (revision 1) @@ -0,0 +1,41 @@ + +# pattern rules for windows: + +ifeq ($(OBJ_EXT),win) + +%.obj : %.c + $(CC) -c $(CFLAGS) -o $@ $< + +%.sobj : %.c + $(CC) -c $(CFLAGS) -o $@ $< + +%.bobj : %.c + $(CC) -c $(CFLAGS) -o $@ $< +endif + +# pattern rules for linux64: + +ifeq ($(PLATFORM),lin64) + +%.o : %.c + $(CC) -c -fPIC -largeArrayDims $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.so : %.c + $(CC) -c -fPIC -largeArrayDims $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.bo : %.c + $(CC) -c -fPIC -largeArrayDims $(CFLAGS) $(CPPFLAGS) $< -o $@ +endif + +# pattern rules for linux: +ifeq ($(PLATFORM),lin) +%.o : %.c + $(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.so : %.c + $(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.bo : %.c + $(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@ +endif + Index: /issm/trunk/etc/platforms/wilkes/704/Make_server_config.mk =================================================================== --- /issm/trunk/etc/platforms/wilkes/704/Make_server_config.mk (revision 1) +++ /issm/trunk/etc/platforms/wilkes/704/Make_server_config.mk (revision 1) @@ -0,0 +1,92 @@ +#Server Makefile configuration. + +ifeq ($(cluster),1) + + #Add some strict compiling + CFLAGS += -Werror-implicit-function-declaration + + #Undefine matlab if already defined. + CFLAGS+= -UMATLAB + + ifdef MPILAUNCH + mpilaunch = $(MPILAUNCH) + else + mpilaunch= mpi + endif + + ifeq ($(mpilaunch),bsub) + CFLAGS += -D_BSUB_ + endif + ifeq ($(mpilaunch),mpi) + CFLAGS += -D_MPI_ + endif + + #Server flags + CFLAGS += -fno-strict-aliasing -funroll-loops -g3 -D_SERVER_ -O3 + #CFLAGS += -Wall + + #Cluster flags: + MPIROOT=/home/larour/Libs/mpich2-gnu + CC=$(MPIROOT)/bin/mpicc + + CFLAGS += -D_CLUSTER_ -I$(MPIROOT)/include + + COMPUTLIBS += -L$(MPIROOT) -lfmpich -lmpich -lmpichcxx + + #PETSC Definitions: + ifeq (petsc,$(findstring petsc,$(computlib))) + #LAPACK and BLAS definitions needed for MPI use of Petsc. + FBLASLAPACKDIR=$(PETSCROOT)/externalpackages/fblaslapack/$(PETSCARCH) + COMPUTLIBS += -L$(FBLASLAPACKDIR) -lflapack -lfblas + endif + + #SLEPC Definitions + ifeq (slepc,$(findstring slepc,$(computlib))) + SLEPCDIR=/home/larour/Libs/slepc-2.3.2 + + CFLAGS += -I$(SLEPCDIR)/include + + #COMPUTLIBS += -L$(SLEPCDIR)/lib/$(PETSCARCH) -lslepc + endif + + #SCALAPACK Definitions + ifeq (scalapack,$(findstring scalapack,$(computlib))) + SCALAPACKDIR=/home/larour/Libs/SCALAPACK/mpich2-gnu + #We need BLACS to work with Scalapack + BLACSDIR=/proj/tpfimos/larour/Libraries/linux/BLACS/LIB/mpich2-gnu + + COMPUTLIBS += -L$(SCALAPACKDIR) -lscalapack \ + -L$(BLACSDIR) -lblacsF77init_MPI-LINUX-0 -lblacs_MPI-LINUX-0 -lblacsCinit_MPI-LINUX-0 + endif + + #PLAPACK Definitions. + ifeq (plapack,$(findstring plapack,$(computlib))) + PLAPACKDIR=$(PETSCROOT)/externalpackages/PLAPACKR32 + #We need also Petsc Plapack prototypes found in $PETSCROOT)/src/mat/impls/dense/mpi/plapack/PLA_prototypes.h + + CFLAGS += -I$(PLAPACKDIR)/INCLUDE -I$(PETSCROOT)/src/mat/impls/dense/mpi/plapack/ + + COMPUTLIBS += -L$(PLAPACKDIR)/$(PETSCARCH) -lPLAPACK + endif + + #Metis definitions + METISDIR=/home/larour/Libs/metis-4.0/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + + #Extra definitions + #COMPUTLIBS += -lnsl -lrt -L/usr/X11R6/lib -lX11 -lg2c -lpetsc + COMPUTLIBS += -lnsl -lrt -L/usr/X11R6/lib -lX11 -lpetsc + + + #COMPUTLIBS += -L/usr/local/g95/lib/gcc-lib/i686-pc-linux-gnu/4.0.3/ -lf95 + #Fortran defintions in case using different compiler (absoft) + #FORTRAN_DIR=/opt/absoft/ + #FORTRAN_LIBS= -lutil -lpthread -lfio -lU77 -lV77 -lf90math -lf77math -lf95math + +endif + +ifeq ($(batch),1) +#Add _BATCH_ flag to compilation +CFLAGS+= -D_BATCH_ +endif Index: /issm/trunk/etc/platforms/wilkes/704/Makefile_shared =================================================================== --- /issm/trunk/etc/platforms/wilkes/704/Makefile_shared (revision 1) +++ /issm/trunk/etc/platforms/wilkes/704/Makefile_shared (revision 1) @@ -0,0 +1,311 @@ + +# Makefile for utils.a library, + + +# make configuration: +include ../Make_config.mk +include ../Make_server_config.mk + +export + +# other local definitions: +#CFLAGS += -Werror-implicit-function-declaration + +ARFLAGS = cr + + +VPATH = ../db_ ../dbx_ \ + AllocOps DofOps SetLogicMatrixOps setLogicMatrixOps \ + MatlabLayer MatrixUtils Numerics Sparse SortAndSearch \ + Marshalling Time StdMemOut ElementUtils clientserver Signals\ + Io + + +HEADERS = imos.h \ + imdbx.h + +ifeq ($(cluster),0) +OBJECTS= ConnectionParameters.$(OBJ_EXT)\ + CCSSparseMatrixAsMatlabSparse.$(OBJ_EXT)\ + DataSetRefAddToGarbageCollector.$(OBJ_EXT)\ + DataSetRefDeleteFromGarbageCollector.$(OBJ_EXT)\ + GetAnalysisTypeAsEnum.$(OBJ_EXT) \ + ExistAndValidType.$(OBJ_EXT)\ + mexFlush.$(OBJ_EXT)\ + CheckNumMatlabArguments.$(OBJ_EXT) +endif + +OBJECTS += alloc.$(OBJ_EXT) \ + mxGetAssignedField.$(OBJ_EXT)\ + MemoryManager.$(OBJ_EXT)\ + clientserver.$(OBJ_EXT)\ + cross.$(OBJ_EXT)\ + norm.$(OBJ_EXT)\ + ClientServerBoot.$(OBJ_EXT)\ + CsrSparseMatrix.$(OBJ_EXT)\ + BinarySearch.$(OBJ_EXT) \ + GetAnalysisTypeAsEnumFromString.$(OBJ_EXT) \ + GetDOFCount.$(OBJ_EXT) \ + GetVectorbOrthogonalToVectora.$(OBJ_EXT) \ + InitDofTree.$(OBJ_EXT) \ + InsertionSort.$(OBJ_EXT) \ + MarshallingUtils.$(OBJ_EXT)\ + Merge.$(OBJ_EXT) \ + nsscanf.$(OBJ_EXT) \ + ParseSetListIntoSetLogicMatrix.$(OBJ_EXT) \ + Partn.$(OBJ_EXT) \ + effective_value.$(OBJ_EXT) \ + Paterson.$(OBJ_EXT) \ + PrintfMacroExpand.$(OBJ_EXT)\ + Quicksort.$(OBJ_EXT) \ + QuicksortDoubleByInteger.$(OBJ_EXT) \ + QuicksortIntegerByDouble.$(OBJ_EXT) \ + QuicksortIntegerByInteger.$(OBJ_EXT) \ + QuicksortTwoIntegersByInteger.$(OBJ_EXT) \ + SetLogicMatrix.$(OBJ_EXT) \ + SetUsetBitFromChar.$(OBJ_EXT) \ + SparseMatrix.$(OBJ_EXT) \ + SparseMatrixColumn.$(OBJ_EXT) \ + SparseUtils.$(OBJ_EXT) \ + StdMemOutAdd.$(OBJ_EXT)\ + StdMemOutIsOpen.$(OBJ_EXT)\ + StdMemOutOpen.$(OBJ_EXT)\ + StdMemOutClose.$(OBJ_EXT)\ + TokenstringIter.$(OBJ_EXT) \ + UnsymmCrout.$(OBJ_EXT) \ + ValidateDofSelections.$(OBJ_EXT)\ + WriteDataToDisk.$(OBJ_EXT)\ + waitn.$(OBJ_EXT)\ + waitms.$(OBJ_EXT)\ + Catch_Sigchld.$(OBJ_EXT)\ + Catch_Sigurg.$(OBJ_EXT)\ + Catch_Sigint.$(OBJ_EXT)\ + Catch_Sigio.$(OBJ_EXT) \ + posix_signal.$(OBJ_EXT) + +ifeq ($(cluster),1) +OBJECTS+= mxGetField.$(OBJ_EXT)\ + mexGetArrayPtr.$(OBJ_EXT)\ + Catch_Sigusr2.$(OBJ_EXT)\ + EmptyErrorString.$(OBJ_EXT) \ + GetOwnershipBoundariesFromRange.$(OBJ_EXT)\ + IsWorkspaceSynchronized.$(OBJ_EXT) \ + Mergesolvec.$(OBJ_EXT)\ + Profiler.$(OBJ_EXT) \ + Reducematrix.$(OBJ_EXT) \ + Reducevectorg.$(OBJ_EXT) \ + Reducematrixfromgtof.$(OBJ_EXT) \ + Reducerightside.$(OBJ_EXT)\ + SerialToVec.$(OBJ_EXT) \ + SerialToVecNoBcast.$(OBJ_EXT) \ + SetErrMsg.$(OBJ_EXT) \ + SharedStack.$(OBJ_EXT) \ + VectorPartition.$(OBJ_EXT) \ + Wtime.$(OBJ_EXT) \ + MPIDebug.$(OBJ_EXT) +endif + +# additional Windows build objects: + +ifeq (win,$(findstring win,$(platform))) +OBJECTS += strcasecmp.$(OBJ_EXT) +endif + + +ifeq (no,$(supported)) +ERR = unsupported combination of VER, PLATFORM, COMPILER +all: print_build_info err +else +ifeq ($(cluster),0) +all : print_build_info utils.$(LIB_EXT) +else +all : print_build_info utils.$(LIB_EXT) +endif +endif + +utils.$(LIB_EXT) : $(OBJECTS) +ifeq (win,$(findstring win,$(platform))) + echo $(OBJECTS) > utils.rsp + ../rsp_formatter.pl utils.rsp + tlib /C utils @utils.rsp + rm utils.rsp +else + $(AR) $(ARFLAGS) utils.$(LIB_EXT) $(OBJECTS) + ranlib utils.$(LIB_EXT) +endif + + +# Dynamic allocation: +alloc.$(OBJ_EXT) : alloc.c alloc.h $(HEADERS) +MemoryManager.$(OBJ_EXT) : MemoryManager.c MemoryManager.h $(HEADERS) + +# MatlabLayer: +ExistAndValidType.$(OBJ_EXT) : ExistAndValidType.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +DataSetRefAddToGarbageCollector.$(OBJ_EXT) : DataSetRefAddToGarbageCollector.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +DataSetRefDeleteFromGarbageCollector.$(OBJ_EXT) : DataSetRefDeleteFromGarbageCollector.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +mexFlush.$(OBJ_EXT) : mexFlush.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +CCSSparseMatrixAsMatlabSparse.$(OBJ_EXT) : CCSSparseMatrixAsMatlabSparse.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +ConnectionParameters.$(OBJ_EXT) : ConnectionParameters.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +CheckNumMatlabArguments.$(OBJ_EXT) : CheckNumMatlabArguments.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +GetAnalysisTypeAsEnum.$(OBJ_EXT) : GetAnalysisTypeAsEnum.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< + + + + +# DofOps: +GetDOFCount.$(OBJ_EXT) : GetDOFCount.c $(HEADERS) +InitDofTree.$(OBJ_EXT) : InitDofTree.c $(HEADERS) +SetUsetBitFromChar.$(OBJ_EXT) : SetUsetBitFromChar.c $(HEADERS) +ValidateDofSeletions.$(OBJ_EXT) : ValidateDofSelections.c $(HEADERS) + +# Element utilities +Paterson.$(OBJ_EXT) : Paterson.c $(HEADERS) +effective_value.$(OBJ_EXT) : effective_value.c $(HEADERS) + +# Matrix Utilities: +#RowToColumnOrder.$(OBJ_EXT) : RowToColumnOrder.c $(HEADERS) +Merge.$(OBJ_EXT) : Merge.c $(HEADERS) +Partn.$(OBJ_EXT) : Partn.c $(HEADERS) + +# Sparse: +SparseMatrix.$(OBJ_EXT) : SparseMatrix.c Sparse.h $(HEADERS) +SparseMatrixColumn.$(OBJ_EXT) : SparseMatrixColumn.c Sparse.h $(HEADERS) +SparseUtils.$(OBJ_EXT) : SparseUtils.c Sparse.h $(HEADERS) +CsrSparseMatrix.$(OBJ_EXT) : CsrSparseMatrix.c CsrSparseMatrix.h $(HEADERS) + +# SetLogicMatrixOps: +ParseSetListIntoSetLogicMatrix.$(OBJ_EXT) : ParseSetListIntoSetLogicMatrix.c SetLogicMatrix.h $(HEADERS) +SetLogicMatrix.$(OBJ_EXT) : SetLogicMatrix.c SetLogicMatrix.h $(HEADERS) +TokenstringIter.$(OBJ_EXT) : TokenstringIter.c SetLogicMatrix.h $(HEADERS) + +# string handling: +nsscanf.$(OBJ_EXT) : nsscanf.c $(HEADERS) +strcasecmp.$(OBJ_EXT) : strcasecmp.c $(HEADERS) + +#ReallocateArray.$(OBJ_EXT) : ReallocateArray.c $(HEADERS) + +# Numerics: +GetVectorbOrthogonalToVectora.$(OBJ_EXT) : GetVectorbOrthogonalToVectora.c $(HEADERS) +UnsymmCrout.$(OBJ_EXT) : UnsymmCrout.c UnsymmCrout.h $(HEADERS) +norm.$(OBJ_EXT) : norm.c $(HEADERS) + +# SortAndSearch: +# (note: on linux, override implicit rules to include conformance to the c99 standard +# to allow log2() function usage in Quicksort routines) +BinarySearch.$(OBJ_EXT) : BinarySearch.c $(HEADERS) +InsertionSort.$(OBJ_EXT) : InsertionSort.c $(HEADERS) + + +ifeq ($(cluster),0) +Quicksort.$(OBJ_EXT) : Quicksort.c $(HEADERS) +QuicksortDoubleByInteger.$(OBJ_EXT) : QuicksortDoubleByInteger.c $(HEADERS) +QuicksortIntegerByDouble.$(OBJ_EXT) : QuicksortIntegerByDouble.c $(HEADERS) +else + +Quicksort.$(OBJ_EXT) : Quicksort.c $(HEADERS) +ifeq (lin,$(findstring lin,$(platform))) + $(CC) -c -std=c99 $(CFLAGS) $< -o Quicksort.$(OBJ_EXT) +endif +QuicksortDoubleByInteger.$(OBJ_EXT) : QuicksortDoubleByInteger.c $(HEADERS) +ifeq (lin,$(findstring lin,$(platform))) + $(CC) -c -std=c99 $(CFLAGS) $< -o QuicksortDoubleByInteger.$(OBJ_EXT) +endif +QuicksortIntegerByDouble.$(OBJ_EXT) : QuicksortIntegerByDouble.c $(HEADERS) +ifeq (lin,$(findstring lin,$(platform))) + $(CC) -c -std=c99 $(CFLAGS) $< -o QuicksortIntegerByDouble.$(OBJ_EXT) +endif + +endif + +# Marshalling +MarshallingUtils.$(OBJ_EXT): MarshallingUtils.c + +# Time +waitn.$(OBJ_EXT): waitn.c +waitms.$(OBJ_EXT): waitms.c + +# STDMEMOUT +StdMemOutAdd.$(OBJ_EXT): StdMemOutAdd.c +StdMemOutIsOpen.$(OBJ_EXT): StdMemOutIsOpen.c +StdMemOutOpen.$(OBJ_EXT): StdMemOutOpen.c +StdMemOutClose.$(OBJ_EXT): StdMemOutClose.c + + +#ParseSetRecordIntoSetLogicMatrix.$(OBJ_EXT) : ParseSetRecordIntoSetLogicMatrix.c $(HEADERS) +#setLogicMatrix.$(OBJ_EXT) : setLogicMatrix.c $(HEADERS) +#tokenstringIter.$(OBJ_EXT) : tokenstringIter.c $(HEADERS) + +#Printf macro expansion: +PrintfMacroExpand.$(OBJ_EXT): PrintfMacroExpand.c + +#IO +WriteDataToDisk.$(OBJ_EXT): WriteDataToDisk.c $(HEADERS) + +#Client/Server compilation +ifeq ($(cluster),0) +ClientServerBoot.$(OBJ_EXT) : ClientServerBoot.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< + +GetAnalysisTypeAsEnumFromString.$(OBJ_EXT) : GetAnalysisTypeAsEnumFromString.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< + +else +ClientServerBoot.$(OBJ_EXT) : ClientServerBoot.c $(HEADERS) +endif +mxGetAssignedField.$(OBJ_EXT) : mxGetAssignedField.c $(HEADERS) +mexGetArrayPtr.$(OBJ_EXT) : mexGetArrayPtr.c $(HEADERS) +GetAnalysisTypeAsEnumFromString.$(OBJ_EXT) : GetAnalysisTypeAsEnumFromString.c $(HEADERS) + +ifeq ($(cluster),1) #server objects +EmptyErrorString.$(OBJ_EXT): EmptyErrorString.c +mxGetField.$(OBJ_EXT) : mxGetField.c $(HEADERS) +GetOwnershipBoundariesFromRange.$(OBJ_EXT): GetOwnershipBoundariesFromRange.c +IsWorkspaceSynchronized.$(OBJ_EXT): IsWorkspaceSynchronized.c +MatPartition.$(OBJ_EXT): MatrixUtils/MatPartition.c +Mergesolvec.$(OBJ_EXT): MatrixUtils/Mergesolvec.c +Profiler.$(OBJ_EXT): Time/Profiler.c +Reducematrixfromgtof.$(OBJ_EXT): MatrixUtils/Reducematrixfromgtof.c +Reducematrix.$(OBJ_EXT): MatrixUtils/Reducematrix.c +Reducevectorg.$(OBJ_EXT): MatrixUtils/Reducevectorg.c +Reducerightside.$(OBJ_EXT): MatrixUtils/Reducerightside.c +SerialToVec.$(OBJ_EXT): MatrixUtils/SerialToVec.c +SerialToVecNoBcast.$(OBJ_EXT): MatrixUtils/SerialToVecNoBcast.c +SetErrMsg.$(OBJ_EXT): SetErrMsg.c +SharedStack.$(OBJ_EXT): SharedStack.c +VectorPartition.$(OBJ_EXT): VectorPartition.c +Wtime.$(OBJ_EXT): Time/Wtime.c +endif + +#clientserver +clientserver.$(OBJ_EXT): clientserver/clientserver.c clientserver/clientserver.h + +#Signals +Catch_Sigchld.$(OBJ_EXt): Signals/Catch_Sigchld.c $(HEADERS) +Catch_Sigusr2.$(OBJ_EXt): Signals/Catch_Sigusr2.c $(HEADERS) +Catch_Sigurg.$(OBJ_EXt): Signals/Catch_Sigurg.c $(HEADERS) +Catch_Sigint.$(OBJ_EXT): Signals/Catch_Sigint.c +posix_signal.$(OBJ_EXT): Signals/posix_signal.c + +#Default compilation rules +include ../Make_build_err_usage_targets.mk +include ../Make_default_rules.mk + + +.PHONY : clean +ifeq (no,$(supported)) + ERR = unsupported combination of VER, PLATFORM, COMPILER + clean: print_build_info err +else +clean: print_build_info + @echo cleaning up files with extensions .$(LIB_EXT), .$(OBJ_EXT) and .$(MEX_EXT) ... + -rm -f ./*.$(LIB_EXT) ./*.$(OBJ_EXT) ./*.$(MEX_EXT) +endif + Index: /issm/trunk/etc/platforms/wilkes/76/Make_config.mk =================================================================== --- /issm/trunk/etc/platforms/wilkes/76/Make_config.mk (revision 1) +++ /issm/trunk/etc/platforms/wilkes/76/Make_config.mk (revision 1) @@ -0,0 +1,237 @@ + +# +# Make_config.mk +# + + +ifeq ($(MAKELEVEL),0) + + # run only if top-level make: + SHELL = /bin/sh + + # command-line args, defaults: + + ifdef VER + version = $(VER) + else + version = 5 + endif + + ifdef CLUSTER + cluster = $(CLUSTER) + else + cluster = 0 + endif + + ifdef BATCH + batch = $(BATCH) + else + batch = 0 + endif + + + + ifdef PLATFORM + platform = $(PLATFORM) + else + platform = sun + endif + + ifdef COMPILER + compiler = $(COMPILER) + endif + + ifdef COMPUTLIB + computlib = $(COMPUTLIB) + endif + + ifdef THREAD + thread = $(THREAD) + endif + + ifdef MEMORYMANAGER + memmgr = $(MEMORYMANAGER) + else + memmgr = 0 + endif + + supported = no + + # branch accordingly: + + ifeq ($(version),5) + MROOT = /opt/cots/matlab/5.3.1 + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v5.sh + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),6) + MROOT = /opt/cots/matlab/6.5 + MOPTS = -V5 + ifeq ($(platform),sun) + supported = yes + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MOPTS += -f ../mexopts_v651.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + endif + + ifeq ($(version),7) + ifeq ($(platform),sun) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexsol + MROOT = /opt/cots/matlab/7.0.4 + MOPTS += -f ../mexopts_v704.sh -V5 + CFLAGS += -v + CFLAGS += -D_SUN_ + endif + ifeq (lin,$(findstring lin,$(platform))) + supported = yes + OBJ_EXT = o + LIB_EXT = a + ifeq ($(cluster),1) + OBJ_EXT = so + LIB_EXT = sa + endif + ifeq ($(batch),1) + OBJ_EXT = bo + LIB_EXT = ba + endif + MEX_EXT = mexa64 + #MROOT = /usr/local/pkgs/matlab-7.4 + MROOT = /usr/local/pkgs/matlab-7.6 + #MOPTS += -f ../mexopts_v704.sh -V5 + MOPTS += -f ../mexopts_v76.sh -V5 + ifeq ($(compiler),icc) + CC = icc + CFLAGS += -static #needed for any intel compilation. + else + CC = gcc + endif + CFLAGS += -D_LINUX_ -D__GCC4BUILD__ -largeArrayDims + PETSCROOT += /home/larour/Libs/petsc-2.3.2-p3 + PETSCARCH += linux-gnu-amd64 + endif + ifeq (win,$(findstring win,$(platform))) + ifeq ($(compiler),borland) + supported = yes + OBJ_EXT = obj + LIB_EXT = LIB + ifeq ($(cluster),1) + OBJ_EXT = sobj + LIB_EXT = sLIB + endif + ifeq ($(batch),1) + OBJ_EXT = bobj + LIB_EXT = bLIB + endif + MEX_EXT = mexw32 + #MROOT = C:/MATLAB704 + MROOT = C:/MATLAB/R2006b + MBIN = $(MROOT)/bin/win32 + MEX = $(MBIN)/mex.bat + MOPTS = -f $(MBIN)/mexopts/bcc55opts.bat -V5 + CC = C:/Program\ Files/Borland/Cbuilder6/Bin/bcc32 + CFLAGS += -D_WIN_ + endif + endif + endif + + # if not yet assigned, set remaining defaults: + + ifndef MBIN + MBIN = $(MROOT)/bin + endif + + ifndef MEX + MEX = $(MBIN)/mex + endif + + ifeq ($(cluster),0) + ifndef MINCLUDE + MINCLUDE = $(MROOT)/extern/include + endif + endif + + ifeq ($(memmgr),1) + CFLAGS += -D_MEMMGR_ + endif + + + # for verbose build: + #MOPTS += -v + + CFLAGS += -I$(MINCLUDE) + + CFLAGS += -DMATLAB + + # define flags for computational libraries. + ifeq (metis,$(findstring metis,$(computlib))) + METISDIR=/proj/tpfimos/larour/Libraries/linux/metis-4.0-matlab/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + endif + + ifeq (petsc,$(findstring petsc,$(computlib))) + CFLAGS += -I$(PETSCROOT) -I$(PETSCROOT)/include/ -I$(PETSCROOT)/bmake/$(PETSCARCH) + CFLAGS += -D_PETSC_ + COMPUTLIBS+= -L$(PETSCROOT)/lib/$(PETSCARCH)/ -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts + endif + + ifeq (standard,$(findstring standard,$(computlib))) + CFLAGS += -D_STANDARD_ + #No need to define COMPUTLIBS: we are using our "home" made routines. + endif + + # activate thread compilation if necessary. + ifeq ($(thread),yes) + CFLAGS += -D_THREAD_ + endif + + # gcc build + #GCCOPTS = gccopts.sh + #CC = gcc + + #define libraries that need to be linked with all the mex modules + + ifeq ($(cluster),0) #we are building mex module only serially, not on a cluster on in batch mode + LIBS = ../Cielo.$(LIB_EXT) + endif +endif Index: /issm/trunk/etc/platforms/wilkes/76/Make_default_rules.mk =================================================================== --- /issm/trunk/etc/platforms/wilkes/76/Make_default_rules.mk (revision 1) +++ /issm/trunk/etc/platforms/wilkes/76/Make_default_rules.mk (revision 1) @@ -0,0 +1,41 @@ + +# pattern rules for windows: + +ifeq ($(OBJ_EXT),win) + +%.obj : %.c + $(CC) -c $(CFLAGS) -o $@ $< + +%.sobj : %.c + $(CC) -c $(CFLAGS) -o $@ $< + +%.bobj : %.c + $(CC) -c $(CFLAGS) -o $@ $< +endif + +# pattern rules for linux64: + +ifeq ($(PLATFORM),lin64) + +%.o : %.c + $(CC) -c -fPIC -largeArrayDims $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.so : %.c + $(CC) -c -fPIC -largeArrayDims $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.bo : %.c + $(CC) -c -fPIC -largeArrayDims $(CFLAGS) $(CPPFLAGS) $< -o $@ +endif + +# pattern rules for linux: +ifeq ($(PLATFORM),lin) +%.o : %.c + $(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.so : %.c + $(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@ + +%.bo : %.c + $(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@ +endif + Index: /issm/trunk/etc/platforms/wilkes/76/Make_server_config.mk =================================================================== --- /issm/trunk/etc/platforms/wilkes/76/Make_server_config.mk (revision 1) +++ /issm/trunk/etc/platforms/wilkes/76/Make_server_config.mk (revision 1) @@ -0,0 +1,92 @@ +#Server Makefile configuration. + +ifeq ($(cluster),1) + + #Add some strict compiling + CFLAGS += -Werror-implicit-function-declaration + + #Undefine matlab if already defined. + CFLAGS+= -UMATLAB + + ifdef MPILAUNCH + mpilaunch = $(MPILAUNCH) + else + mpilaunch= mpi + endif + + ifeq ($(mpilaunch),bsub) + CFLAGS += -D_BSUB_ + endif + ifeq ($(mpilaunch),mpi) + CFLAGS += -D_MPI_ + endif + + #Server flags + CFLAGS += -fno-strict-aliasing -funroll-loops -g3 -D_SERVER_ -O3 + #CFLAGS += -Wall + + #Cluster flags: + MPIROOT=/home/larour/Libs/mpich2-gnu + CC=$(MPIROOT)/bin/mpicc + + CFLAGS += -D_CLUSTER_ -I$(MPIROOT)/include + + COMPUTLIBS += -L$(MPIROOT) -lfmpich -lmpich -lmpichcxx + + #PETSC Definitions: + ifeq (petsc,$(findstring petsc,$(computlib))) + #LAPACK and BLAS definitions needed for MPI use of Petsc. + FBLASLAPACKDIR=$(PETSCROOT)/externalpackages/fblaslapack/$(PETSCARCH) + COMPUTLIBS += -L$(FBLASLAPACKDIR) -lflapack -lfblas + endif + + #SLEPC Definitions + ifeq (slepc,$(findstring slepc,$(computlib))) + SLEPCDIR=/home/larour/Libs/slepc-2.3.2 + + CFLAGS += -I$(SLEPCDIR)/include + + #COMPUTLIBS += -L$(SLEPCDIR)/lib/$(PETSCARCH) -lslepc + endif + + #SCALAPACK Definitions + ifeq (scalapack,$(findstring scalapack,$(computlib))) + SCALAPACKDIR=/home/larour/Libs/SCALAPACK/mpich2-gnu + #We need BLACS to work with Scalapack + BLACSDIR=/proj/tpfimos/larour/Libraries/linux/BLACS/LIB/mpich2-gnu + + COMPUTLIBS += -L$(SCALAPACKDIR) -lscalapack \ + -L$(BLACSDIR) -lblacsF77init_MPI-LINUX-0 -lblacs_MPI-LINUX-0 -lblacsCinit_MPI-LINUX-0 + endif + + #PLAPACK Definitions. + ifeq (plapack,$(findstring plapack,$(computlib))) + PLAPACKDIR=$(PETSCROOT)/externalpackages/PLAPACKR32 + #We need also Petsc Plapack prototypes found in $PETSCROOT)/src/mat/impls/dense/mpi/plapack/PLA_prototypes.h + + CFLAGS += -I$(PLAPACKDIR)/INCLUDE -I$(PETSCROOT)/src/mat/impls/dense/mpi/plapack/ + + COMPUTLIBS += -L$(PLAPACKDIR)/$(PETSCARCH) -lPLAPACK + endif + + #Metis definitions + METISDIR=/home/larour/Libs/metis-4.0/ + CFLAGS += -I$(METISDIR)/Lib + COMPUTLIBS += -L$(METISDIR) -lmetis + + #Extra definitions + #COMPUTLIBS += -lnsl -lrt -L/usr/X11R6/lib -lX11 -lg2c -lpetsc + COMPUTLIBS += -lnsl -lrt -L/usr/X11R6/lib -lX11 -lpetsc + + + #COMPUTLIBS += -L/usr/local/g95/lib/gcc-lib/i686-pc-linux-gnu/4.0.3/ -lf95 + #Fortran defintions in case using different compiler (absoft) + #FORTRAN_DIR=/opt/absoft/ + #FORTRAN_LIBS= -lutil -lpthread -lfio -lU77 -lV77 -lf90math -lf77math -lf95math + +endif + +ifeq ($(batch),1) +#Add _BATCH_ flag to compilation +CFLAGS+= -D_BATCH_ +endif Index: /issm/trunk/etc/platforms/wilkes/76/Makefile_shared =================================================================== --- /issm/trunk/etc/platforms/wilkes/76/Makefile_shared (revision 1) +++ /issm/trunk/etc/platforms/wilkes/76/Makefile_shared (revision 1) @@ -0,0 +1,311 @@ + +# Makefile for utils.a library, + + +# make configuration: +include ../Make_config.mk +include ../Make_server_config.mk + +export + +# other local definitions: +#CFLAGS += -Werror-implicit-function-declaration + +ARFLAGS = cr + + +VPATH = ../db_ ../dbx_ \ + AllocOps DofOps SetLogicMatrixOps setLogicMatrixOps \ + MatlabLayer MatrixUtils Numerics Sparse SortAndSearch \ + Marshalling Time StdMemOut ElementUtils clientserver Signals\ + Io + + +HEADERS = imos.h \ + imdbx.h + +ifeq ($(cluster),0) +OBJECTS= ConnectionParameters.$(OBJ_EXT)\ + CCSSparseMatrixAsMatlabSparse.$(OBJ_EXT)\ + DataSetRefAddToGarbageCollector.$(OBJ_EXT)\ + DataSetRefDeleteFromGarbageCollector.$(OBJ_EXT)\ + GetAnalysisTypeAsEnum.$(OBJ_EXT) \ + ExistAndValidType.$(OBJ_EXT)\ + mexFlush.$(OBJ_EXT)\ + CheckNumMatlabArguments.$(OBJ_EXT) +endif + +OBJECTS += alloc.$(OBJ_EXT) \ + mxGetAssignedField.$(OBJ_EXT)\ + MemoryManager.$(OBJ_EXT)\ + clientserver.$(OBJ_EXT)\ + cross.$(OBJ_EXT)\ + norm.$(OBJ_EXT)\ + ClientServerBoot.$(OBJ_EXT)\ + CsrSparseMatrix.$(OBJ_EXT)\ + BinarySearch.$(OBJ_EXT) \ + GetAnalysisTypeAsEnumFromString.$(OBJ_EXT) \ + GetDOFCount.$(OBJ_EXT) \ + GetVectorbOrthogonalToVectora.$(OBJ_EXT) \ + InitDofTree.$(OBJ_EXT) \ + InsertionSort.$(OBJ_EXT) \ + MarshallingUtils.$(OBJ_EXT)\ + Merge.$(OBJ_EXT) \ + nsscanf.$(OBJ_EXT) \ + ParseSetListIntoSetLogicMatrix.$(OBJ_EXT) \ + Partn.$(OBJ_EXT) \ + effective_value.$(OBJ_EXT) \ + Paterson.$(OBJ_EXT) \ + PrintfMacroExpand.$(OBJ_EXT)\ + Quicksort.$(OBJ_EXT) \ + QuicksortDoubleByInteger.$(OBJ_EXT) \ + QuicksortIntegerByDouble.$(OBJ_EXT) \ + QuicksortIntegerByInteger.$(OBJ_EXT) \ + QuicksortTwoIntegersByInteger.$(OBJ_EXT) \ + SetLogicMatrix.$(OBJ_EXT) \ + SetUsetBitFromChar.$(OBJ_EXT) \ + SparseMatrix.$(OBJ_EXT) \ + SparseMatrixColumn.$(OBJ_EXT) \ + SparseUtils.$(OBJ_EXT) \ + StdMemOutAdd.$(OBJ_EXT)\ + StdMemOutIsOpen.$(OBJ_EXT)\ + StdMemOutOpen.$(OBJ_EXT)\ + StdMemOutClose.$(OBJ_EXT)\ + TokenstringIter.$(OBJ_EXT) \ + UnsymmCrout.$(OBJ_EXT) \ + ValidateDofSelections.$(OBJ_EXT)\ + WriteDataToDisk.$(OBJ_EXT)\ + waitn.$(OBJ_EXT)\ + waitms.$(OBJ_EXT)\ + Catch_Sigchld.$(OBJ_EXT)\ + Catch_Sigurg.$(OBJ_EXT)\ + Catch_Sigint.$(OBJ_EXT)\ + Catch_Sigio.$(OBJ_EXT) \ + posix_signal.$(OBJ_EXT) + +ifeq ($(cluster),1) +OBJECTS+= mxGetField.$(OBJ_EXT)\ + mexGetArrayPtr.$(OBJ_EXT)\ + Catch_Sigusr2.$(OBJ_EXT)\ + EmptyErrorString.$(OBJ_EXT) \ + GetOwnershipBoundariesFromRange.$(OBJ_EXT)\ + IsWorkspaceSynchronized.$(OBJ_EXT) \ + Mergesolvec.$(OBJ_EXT)\ + Profiler.$(OBJ_EXT) \ + Reducematrix.$(OBJ_EXT) \ + Reducevectorg.$(OBJ_EXT) \ + Reducematrixfromgtof.$(OBJ_EXT) \ + Reducerightside.$(OBJ_EXT)\ + SerialToVec.$(OBJ_EXT) \ + SerialToVecNoBcast.$(OBJ_EXT) \ + SetErrMsg.$(OBJ_EXT) \ + SharedStack.$(OBJ_EXT) \ + VectorPartition.$(OBJ_EXT) \ + Wtime.$(OBJ_EXT) \ + MPIDebug.$(OBJ_EXT) +endif + +# additional Windows build objects: + +ifeq (win,$(findstring win,$(platform))) +OBJECTS += strcasecmp.$(OBJ_EXT) +endif + + +ifeq (no,$(supported)) +ERR = unsupported combination of VER, PLATFORM, COMPILER +all: print_build_info err +else +ifeq ($(cluster),0) +all : print_build_info utils.$(LIB_EXT) +else +all : print_build_info utils.$(LIB_EXT) +endif +endif + +utils.$(LIB_EXT) : $(OBJECTS) +ifeq (win,$(findstring win,$(platform))) + echo $(OBJECTS) > utils.rsp + ../rsp_formatter.pl utils.rsp + tlib /C utils @utils.rsp + rm utils.rsp +else + $(AR) $(ARFLAGS) utils.$(LIB_EXT) $(OBJECTS) + ranlib utils.$(LIB_EXT) +endif + + +# Dynamic allocation: +alloc.$(OBJ_EXT) : alloc.c alloc.h $(HEADERS) +MemoryManager.$(OBJ_EXT) : MemoryManager.c MemoryManager.h $(HEADERS) + +# MatlabLayer: +ExistAndValidType.$(OBJ_EXT) : ExistAndValidType.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +DataSetRefAddToGarbageCollector.$(OBJ_EXT) : DataSetRefAddToGarbageCollector.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +DataSetRefDeleteFromGarbageCollector.$(OBJ_EXT) : DataSetRefDeleteFromGarbageCollector.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +mexFlush.$(OBJ_EXT) : mexFlush.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +CCSSparseMatrixAsMatlabSparse.$(OBJ_EXT) : CCSSparseMatrixAsMatlabSparse.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +ConnectionParameters.$(OBJ_EXT) : ConnectionParameters.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +CheckNumMatlabArguments.$(OBJ_EXT) : CheckNumMatlabArguments.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< +GetAnalysisTypeAsEnum.$(OBJ_EXT) : GetAnalysisTypeAsEnum.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< + + + + +# DofOps: +GetDOFCount.$(OBJ_EXT) : GetDOFCount.c $(HEADERS) +InitDofTree.$(OBJ_EXT) : InitDofTree.c $(HEADERS) +SetUsetBitFromChar.$(OBJ_EXT) : SetUsetBitFromChar.c $(HEADERS) +ValidateDofSeletions.$(OBJ_EXT) : ValidateDofSelections.c $(HEADERS) + +# Element utilities +Paterson.$(OBJ_EXT) : Paterson.c $(HEADERS) +effective_value.$(OBJ_EXT) : effective_value.c $(HEADERS) + +# Matrix Utilities: +#RowToColumnOrder.$(OBJ_EXT) : RowToColumnOrder.c $(HEADERS) +Merge.$(OBJ_EXT) : Merge.c $(HEADERS) +Partn.$(OBJ_EXT) : Partn.c $(HEADERS) + +# Sparse: +SparseMatrix.$(OBJ_EXT) : SparseMatrix.c Sparse.h $(HEADERS) +SparseMatrixColumn.$(OBJ_EXT) : SparseMatrixColumn.c Sparse.h $(HEADERS) +SparseUtils.$(OBJ_EXT) : SparseUtils.c Sparse.h $(HEADERS) +CsrSparseMatrix.$(OBJ_EXT) : CsrSparseMatrix.c CsrSparseMatrix.h $(HEADERS) + +# SetLogicMatrixOps: +ParseSetListIntoSetLogicMatrix.$(OBJ_EXT) : ParseSetListIntoSetLogicMatrix.c SetLogicMatrix.h $(HEADERS) +SetLogicMatrix.$(OBJ_EXT) : SetLogicMatrix.c SetLogicMatrix.h $(HEADERS) +TokenstringIter.$(OBJ_EXT) : TokenstringIter.c SetLogicMatrix.h $(HEADERS) + +# string handling: +nsscanf.$(OBJ_EXT) : nsscanf.c $(HEADERS) +strcasecmp.$(OBJ_EXT) : strcasecmp.c $(HEADERS) + +#ReallocateArray.$(OBJ_EXT) : ReallocateArray.c $(HEADERS) + +# Numerics: +GetVectorbOrthogonalToVectora.$(OBJ_EXT) : GetVectorbOrthogonalToVectora.c $(HEADERS) +UnsymmCrout.$(OBJ_EXT) : UnsymmCrout.c UnsymmCrout.h $(HEADERS) +norm.$(OBJ_EXT) : norm.c $(HEADERS) + +# SortAndSearch: +# (note: on linux, override implicit rules to include conformance to the c99 standard +# to allow log2() function usage in Quicksort routines) +BinarySearch.$(OBJ_EXT) : BinarySearch.c $(HEADERS) +InsertionSort.$(OBJ_EXT) : InsertionSort.c $(HEADERS) + + +ifeq ($(cluster),0) +Quicksort.$(OBJ_EXT) : Quicksort.c $(HEADERS) +QuicksortDoubleByInteger.$(OBJ_EXT) : QuicksortDoubleByInteger.c $(HEADERS) +QuicksortIntegerByDouble.$(OBJ_EXT) : QuicksortIntegerByDouble.c $(HEADERS) +else + +Quicksort.$(OBJ_EXT) : Quicksort.c $(HEADERS) +ifeq (lin,$(findstring lin,$(platform))) + $(CC) -c -std=c99 $(CFLAGS) $< -o Quicksort.$(OBJ_EXT) +endif +QuicksortDoubleByInteger.$(OBJ_EXT) : QuicksortDoubleByInteger.c $(HEADERS) +ifeq (lin,$(findstring lin,$(platform))) + $(CC) -c -std=c99 $(CFLAGS) $< -o QuicksortDoubleByInteger.$(OBJ_EXT) +endif +QuicksortIntegerByDouble.$(OBJ_EXT) : QuicksortIntegerByDouble.c $(HEADERS) +ifeq (lin,$(findstring lin,$(platform))) + $(CC) -c -std=c99 $(CFLAGS) $< -o QuicksortIntegerByDouble.$(OBJ_EXT) +endif + +endif + +# Marshalling +MarshallingUtils.$(OBJ_EXT): MarshallingUtils.c + +# Time +waitn.$(OBJ_EXT): waitn.c +waitms.$(OBJ_EXT): waitms.c + +# STDMEMOUT +StdMemOutAdd.$(OBJ_EXT): StdMemOutAdd.c +StdMemOutIsOpen.$(OBJ_EXT): StdMemOutIsOpen.c +StdMemOutOpen.$(OBJ_EXT): StdMemOutOpen.c +StdMemOutClose.$(OBJ_EXT): StdMemOutClose.c + + +#ParseSetRecordIntoSetLogicMatrix.$(OBJ_EXT) : ParseSetRecordIntoSetLogicMatrix.c $(HEADERS) +#setLogicMatrix.$(OBJ_EXT) : setLogicMatrix.c $(HEADERS) +#tokenstringIter.$(OBJ_EXT) : tokenstringIter.c $(HEADERS) + +#Printf macro expansion: +PrintfMacroExpand.$(OBJ_EXT): PrintfMacroExpand.c + +#IO +WriteDataToDisk.$(OBJ_EXT): WriteDataToDisk.c $(HEADERS) + +#Client/Server compilation +ifeq ($(cluster),0) +ClientServerBoot.$(OBJ_EXT) : ClientServerBoot.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< + +GetAnalysisTypeAsEnumFromString.$(OBJ_EXT) : GetAnalysisTypeAsEnumFromString.c $(HEADERS) + $(MEX) -c $(MOPTS) $(CFLAGS) $< + +else +ClientServerBoot.$(OBJ_EXT) : ClientServerBoot.c $(HEADERS) +endif +mxGetAssignedField.$(OBJ_EXT) : mxGetAssignedField.c $(HEADERS) +mexGetArrayPtr.$(OBJ_EXT) : mexGetArrayPtr.c $(HEADERS) +GetAnalysisTypeAsEnumFromString.$(OBJ_EXT) : GetAnalysisTypeAsEnumFromString.c $(HEADERS) + +ifeq ($(cluster),1) #server objects +EmptyErrorString.$(OBJ_EXT): EmptyErrorString.c +mxGetField.$(OBJ_EXT) : mxGetField.c $(HEADERS) +GetOwnershipBoundariesFromRange.$(OBJ_EXT): GetOwnershipBoundariesFromRange.c +IsWorkspaceSynchronized.$(OBJ_EXT): IsWorkspaceSynchronized.c +MatPartition.$(OBJ_EXT): MatrixUtils/MatPartition.c +Mergesolvec.$(OBJ_EXT): MatrixUtils/Mergesolvec.c +Profiler.$(OBJ_EXT): Time/Profiler.c +Reducematrixfromgtof.$(OBJ_EXT): MatrixUtils/Reducematrixfromgtof.c +Reducematrix.$(OBJ_EXT): MatrixUtils/Reducematrix.c +Reducevectorg.$(OBJ_EXT): MatrixUtils/Reducevectorg.c +Reducerightside.$(OBJ_EXT): MatrixUtils/Reducerightside.c +SerialToVec.$(OBJ_EXT): MatrixUtils/SerialToVec.c +SerialToVecNoBcast.$(OBJ_EXT): MatrixUtils/SerialToVecNoBcast.c +SetErrMsg.$(OBJ_EXT): SetErrMsg.c +SharedStack.$(OBJ_EXT): SharedStack.c +VectorPartition.$(OBJ_EXT): VectorPartition.c +Wtime.$(OBJ_EXT): Time/Wtime.c +endif + +#clientserver +clientserver.$(OBJ_EXT): clientserver/clientserver.c clientserver/clientserver.h + +#Signals +Catch_Sigchld.$(OBJ_EXt): Signals/Catch_Sigchld.c $(HEADERS) +Catch_Sigusr2.$(OBJ_EXt): Signals/Catch_Sigusr2.c $(HEADERS) +Catch_Sigurg.$(OBJ_EXt): Signals/Catch_Sigurg.c $(HEADERS) +Catch_Sigint.$(OBJ_EXT): Signals/Catch_Sigint.c +posix_signal.$(OBJ_EXT): Signals/posix_signal.c + +#Default compilation rules +include ../Make_build_err_usage_targets.mk +include ../Make_default_rules.mk + + +.PHONY : clean +ifeq (no,$(supported)) + ERR = unsupported combination of VER, PLATFORM, COMPILER + clean: print_build_info err +else +clean: print_build_info + @echo cleaning up files with extensions .$(LIB_EXT), .$(OBJ_EXT) and .$(MEX_EXT) ... + -rm -f ./*.$(LIB_EXT) ./*.$(OBJ_EXT) ./*.$(MEX_EXT) +endif + Index: /issm/trunk/examples/Bumps/Bump1_surface_bed/DomainOutline.exp =================================================================== --- /issm/trunk/examples/Bumps/Bump1_surface_bed/DomainOutline.exp (revision 1) +++ /issm/trunk/examples/Bumps/Bump1_surface_bed/DomainOutline.exp (revision 1) @@ -0,0 +1,10 @@ +## Name:domainoutline +## Icon:0 +# Points Count Value +5 1. +# X pos Y pos +0 0 +0 1000000 +1000000 1000000 +1000000 0 +0 0 Index: /issm/trunk/examples/Bumps/Bump1_surface_bed/Front.exp =================================================================== --- /issm/trunk/examples/Bumps/Bump1_surface_bed/Front.exp (revision 1) +++ /issm/trunk/examples/Bumps/Bump1_surface_bed/Front.exp (revision 1) @@ -0,0 +1,6 @@ +## Name:icefront +## Icon:0 +# Points Count Value +1 1. +# X pos Y pos +0 0 Index: /issm/trunk/examples/Bumps/Bump1_surface_bed/Square.par =================================================================== --- /issm/trunk/examples/Bumps/Bump1_surface_bed/Square.par (revision 1) +++ /issm/trunk/examples/Bumps/Bump1_surface_bed/Square.par (revision 1) @@ -0,0 +1,126 @@ + +%Ok, start defining model parameters here + +%material parameters + md.g=9.8; + md.rho_ice=917; + md.rho_water=1023; + di=md.rho_ice/md.rho_water; + md.yts=365*24*3600; + md.heatcapacity=2009; + md.thermalconductivity=2.2; %W/mK + md.beta=9.8*10^-8; + +%Solution parameters + %parallelization + md.cluster='none'; + md.np=2; + md.time=1; + md.exclusive=0; + + %statics + md.lowmem=1; + md.eps_rel=0.01; + md.eps_abs=10; %m/yr + md.penalty_offset=4; + md.penalty_melting=10^7; + if md.numberofgrids<1000000, + md.sparsity=.001; + else + md.sparsity=.0001; + end + + %dynamics + md.dt=1*md.yts; %1 year + md.ndt=md.dt*10; + md.artificial_diffusivity=1; + + %control + md.control_type={'drag'}; %'drag', 'B' + md.nsteps=5; + md.tolx=10^-4; + md.maxiter=20; + md.optscal=10; + md.fit='logarithmic'; %'absolute','relative','logarithmic' + md.meanvel=1000/md.yts; %1000 meters/year + md.epsvel=eps; + + + disp(' creating thickness'); + hmin=500; + hmax=500; + ymin=min(md.y); + ymax=max(md.y); + md.thickness=hmax+(hmin-hmax)*(md.y-ymin)/(ymax-ymin); + md.firn_layer=10*ones(md.numberofgrids,1); + md.bed=-di*md.thickness-50; %*10^(-4)*min(0,md.y-900000);; + + %Add bumps to the ice sheet : + pos=find(sqrt((md.x-500000).^2+(md.y-500000).^2)<100000); %for a cicular bump + md.bed(pos)=md.bed(pos)+150*cos(pi/200000*(sqrt((md.y(pos)-500000).^2+(md.x(pos)-500000).^2))); %for a circular bump + + md.surface=md.bed+md.thickness; %the surface follows the bed so the bump is transmitted to the surface + + disp(' creating velocities'); + md.vx_obs=zeros(md.numberofgrids,1); + md.vy_obs=zeros(md.numberofgrids,1); + md.vel_obs=sqrt(md.vx_obs.^2+md.vy_obs.^2); + + disp(' creating drag'); + md.drag_type=2; %0 none 1 plastic 2 viscous + md.drag=200*ones(md.numberofgrids,1); %q=1. + %Take care of iceshelves: no basal drag + pos=find(md.elementoniceshelf); + md.drag(md.elements(pos,:))=0; + md.p=ones(md.numberofelements,1); + md.q=ones(md.numberofelements,1); + + disp(' creating temperature'); + md.observed_temperature=(273-20)*ones(md.numberofgrids,1); + + disp(' creating flow law paramter'); + md.B=paterson(md.observed_temperature); + md.n=3*ones(md.numberofelements,1); + + disp(' creating accumulation rates'); + md.accumulation=ones(md.numberofgrids,1)/md.yts; %1m/a + md.melting=0*ones(md.numberofgrids,1)/md.yts; %1m/a + + %Deal with boundary conditions: + + disp(' boundary conditions for diagnostic model: '); + %Build gridonicefront, array of boundary grids belonging to the icefront: + gridinsideicefront=ArgusContourToMesh(md.elements,md.x,md.y,expread('Front.exp',1),'node',2); + gridonicefront=double(md.gridonboundary & gridinsideicefront); + + md.gridondirichlet_diag=zeros(md.numberofgrids,1); + pos=find(md.gridonboundary & ~gridonicefront);md.gridondirichlet_diag(pos)=1; + md.dirichletvalues_diag=100*ones(md.numberofgrids,2)*[0,0;0,1]; + + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_diag=md.segments(pos,:); + md.neumannvalues_diag=NaN*ones(length(md.segmentonneumann_diag),1); %dynamic boundary conditions (water pressure) + + disp(' boundary conditions for prognostic model: '); + md.gridondirichlet_prog=zeros(md.numberofgrids,1); + md.dirichletvalues_prog=zeros(md.numberofgrids,1); + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_prog=md.segments(pos,:); + md.neumannvalues_prog=zeros(size(md.segmentonneumann_prog,1),1); + md.neumannvalues_prog(:)=NaN; %free radiation + + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_prog2=md.segments(pos,:); + md.neumannvalues_prog2=zeros(size(md.segmentonneumann_prog2,1),1); + md.neumannvalues_prog2(:)=NaN; %free radiation + + disp(' boundary conditions for thermal model: '); + md.gridondirichlet_thermal=ones(md.numberofgrids,1); %surface temperature + md.dirichletvalues_thermal=md.observed_temperature; + md.geothermalflux=zeros(md.numberofgrids,1); + + +% Some Cielo code, ignore. +if strcmp(md.cluster,'yes') + ServerDisconnect; +end Index: /issm/trunk/examples/Bumps/Bump1_surface_bed/runme.m =================================================================== --- /issm/trunk/examples/Bumps/Bump1_surface_bed/runme.m (revision 1) +++ /issm/trunk/examples/Bumps/Bump1_surface_bed/runme.m (revision 1) @@ -0,0 +1,48 @@ +% This file can be run to see the response to a bump on the bed of an ice sheet. The bump is not +% transmitted to the surface of the ice. The results of the three models are saved in order to be +% compared. The geometry is square and the ice sheet is flat. The velocity of the icesheet is +% 100 m/yr in one particular direction on every border. Just run this file in Matlab, i +% with a properly setup Ice code. +% Take care to have the same density and number of layers to compare the results easily. + +% Create macayeal model; + +mdm=model; +mdm=mesh(mdm,'DomainOutline.exp',150000); +mdm=geography(mdm,'',''); +mdm=parameterize(mdm,'Square.par'); +mdm=extrude(mdm,6,3); +mdm=setelementstype(mdm,'macayeal','all'); + +%Compute solution with Ice model +mdm=solve(mdm,'diagnostic','ice'); + +save modelmacayeal mdm + +% Create pattyn model; + +mdp=model; +mdp=mesh(mdp,'DomainOutline.exp',150000); +mdp=geography(mdp,'',''); +mdp=parameterize(mdp,'Square.par'); +mdp=extrude(mdp,6,3); +mdp=setelementstype(mdp,'pattyn','all'); + +%Compute solution with Ice model +mdp=solve(mdp,'diagnostic','ice'); + +save modelpattyn mdp + +% Create stokes model; + +mds=model; +mds=mesh(mds,'DomainOutline.exp',150000); +mds=geography(mds,'',''); +mds=parameterize(mds,'Square.par'); +mds=extrude(mds,6,3); +mds=setelementstype(mds,'pattyn','all','stokes','all'); + +%Compute solution with Ice model +mds=solve(mds,'diagnostic','ice'); + +save modelstokes mds Index: /issm/trunk/examples/Bumps/Bump2_bed/DomainOutline.exp =================================================================== --- /issm/trunk/examples/Bumps/Bump2_bed/DomainOutline.exp (revision 1) +++ /issm/trunk/examples/Bumps/Bump2_bed/DomainOutline.exp (revision 1) @@ -0,0 +1,10 @@ +## Name:domainoutline +## Icon:0 +# Points Count Value +5 1. +# X pos Y pos +0 0 +0 1000000 +1000000 1000000 +1000000 0 +0 0 Index: /issm/trunk/examples/Bumps/Bump2_bed/Front.exp =================================================================== --- /issm/trunk/examples/Bumps/Bump2_bed/Front.exp (revision 1) +++ /issm/trunk/examples/Bumps/Bump2_bed/Front.exp (revision 1) @@ -0,0 +1,6 @@ +## Name:icefront +## Icon:0 +# Points Count Value +1 1. +# X pos Y pos +0 0 Index: /issm/trunk/examples/Bumps/Bump2_bed/Square.par =================================================================== --- /issm/trunk/examples/Bumps/Bump2_bed/Square.par (revision 1) +++ /issm/trunk/examples/Bumps/Bump2_bed/Square.par (revision 1) @@ -0,0 +1,129 @@ + +%Ok, start defining model parameters here + +%material parameters + md.g=9.8; + md.rho_ice=917; + md.rho_water=1023; + di=md.rho_ice/md.rho_water; + md.yts=365*24*3600; + md.heatcapacity=2009; + md.thermalconductivity=2.2; %W/mK + md.beta=9.8*10^-8; + +%Solution parameters + %parallelization + md.cluster='none'; + md.np=2; + md.time=1; + md.exclusive=0; + + %statics + md.lowmem=1; + md.eps_rel=0.01; + md.eps_abs=10; %m/yr + md.penalty_offset=4; + md.penalty_melting=10^7; + if md.numberofgrids<1000000, + md.sparsity=.001; + else + md.sparsity=.0001; + end + + %dynamics + md.dt=1*md.yts; %1 year + md.ndt=md.dt*10; + md.artificial_diffusivity=1; + + %control + md.control_type={'drag'}; %'drag', 'B' + md.nsteps=5; + md.tolx=10^-4; + md.maxiter=20; + md.optscal=10; + md.fit='logarithmic'; %'absolute','relative','logarithmic' + md.meanvel=1000/md.yts; %1000 meters/year + md.epsvel=eps; + + + disp(' creating thickness'); + hmin=500; + hmax=500; + ymin=min(md.y); + ymax=max(md.y); + md.thickness=hmax+(hmin-hmax)*(md.y-ymin)/(ymax-ymin); + md.firn_layer=10*ones(md.numberofgrids,1); + md.bed=-di*md.thickness-50; %*10^(-4)*min(0,md.y-900000);; + + md.surface=md.bed+md.thickness; + + %Add bumps to the ice sheet : + pos=find(sqrt((md.x-500000).^2+(md.y-500000).^2)<100000); %for a cicular bump + md.bed(pos)=md.bed(pos)+150*cos(pi/200000*(sqrt((md.y(pos)-500000).^2+(md.x(pos)-500000).^2))); %for a circular bump + + %Change the thickness to follow the new bed + md.thickness=md.surface-md.bed; + + disp(' creating velocities'); + md.vx_obs=zeros(md.numberofgrids,1); + md.vy_obs=zeros(md.numberofgrids,1); + md.vel_obs=sqrt(md.vx_obs.^2+md.vy_obs.^2); + + disp(' creating drag'); + md.drag_type=2; %0 none 1 plastic 2 viscous + md.drag=10*ones(md.numberofgrids,1); %q=1. + %Take care of iceshelves: no basal drag + pos=find(md.elementoniceshelf); + md.drag(md.elements(pos,:))=0; + md.p=ones(md.numberofelements,1); + md.q=ones(md.numberofelements,1); + + disp(' creating temperature'); + md.observed_temperature=(273-20)*ones(md.numberofgrids,1); + + disp(' creating flow law paramter'); + md.B=paterson(md.observed_temperature); + md.n=3*ones(md.numberofelements,1); + + disp(' creating accumulation rates'); + md.accumulation=ones(md.numberofgrids,1)/md.yts; %1m/a + md.melting=0*ones(md.numberofgrids,1)/md.yts; %1m/a + + %Deal with boundary conditions: + + disp(' boundary conditions for diagnostic model: '); + %Build gridonicefront, array of boundary grids belonging to the icefront: + gridinsideicefront=ArgusContourToMesh(md.elements,md.x,md.y,expread('Front.exp',1),'node',2); + gridonicefront=double(md.gridonboundary & gridinsideicefront); + + md.gridondirichlet_diag=zeros(md.numberofgrids,1); + pos=find(md.gridonboundary & ~gridonicefront);md.gridondirichlet_diag(pos)=1; + md.dirichletvalues_diag=100*ones(md.numberofgrids,2)*[0,0;0,1]; + + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_diag=md.segments(pos,:); + md.neumannvalues_diag=NaN*ones(length(md.segmentonneumann_diag),1); %dynamic boundary conditions (water pressure) + + disp(' boundary conditions for prognostic model: '); + md.gridondirichlet_prog=zeros(md.numberofgrids,1); + md.dirichletvalues_prog=zeros(md.numberofgrids,1); + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_prog=md.segments(pos,:); + md.neumannvalues_prog=zeros(size(md.segmentonneumann_prog,1),1); + md.neumannvalues_prog(:)=NaN; %free radiation + + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_prog2=md.segments(pos,:); + md.neumannvalues_prog2=zeros(size(md.segmentonneumann_prog2,1),1); + md.neumannvalues_prog2(:)=NaN; %free radiation + + disp(' boundary conditions for thermal model: '); + md.gridondirichlet_thermal=ones(md.numberofgrids,1); %surface temperature + md.dirichletvalues_thermal=md.observed_temperature; + md.geothermalflux=zeros(md.numberofgrids,1); + + +% Some Cielo code, ignore. +if strcmp(md.cluster,'yes') + ServerDisconnect; +end Index: /issm/trunk/examples/Bumps/Bump2_bed/runme.m =================================================================== --- /issm/trunk/examples/Bumps/Bump2_bed/runme.m (revision 1) +++ /issm/trunk/examples/Bumps/Bump2_bed/runme.m (revision 1) @@ -0,0 +1,48 @@ +% This file can be run to see the response to a bump on the bed of an ice sheet. The bump is not +% transmitted to the surface of the ice. The results of the three models are saved in order to be +% compared. The geometry is square and the ice sheet is flat. The velocity of the icesheet is +% 100 m/yr in one particular direction on every border. Just run this file in Matlab, i +% with a properly setup Ice code. +% Take care to have the same density and number of layers to compare the results easily. + +% Create macayeal model; + +mdm=model; +mdm=mesh(mdm,'DomainOutline.exp',150000); +mdm=geography(mdm,'',''); +mdm=parameterize(mdm,'Square.par'); +mdm=extrude(mdm,6,3); +mdm=setelementstype(mdm,'macayeal','all'); + +%Compute solution with Ice model +mdm=solve(mdm,'diagnostic','ice'); + +save modelmacayeal mdm + +% Create pattyn model; + +mdp=model; +mdp=mesh(mdp,'DomainOutline.exp',150000); +mdp=geography(mdp,'',''); +mdp=parameterize(mdp,'Square.par'); +mdp=extrude(mdp,6,3); +mdp=setelementstype(mdp,'pattyn','all'); + +%Compute solution with Ice model +mdp=solve(mdp,'diagnostic','ice'); + +save modelpattyn mdp + +% Create stokes model; + +mds=model; +mds=mesh(mds,'DomainOutline.exp',150000); +mds=geography(mds,'',''); +mds=parameterize(mds,'Square.par'); +mds=extrude(mds,6,3); +mds=setelementstype(mds,'pattyn','all','stokes','all'); + +%Compute solution with Ice model +mds=solve(mds,'diagnostic','ice'); + +save modelstokes mds Index: sm/trunk/examples/README.txt =================================================================== --- /issm/trunk/examples/README.txt (revision 28275) +++ (revision ) @@ -1,10 +1,0 @@ -To run the following examples, see the accompanying tutorials that can be found within the -documentation tab on the ISSM webpages: https://issm.jpl.nasa.gov/documentation/tutorials/ - -The tutorials were created to be parallel to lectures given, -but the tutorials are up to date on their version of ISSM. If more help is -needed see the User manual also found under the documentation tab -(https://issm.jpl.nasa.gov/documentation/). - -Make sure to download the required datasets -see https://issm.jpl.nasa.gov/documentation/tutorials/datasets/) Index: /issm/trunk/examples/SquareIceShelf/Front.exp =================================================================== --- /issm/trunk/examples/SquareIceShelf/Front.exp (revision 28275) +++ /issm/trunk/examples/SquareIceShelf/Front.exp (revision 1) @@ -1,10 +1,10 @@ -## Name:icefront +## Name: ## Icon:0 -# Points Count Value -5 1. -# X pos Y pos --1000 999999 --1000 1100000 -1100000 1100000 -1100000 999999 --1000 999999 +# Points Count Value +5 1. +# X pos Y pos +-1000 990000 +1001000 990000 +1001000 1001000 +-1000 1001000 +-1000 990000 Index: /issm/trunk/examples/SquareIceShelf/README =================================================================== --- /issm/trunk/examples/SquareIceShelf/README (revision 1) +++ /issm/trunk/examples/SquareIceShelf/README (revision 1) @@ -0,0 +1,6 @@ +md=model; +md=mesh(md,'DomainOutline.exp',50000); +md=geography(md,'Shelf.exp',''); +md=parameterize(md,'Square.par'); +md.acceleration=1; +md=solve(md,'diagnostic','ice'); Index: /issm/trunk/examples/SquareIceShelf/Shelf.exp =================================================================== --- /issm/trunk/examples/SquareIceShelf/Shelf.exp (revision 1) +++ /issm/trunk/examples/SquareIceShelf/Shelf.exp (revision 1) @@ -0,0 +1,10 @@ +## Name: +## Icon:0 +# Points Count Value +5 1. +# X pos Y pos +-1000 00000 +1001000 00000 +1001000 1001000 +-1000 1001000 +-1000 00000 Index: /issm/trunk/examples/SquareIceShelf/Square.par =================================================================== --- /issm/trunk/examples/SquareIceShelf/Square.par (revision 28275) +++ /issm/trunk/examples/SquareIceShelf/Square.par (revision 1) @@ -1,30 +1,125 @@ -%Start defining model parameters here -disp(' creating thickness'); -hmin=300; -hmax=1000; -ymin=min(md.mesh.y); -ymax=max(md.mesh.y); -md.geometry.thickness = hmax+(hmin-hmax)*(md.mesh.y-ymin)/(ymax-ymin); -md.geometry.base = -md.materials.rho_ice/md.materials.rho_water*md.geometry.thickness; -md.geometry.surface = md.geometry.base+md.geometry.thickness; +%Ok, start defining model parameters here -disp(' creating drag'); -md.friction.coefficient=200*ones(md.mesh.numberofvertices,1); -md.friction.coefficient(find(md.mask.ocean_levelset<0.))=0.; -md.friction.p=ones(md.mesh.numberofelements,1); -md.friction.q=ones(md.mesh.numberofelements,1); +%material parameters + md.g=9.8; + md.rho_ice=917; + md.rho_water=1023; + di=md.rho_ice/md.rho_water; + md.yts=365*24*3600; + md.heatcapacity=2009; + md.thermalconductivity=2.2; %W/mK + md.beta=9.8*10^-8; -disp(' initial velocity'); -md.initialization.vx=zeros(md.mesh.numberofvertices,1); -md.initialization.vy=zeros(md.mesh.numberofvertices,1); -md.initialization.vz=zeros(md.mesh.numberofvertices,1); -md.initialization.vel=zeros(md.mesh.numberofvertices,1); +%Solution parameters + %parallelization + md.cluster='no'; + md.cluster_name='cosmos'; + md.np=2; + md.time=1; + md.exclusive=0; -disp(' creating flow law parameter'); -md.materials.rheology_B=paterson((273-20)*ones(md.mesh.numberofvertices,1)); -md.materials.rheology_n=3*ones(md.mesh.numberofelements,1); -md.damage.D=zeros(md.mesh.numberofvertices,1); + %statics + md.lowmem=1; + md.eps_rel=0.01; + md.eps_abs=10; + md.penalty_offset=3; + md.penalty_melting=10^7; + if md.numberofgrids<1000000, + md.sparsity=.001; + else + md.sparsity=.0001; + end -disp(' creating boundary conditions'); -md=SetIceShelfBC(md,'Front.exp'); + %dynamics + md.dt=1*md.yts; %1 year + md.ndt=md.dt*10; + md.artificial_diffusivity=1; + + %control + md.control_type={'drag'}; %'drag', 'B' + md.nsteps=5; + md.tolx=10^-4; + md.maxiter=20; + md.optscal=10; + md.fit='logarithmic'; %'absolute','relative','logarithmic' + md.meanvel=1000/md.yts; %1000 meters/year + md.epsvel=eps; + + + disp(' creating thickness'); + hmin=300; + hmax=1000; + ymin=min(md.y); + ymax=max(md.y); + md.thickness=hmax+(hmin-hmax)*(md.y-ymin)/(ymax-ymin); + md.firn_layer=10*ones(md.numberofgrids,1); + md.bed=-di*md.thickness; + md.surface=md.bed+md.thickness; + + disp(' creating velocities'); + md.vx_obs=zeros(md.numberofgrids,1); + md.vy_obs=zeros(md.numberofgrids,1); + md.vel_obs=sqrt(md.vx_obs.^2+md.vy_obs.^2); + + disp(' creating drag'); + md.drag_type=2; %0 none 1 plastic 2 viscous + md.drag=200*ones(md.numberofgrids,1); %q=1. + %Take care of iceshelves: no basal drag + pos=find(md.elementoniceshelf); + md.drag(md.elements(pos,:))=0; + md.p=ones(md.numberofelements,1); + md.q=ones(md.numberofelements,1); + + disp(' creating temperature'); + md.observed_temperature=(273-20)*ones(md.numberofgrids,1); + + disp(' creating flow law paramter'); + md.B=paterson(md.observed_temperature); + md.n=3*ones(md.numberofelements,1); + + disp(' creating accumulation rates'); + md.accumulation=ones(md.numberofgrids,1)/md.yts; %1m/a + md.melting=0*ones(md.numberofgrids,1)/md.yts; %1m/a + + %Deal with boundary conditions: + + disp(' boundary conditions for diagnostic model: '); + %Build gridonicefront, array of boundary grids belonging to the icefront: + gridinsideicefront=ArgusContourToMesh(md.elements,md.x,md.y,expread('Front.exp',1),'node',2); + gridonicefront=double(md.gridonboundary & gridinsideicefront); + + md.gridondirichlet_diag=zeros(md.numberofgrids,1); + pos=find(md.gridonboundary & ~gridonicefront);md.gridondirichlet_diag(pos)=1; + md.dirichletvalues_diag=zeros(md.numberofgrids,2); + + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_diag=md.segments(pos,:); + md.neumannvalues_diag=NaN*ones(length(md.segmentonneumann_diag),1); %dynamic boundary conditions (water pressure) + + disp(' boundary conditions for prognostic model: '); + md.gridondirichlet_prog=zeros(md.numberofgrids,1); + md.dirichletvalues_prog=zeros(md.numberofgrids,1); + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_prog=md.segments(pos,:); + md.neumannvalues_prog=zeros(size(md.segmentonneumann_prog,1),1); + md.neumannvalues_prog(:)=NaN; %free radiation + + pos=find(gridonicefront(md.segments(:,1)) | gridonicefront(md.segments(:,2))); + md.segmentonneumann_prog2=md.segments(pos,:); + md.neumannvalues_prog2=zeros(size(md.segmentonneumann_prog2,1),1); + md.neumannvalues_prog2(:)=NaN; %free radiation + + disp(' boundary conditions for thermal model: '); + md.gridondirichlet_thermal=ones(md.numberofgrids,1); %surface temperature + md.dirichletvalues_thermal=md.observed_temperature; + md.geothermalflux=zeros(md.numberofgrids,1); + pos=find(md.elementonicesheet);md.geothermalflux(md.elements(pos,:))=50*10^-3; %50 mW/m^2 + + + + +% Some Cielo code, ignore. +if strcmp(md.cluster,'yes') + ServerDisconnect; +end Index: sm/trunk/examples/SquareIceShelf/Square.py =================================================================== --- /issm/trunk/examples/SquareIceShelf/Square.py (revision 28275) +++ (revision ) @@ -1,32 +1,0 @@ -import numpy as np -from paterson import paterson -from SetIceShelfBC import SetIceShelfBC -#Start defining model parameters here - -print(' creating thickness') -hmin = 300 -hmax = 1000 -ymin = np.nanmin(md.mesh.y) -ymax = np.nanmax(md.mesh.y) -md.geometry.thickness = hmax + (hmin - hmax) * (md.mesh.y - ymin) / (ymax - ymin) -md.geometry.base = - md.materials.rho_ice / md.materials.rho_water * md.geometry.thickness -md.geometry.surface = md.geometry.base + md.geometry.thickness - -print(' creating drag') -md.friction.coefficient = np.where(md.mask.ocean_levelset < 0., 0, 200) -md.friction.p = np.ones((md.mesh.numberofelements)) -md.friction.q = np.ones((md.mesh.numberofelements)) - -print(' initial velocity') -md.initialization.vx = np.zeros((md.mesh.numberofvertices)) -md.initialization.vy = np.zeros((md.mesh.numberofvertices)) -md.initialization.vz = np.zeros((md.mesh.numberofvertices)) -md.initialization.vel = np.zeros((md.mesh.numberofvertices)) - -print(' creating flow law parameter') -md.materials.rheology_B = paterson((273 - 20) * np.ones((md.mesh.numberofvertices))) -md.materials.rheology_n = 3 * np.ones((md.mesh.numberofelements)) -md.damage.D = np.zeros((md.mesh.numberofvertices)) - -print(' creating boundary conditions') -md = SetIceShelfBC(md, 'Front.exp') Index: sm/trunk/examples/SquareIceShelf/runme.m =================================================================== --- /issm/trunk/examples/SquareIceShelf/runme.m (revision 28275) +++ (revision ) @@ -1,7 +1,0 @@ -md=model; -md=triangle(md,'DomainOutline.exp',100000); -md=setmask(md,'all',''); -md=parameterize(md,'Square.par'); -md=setflowequation(md,'SSA','all'); -md.cluster=generic('name',oshostname,'np',2); -md=solve(md,'Stressbalance'); Index: sm/trunk/examples/SquareIceShelf/runme.py =================================================================== --- /issm/trunk/examples/SquareIceShelf/runme.py (revision 28275) +++ (revision ) @@ -1,16 +1,0 @@ -from model import * -from triangle import triangle -from setmask import setmask -from parameterize import parameterize -from setflowequation import setflowequation -from generic import generic -from socket import gethostname -from solve import solve - -md = model() -md = triangle(md, 'DomainOutline.exp', 100000) -md = setmask(md, 'all', '') -md = parameterize(md, 'Square.py') -md = setflowequation(md, 'SSA', 'all') -md.cluster = generic('name', gethostname(), 'np', 2) -md = solve(md, 'Stressbalance') Index: /issm/trunk/externalpackages/Makefile =================================================================== --- /issm/trunk/externalpackages/Makefile (revision 1) +++ /issm/trunk/externalpackages/Makefile (revision 1) @@ -0,0 +1,29 @@ +all: + cd metis && ./install.sh + cd triangle && ./install.shclean: + cd mpich2 && ./install.sh + cd petsc && ./install.sh + cd slepc && ./install.sh + cd dakota && ./install.sh + cd doxygen && ./install.sh + cd gdal && ./install.sh + cd m2html && ./install.sh + cd mtoc && ./install.sh + cd suitesparse && ./install.sh + cd qhull && ./install.sh + cd netcdf && ./install.sh + +clean: + rm -rf dakota/install dakota/src + rm -rf doxygen/install doxygen/src + rm -rf gdal/install gdal/src + rm -rf m2html/install m2html/src + rm -rf metis/install metis/src + rm -rf mpich2/install mpich2/src + rm -rf mtoc/install mtoc/src + rm -rf petsc/install petsc/src + rm -rf slepc/install slepc/src + rm -rf suitesparse/install suitesparse/src + rm -rf triangle/install triangle/src + rm -rf qhull/install qhull/src + rm -rf netcdf/install netcdf/src Index: /issm/trunk/externalpackages/README =================================================================== --- /issm/trunk/externalpackages/README (revision 1) +++ /issm/trunk/externalpackages/README (revision 1) @@ -0,0 +1,13 @@ +To install all the ISSM libraries: + + +1/ source the ISSM_DIR/Etc/environment.sh file. This will set up all the necessary +environment variables in your shell. + +2/ type make, or go into each library folder and type install.sh . +We advise to do the latter, should any problems arise during the libraries compilation, +users will be able to spot the problematic library more easily. Just remember to compile +the libraries in the same order as the Makefile. + +3/ There is no guarantee the compilation will work on all systems. A lot of tweaking of the +install.sh files will probably be involved. Especially, the configuration part of the install. Index: sm/trunk/externalpackages/dakota/install-4.2-altix64-cosmos.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-4.2-altix64-cosmos.sh (revision 28275) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C configs/4.2/ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H configs/4.2/ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C configs/4.2/NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C configs/4.2/NonDSampling.C.patch -patch src/src/NonDLocalReliability.C configs/4.2/NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C configs/4.2/NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp configs/4.2/LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas=/opt/intel/mkl/9.1.023/lib/64/libmkl.so \ - --with-lapack=/opt/intel/mkl/9.1.023/lib/64/libmkl_lapack.so -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk/externalpackages/dakota/install-4.2-discover.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-4.2-discover.sh (revision 28275) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C configs/4.2/ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H configs/4.2/ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C configs/4.2/NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C configs/4.2/NonDSampling.C.patch -patch src/src/NonDLocalReliability.C configs/4.2/NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C configs/4.2/NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp configs/4.2/LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ ---prefix="$ISSM_DIR/externalpackages/dakota/install/" \ ---without-graphics \ ---with-pic \ ---disable-mpi \ ---with-blas="-L/usr/local/intel/mkl/10.1.2.024/lib/64 -lmkl_lapack -lmkl -lguide -lpthread" \ ---with-lapack="-L/usr/local/intel/mkl/10.1.2.024/lib/64 -lmkl_lapack -lmkl -lguide -lpthread" -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk/externalpackages/dakota/install-4.2-linux64-cloud.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-4.2-linux64-cloud.sh (revision 28275) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C configs/4.2/ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H configs/4.2/ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C configs/4.2/NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C configs/4.2/NonDSampling.C.patch -patch src/src/NonDLocalReliability.C configs/4.2/NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C configs/4.2/NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp configs/4.2/LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas=/usr/lib/libblas.so \ - --with-lapack=/usr/lib/liblapack.so -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk/externalpackages/dakota/install-4.2-linux64-murdo.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-4.2-linux64-murdo.sh (revision 28275) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C configs/4.2/ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H configs/4.2/ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C configs/4.2/NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C configs/4.2/NonDSampling.C.patch -patch src/src/NonDLocalReliability.C configs/4.2/NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C configs/4.2/NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp configs/4.2/LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas=/usr/lib64/libblas.so.3.1.1 \ - --with-lapack=/usr/lib64/liblapack.so.3.1.1 -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk/externalpackages/dakota/install-4.2-macosx64.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-4.2-macosx64.sh (revision 28275) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C configs/4.2/ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H configs/4.2/ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C configs/4.2/NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C configs/4.2/NonDSampling.C.patch -patch src/src/NonDLocalReliability.C configs/4.2/NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C configs/4.2/NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp configs/4.2/LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas="-L$ISSM_DIR/externalpackages/petsc/install/lib -lfblas " \ - --with-lapack="-L$ISSM_DIR/externalpackages/petsc/install/lib -lflapack " -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2 -D_NONSTD_SOURCE/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk/externalpackages/dakota/install-5.2-discover.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.2-discover.sh (revision 28275) +++ (revision ) @@ -1,52 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/Dakota_5_2.src.tar.gz' 'Dakota_5_2.src.tar.gz' - -#Untar -tar -zxvf Dakota_5_2.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C configs/5.2/ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H configs/5.2/ParallelLibrary.H.patch -#patch src/src/NIDRProblemDescDB.C configs/5.2/NIDRProblemDescDB.C.patch # causes segfault in 5.2 -patch src/src/NonDSampling.C configs/5.2/NonDSampling.C.patch -patch src/src/NonDLocalReliability.C configs/5.2/NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C configs/5.2/NonDUnilevelRBDO.C.patch # source not even used? -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.2/pecos_global_defs.hpp.patch - -#Configure dakota -cd src -./configure \ ---prefix="$ISSM_DIR/externalpackages/dakota/install/" \ ---without-graphics \ ---with-pic \ ---disable-mpi \ ---with-plugin \ ---with-blas="-L/usr/local/intel/mkl/10.1.2.024/lib/64 -lmkl_lapack -lmkl -lguide -lpthread" \ ---with-lapack="-L/usr/local/intel/mkl/10.1.2.024/lib/64 -lmkl_lapack -lmkl -lguide -lpthread" - -cd .. - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-5.2-linux64-caladan.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.2-linux64-caladan.sh (revision 28275) +++ (revision ) @@ -1,48 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/Dakota_5_2.src.tar.gz' 'Dakota_5_2.src.tar.gz' - -#Untar -tar -zxvf Dakota_5_2.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C configs/5.2/ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H configs/5.2/ParallelLibrary.H.patch -patch src/src/NonDSampling.C configs/5.2/NonDSampling.C.patch -patch src/src/NonDLocalReliability.C configs/5.2/NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C configs/5.2/NonDUnilevelRBDO.C.patch # source not even used? -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.2/pecos_global_defs.hpp.patch -patch src/packages/teuchos/src/Teuchos_ConfigDefs.hpp configs/5.2/Teuchos_ConfigDefs.hpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas="$ISSM_DIR/externalpackages/petsc/install/lib/libfblas.a" \ - --with-lapack="$ISSM_DIR/externalpackages/petsc/install/lib/libflapack.a" - -#Compile and install dakota -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-5.2-linux64-larsen.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.2-linux64-larsen.sh (revision 28275) +++ (revision ) @@ -1,49 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/Dakota_5_2.src.tar.gz' 'Dakota_5_2.src.tar.gz' - -#Untar -tar -zxvf Dakota_5_2.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C configs/5.2/ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H configs/5.2/ParallelLibrary.H.patch -patch src/src/NonDSampling.C configs/5.2/NonDSampling.C.patch -patch src/src/NonDLocalReliability.C configs/5.2/NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C configs/5.2/NonDUnilevelRBDO.C.patch # source not even used? -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.2/pecos_global_defs.hpp.patch -patch src/packages/teuchos/src/Teuchos_ConfigDefs.hpp configs/5.2/Teuchos_ConfigDefs.hpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-plugin \ - --with-blas="$ISSM_DIR/externalpackages/petsc/install/lib/libfblas.a" \ - --with-lapack="$ISSM_DIR/externalpackages/petsc/install/lib/libflapack.a" - -#Compile and install dakota -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-5.2-macosx64.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.2-macosx64.sh (revision 28275) +++ (revision ) @@ -1,51 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/Dakota_5_2.src.tar.gz' 'Dakota_5_2.src.tar.gz' - -#Untar -tar -zxvf Dakota_5_2.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C configs/5.2/ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H configs/5.2/ParallelLibrary.H.patch -#patch src/src/NIDRProblemDescDB.C configs/5.2/NIDRProblemDescDB.C.patch # causes segfault in 5.2 -patch src/src/NonDSampling.C configs/5.2/NonDSampling.C.patch -patch src/src/NonDLocalReliability.C configs/5.2/NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C configs/5.2/NonDUnilevelRBDO.C.patch # source not even used? -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.2/pecos_global_defs.hpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-plugin \ - --with-blas="-L$ISSM_DIR/externalpackages/petsc/install/lib -lfblas " \ - --with-lapack="-L$ISSM_DIR/externalpackages/petsc/install/lib -lflapack " -cd .. - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-5.3.1-linux64-caladan.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.3.1-linux64-caladan.sh (revision 28275) +++ (revision ) @@ -1,51 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf build -rm -rf install -mkdir src build install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-5.3.1-public-src.tar.gz' 'dakota-5.3.1-public-src.tar.gz' - -#Untar -tar -zxvf dakota-5.3.1-public-src.tar.gz - -#Move Dakota to src directory -mv dakota-5.3.1.src/* src -rm -rf dakota-5.3.1.src - -#Set up Dakota cmake variables and config -export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src -export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build -cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake -patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/5.3.1/BuildDakotaCustom.cmake.patch -patch $DAK_SRC/cmake/DakotaDev.cmake configs/5.3.1/DakotaDev.cmake.patch -#patch $DAK_SRC/CMakeLists.txt configs/5.3.1/CMakeLists.txt.patch - -#Apply patches -patch src/src/ParallelLibrary.cpp configs/5.3.1/ParallelLibrary.cpp.patch -patch src/src/ParallelLibrary.hpp configs/5.3.1/ParallelLibrary.hpp.patch -patch src/src/NonDSampling.cpp configs/5.3.1/NonDSampling.cpp.patch -patch src/src/NonDLocalReliability.cpp configs/5.3.1/NonDLocalReliability.cpp.patch -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.3.1/pecos_global_defs.hpp.patch - -#Configure dakota -cd $DAK_BUILD -cmake -C $DAK_SRC/cmake/BuildDakotaCustom.cmake -C $DAK_SRC/cmake/DakotaDev.cmake $DAK_SRC -DBLAS_LIBS=$ISSM_DIR/externalpackages/petsc/install/lib/libfblas.a -DLAPACK_LIBS=$ISSM_DIR/externalpackages/petsc/install/lib/libflapack.a -cd .. - -#Compile and install dakota -cd $DAK_BUILD -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-5.3.1-linux64.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.3.1-linux64.sh (revision 28275) +++ (revision ) @@ -1,51 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf build -rm -rf install -mkdir src build install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-5.3.1-public-src.tar.gz' 'dakota-5.3.1-public-src.tar.gz' - -#Untar -tar -zxvf dakota-5.3.1-public-src.tar.gz - -#Move Dakota to src directory -mv dakota-5.3.1.src/* src -rm -rf dakota-5.3.1.src - -#Set up Dakota cmake variables and config -export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src -export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build -cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake -patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/5.3.1/BuildDakotaCustom.cmake.patch -patch $DAK_SRC/cmake/DakotaDev.cmake configs/5.3.1/DakotaDev.cmake.patch -#patch $DAK_SRC/CMakeLists.txt configs/5.3.1/CMakeLists.txt.patch - -#Apply patches -patch src/src/ParallelLibrary.cpp configs/5.3.1/ParallelLibrary.cpp.patch -patch src/src/ParallelLibrary.hpp configs/5.3.1/ParallelLibrary.hpp.patch -patch src/src/NonDSampling.cpp configs/5.3.1/NonDSampling.cpp.patch -patch src/src/NonDLocalReliability.cpp configs/5.3.1/NonDLocalReliability.cpp.patch -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.3.1/pecos_global_defs.hpp.patch - -#Configure dakota -cd $DAK_BUILD -cmake -C $DAK_SRC/cmake/BuildDakotaCustom.cmake -C $DAK_SRC/cmake/DakotaDev.cmake $DAK_SRC -cd .. - -#Compile and install dakota -cd $DAK_BUILD -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-5.3.1-lonestar.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.3.1-lonestar.sh (revision 28275) +++ (revision ) @@ -1,51 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf build -rm -rf install -mkdir src build install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-5.3.1-public-src.tar.gz' 'dakota-5.3.1-public-src.tar.gz' - -#Untar -tar -zxvf dakota-5.3.1-public-src.tar.gz - -#Move Dakota to src directory -mv dakota-5.3.1.src/* src -rm -rf dakota-5.3.1.src - -#Set up Dakota cmake variables and config -export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src -export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build -cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake -patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/5.3.1/BuildDakotaCustom.cmake.patch -patch $DAK_SRC/cmake/DakotaDev.cmake configs/5.3.1/DakotaDev.cmake.patch -patch $DAK_SRC/CMakeLists.txt configs/5.3.1/CMakeLists.txt.lonestar.patch - -#Apply patches -patch src/src/ParallelLibrary.cpp configs/5.3.1/ParallelLibrary.cpp.patch -patch src/src/ParallelLibrary.hpp configs/5.3.1/ParallelLibrary.hpp.patch -patch src/src/NonDSampling.cpp configs/5.3.1/NonDSampling.cpp.patch -patch src/src/NonDLocalReliability.cpp configs/5.3.1/NonDLocalReliability.cpp.patch -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.3.1/pecos_global_defs.hpp.patch - -#Configure dakota -cd $DAK_BUILD -cmake -C $DAK_SRC/cmake/BuildDakotaCustom.cmake -C $DAK_SRC/cmake/DakotaDev.cmake $DAK_SRC -cd .. - -#Compile and install dakota -cd $DAK_BUILD -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-5.3.1-macosx64-snowleopard.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.3.1-macosx64-snowleopard.sh (revision 28275) +++ (revision ) @@ -1,62 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf build -rm -rf install -mkdir src build install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-5.3.1-public-src.tar.gz' 'dakota-5.3.1-public-src.tar.gz' - -#Untar -tar -zxvf dakota-5.3.1-public-src.tar.gz - -#Move Dakota to src directory -mv dakota-5.3.1.src/* src -rm -rf dakota-5.3.1.src - -#Set up Dakota cmake variables and config -export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src -export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build -cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake -patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/5.3.1/BuildDakotaCustom.cmake.mac.patch -patch $DAK_SRC/cmake/DakotaDev.cmake configs/5.3.1/DakotaDev.cmake.patch - -#Apply patches -patch src/src/ParallelLibrary.cpp configs/5.3.1/ParallelLibrary.cpp.patch -patch src/src/ParallelLibrary.hpp configs/5.3.1/ParallelLibrary.hpp.patch -patch src/src/NonDSampling.cpp configs/5.3.1/NonDSampling.cpp.patch -patch src/src/NonDLocalReliability.cpp configs/5.3.1/NonDLocalReliability.cpp.patch -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.3.1/pecos_global_defs.hpp.patch - -export BOOST_ROOT=$ISSM_DIR/externalpackages/boost/install - -#Configure dakota -# Set your local gcc compiler here -cd $DAK_BUILD -cmake -DBoost_NO_BOOST_CMAKE=TRUE \ - -DBoost_NO_SYSTEM_PATHS=TRUE \ - -DBOOST_ROOT:PATHNAME=$BOOST_ROOT \ - -DBoost_LIBRARY_DIRS:FILEPATH=${BOOST_ROOT}/lib \ - -DCMAKE_CXX_COMPILER=/usr/bin/g++ -DCMAKE_CC_COMPILER=/usr/bin/gcc \ - -DCMAKE_Fortran_COMPILER=/usr/local/gfortran/bin/x86_64-apple-darwin10-gfortran \ - -C $DAK_SRC/cmake/BuildDakotaCustom.cmake -C $DAK_SRC/cmake/DakotaDev.cmake $DAK_SRC - -#-DCMAKE_CXX_COMPILER=/usr/local/gfortran/bin/x86_64-apple-darwin10-g++ -DCMAKE_Fortran_COMPILER=/usr/local/gfortran/bin/x86_64-apple-darwin10-gfortran - -cd .. - -#Compile and install dakota -cd $DAK_BUILD -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-5.3.1-macosx64-yosemite.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.3.1-macosx64-yosemite.sh (revision 28275) +++ (revision ) @@ -1,51 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf build -rm -rf install -mkdir src build install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-5.3.1-public-src.tar.gz' 'dakota-5.3.1-public-src.tar.gz' - -#Untar -tar -zxvf dakota-5.3.1-public-src.tar.gz - -#Move Dakota to src directory -mv dakota-5.3.1.src/* src -rm -rf dakota-5.3.1.src - -#Set up Dakota cmake variables and config -export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src -export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build -cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake -patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/5.3.1/BuildDakotaCustom.cmake.patch -patch $DAK_SRC/cmake/DakotaDev.cmake configs/5.3.1/DakotaDev.cmake.patch -patch $DAK_SRC/CMakeLists.txt configs/5.3.1/CMakeLists.txt.patch - -#Apply patches -patch src/src/ParallelLibrary.cpp configs/5.3.1/ParallelLibrary.cpp.patch -patch src/src/ParallelLibrary.hpp configs/5.3.1/ParallelLibrary.hpp.patch -patch src/src/NonDSampling.cpp configs/5.3.1/NonDSampling.cpp.patch -patch src/src/NonDLocalReliability.cpp configs/5.3.1/NonDLocalReliability.cpp.patch -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.3.1/pecos_global_defs.hpp.patch - -#Configure dakota -cd $DAK_BUILD -cmake -D CMAKE_C_COMPILER=/usr/local/gfortran/bin/gcc -D CMAKE_CXX_COMPILER=/usr/local/gfortran/bin/g++ -D CMAKE_Fortran_COMPILER=/usr/local/gfortran/bin/gfortran -D LDFLAGS="-std=gnu++0x" -C $DAK_SRC/cmake/BuildDakotaCustom.cmake -C $DAK_SRC/cmake/DakotaDev.cmake $DAK_SRC -cd .. - -#Compile and install dakota -cd $DAK_BUILD -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-5.3.1-macosx64.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-5.3.1-macosx64.sh (revision 28275) +++ (revision ) @@ -1,62 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf build -rm -rf install -mkdir src build install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-5.3.1-public-src.tar.gz' 'dakota-5.3.1-public-src.tar.gz' - -#Untar -tar -zxvf dakota-5.3.1-public-src.tar.gz - -#Move Dakota to src directory -mv dakota-5.3.1.src/* src -rm -rf dakota-5.3.1.src - -#Set up Dakota cmake variables and config -export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src -export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build -cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake -patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/5.3.1/BuildDakotaCustom.cmake.mac.patch -patch $DAK_SRC/cmake/DakotaDev.cmake configs/5.3.1/DakotaDev.cmake.patch -patch $DAK_SRC/CMakeLists.txt configs/5.3.1/CMakeLists.txt.patch - -#Apply patches -patch src/src/ParallelLibrary.cpp configs/5.3.1/ParallelLibrary.cpp.patch -patch src/src/ParallelLibrary.hpp configs/5.3.1/ParallelLibrary.hpp.patch -patch src/src/NonDSampling.cpp configs/5.3.1/NonDSampling.cpp.patch -patch src/src/NonDLocalReliability.cpp configs/5.3.1/NonDLocalReliability.cpp.patch -patch src/packages/pecos/src/pecos_global_defs.hpp configs/5.3.1/pecos_global_defs.hpp.patch - -export BOOST_ROOT=$ISSM_DIR/externalpackages/boost/install - -#Configure dakota -# Set your local gcc compiler here -cd $DAK_BUILD -cmake -DBoost_NO_BOOST_CMAKE=TRUE \ - -DBoost_NO_SYSTEM_PATHS=TRUE \ - -DBOOST_ROOT:PATHNAME=$BOOST_ROOT \ - -DBoost_LIBRARY_DIRS:FILEPATH=${BOOST_ROOT}/lib \ - -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CC_COMPILER=gcc \ - -C $DAK_SRC/cmake/BuildDakotaCustom.cmake -C $DAK_SRC/cmake/DakotaDev.cmake $DAK_SRC - -#-DCMAKE_CXX_COMPILER=/usr/local/gfortran/bin/x86_64-apple-darwin10-g++ -DCMAKE_Fortran_COMPILER=/usr/local/gfortran/bin/x86_64-apple-darwin10-gfortran - -cd .. - -#Compile and install dakota -cd $DAK_BUILD -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-6.2-discover.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-6.2-discover.sh (revision 28275) +++ (revision ) @@ -1,64 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf build -rm -rf install -mkdir src build install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-6.2-public.src.tar.gz' 'dakota-6.2-public-src.tar.gz' - -#Untar -tar -zxvf dakota-6.2-public-src.tar.gz - -#Move Dakota to src directory -mv dakota-6.2.0.src/* src -rm -rf dakota-6.2.0.src - -#Set up Dakota cmake variables and config -export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src -export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build -export MPIHOME=$ISSM_DIR/externalpackages/mpich/install -cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake -patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/6.2/BuildDakotaCustom.cmake.discover.patch -patch $DAK_SRC/cmake/DakotaDev.cmake configs/6.2/DakotaDev.cmake.patch -patch $DAK_SRC/CMakeLists.txt configs/6.2/CMakeLists.txt.discover20.patch - -#Apply patches -patch src/src/NonDSampling.cpp configs/6.2/NonDSampling.cpp.patch -patch src/src/NonDLocalReliability.cpp configs/6.2/NonDLocalReliability.cpp.patch -patch src/packages/pecos/src/pecos_global_defs.hpp configs/6.2/pecos_global_defs.hpp.patch - -#Configure dakota -cd $DAK_BUILD - -cmake -D CMAKE_C_COMPILER=mpicc \ - -D CMAKE_CXX_COMPILER=mpicxx \ - -D CMAKE_Fortran_COMPILER=/usr/bin/gfortran \ - -DCMAKE_CXX_FLAGS="-lstdc++ -lirc -lsvml -limf" \ - -DBUILD_SHARED_LIBS=ON \ - -DBUILD_STATIC_LIBS=OFF \ - -DBoost_NO_BOOST_CMAKE=TRUE \ - -DHAVE_ACRO=OFF \ - -DHAVE_JEGA=OFF \ - -DHAVE_QUESO=ON \ - -DDAKOTA_HAVE_GSL=ON \ - -C $DAK_SRC/cmake/BuildDakotaCustom.cmake \ - -C $DAK_SRC/cmake/DakotaDev.cmake \ - $DAK_SRC -cd .. - -#Compile and install dakota -cd $DAK_BUILD -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-6.2-linux-static.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-6.2-linux-static.sh (revision 28275) +++ (revision ) @@ -1,94 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="6.2" - -PREFIX="${ISSM_DIR}/externalpackages/dakota/install" # Set to location where external package should be installed - -# Find libgfortran and libgcc so we do not have to hardcode them -# -# TODO: -# - Move this to etc/environment.sh -# - Test if -static-libgfortran flag will avoid all of this. -# - Otherwise, refactor this to work with other gfortran installations. -# -echo "Finding libgfortran..." -LIBGFORTRAN=$(find /usr -name libgfortran* 2>/dev/null | egrep -n libgfortran.a | sed "s/[0-9]*://g" | head -1) -LIBGFORTRAN_ROOT=${LIBGFORTRAN%/*} -LIBGCC=$(find ${LIBGFORTRAN_ROOT} -name libgcc* 2>/dev/null | egrep -n libgcc.a | sed "s/[0-9]*://g" | head -1) - -## Environment -# -export BLAS_LIBS="-L${BLAS_ROOT}/lib -lfblas ${LIBGFORTRAN_ROOT}/libgfortran.a ${LIBGFORTRAN_ROOT}/libquadmath.a ${LIBGCC}" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it -export DAK_BUILD=${ISSM_DIR}/externalpackages/dakota/build # DO NOT CHANGE THIS -export DAK_INSTALL=${PREFIX} # DO NOT CHANGE THIS -export DAK_SRC=${ISSM_DIR}/externalpackages/dakota/src # DO NOT CHANGE THIS -export LAPACK_LIBS="-L${LAPACK_ROOT}/lib -lflapack -L/usr/lib/x86_64-linux-gnu ${LIBGFORTRAN_ROOT}/libgfortran.a ${LIBGFORTRAN_ROOT}/libquadmath.a ${LIBGCC}" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it - -# Cleanup -rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} -mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} - -# Download source -${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz" - -# Unpack source -tar -zxvf dakota-${VER}-public-src.tar.gz - -# Move source to 'src' directory -mv dakota-${VER}.0.src/* ${DAK_SRC} -rm -rf dakota-${VER}.0.src - -# Copy customized source and configuration files to 'src' directory -cp configs/${VER}/packages/DDACE/src/Analyzer/MainEffectsExcelOutput.cpp ${DAK_SRC}/packages/DDACE/src/Analyzer -cp configs/${VER}/packages/queso/src/misc/src/1DQuadrature.C ${DAK_SRC}/packages/queso/src/misc/src -cp configs/${VER}/packages/surfpack/src/surfaces/nkm/NKM_KrigingModel.cpp ${DAK_SRC}/packages/surfpack/src/surfaces/nkm -cp configs/${VER}/packages/VPISparseGrid/src/sandia_rules.cpp ${DAK_SRC}/packages/VPISparseGrid/src -cp configs/${VER}/src/DakotaInterface.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDLocalReliability.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDSampling.cpp ${DAK_SRC}/src - -# Copy customized source and configuration files specific to Linux to 'src' directory -cp configs/${VER}/linux/cmake/BuildDakotaCustom.cmake ${DAK_SRC}/cmake -cp configs/${VER}/linux/cmake/DakotaDev.cmake ${DAK_SRC}/cmake - -# Disable requirement of Python 2 for TriBITS -sed -i'' -e 's|SET(PythonInterp_FIND_VERSION|#SET(PythonInterp_FIND_VERSION|' ${DAK_SRC}/packages/teuchos/cmake/tribits/package_arch/TribitsFindPythonInterp.cmake - -# Configure -cd ${DAK_BUILD} -cmake \ - -DBUILD_SHARED_LIBS=OFF \ - -DBUILD_STATIC_LIBS=ON \ - -DCMAKE_C_COMPILER=${MPI_HOME}/bin/mpicc \ - -DCMAKE_C_FLAGS="-fPIC -Wno-error=implicit-function-declaration" \ - -DCMAKE_CXX_COMPILER=${MPI_HOME}/bin/mpicxx \ - -DCMAKE_CXX_FLAGS="-fPIC" \ - -DCMAKE_CXX_STANDARD="11" \ - -DCMAKE_Fortran_COMPILER=${MPI_HOME}/bin/mpif77 \ - -DBoost_NO_BOOST_CMAKE=TRUE \ - -DHAVE_ACRO=OFF \ - -DHAVE_JEGA=OFF \ - -DHAVE_QUESO=ON \ - -DDAKOTA_HAVE_GSL=ON \ - -C${DAK_SRC}/cmake/BuildDakotaCustom.cmake \ - -C${DAK_SRC}/cmake/DakotaDev.cmake \ - ${DAK_SRC} - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi - -cd ${DAK_INSTALL} - -# Comment out definition of HAVE_MPI in Teuchos config header file in order to -# avoid conflict with our definition -sed -i -e "s/#define HAVE_MPI/\/* #define HAVE_MPI *\//g" include/Teuchos_config.h Index: sm/trunk/externalpackages/dakota/install-6.2-linux.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-6.2-linux.sh (revision 28275) +++ (revision ) @@ -1,90 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="6.2" - -PREFIX="${ISSM_DIR}/externalpackages/dakota/install" # Set to location where external package should be installed - -# Find libgfortran so that we do not have to hardcode it. -# -# TODO: -# - Move this to etc/environment.sh -# -echo "Finding libgfortran..." -LIBGFORTRAN=$(find /usr -name libgfortran* 2>/dev/null | egrep -n libgfortran.a | sed "s/[0-9]*://g" | head -1) -LIBGFORTRAN_ROOT=${LIBGFORTRAN%/*} - -## Environment -# -export BLAS_LIBS="-L${BLAS_ROOT}/lib -lfblas -L${LIBGFORTRAN_ROOT} -lgfortran" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it -export DAK_BUILD=${ISSM_DIR}/externalpackages/dakota/build # DO NOT CHANGE THIS -export DAK_INSTALL=${PREFIX} # DO NOT CHANGE THIS -export DAK_SRC=${ISSM_DIR}/externalpackages/dakota/src # DO NOT CHANGE THIS -export LAPACK_LIBS="-L${LAPACK_ROOT}/lib -lflapack -L${LIBGFORTRAN_ROOT} -lgfortran" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it - -# Cleanup -rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} -mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} - -# Download source -${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz" - -# Unpack source -tar -zxvf dakota-${VER}-public-src.tar.gz - -# Move source to 'src' directory -mv dakota-${VER}.0.src/* ${DAK_SRC} -rm -rf dakota-${VER}.0.src - -# Copy customized source and configuration files to 'src' directory -cp configs/${VER}/packages/DDACE/src/Analyzer/MainEffectsExcelOutput.cpp ${DAK_SRC}/packages/DDACE/src/Analyzer -cp configs/${VER}/packages/queso/src/misc/src/1DQuadrature.C ${DAK_SRC}/packages/queso/src/misc/src -cp configs/${VER}/packages/surfpack/src/surfaces/nkm/NKM_KrigingModel.cpp ${DAK_SRC}/packages/surfpack/src/surfaces/nkm -cp configs/${VER}/packages/VPISparseGrid/src/sandia_rules.cpp ${DAK_SRC}/packages/VPISparseGrid/src -cp configs/${VER}/src/DakotaInterface.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDLocalReliability.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDSampling.cpp ${DAK_SRC}/src - -# Copy customized source and configuration files specific to Linux to 'src' directory -cp configs/${VER}/linux/cmake/BuildDakotaCustom.cmake ${DAK_SRC}/cmake -cp configs/${VER}/linux/cmake/DakotaDev.cmake ${DAK_SRC}/cmake - -# Disable requirement of Python 2 for TriBITS -sed -i'' -e 's|SET(PythonInterp_FIND_VERSION|#SET(PythonInterp_FIND_VERSION|' ${DAK_SRC}/packages/teuchos/cmake/tribits/package_arch/TribitsFindPythonInterp.cmake - -# Configure -cd ${DAK_BUILD} -cmake \ - -DBUILD_SHARED_LIBS=ON \ - -DBUILD_STATIC_LIBS=OFF \ - -DCMAKE_C_COMPILER=${MPI_HOME}/bin/mpicc \ - -DCMAKE_C_FLAGS="-Wno-error=implicit-function-declaration" \ - -DCMAKE_CXX_COMPILER=${MPI_HOME}/bin/mpicxx \ - -DCMAKE_CXX_STANDARD="11" \ - -DCMAKE_Fortran_COMPILER=${MPI_HOME}/bin/mpif77 \ - -DBoost_NO_BOOST_CMAKE=TRUE \ - -DHAVE_ACRO=OFF \ - -DHAVE_JEGA=OFF \ - -DHAVE_QUESO=ON \ - -DDAKOTA_HAVE_GSL=ON \ - -C${DAK_SRC}/cmake/BuildDakotaCustom.cmake \ - -C${DAK_SRC}/cmake/DakotaDev.cmake \ - ${DAK_SRC} - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi - -cd ${DAK_INSTALL} - -# Comment out definition of HAVE_MPI in Teuchos config header file in order to -# avoid conflict with our definition -sed -i -e "s/#define HAVE_MPI/\/* #define HAVE_MPI *\//g" include/Teuchos_config.h Index: sm/trunk/externalpackages/dakota/install-6.2-lonestar.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-6.2-lonestar.sh (revision 28275) +++ (revision ) @@ -1,63 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf build -rm -rf install -mkdir src build install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-6.2-public.src.tar.gz' 'dakota-6.2-public-src.tar.gz' - -#Untar -tar -zxvf dakota-6.2-public-src.tar.gz - -#Move Dakota to src directory -mv dakota-6.2.0.src/* src -rm -rf dakota-6.2.0.src - -#Set up Dakota cmake variables and config -export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src -export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build -export MPIHOME=/opt/cray/pe/mpt/7.7.3/gni/mpich-intel/16.0/ - -cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake -patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/6.2/BuildDakotaCustom.cmake.patch -patch $DAK_SRC/cmake/DakotaDev.cmake configs/6.2/DakotaDev.cmake.patch -patch $DAK_SRC/CMakeLists.txt configs/6.2/CMakeLists.txt.lonestar.patch - -#Apply patches -patch src/src/NonDSampling.cpp configs/6.2/NonDSampling.cpp.patch -patch src/src/NonDLocalReliability.cpp configs/6.2/NonDLocalReliability.cpp.patch -patch src/packages/pecos/src/pecos_global_defs.hpp configs/6.2/pecos_global_defs.hpp.patch -patch src/packages/surfpack/src/surfaces/nkm/NKM_KrigingModel.cpp configs/6.2/NKM_KrigingModel.patch -patch src/packages/DDACE/src/Analyzer/MainEffectsExcelOutput.cpp configs/6.2/MainEffectsExcelOutput.patch -patch src/src/DakotaInterface.cpp configs/6.2/DakotaInterface.patch - -#Configure dakota -cd $DAK_BUILD - -cmake -D CMAKE_C_COMPILER=mpicc \ - -D CMAKE_CXX_COMPILER=mpicxx \ - -D CMAKE_Fortran_COMPILER=mpif77 \ - -D MPIEXEC_EXECUTABLE=/opt/apps/tacc/bin/ibrun \ - -DHAVE_ACRO=off \ - -DHAVE_JEGA=off \ - -C $DAK_SRC/cmake/BuildDakotaCustom.cmake \ - -C $DAK_SRC/cmake/DakotaDev.cmake \ - $DAK_SRC -cd .. - -#Compile and install dakota -cd $DAK_BUILD -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: sm/trunk/externalpackages/dakota/install-6.2-mac-static.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-6.2-mac-static.sh (revision 28275) +++ (revision ) @@ -1,115 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="6.2" - -PREFIX="${ISSM_DIR}/externalpackages/dakota/install" # Set to location where external package should be installed - -# Find libgfortran and libgcc so we do not have to hardcode them -# -# TODO: -# - Move this to etc/environment.sh -# - Test if -static-libgfortran flag will avoid all of this. -# - Otherwise, refactor this to work with other gfortran installations. -# -echo "Finding libgfortran..." -LIBGFORTRAN=$(find /usr /opt -name libgfortran* 2>/dev/null | egrep -n libgfortran.a | egrep -v i386 | sed "s/[0-9]*://g" | head -1) -LIBGFORTRAN_ROOT=${LIBGFORTRAN%/*} -LIBGCC=$(find ${LIBGFORTRAN_ROOT} -name libgcc* 2>/dev/null | egrep -n libgcc.a | egrep -v i386 | sed "s/[0-9]*://g" | head -1) - -## Environment -# -export BLAS_LIBS="-L${BLAS_ROOT}/lib -lfblas ${LIBGFORTRAN_ROOT}/libgfortran.a ${LIBGFORTRAN_ROOT}/libquadmath.a ${LIBGCC}" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it -export DAK_BUILD=${ISSM_DIR}/externalpackages/dakota/build # DO NOT CHANGE THIS -export DAK_INSTALL=${PREFIX} # DO NOT CHANGE THIS -export DAK_SRC=${ISSM_DIR}/externalpackages/dakota/src # DO NOT CHANGE THIS -export LAPACK_LIBS="-L${LAPACK_ROOT}/lib -lflapack ${LIBGFORTRAN_ROOT}/libgfortran.a ${LIBGFORTRAN_ROOT}/libquadmath.a ${LIBGCC}" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it -export LDFLAGS="-framework CoreFoundation" - -# Cleanup -rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} -mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} - -# Download source -${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz" - -# Unpack source -tar -zxvf dakota-${VER}-public-src.tar.gz - -# Move source to 'src' directory -mv dakota-${VER}.0.src/* ${DAK_SRC} -rm -rf dakota-${VER}.0.src - -# Copy customized source and configuration files to 'src' directory -cp configs/${VER}/packages/DDACE/src/Analyzer/MainEffectsExcelOutput.cpp ${DAK_SRC}/packages/DDACE/src/Analyzer -cp configs/${VER}/packages/queso/src/misc/src/1DQuadrature.C ${DAK_SRC}/packages/queso/src/misc/src -cp configs/${VER}/packages/surfpack/src/surfaces/nkm/NKM_KrigingModel.cpp ${DAK_SRC}/packages/surfpack/src/surfaces/nkm -cp configs/${VER}/packages/VPISparseGrid/src/sandia_rules.cpp ${DAK_SRC}/packages/VPISparseGrid/src -cp configs/${VER}/src/DakotaInterface.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDLocalReliability.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDSampling.cpp ${DAK_SRC}/src - -# Copy customized source and configuration files specific to Mac to 'src' directory -cp configs/${VER}/mac/cmake/BuildDakotaCustom.cmake ${DAK_SRC}/cmake -cp configs/${VER}/mac/cmake/DakotaDev.cmake ${DAK_SRC}/cmake -cp configs/${VER}/mac/cmake/InstallDarwinDylibs.cmake ${DAK_SRC}/cmake - -# Uncomment to copy the following customized source files if using C99 or later -# standard. If uncommented, adding -Wno-error=implicit-function-declaration -# option to CFLAGS is not needed. -# cp configs/${VER}/mac/static/packages/DDACE/include/xtndispatch.h ${DAK_SRC}/packages/DDACE/include -# cp configs/${VER}/mac/static/packages/DDACE/src/Bose/Boselink.c ${DAK_SRC}/packages/DDACE/src/Bose -# cp configs/${VER}/mac/static/packages/DDACE/src/Bose/construct.c ${DAK_SRC}/packages/DDACE/src/Bose -# cp configs/${VER}/mac/static/packages/DDACE/src/Bose/galois.c ${DAK_SRC}/packages/DDACE/src/Bose -# cp configs/${VER}/mac/static/packages/DDACE/src/Bose/gfields.c ${DAK_SRC}/packages/DDACE/src/Bose -# cp configs/${VER}/mac/static/packages/DDACE/src/Bose/oa.c ${DAK_SRC}/packages/DDACE/src/Bose -# cp configs/${VER}/mac/static/packages/nidr/nidr.c ${DAK_SRC}/packages/nidr -# cp configs/${VER}/mac/static/packages/nidr/nidr-scanner.c ${DAK_SRC}/packages/nidr - -# Disable requirement of Python 2 for TriBITS -sed -i'' -e 's|SET(PythonInterp_FIND_VERSION|#SET(PythonInterp_FIND_VERSION|' ${DAK_SRC}/packages/teuchos/cmake/tribits/package_arch/TribitsFindPythonInterp.cmake - -# Configure -# -# NOTE: -# - The -w option has been added to CMAKE_C_FLAGS, CMAKE_CXX_FLAGS, and -# CMAKE_Fortran_FLAGS. This should be removed for more recent versions of -# Dakota. -# -cd ${DAK_BUILD} -cmake \ - -DBUILD_SHARED_LIBS=OFF \ - -DBUILD_STATIC_LIBS=ON \ - -DCMAKE_C_COMPILER=${MPI_HOME}/bin/mpicc \ - -DCMAKE_C_FLAGS="-fPIC -Wno-error=implicit-function-declaration -w" \ - -DCMAKE_CXX_COMPILER=${MPI_HOME}/bin/mpicxx \ - -DCMAKE_CXX_FLAGS="-fPIC -fdelayed-template-parsing -w" \ - -DCMAKE_CXX_STANDARD="11" \ - -DCMAKE_Fortran_COMPILER=${MPI_HOME}/bin/mpif77 \ - -DCMAKE_Fortran_FLAGS="-fPIC -fallow-argument-mismatch -w" \ - -DBoost_NO_BOOST_CMAKE=TRUE \ - -DHAVE_ACRO=OFF \ - -DHAVE_JEGA=OFF \ - -DHAVE_QUESO=ON \ - -DDAKOTA_HAVE_GSL=ON \ - -C${DAK_SRC}/cmake/BuildDakotaCustom.cmake \ - -C${DAK_SRC}/cmake/DakotaDev.cmake \ - ${DAK_SRC} - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi - -cd ${DAK_INSTALL} - -# Comment out definition of HAVE_MPI in Teuchos config header file in order to -# avoid conflict with our definition -sed -i -e "s/#define HAVE_MPI/\/* #define HAVE_MPI *\//g" include/Teuchos_config.h Index: sm/trunk/externalpackages/dakota/install-6.2-mac.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-6.2-mac.sh (revision 28275) +++ (revision ) @@ -1,141 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="6.2" - -PREFIX="${ISSM_DIR}/externalpackages/dakota/install" # Set to location where external package should be installed - -# Find libgfortran so that we do not have to hardcode it. -# -# TODO: -# - Move this to etc/environment.sh -# -echo "Finding libgfortran..." -LIBGFORTRAN=$(find /usr /opt -name libgfortran* 2>/dev/null | egrep -n libgfortran.a | egrep -v i386 | sed "s/[0-9]*://g" | head -1) -LIBGFORTRAN_ROOT=${LIBGFORTRAN%/*} - -## Environment -# -export BLAS_LIBS="-L${BLAS_ROOT}/lib -lfblas -L${LIBGFORTRAN_ROOT} -lgfortran" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it -export DAK_BUILD=${ISSM_DIR}/externalpackages/dakota/build # DO NOT CHANGE THIS -export DAK_INSTALL=${PREFIX} # DO NOT CHANGE THIS -export DAK_SRC=${ISSM_DIR}/externalpackages/dakota/src # DO NOT CHANGE THIS -export LAPACK_LIBS="-L${LAPACK_ROOT}/lib -lflapack -L${LIBGFORTRAN_ROOT} -lgfortran" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it -export LDFLAGS="-framework CoreFoundation" - -# Cleanup -rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} -mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} - -# Download source -${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz" - -# Unpack source -tar -zxvf dakota-${VER}-public-src.tar.gz - -# Move source to 'src' directory -mv dakota-${VER}.0.src/* ${DAK_SRC} -rm -rf dakota-${VER}.0.src - -# Copy customized source and configuration files to 'src' directory -cp configs/${VER}/packages/DDACE/src/Analyzer/MainEffectsExcelOutput.cpp ${DAK_SRC}/packages/DDACE/src/Analyzer -cp configs/${VER}/packages/queso/src/misc/src/1DQuadrature.C ${DAK_SRC}/packages/queso/src/misc/src -cp configs/${VER}/packages/surfpack/src/surfaces/nkm/NKM_KrigingModel.cpp ${DAK_SRC}/packages/surfpack/src/surfaces/nkm -cp configs/${VER}/packages/VPISparseGrid/src/sandia_rules.cpp ${DAK_SRC}/packages/VPISparseGrid/src -cp configs/${VER}/src/DakotaInterface.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDLocalReliability.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDSampling.cpp ${DAK_SRC}/src - -# Copy customized source and configuration files specific to Mac to 'src' directory -cp configs/${VER}/mac/cmake/BuildDakotaCustom.cmake ${DAK_SRC}/cmake -cp configs/${VER}/mac/cmake/DakotaDev.cmake ${DAK_SRC}/cmake -cp configs/${VER}/mac/cmake/InstallDarwinDylibs.cmake ${DAK_SRC}/cmake - -# Disable requirement of Python 2 for TriBITS -sed -i'' -e 's|SET(PythonInterp_FIND_VERSION|#SET(PythonInterp_FIND_VERSION|' ${DAK_SRC}/packages/teuchos/cmake/tribits/package_arch/TribitsFindPythonInterp.cmake - -echo "Debug:" -echo "GSL_HOME : ${GSL_HOME}" -echo "CPATH : ${CPATH}" - -# Configure -# -# NOTE: -# - The -w option has been added to CMAKE_C_FLAGS, CMAKE_CXX_FLAGS, and -# CMAKE_Fortran_FLAGS. This should be removed for more recent versions of -# Dakota. -# -cd ${DAK_BUILD} -cmake \ - -DBUILD_SHARED_LIBS=ON \ - -DBUILD_STATIC_LIBS=OFF \ - -DCMAKE_C_COMPILER=${MPI_HOME}/bin/mpicc \ - -DCMAKE_C_FLAGS="-w" \ - -DCMAKE_CXX_COMPILER=${MPI_HOME}/bin/mpicxx \ - -DCMAKE_CXX_FLAGS="-fdelayed-template-parsing -w" \ - -DCMAKE_CXX_STANDARD="11" \ - -DCMAKE_Fortran_COMPILER=${MPI_HOME}/bin/mpif77 \ - -DBoost_NO_BOOST_CMAKE=TRUE \ - -DHAVE_ACRO=OFF \ - -DHAVE_JEGA=OFF \ - -DHAVE_QUESO=ON \ - -DDAKOTA_HAVE_GSL=ON \ - -C${DAK_SRC}/cmake/BuildDakotaCustom.cmake \ - -C${DAK_SRC}/cmake/DakotaDev.cmake \ - ${DAK_SRC} - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi - -cd ${DAK_INSTALL} - -# Comment out definition of HAVE_MPI in Teuchos config header file in order to -# avoid conflict with our definition -sed -i -e "s/#define HAVE_MPI/\/* #define HAVE_MPI *\//g" include/Teuchos_config.h - -# Set install_name for all shared libraries -cd ${DAK_INSTALL}/lib -for name in *.dylib; do - install_name_tool -id ${DAK_INSTALL}/lib/${name} ${name} -done - -## Patch install names for certain libraries -# -# TODO: Figure out how to reconfigure source to apply these install names at -# compile time -# -install_name_tool -change libdakota_src_fortran.dylib ${DAK_INSTALL}/lib/libdakota_src_fortran.dylib libdakota_src.dylib -install_name_tool -change liblhs_mod.dylib ${DAK_INSTALL}/lib/liblhs_mod.dylib liblhs.dylib -install_name_tool -change liblhs_mods.dylib ${DAK_INSTALL}/lib/liblhs_mods.dylib liblhs.dylib -install_name_tool -change liblhs_mod.dylib ${DAK_INSTALL}/lib/liblhs_mod.dylib liblhs_mods.dylib -install_name_tool -change libteuchos.dylib ${DAK_INSTALL}/lib/libteuchos.dylib liboptpp.dylib -install_name_tool -change libdfftpack.dylib ${DAK_INSTALL}/lib/libdfftpack.dylib libpecos.dylib -install_name_tool -change liblhs.dylib ${DAK_INSTALL}/lib/liblhs.dylib libpecos.dylib -install_name_tool -change liblhs_mod.dylib ${DAK_INSTALL}/lib/liblhs_mod.dylib libpecos.dylib -install_name_tool -change liblhs_mods.dylib ${DAK_INSTALL}/lib/liblhs_mods.dylib libpecos.dylib -install_name_tool -change libpecos_src.dylib ${DAK_INSTALL}/lib/libpecos_src.dylib libpecos.dylib -install_name_tool -change libteuchos.dylib ${DAK_INSTALL}/lib/libteuchos.dylib libpecos.dylib -install_name_tool -change libdfftpack.dylib ${DAK_INSTALL}/lib/libdfftpack.dylib libpecos_src.dylib -install_name_tool -change liblhs.dylib ${DAK_INSTALL}/lib/liblhs.dylib libpecos_src.dylib -install_name_tool -change liblhs_mod.dylib ${DAK_INSTALL}/lib/liblhs_mod.dylib libpecos_src.dylib -install_name_tool -change liblhs_mods.dylib ${DAK_INSTALL}/lib/liblhs_mods.dylib libpecos_src.dylib -install_name_tool -change libteuchos.dylib ${DAK_INSTALL}/lib/libteuchos.dylib libpecos_src.dylib -install_name_tool -change libsurfpack_fortran.dylib ${DAK_INSTALL}/lib/libsurfpack_fortran.dylib libsurfpack.dylib - -## Add LIBGFORTRAN_ROOT to rpath for libraries that need it -# -# TODO: Figure out how to reconfigure source to add to rpath at compile time -# -install_name_tool -add_rpath ${LIBGFORTRAN_ROOT} libpecos.dylib -install_name_tool -add_rpath ${LIBGFORTRAN_ROOT} libteuchos.dylib -install_name_tool -add_rpath ${LIBGFORTRAN_ROOT} liboptpp.dylib - Index: sm/trunk/externalpackages/dakota/install-6.2-pleiades.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-6.2-pleiades.sh (revision 28275) +++ (revision ) @@ -1,78 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="6.2" - -PREFIX="${ISSM_DIR}/externalpackages/dakota/install" # Set to location where external package should be installed - -## Environment -# -export BLAS_LIBS="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/ -lmkl_intel_lp64 -lmkl_sequential -lmkl_core" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it; should upate to /nasa/intel/Compiler/2021.4.0/mkl/2021.4.0/lib/intel64 -export CXXFLAGS='-std=c++11' -export DAK_BUILD=${ISSM_DIR}/externalpackages/dakota/build # DO NOT CHANGE THIS -export DAK_INSTALL=${PREFIX} # DO NOT CHANGE THIS -export DAK_SRC=${ISSM_DIR}/externalpackages/dakota/src # DO NOT CHANGE THIS -export LAPACK_LIBS="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/lib/intel64/ -lmkl_intel_lp64 -lmkl_sequential -lmkl_core" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it; should upate to /nasa/intel/Compiler/2021.4.0/mkl/2021.4.0/lib/intel64 - -# Cleanup -rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} -mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} - -# Download source -${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz" - -# Unpack source -tar -zxvf dakota-${VER}-public-src.tar.gz - -# Move source to 'src' directory -mv dakota-${VER}.0.src/* ${DAK_SRC} -rm -rf dakota-${VER}.0.src - -# Copy customized source and configuration files to 'src' directory -cp configs/${VER}/packages/DDACE/src/Analyzer/MainEffectsExcelOutput.cpp ${DAK_SRC}/packages/DDACE/src/Analyzer -cp configs/${VER}/packages/queso/src/misc/src/1DQuadrature.C ${DAK_SRC}/packages/queso/src/misc/src -cp configs/${VER}/packages/surfpack/src/surfaces/nkm/NKM_KrigingModel.cpp ${DAK_SRC}/packages/surfpack/src/surfaces/nkm -cp configs/${VER}/packages/VPISparseGrid/src/sandia_rules.cpp ${DAK_SRC}/packages/VPISparseGrid/src -cp configs/${VER}/src/DakotaInterface.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDLocalReliability.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDSampling.cpp ${DAK_SRC}/src - -# Copy customized source and configuration files specific to Linux to 'src' directory -cp configs/${VER}/linux/cmake/BuildDakotaCustom.pleiades.cmake ${DAK_SRC}/cmake/BuildDakotaCustom.cmake -cp configs/${VER}/linux/cmake/DakotaDev.cmake ${DAK_SRC}/cmake - -# Configure -cd ${DAK_BUILD} -cmake \ - -DBUILD_SHARED_LIBS=ON \ - -DBUILD_STATIC_LIBS=OFF \ - -DCMAKE_C_COMPILER=mpicc \ - -DCMAKE_C_FLAGS="-Wno-error=implicit-function-declaration" \ - -DCMAKE_CXX_COMPILER=mpicxx \ - -DCMAKE_Fortran_COMPILER=/usr/bin/gfortran \ - -DBoost_NO_BOOST_CMAKE=TRUE \ - -DHAVE_ACRO=OFF \ - -DHAVE_JEGA=OFF \ - -DHAVE_QUESO=ON \ - -DDAKOTA_HAVE_GSL=ON \ - -C${DAK_SRC}/cmake/BuildDakotaCustom.cmake \ - -C${DAK_SRC}/cmake/DakotaDev.cmake \ - ${DAK_SRC} - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi - -cd ${DAK_INSTALL} - -# Comment out definition of HAVE_MPI in Teuchos config header file in order to -# avoid conflict with our definition -sed -i -e "s/#define HAVE_MPI/\/* #define HAVE_MPI *\//g" include/Teuchos_config.h Index: sm/trunk/externalpackages/dakota/install-6.2-pleiades_toss4.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-6.2-pleiades_toss4.sh (revision 28275) +++ (revision ) @@ -1,78 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="6.2" - -PREFIX="${ISSM_DIR}/externalpackages/dakota/install" # Set to location where external package should be installed - -## Environment -# -export BLAS_LIBS="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/ -lmkl_intel_lp64 -lmkl_sequential -lmkl_core" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it; should upate to /nasa/intel/Compiler/2021.4.0/mkl/2021.4.0/lib/intel64 -export CXXFLAGS='-std=c++98' -export DAK_BUILD=${ISSM_DIR}/externalpackages/dakota/build # DO NOT CHANGE THIS -export DAK_INSTALL=${PREFIX} # DO NOT CHANGE THIS -export DAK_SRC=${ISSM_DIR}/externalpackages/dakota/src # DO NOT CHANGE THIS -export LAPACK_LIBS="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/lib/intel64/ -lmkl_intel_lp64 -lmkl_sequential -lmkl_core" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it; should upate to /nasa/intel/Compiler/2021.4.0/mkl/2021.4.0/lib/intel64 - -# Cleanup -rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} -mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC} - -# Download source -${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz" - -# Unpack source -tar -zxvf dakota-${VER}-public-src.tar.gz - -# Move source to 'src' directory -mv dakota-${VER}.0.src/* ${DAK_SRC} -rm -rf dakota-${VER}.0.src - -# Copy customized source and configuration files to 'src' directory -cp configs/${VER}/packages/DDACE/src/Analyzer/MainEffectsExcelOutput.cpp ${DAK_SRC}/packages/DDACE/src/Analyzer -cp configs/${VER}/packages/queso/src/misc/src/1DQuadrature.C ${DAK_SRC}/packages/queso/src/misc/src -cp configs/${VER}/packages/surfpack/src/surfaces/nkm/NKM_KrigingModel.cpp ${DAK_SRC}/packages/surfpack/src/surfaces/nkm -cp configs/${VER}/packages/VPISparseGrid/src/sandia_rules.cpp ${DAK_SRC}/packages/VPISparseGrid/src -cp configs/${VER}/src/DakotaInterface.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDLocalReliability.cpp ${DAK_SRC}/src -cp configs/${VER}/src/NonDSampling.cpp ${DAK_SRC}/src - -# Copy customized source and configuration files specific to Linux to 'src' directory -cp configs/${VER}/linux/cmake/BuildDakotaCustom.pleiades.cmake ${DAK_SRC}/cmake/BuildDakotaCustom.cmake -cp configs/${VER}/linux/cmake/DakotaDev.cmake ${DAK_SRC}/cmake - -# Configure -cd ${DAK_BUILD} -cmake \ - -DBUILD_SHARED_LIBS=ON \ - -DBUILD_STATIC_LIBS=OFF \ - -DCMAKE_C_COMPILER=mpicc \ - -DCMAKE_C_FLAGS="-Wno-error=implicit-function-declaration" \ - -DCMAKE_CXX_COMPILER=mpicxx \ - -DCMAKE_Fortran_COMPILER=gfortran \ - -DBoost_NO_BOOST_CMAKE=TRUE \ - -DHAVE_ACRO=OFF \ - -DHAVE_JEGA=OFF \ - -DHAVE_QUESO=ON \ - -DDAKOTA_HAVE_GSL=ON \ - -C${DAK_SRC}/cmake/BuildDakotaCustom.cmake \ - -C${DAK_SRC}/cmake/DakotaDev.cmake \ - ${DAK_SRC} - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi - -cd ${DAK_INSTALL} - -# Comment out definition of HAVE_MPI in Teuchos config header file in order to -# avoid conflict with our definition -sed -i -e "s/#define HAVE_MPI/\/* #define HAVE_MPI *\//g" include/Teuchos_config.h Index: sm/trunk/externalpackages/dakota/install-6.2-stallo.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install-6.2-stallo.sh (revision 28275) +++ (revision ) @@ -1,63 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf build -rm -rf install -mkdir src build install - -#Download from ISSM server -#$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-6.2-public.src.tar.gz' 'dakota-6.2-public-src.tar.gz' - -#Untar -tar -zxvf dakota-6.2-public-src.tar.gz - -#Move Dakota to src directory -mv dakota-6.2.0.src/* src -rm -rf dakota-6.2.0.src - -#Set up Dakota cmake variables and config -#export PATH="/usr/bin":$PATH -export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src -export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build -export MPIHOME=/global/hds/software/cpu/eb3/impi/5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25/ - -cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake -patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/6.2/BuildDakotaCustom.cmake.stallo.patch -patch $DAK_SRC/cmake/DakotaDev.cmake configs/6.2/DakotaDev.cmake.patch -patch $DAK_SRC/CMakeLists.txt configs/6.2/CMakeLists.txt.stallo.patch - -#Apply patches -patch src/src/NonDSampling.cpp configs/6.2/NonDSampling.cpp.patch -patch src/src/NonDLocalReliability.cpp configs/6.2/NonDLocalReliability.cpp.patch -patch src/packages/pecos/src/pecos_global_defs.hpp configs/6.2/pecos_global_defs.hpp.patch -patch src/packages/surfpack/src/surfaces/nkm/NKM_KrigingModel.cpp configs/6.2/NKM_KrigingModel.patch -patch src/packages/DDACE/src/Analyzer/MainEffectsExcelOutput.cpp configs/6.2/MainEffectsExcelOutput.patch -patch src/src/DakotaInterface.cpp configs/6.2/DakotaInterface.patch - -#Configure dakota -cd $DAK_BUILD - -cmake -D CMAKE_C_COMPILER=/global/hds/software/cpu/eb3/impi/5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25/bin64/mpicc \ - -D CMAKE_CXX_COMPILER=/global/hds/software/cpu/eb3/impi/5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25/bin64/mpicxx \ - -D CMAKE_Fortran_COMPILER=gfortran \ - -DHAVE_ACRO=off \ - -DHAVE_JEGA=off \ - -C $DAK_SRC/cmake/BuildDakotaCustom.cmake \ - -C $DAK_SRC/cmake/DakotaDev.cmake \ - $DAK_SRC -cd .. - -#Compile and install dakota -cd $DAK_BUILD -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. Index: /issm/trunk/externalpackages/dakota/install.sh =================================================================== --- /issm/trunk/externalpackages/dakota/install.sh (revision 1) +++ /issm/trunk/externalpackages/dakota/install.sh (revision 1) @@ -0,0 +1,32 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#Some cleanup +rm -rf Dakota +rm -rf src +rm -rf install + +#Create src and install directories +mkdir src install + +#version of doxygen +version=`echo *.src.tar.gz | sed 's/\.src\.tar\.gz//g' | sed 's/Dakota_//g'` + +#Untar +tar -zxvf Dakota_$version.src.tar.gz + +#Move Dakota to src directory +mv Dakota/* src +rm -rf Dakota + +#Configure dakota +cd src +./configure --prefix="$ISSM_DIR/packages/dakota/install" --without-graphics --with-matlab=$MATLAB_DIR + +#Compile dakota +make -j $NUMCPUS + +#Install dakota +make install Index: /issm/trunk/externalpackages/doxygen/install.sh =================================================================== --- /issm/trunk/externalpackages/doxygen/install.sh (revision 28275) +++ /issm/trunk/externalpackages/doxygen/install.sh (revision 1) @@ -1,22 +1,32 @@ #!/bin/bash -set -eu + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of doxygen +version=`echo *.src.tar.gz | sed 's/\.src\.tar\.gz//g' | sed 's/doxygen-//g'` #Some cleanup -rm -rf install src -mkdir install +rm -rf src +rm -rf install +rm -rf doxygen-$version -#Download latest version -git clone https://github.com/doxygen/doxygen.git install +#Create src and install directories +mkdir src install + +#Untar +tar -zxvf doxygen-$version.src.tar.gz + +#Move doxygen into src directory +mv doxygen-$version/* src +rm -rf doxygen-$version #Configure doxygen -cd install -mkdir build -cd build -cmake -G "Unix Makefiles" -DCMAKE_INSTALL_PREFIX="$ISSM_DIR/externalpackages/doxygen/install" .. -if [ $# -eq 0 ]; then - make -else - make -j $1 -fi +cd src && ./configure --prefix "$ISSM_DIR/packages/doxygen/install" -make install +#Compile doxygen +make -j $NUMCPUS + +#Install doxygen +make install +make install_docs Index: /issm/trunk/externalpackages/gdal/GDALmake.opt.patch =================================================================== --- /issm/trunk/externalpackages/gdal/GDALmake.opt.patch (revision 1) +++ /issm/trunk/externalpackages/gdal/GDALmake.opt.patch (revision 1) @@ -0,0 +1,5 @@ +225,226c225 +< #CURL_LIB = -L/usr/kerberos/lib64 -lcurl -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lresolv -ldl -lidn -lssl -lcrypto -lz +< CURL_LIB = -L/usr/lib64 -lcurl /usr/lib64/libgssapi_krb5.so.2 /usr/lib64/libkrb5.so.3 /usr/lib64/libk5crypto.so.3 /usr/lib64/libssl3.so -lresolv -ldl -lidn -lz +--- +> CURL_LIB = -L/usr/kerberos/lib64 -lcurl -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lresolv -ldl -lidn -lssl -lcrypto -lz Index: sm/trunk/externalpackages/gdal/install-3-python-static.sh =================================================================== --- /issm/trunk/externalpackages/gdal/install-3-python-static.sh (revision 28275) +++ (revision ) @@ -1,63 +1,0 @@ -#!/bin/bash -set -eu - - -## TODO -# - May want to supply path to Python instead of, effectively, using result of `which python` -# - -## Constants -# -VER="3.5.3" - -## Environment -# -export CC=mpicc -export CXXFLAGS="-std=c++11" -export CXX=mpicxx -export LIBS="-lsqlite3 -lhdf5_hl -lhdf5" -export PREFIX="${ISSM_DIR}/externalpackages/gdal/install" # Need this to properly set destination root for Python libraries on macOS (should not affect Linux build; do not need for this configuration, but including it for consistency) - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/gdal-${VER}.tar.gz" "gdal-${VER}.tar.gz" - -# Unpack source -tar -zxvf gdal-${VER}.tar.gz - -# Move source into 'src' directory -mv gdal-${VER}/* src -rm -rf gdal-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --enable-fast-install \ - --disable-shared \ - --without-ld-shared \ - --enable-static \ - --with-pic \ - --with-python="python3" \ - --with-curl="${CURL_ROOT}/bin/curl-config" \ - --with-hdf5="${HDF5_ROOT}" \ - --with-jpeg=internal \ - --with-libz="${ZLIB_ROOT}" \ - --with-netcdf="${NETCDF_ROOT}" \ - --with-pcre=no \ - --with-pg=no \ - --with-png=internal \ - --with-proj="${PROJ_ROOT}" \ - --with-zstd=no - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi Index: sm/trunk/externalpackages/gdal/install-3-python.sh =================================================================== --- /issm/trunk/externalpackages/gdal/install-3-python.sh (revision 28275) +++ (revision ) @@ -1,50 +1,0 @@ -#!/bin/bash -set -eu - - -## TODO -# - May want to supply path to Python instead of, effectively, using result of `which python` -# - -## Constants -# -VER="3.5.3" - -## Environment -# -export PREFIX="${ISSM_DIR}/externalpackages/gdal/install" # NOTE: Need to export this to properly set destination root for Python libraries on macOS (should not affect Linux build). Set to location where external package should be installed. - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/gdal-${VER}.tar.gz" "gdal-${VER}.tar.gz" - -# Unpack source -tar -zxvf gdal-${VER}.tar.gz - -# Move source into 'src' directory -mv gdal-${VER}/* src -rm -rf gdal-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --enable-fast-install \ - --with-python="python3" \ - --with-curl="${CURL_ROOT}/bin/curl-config" \ - --with-hdf5="${HDF5_ROOT}" \ - --with-libz="${ZLIB_ROOT}" \ - --with-netcdf="${NETCDF_ROOT}" \ - --with-proj="${PROJ_ROOT}" - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi Index: sm/trunk/externalpackages/gdal/install-3-static.sh =================================================================== --- /issm/trunk/externalpackages/gdal/install-3-static.sh (revision 28275) +++ (revision ) @@ -1,62 +1,0 @@ -#!/bin/bash -set -eu - - -## TODO -# - May want to supply path to Python instead of, effectively, using result of `which python` -# - -## Constants -# -VER="3.5.3" - -## Environment -# -export CC=mpicc -export CXXFLAGS="-std=c++11" -export CXX=mpicxx -export LIBS="-lsqlite3 -lhdf5_hl -lhdf5" -export PREFIX="${ISSM_DIR}/externalpackages/gdal/install" # NOTE: Need to export this to properly set destination root for Python libraries on macOS (should not affect Linux build). Set to location where external package should be installed. - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/gdal-${VER}.tar.gz" "gdal-${VER}.tar.gz" - -# Unpack source -tar -zxvf gdal-${VER}.tar.gz - -# Move source into 'src' directory -mv gdal-${VER}/* src -rm -rf gdal-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --enable-fast-install \ - --disable-shared \ - --without-ld-shared \ - --enable-static \ - --with-pic \ - --with-curl="${CURL_ROOT}/bin/curl-config" \ - --with-hdf5="${HDF5_ROOT}" \ - --with-jpeg=internal \ - --with-libz="${ZLIB_ROOT}" \ - --with-netcdf="${NETCDF_ROOT}" \ - --with-pcre=no \ - --with-pg=no \ - --with-png=internal \ - --with-proj="${PROJ_ROOT}" \ - --with-zstd=no - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi Index: sm/trunk/externalpackages/gdal/install-3.sh =================================================================== --- /issm/trunk/externalpackages/gdal/install-3.sh (revision 28275) +++ (revision ) @@ -1,43 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.5.3" - -## Environment -# -export PREFIX="${ISSM_DIR}/externalpackages/gdal/install" # NOTE: Need to export this to properly set destination root for Python libraries on macOS (should not affect Linux build). Set to location where external package should be installed. - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/gdal-${VER}.tar.gz" "gdal-${VER}.tar.gz" - -# Unpack source -tar -zxvf gdal-${VER}.tar.gz - -# Move source into 'src' directory -mv gdal-${VER}/* src -rm -rf gdal-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --enable-fast-install \ - --with-libz="${ZLIB_ROOT}" \ - --with-netcdf="${NETCDF_ROOT}" \ - --with-proj="${PROJ_ROOT}" - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi Index: /issm/trunk/externalpackages/gdal/install.sh =================================================================== --- /issm/trunk/externalpackages/gdal/install.sh (revision 1) +++ /issm/trunk/externalpackages/gdal/install.sh (revision 1) @@ -0,0 +1,35 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of gdal +version=`echo *.tar.gz | sed 's/\.tar\.gz//g' | sed 's/gdal-//g'` + +#Some cleanup +rm -rf src +rm -rf install +rm -rf gdal-$version + +#Create src and install directories +mkdir src install + +#Untar +tar -zxvf gdal-$version.tar.gz + +#Move gdal into src directory +mv gdal-$version/* src +rm -rf gdal-$version + +#Configure gdal +cd src +./configure --prefix="$ISSM_DIR/packages/gdal/install" --without-python --with-netcdf=no --with-jasper=no --without-ld-shared --with-unix-stdio-64=no + +#Patch GDALmake.opt +patch -R GDALmake.opt ../GDALmake.opt.patch + +#Compile gdal +make -j $NUMCPUS + +#Install gdal +make install Index: /issm/trunk/externalpackages/list =================================================================== --- /issm/trunk/externalpackages/list (revision 1) +++ /issm/trunk/externalpackages/list (revision 1) @@ -0,0 +1,1 @@ +dakota, doxygen, gdal, m2html, metis, mpich2, mtoc, netcdf, petsc, qhull, slepc, sowing, suitesparse, triangle Index: /issm/trunk/externalpackages/m2html/install.sh =================================================================== --- /issm/trunk/externalpackages/m2html/install.sh (revision 28275) +++ /issm/trunk/externalpackages/m2html/install.sh (revision 1) @@ -1,21 +1,25 @@ #!/bin/bash -set -eu + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#m2html name +name=`echo *.zip | sed 's/\.zip//g'` #Some cleanup -rm -rf install m2html +rm -rf install $name + +#Create src and install directories mkdir install -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/m2html.zip' 'm2html.zip' +#uncompress +unzip $name.zip -#uncompress -unzip m2html.zip +#patch m2html (ignore CVS and SVN directories) +cat $name/m2html.m | sed -e "s/'.' '..'/'.' '..' 'CVS' '.svn'/g" > $name/m2html2.m +mv $name/m2html2.m $name/m2html.m #move to install directory -mv m2html/* install -rm -rf m2html +mv $name/* install +rm -rf $name -#patch m2html -cd install -patch m2html.m ../m2html.m.patch -cd .. Index: sm/trunk/externalpackages/m2html/m2html.m.patch =================================================================== --- /issm/trunk/externalpackages/m2html/m2html.m.patch (revision 28275) +++ (revision ) @@ -1,114 +1,0 @@ -*** m2html.m 2011-08-12 10:57:45.000000000 -0700 ---- install/m2html.m 2011-08-12 10:58:26.000000000 -0700 -*************** -*** 306,311 **** ---- 306,325 ---- - end - - mdir = unique(mdirs); -+ -+ %add root directories -+ for i=1:length(mdir) -+ path=strsplit(mdir{i},'/'); -+ string=path{1}; -+ mdir{end+1}=string; -+ for j=2:length(path), -+ string=[string '/' path{j}]; -+ mdir{end+1}=string; -+ end -+ end -+ -+ mdir=unique(mdir); -+ - if options.verbose, - fprintf('Found %d unique Matlab directories.\n',length(mdir)); - end -*************** -*** 423,429 **** - %- Set some template variables - tpl = set(tpl,'var','DATE',[datestr(now,8) ' ' datestr(now,1) ' ' ... - datestr(now,13)]); -! tpl = set(tpl,'var','MASTERPATH', './'); - tpl = set(tpl,'var','DIRS', sprintf('%s ',mdir{:})); - - %- Print list of unique directories ---- 437,443 ---- - %- Set some template variables - tpl = set(tpl,'var','DATE',[datestr(now,8) ' ' datestr(now,1) ' ' ... - datestr(now,13)]); -! tpl = set(tpl,'var','MASTERPATH', ''); - tpl = set(tpl,'var','DIRS', sprintf('%s ',mdir{:})); - - %- Print list of unique directories -*************** -*** 555,561 **** - tpl = set(tpl,'var','subfold',''); - d = dir(mdir{i}); - d = {d([d.isdir]).name}; -! d = {d{~ismember(d,{'.' '..'})}}; - for j=1:length(d) - if ismember(fullfile(mdir{i},d{j}),mdir) - tpl = set(tpl,'var','SUBDIRECTORY',... ---- 569,575 ---- - tpl = set(tpl,'var','subfold',''); - d = dir(mdir{i}); - d = {d([d.isdir]).name}; -! d = {d{~ismember(d,{'.' '..' 'CVS' '.svn'})}}; - for j=1:length(d) - if ismember(fullfile(mdir{i},d{j}),mdir) - tpl = set(tpl,'var','SUBDIRECTORY',... -*************** -*** 687,695 **** - % Path should look like: ...;C:\WINNT\System32;...;C:\GraphViz\bin - % (Note that this should have been done automatically during GraphViz installation) - -! eval(['!' dot_exec ' -Tcmap -Tpng ' mdotfile ... - ' -o ' fullfile(options.htmlDir,mdir{i},[dotbase '.map']) ... -! ' -o ' fullfile(options.htmlDir,mdir{i},[dotbase '.png'])]) - % use '!' rather than 'system' for backward compability - catch - fprintf('failed.'); ---- 701,709 ---- - % Path should look like: ...;C:\WINNT\System32;...;C:\GraphViz\bin - % (Note that this should have been done automatically during GraphViz installation) - -! eval(['!' dot_exec ' -Tcmap -Tgif ' mdotfile ... - ' -o ' fullfile(options.htmlDir,mdir{i},[dotbase '.map']) ... -! ' -o ' fullfile(options.htmlDir,mdir{i},[dotbase '.gif'])]) - % use '!' rather than 'system' for backward compability - catch - fprintf('failed.'); -*************** -*** 700,706 **** - tpl = set(tpl,'var','INDEX',[options.indexFile options.extension]); - tpl = set(tpl,'var','MASTERPATH', backtomaster(mdir{i})); - tpl = set(tpl,'var','MDIR', mdir{i}); -! tpl = set(tpl,'var','GRAPH_IMG', [dotbase '.png']); - fmap = openfile(fullfile(options.htmlDir,mdir{i},[dotbase '.map']),'r'); - tpl = set(tpl,'var','GRAPH_MAP', fscanf(fmap,'%c')); - fclose(fmap); ---- 714,720 ---- - tpl = set(tpl,'var','INDEX',[options.indexFile options.extension]); - tpl = set(tpl,'var','MASTERPATH', backtomaster(mdir{i})); - tpl = set(tpl,'var','MDIR', mdir{i}); -! tpl = set(tpl,'var','GRAPH_IMG', [dotbase '.gif']); - fmap = openfile(fullfile(options.htmlDir,mdir{i},[dotbase '.map']),'r'); - tpl = set(tpl,'var','GRAPH_MAP', fscanf(fmap,'%c')); - fclose(fmap); -*************** -*** 1032,1038 **** - if recursive - d = dir(mdirs{i}); - d = {d([d.isdir]).name}; -! d = {d{~ismember(d,{'.' '..'})}}; - for j=1:length(d) - mfiles = getmfiles(cellstr(fullfile(mdirs{i},d{j})),... - mfiles,recursive); ---- 1046,1052 ---- - if recursive - d = dir(mdirs{i}); - d = {d([d.isdir]).name}; -! d = {d{~ismember(d,{'.' '..' 'CVS' '.svn'})}}; - for j=1:length(d) - mfiles = getmfiles(cellstr(fullfile(mdirs{i},d{j})),... - mfiles,recursive); Index: /issm/trunk/externalpackages/merge/mergesort.c =================================================================== --- /issm/trunk/externalpackages/merge/mergesort.c (revision 1) +++ /issm/trunk/externalpackages/merge/mergesort.c (revision 1) @@ -0,0 +1,196 @@ +/****************************************************************************** +* FILE: mergesort.c +* DESCRIPTION: +* The master task distributes an array to the workers in chunks, zero pads for equal load balancing +* The workers sort and return to the master, which does a final merge +******************************************************************************/ + +#include +#include +#include +#include + + + +#define N 100000 +#define MASTER 0 /* taskid of first task */ + +void showVector(int *v, int n, int id); +int * merge(int *A, int asize, int *B, int bsize); +void swap(int *v, int i, int j); +void m_sort(int *A, int min, int max); + +double startT, stopT; + +double startTime; + +/*function to print a vector*/ +void showVector(int *v, int n, int id) +{ + int i; + printf("%d: ",id); + for(i=0;i= asize) /*if A is shorter*/ + for (i = ci; i < csize; i++, bi++) + C[i] = B[bi]; + else if (bi >= bsize) /*if B is shorter*/ + for (i = ci; i < csize; i++, ai++) + C[i] = A[ai]; + + for (i = 0; i < asize; i++) + A[i] = C[i]; + for (i = 0; i < bsize; i++) + B[i] = C[asize+i]; + + /* showVector(C, csize, 0); */ + return C; +} + +void swap(int *v, int i, int j) +{ + int t; + t = v[i]; + v[i] = v[j]; + v[j] = t; +} + +void m_sort(int *A, int min, int max) +{ + int *C; /* dummy, just to fit the function */ + int mid = (min+max)/2; + int lowerCount = mid - min + 1; + int upperCount = max - mid; + + /* If the range consists of a single element, it's already sorted */ + if (max == min) { + return; + } else { + /* Otherwise, sort the first half */ + m_sort(A, min, mid); + /* Now sort the second half */ + m_sort(A, mid+1, max); + /* Now merge the two halves */ + C = merge(A + min, lowerCount, A + mid + 1, upperCount); + } +} + +main(int argc, char **argv) +{ + int * data; + int * chunk; + int * other; + int m,n=N; + int id,p; + int s = 0; + int i; + int step; + MPI_Status status; + + MPI_Init(&argc,&argv); + MPI_Comm_rank(MPI_COMM_WORLD,&id); + MPI_Comm_size(MPI_COMM_WORLD,&p); + + startT = MPI_Wtime(); + +/**************************** master task ************************************/ + if(id == MASTER) + { + int r; + srandom(MPI_Wtime()); + s = n/p; + r = n%p; + data = (int *)malloc((n+s-r)*sizeof(int)); + for(i=0;i OPTFLAGS = -O2 -fPIC Index: sm/trunk/externalpackages/metis/install-4.0-altix64.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-altix64.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/altix64/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-cosmos.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-cosmos.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/cosmos/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-discover.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-discover.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/discover/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-greenplanet.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-greenplanet.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/greenplanet/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-hoffman2.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-hoffman2.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/pleiades/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-linux64.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-linux64.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/linux64/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-macosx32.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-macosx32.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/macosx32/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-macosx64.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-macosx64.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/macosx64/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-pleiades.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-pleiades.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/pleiades/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-win10.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-win10.sh (revision 28275) +++ (revision ) @@ -1,25 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch -R Lib/Makefile ../configs/4.0/win7/Makefile.patch -patch Makefile.in ../configs/4.0/win7/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-4.0-win32.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-4.0-win32.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install metis-4.0 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-4.0.tar.gz' 'metis-4.0.tar.gz' - -#Untar -tar -zxvf metis-4.0.tar.gz - -#Move metis into install directory -mv metis-4.0/* install -rm -rf metis-4.0 - -#Apply patches -cd install -patch -p1 < ../metis-4.0.patch -patch Makefile.in ../configs/4.0/win32/Makefile.in.patch - -#Compile -make Index: sm/trunk/externalpackages/metis/install-5-win-msys2-gcc.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-5-win-msys2-gcc.sh (revision 28275) +++ (revision ) @@ -1,68 +1,0 @@ -#!/bin/bash -set -eu - - -# TODO -# - Move installation of GKlib to $PREFIX to Makefile instead of simply copying -# it -# - -## Constants -# -VER=5.1.0 - -PREFIX="${ISSM_DIR}/externalpackages/metis/install" - -# Cleanup -rm -rf ${PREFIX} src -mkdir ${PREFIX} src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/metis-${VER}.tar.gz" "metis-${VER}.tar.gz" - -# Unpack source -tar -zxvf metis-$VER.tar.gz - -# Move source into 'src' directory -mv metis-${VER}/* src -rm -rf metis-${VER} - -# Copy customized source and configuration files to 'src' directory -cp configs/5.1/win/msys2/Makefile src -cp configs/5.1/win/msys2/gcc/GKlib/gk_arch.h src/GKlib -cp configs/5.1/win/msys2/gcc/GKlib/gk_getopt.h src/GKlib - -# Configure -cd src -make config \ - prefix=${PREFIX} \ - shared=1 \ - cc=/usr/bin/gcc \ - cxx=/usr/bin/g++ - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi - -# Install GKlib -cp -R GKlib ${PREFIX} - -# Create link to shared version of library so that libtool can find it -# -# NOTE: MSYS2 needs to be run as administrator for this to work. -# -cd ${PREFIX}/lib -ln -s ./msys-metis.dll ./libmetis.dll - -# Create link to lib directory (PETSc, by default, looks for libraries in -# lib64/ if it detects that 64-bit integers are being used) -# -# NOTE: MSYS2 needs to be run as administrator for this to work. -# -cd ${PREFIX} -ln -s ./lib ./lib64 Index: sm/trunk/externalpackages/metis/install-5-win-msys2-mingw.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-5-win-msys2-mingw.sh (revision 28275) +++ (revision ) @@ -1,65 +1,0 @@ -#!/bin/bash -set -eu - - -# TODO -# - Move installation of GKlib to $PREFIX to Makefile instead of simply copying -# it -# - -## Constants -# -VER=5.1.0 - -PREFIX="${ISSM_DIR}/externalpackages/metis/install" - -# Cleanup -rm -rf ${PREFIX} src -mkdir ${PREFIX} src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/metis-${VER}.tar.gz" "metis-${VER}.tar.gz" - -# Unpack source -tar -zxvf metis-$VER.tar.gz - -# Move source into 'src' directory -mv metis-${VER}/* src -rm -rf metis-${VER} - -# Copy customized source and configuration files to 'src' directory -cp configs/5.1/win/msys2/Makefile src -cp configs/5.1/win/msys2/GKlib/gk_arch.h src/GKlib -cp configs/5.1/win/msys2/GKlib/gk_getopt.h src/GKlib - -# Configure -cd src -make config \ - prefix=${PREFIX} \ - shared=1 \ - cc=/mingw64/bin/gcc \ - cxx=/mingw64/bin/g++ - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi - -# Install GKlib -cp -R GKlib ${PREFIX} - -# Create link to lib directory (PETSc, by default, looks for libraries in -# lib64/ if it detects that 64-bit integers are being used) -# -# NOTE: MSYS2 needs to be run as administrator for this to work. -# -cd ${PREFIX} -ln -s ./lib ./lib64 - -# Create link to shared version of library so that libtool can find it -cd ${PREFIX}/lib -ln -s libmetis.so libmetis.dll Index: sm/trunk/externalpackages/metis/install-5.0.1-linux64.sh =================================================================== --- /issm/trunk/externalpackages/metis/install-5.0.1-linux64.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu -#metis 5.0 should be used: srand48 and drand48 are being redefined in conflict to the stdlib equivalent functions. - -#Some cleanup -rm -rf install metis-5.0.1 -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/metis-5.0.1.tar.gz' 'metis-5.0.1.tar.gz' - -#Untar -tar -zxvf metis-5.0.1.tar.gz - -#Move metis into install directory -mv metis-5.0.1/* install -rm -rf metis-5.0.1 - -#Apply patches -cd install - -#Compile metis -make config prefix="$ISSM_DIR/externalpackages/metis/install" -make install Index: /issm/trunk/externalpackages/metis/install.sh =================================================================== --- /issm/trunk/externalpackages/metis/install.sh (revision 1) +++ /issm/trunk/externalpackages/metis/install.sh (revision 1) @@ -0,0 +1,32 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of metis +version=`echo *.tar.gz | sed 's/\.tar\.gz//g' | sed 's/metis-//g'` +echo $version + +#Some cleanup +rm -rf install metis-$version + +#Create install directories +mkdir install + +#Untar +tar -zxvf metis-$version.tar.gz + +#Move metis into install directory +mv metis-$version/* install +rm -rf metis-$version + +#Apply patch +cd install +patch Makefile.in ../Makefile.in.patch + +#Compile metis +make -j $NUMCPUS + +#Patch proto.h +patch Lib/proto.h ../proto.h.patch + Index: sm/trunk/externalpackages/metis/metis-4.0.patch =================================================================== --- /issm/trunk/externalpackages/metis/metis-4.0.patch (revision 28275) +++ (revision ) @@ -1,237 +1,0 @@ -diff -crB install/Lib/kmetis.c install2/Lib/kmetis.c -*** install/Lib/kmetis.c 1998-11-30 08:26:47.000000000 -0800 ---- install2/Lib/kmetis.c 2011-06-08 15:47:33.911358942 -0700 -*************** -*** 66,72 **** - ctrl.dbglvl = options[OPTION_DBGLVL]; - } - ctrl.optype = OP_KMETIS; -! ctrl.CoarsenTo = amax((*nvtxs)/(40*log2(*nparts)), 20*(*nparts)); - ctrl.maxvwgt = 1.5*((graph.vwgt ? idxsum(*nvtxs, graph.vwgt) : (*nvtxs))/ctrl.CoarsenTo); - - InitRandom(-1); ---- 66,72 ---- - ctrl.dbglvl = options[OPTION_DBGLVL]; - } - ctrl.optype = OP_KMETIS; -! ctrl.CoarsenTo = amax((*nvtxs)/(40*log2_function(*nparts)), 20*(*nparts)); - ctrl.maxvwgt = 1.5*((graph.vwgt ? idxsum(*nvtxs, graph.vwgt) : (*nvtxs))/ctrl.CoarsenTo); - - InitRandom(-1); -diff -crB install/Lib/kvmetis.c install2/Lib/kvmetis.c -*** install/Lib/kvmetis.c 1998-11-30 08:26:47.000000000 -0800 ---- install2/Lib/kvmetis.c 2011-06-08 15:47:33.916358976 -0700 -*************** -*** 66,72 **** - ctrl.dbglvl = options[OPTION_DBGLVL]; - } - ctrl.optype = OP_KVMETIS; -! ctrl.CoarsenTo = amax((*nvtxs)/(40*log2(*nparts)), 20*(*nparts)); - ctrl.maxvwgt = 1.5*((graph.vwgt ? idxsum(*nvtxs, graph.vwgt) : (*nvtxs))/ctrl.CoarsenTo); - - InitRandom(-1); ---- 66,72 ---- - ctrl.dbglvl = options[OPTION_DBGLVL]; - } - ctrl.optype = OP_KVMETIS; -! ctrl.CoarsenTo = amax((*nvtxs)/(40*log2_function(*nparts)), 20*(*nparts)); - ctrl.maxvwgt = 1.5*((graph.vwgt ? idxsum(*nvtxs, graph.vwgt) : (*nvtxs))/ctrl.CoarsenTo); - - InitRandom(-1); -diff -crB install/Lib/Makefile install2/Lib/Makefile -*** install/Lib/Makefile 1998-09-22 05:08:29.000000000 -0700 ---- install2/Lib/Makefile 2011-06-08 15:19:00.551540482 -0700 -*************** -*** 6,31 **** - LD = $(CC) -L. - - -! OBJS = coarsen.o fm.o initpart.o match.o ccgraph.o memory.o \ -! pmetis.o pqueue.o refine.o util.o timing.o debug.o \ -! bucketsort.o graph.o stat.o kmetis.o kwayrefine.o \ -! kwayfm.o balance.o ometis.o srefine.o sfm.o separator.o \ -! mincover.o mmd.o mesh.o meshpart.o frename.o fortran.o \ -! myqsort.o compress.o parmetis.o estmem.o \ -! mpmetis.o mcoarsen.o mmatch.o minitpart.o mbalance.o \ -! mrefine.o mutil.o mfm.o mkmetis.o mkwayrefine.o mkwayfmh.o \ -! mrefine2.o minitpart2.o mbalance2.o mfm2.o \ -! kvmetis.o kwayvolrefine.o kwayvolfm.o subdomains.o - -! .c.o: -! $(CC) $(CFLAGS) -c $*.c - -! ../libmetis.a: $(OBJS) - $(AR) $@ $(OBJS) - $(RANLIB) $@ - - clean: -! rm -f *.o - - realclean: -! rm -f *.o ; rm -f ../libmetis.a ---- 6,31 ---- - LD = $(CC) -L. - - -! OBJS = coarsen.$(OBJ_EXT) fm.$(OBJ_EXT) initpart.$(OBJ_EXT) match.$(OBJ_EXT) ccgraph.$(OBJ_EXT) memory.$(OBJ_EXT) \ -! pmetis.$(OBJ_EXT) pqueue.$(OBJ_EXT) refine.$(OBJ_EXT) util.$(OBJ_EXT) timing.$(OBJ_EXT) debug.$(OBJ_EXT) \ -! bucketsort.$(OBJ_EXT) graph.$(OBJ_EXT) stat.$(OBJ_EXT) kmetis.$(OBJ_EXT) kwayrefine.$(OBJ_EXT) \ -! kwayfm.$(OBJ_EXT) balance.$(OBJ_EXT) ometis.$(OBJ_EXT) srefine.$(OBJ_EXT) sfm.$(OBJ_EXT) separator.$(OBJ_EXT) \ -! mincover.$(OBJ_EXT) mmd.$(OBJ_EXT) mesh.$(OBJ_EXT) meshpart.$(OBJ_EXT) frename.$(OBJ_EXT) fortran.$(OBJ_EXT) \ -! myqsort.$(OBJ_EXT) compress.$(OBJ_EXT) parmetis.$(OBJ_EXT) estmem.$(OBJ_EXT) \ -! mpmetis.$(OBJ_EXT) mcoarsen.$(OBJ_EXT) mmatch.$(OBJ_EXT) minitpart.$(OBJ_EXT) mbalance.$(OBJ_EXT) \ -! mrefine.$(OBJ_EXT) mutil.$(OBJ_EXT) mfm.$(OBJ_EXT) mkmetis.$(OBJ_EXT) mkwayrefine.$(OBJ_EXT) mkwayfmh.$(OBJ_EXT) \ -! mrefine2.$(OBJ_EXT) minitpart2.$(OBJ_EXT) mbalance2.$(OBJ_EXT) mfm2.$(OBJ_EXT) \ -! kvmetis.$(OBJ_EXT) kwayvolrefine.$(OBJ_EXT) kwayvolfm.$(OBJ_EXT) subdomains.$(OBJ_EXT) - -! %.$(OBJ_EXT) : %.c -! $(CC) -c $(CFLAGS) -o $@ $< - -! ../libmetis.$(LIB_EXT): $(OBJS) - $(AR) $@ $(OBJS) - $(RANLIB) $@ - - clean: -! rm -f *.$(OBJ_EXT) - - realclean: -! rm -f *.$(OBJ_EXT) ; rm -f ../libmetis.$(LIB_EXT) -diff -crB install/Lib/metis.h install2/Lib/metis.h -*** install/Lib/metis.h 1998-11-30 08:26:50.000000000 -0800 ---- install2/Lib/metis.h 2011-06-08 15:19:00.544540433 -0700 -*************** -*** 18,24 **** ---- 18,26 ---- - #else - #include - #endif -+ #ifndef WIN32 - #include -+ #endif - #include - #include - #include -diff -crB install/Lib/mkmetis.c install2/Lib/mkmetis.c -*** install/Lib/mkmetis.c 1998-11-30 08:26:48.000000000 -0800 ---- install2/Lib/mkmetis.c 2011-06-08 15:47:33.921359010 -0700 -*************** -*** 47,53 **** - ctrl.dbglvl = options[OPTION_DBGLVL]; - } - ctrl.optype = OP_KMETIS; -! ctrl.CoarsenTo = amax((*nvtxs)/(20*log2(*nparts)), 30*(*nparts)); - - ctrl.nmaxvwgt = 1.5/(1.0*ctrl.CoarsenTo); - ---- 47,53 ---- - ctrl.dbglvl = options[OPTION_DBGLVL]; - } - ctrl.optype = OP_KMETIS; -! ctrl.CoarsenTo = amax((*nvtxs)/(20*log2_function(*nparts)), 30*(*nparts)); - - ctrl.nmaxvwgt = 1.5/(1.0*ctrl.CoarsenTo); - -diff -crB install/Lib/proto.h install2/Lib/proto.h -*** install/Lib/proto.h 1998-11-30 08:26:50.000000000 -0800 ---- install2/Lib/proto.h 2011-06-08 15:47:34.009359613 -0700 -*************** -*** 230,237 **** ---- 230,243 ---- - void QUADNODALMETIS(int, int, idxtype *, idxtype *, idxtype *adjncy); - - /* meshpart.c */ -+ #ifdef __cplusplus -+ extern "C" { -+ #endif - void METIS_PartMeshNodal(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); - void METIS_PartMeshDual(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); -+ #ifdef __cplusplus -+ } -+ #endif - - /* mfm.c */ - void MocFM_2WayEdgeRefine(CtrlType *, GraphType *, float *, int); -*************** -*** 459,465 **** - void srand48(long); - int ispow2(int); - void InitRandom(int); -! int log2(int); - - - ---- 465,471 ---- - void srand48(long); - int ispow2(int); - void InitRandom(int); -! int log2_function(int); - - - -diff -crB install/Lib/rename.h install2/Lib/rename.h -*** install/Lib/rename.h 1998-11-30 08:26:50.000000000 -0800 ---- install2/Lib/rename.h 2011-06-08 15:47:34.014359647 -0700 -*************** -*** 410,416 **** - #define RandomPermute __RandomPermute - #define ispow2 __ispow2 - #define InitRandom __InitRandom -! #define log2 __log2 - - - ---- 410,417 ---- - #define RandomPermute __RandomPermute - #define ispow2 __ispow2 - #define InitRandom __InitRandom -! /* Correction bug Nadir SOUALEM*/ -! #define log2_function __log2_function - - - -diff -crB install/Lib/util.c install2/Lib/util.c -*** install/Lib/util.c 1998-11-30 08:26:50.000000000 -0800 ---- install2/Lib/util.c 2011-06-08 15:47:34.018359675 -0700 -*************** -*** 507,515 **** - } - - /************************************************************************* -! * This function returns the log2(x) - **************************************************************************/ -! int log2(int a) - { - int i; - ---- 507,515 ---- - } - - /************************************************************************* -! * This function returns the log2_function(x) - **************************************************************************/ -! int log2_function(int a) - { - int i; - -diff -crB install/Makefile install2/Makefile -*** install/Makefile 1998-09-20 11:15:31.000000000 -0700 ---- install2/Makefile 2011-06-08 15:19:00.511540204 -0700 -*************** -*** 2,9 **** - - default: - (cd Lib ; make ) -! (cd Programs ; make ) -! (cd Test ; make ) - - clean: - (cd Lib ; make clean ) ---- 2,9 ---- - - default: - (cd Lib ; make ) -! # (cd Programs ; make ) -! # (cd Test ; make ) - - clean: - (cd Lib ; make clean ) Index: /issm/trunk/externalpackages/metis/proto.h =================================================================== --- /issm/trunk/externalpackages/metis/proto.h (revision 1) +++ /issm/trunk/externalpackages/metis/proto.h (revision 1) @@ -0,0 +1,505 @@ +/* + * Copyright 1997, Regents of the University of Minnesota + * + * proto.h + * + * This file contains header files + * + * Started 10/19/95 + * George + * + * $Id: proto.h,v 1.1 1998/11/27 17:59:28 karypis Exp $ + * + */ + +/* balance.c */ +void Balance2Way(CtrlType *, GraphType *, int *, float); +void Bnd2WayBalance(CtrlType *, GraphType *, int *); +void General2WayBalance(CtrlType *, GraphType *, int *); + +/* bucketsort.c */ +void BucketSortKeysInc(int, int, idxtype *, idxtype *, idxtype *); + +/* ccgraph.c */ +void CreateCoarseGraph(CtrlType *, GraphType *, int, idxtype *, idxtype *); +void CreateCoarseGraphNoMask(CtrlType *, GraphType *, int, idxtype *, idxtype *); +void CreateCoarseGraph_NVW(CtrlType *, GraphType *, int, idxtype *, idxtype *); +GraphType *SetUpCoarseGraph(GraphType *, int, int); +void ReAdjustMemory(GraphType *, GraphType *, int); + +/* coarsen.c */ +GraphType *Coarsen2Way(CtrlType *, GraphType *); + +/* compress.c */ +void CompressGraph(CtrlType *, GraphType *, int, idxtype *, idxtype *, idxtype *, idxtype *); +void PruneGraph(CtrlType *, GraphType *, int, idxtype *, idxtype *, idxtype *, float); + +/* debug.c */ +int ComputeCut(GraphType *, idxtype *); +int CheckBnd(GraphType *); +int CheckBnd2(GraphType *); +int CheckNodeBnd(GraphType *, int); +int CheckRInfo(RInfoType *); +int CheckNodePartitionParams(GraphType *); +int IsSeparable(GraphType *); + +/* estmem.c */ +void METIS_EstimateMemory(int *, idxtype *, idxtype *, int *, int *, int *); +void EstimateCFraction(int, idxtype *, idxtype *, float *, float *); +int ComputeCoarseGraphSize(int, idxtype *, idxtype *, int, idxtype *, idxtype *, idxtype *); + +/* fm.c */ +void FM_2WayEdgeRefine(CtrlType *, GraphType *, int *, int); + +/* fortran.c */ +void Change2CNumbering(int, idxtype *, idxtype *); +void Change2FNumbering(int, idxtype *, idxtype *, idxtype *); +void Change2FNumbering2(int, idxtype *, idxtype *); +void Change2FNumberingOrder(int, idxtype *, idxtype *, idxtype *, idxtype *); +void ChangeMesh2CNumbering(int, idxtype *); +void ChangeMesh2FNumbering(int, idxtype *, int, idxtype *, idxtype *); +void ChangeMesh2FNumbering2(int, idxtype *, int, int, idxtype *, idxtype *); + +/* frename.c */ +void METIS_PARTGRAPHRECURSIVE(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_partgraphrecursive(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_partgraphrecursive_(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_partgraphrecursive__(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void METIS_WPARTGRAPHRECURSIVE(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_wpartgraphrecursive(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_wpartgraphrecursive_(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_wpartgraphrecursive__(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void METIS_PARTGRAPHKWAY(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_partgraphkway(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_partgraphkway_(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_partgraphkway__(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void METIS_WPARTGRAPHKWAY(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_wpartgraphkway(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_wpartgraphkway_(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_wpartgraphkway__(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void METIS_EDGEND(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_edgend(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_edgend_(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_edgend__(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void METIS_NODEND(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_nodend(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_nodend_(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_nodend__(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void METIS_NODEWND(int *, idxtype *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_nodewnd(int *, idxtype *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_nodewnd_(int *, idxtype *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_nodewnd__(int *, idxtype *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void METIS_PARTMESHNODAL(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +void metis_partmeshnodal(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +void metis_partmeshnodal_(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +void metis_partmeshnodal__(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +void METIS_PARTMESHDUAL(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +void metis_partmeshdual(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +void metis_partmeshdual_(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +void metis_partmeshdual__(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +void METIS_MESHTONODAL(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_meshtonodal(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_meshtonodal_(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_meshtonodal__(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void METIS_MESHTODUAL(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_meshtodual(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_meshtodual_(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void metis_meshtodual__(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void METIS_ESTIMATEMEMORY(int *, idxtype *, idxtype *, int *, int *, int *); +void metis_estimatememory(int *, idxtype *, idxtype *, int *, int *, int *); +void metis_estimatememory_(int *, idxtype *, idxtype *, int *, int *, int *); +void metis_estimatememory__(int *, idxtype *, idxtype *, int *, int *, int *); +void METIS_MCPARTGRAPHRECURSIVE(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_mcpartgraphrecursive(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_mcpartgraphrecursive_(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_mcpartgraphrecursive__(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void METIS_MCPARTGRAPHKWAY(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_mcpartgraphkway(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_mcpartgraphkway_(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_mcpartgraphkway__(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void METIS_PARTGRAPHVKWAY(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_partgraphvkway(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_partgraphvkway_(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void metis_partgraphvkway__(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void METIS_WPARTGRAPHVKWAY(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_wpartgraphvkway(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_wpartgraphvkway_(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void metis_wpartgraphvkway__(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); + +/* graph.c */ +void SetUpGraph(GraphType *, int, int, int, idxtype *, idxtype *, idxtype *, idxtype *, int); +void SetUpGraphKway(GraphType *, int, idxtype *, idxtype *); +void SetUpGraph2(GraphType *, int, int, idxtype *, idxtype *, float *, idxtype *); +void VolSetUpGraph(GraphType *, int, int, int, idxtype *, idxtype *, idxtype *, idxtype *, int); +void RandomizeGraph(GraphType *); +int IsConnectedSubdomain(CtrlType *, GraphType *, int, int); +int IsConnected(CtrlType *, GraphType *, int); +int IsConnected2(GraphType *, int); +int FindComponents(CtrlType *, GraphType *, idxtype *, idxtype *); + +/* initpart.c */ +void Init2WayPartition(CtrlType *, GraphType *, int *, float); +void InitSeparator(CtrlType *, GraphType *, float); +void GrowBisection(CtrlType *, GraphType *, int *, float); +void GrowBisectionNode(CtrlType *, GraphType *, float); +void RandomBisection(CtrlType *, GraphType *, int *, float); + +/* kmetis.c */ +void METIS_PartGraphKway(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void METIS_WPartGraphKway(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +int MlevelKWayPartitioning(CtrlType *, GraphType *, int, idxtype *, float *, float); + +/* kvmetis.c */ +void METIS_PartGraphVKway(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void METIS_WPartGraphVKway(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +int MlevelVolKWayPartitioning(CtrlType *, GraphType *, int, idxtype *, float *, float); + +/* kwayfm.c */ +void Random_KWayEdgeRefine(CtrlType *, GraphType *, int, float *, float, int, int); +void Greedy_KWayEdgeRefine(CtrlType *, GraphType *, int, float *, float, int); +void Greedy_KWayEdgeBalance(CtrlType *, GraphType *, int, float *, float, int); + +/* kwayrefine.c */ +void RefineKWay(CtrlType *, GraphType *, GraphType *, int, float *, float); +void AllocateKWayPartitionMemory(CtrlType *, GraphType *, int); +void ComputeKWayPartitionParams(CtrlType *, GraphType *, int); +void ProjectKWayPartition(CtrlType *, GraphType *, int); +int IsBalanced(idxtype *, int, float *, float); +void ComputeKWayBoundary(CtrlType *, GraphType *, int); +void ComputeKWayBalanceBoundary(CtrlType *, GraphType *, int); + +/* kwayvolfm.c */ +void Random_KWayVolRefine(CtrlType *, GraphType *, int, float *, float, int, int); +void Random_KWayVolRefineMConn(CtrlType *, GraphType *, int, float *, float, int, int); +void Greedy_KWayVolBalance(CtrlType *, GraphType *, int, float *, float, int); +void Greedy_KWayVolBalanceMConn(CtrlType *, GraphType *, int, float *, float, int); +void KWayVolUpdate(CtrlType *, GraphType *, int, int, int, idxtype *, idxtype *, idxtype *); +void ComputeKWayVolume(GraphType *, int, idxtype *, idxtype *, idxtype *); +int ComputeVolume(GraphType *, idxtype *); +void CheckVolKWayPartitionParams(CtrlType *, GraphType *, int); +void ComputeVolSubDomainGraph(GraphType *, int, idxtype *, idxtype *); +void EliminateVolSubDomainEdges(CtrlType *, GraphType *, int, float *); +void EliminateVolComponents(CtrlType *, GraphType *, int, float *, float); + +/* kwayvolrefine.c */ +void RefineVolKWay(CtrlType *, GraphType *, GraphType *, int, float *, float); +void AllocateVolKWayPartitionMemory(CtrlType *, GraphType *, int); +void ComputeVolKWayPartitionParams(CtrlType *, GraphType *, int); +void ComputeKWayVolGains(CtrlType *, GraphType *, int); +void ProjectVolKWayPartition(CtrlType *, GraphType *, int); +void ComputeVolKWayBoundary(CtrlType *, GraphType *, int); +void ComputeVolKWayBalanceBoundary(CtrlType *, GraphType *, int); + +/* match.c */ +void Match_RM(CtrlType *, GraphType *); +void Match_RM_NVW(CtrlType *, GraphType *); +void Match_HEM(CtrlType *, GraphType *); +void Match_SHEM(CtrlType *, GraphType *); + +/* mbalance.c */ +void MocBalance2Way(CtrlType *, GraphType *, float *, float); +void MocGeneral2WayBalance(CtrlType *, GraphType *, float *, float); + +/* mbalance2.c */ +void MocBalance2Way2(CtrlType *, GraphType *, float *, float *); +void MocGeneral2WayBalance2(CtrlType *, GraphType *, float *, float *); +void SelectQueue3(int, float *, float *, int *, int *, PQueueType [MAXNCON][2], float *); + +/* mcoarsen.c */ +GraphType *MCCoarsen2Way(CtrlType *, GraphType *); + +/* memory.c */ +void AllocateWorkSpace(CtrlType *, GraphType *, int); +void FreeWorkSpace(CtrlType *, GraphType *); +int WspaceAvail(CtrlType *); +idxtype *idxwspacemalloc(CtrlType *, int); +void idxwspacefree(CtrlType *, int); +float *fwspacemalloc(CtrlType *, int); +void fwspacefree(CtrlType *, int); +GraphType *CreateGraph(void); +void InitGraph(GraphType *); +void FreeGraph(GraphType *); + +/* mesh.c */ +void METIS_MeshToDual(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void METIS_MeshToNodal(int *, int *, idxtype *, int *, int *, idxtype *, idxtype *); +void GENDUALMETIS(int, int, int, idxtype *, idxtype *, idxtype *adjncy); +void TRINODALMETIS(int, int, idxtype *, idxtype *, idxtype *adjncy); +void TETNODALMETIS(int, int, idxtype *, idxtype *, idxtype *adjncy); +void HEXNODALMETIS(int, int, idxtype *, idxtype *, idxtype *adjncy); +void QUADNODALMETIS(int, int, idxtype *, idxtype *, idxtype *adjncy); + +/* meshpart.c */ +extern "C" void METIS_PartMeshNodal(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +extern "C" void METIS_PartMeshDual(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); + +/* mfm.c */ +void MocFM_2WayEdgeRefine(CtrlType *, GraphType *, float *, int); +void SelectQueue(int, float *, float *, int *, int *, PQueueType [MAXNCON][2]); +int BetterBalance(int, float *, float *, float *); +float Compute2WayHLoadImbalance(int, float *, float *); +void Compute2WayHLoadImbalanceVec(int, float *, float *, float *); + +/* mfm2.c */ +void MocFM_2WayEdgeRefine2(CtrlType *, GraphType *, float *, float *, int); +void SelectQueue2(int, float *, float *, int *, int *, PQueueType [MAXNCON][2], float *); +int IsBetter2wayBalance(int, float *, float *, float *); + +/* mincover.o */ +void MinCover(idxtype *, idxtype *, int, int, idxtype *, int *); +int MinCover_Augment(idxtype *, idxtype *, int, idxtype *, idxtype *, idxtype *, int); +void MinCover_Decompose(idxtype *, idxtype *, int, int, idxtype *, idxtype *, int *); +void MinCover_ColDFS(idxtype *, idxtype *, int, idxtype *, idxtype *, int); +void MinCover_RowDFS(idxtype *, idxtype *, int, idxtype *, idxtype *, int); + +/* minitpart.c */ +void MocInit2WayPartition(CtrlType *, GraphType *, float *, float); +void MocGrowBisection(CtrlType *, GraphType *, float *, float); +void MocRandomBisection(CtrlType *, GraphType *, float *, float); +void MocInit2WayBalance(CtrlType *, GraphType *, float *); +int SelectQueueoneWay(int, float *, float *, int, PQueueType [MAXNCON][2]); + +/* minitpart2.c */ +void MocInit2WayPartition2(CtrlType *, GraphType *, float *, float *); +void MocGrowBisection2(CtrlType *, GraphType *, float *, float *); +void MocGrowBisectionNew2(CtrlType *, GraphType *, float *, float *); +void MocInit2WayBalance2(CtrlType *, GraphType *, float *, float *); +int SelectQueueOneWay2(int, float *, PQueueType [MAXNCON][2], float *); + +/* mkmetis.c */ +void METIS_mCPartGraphKway(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +int MCMlevelKWayPartitioning(CtrlType *, GraphType *, int, idxtype *, float *); + +/* mkwayfmh.c */ +void MCRandom_KWayEdgeRefineHorizontal(CtrlType *, GraphType *, int, float *, int); +void MCGreedy_KWayEdgeBalanceHorizontal(CtrlType *, GraphType *, int, float *, int); +int AreAllHVwgtsBelow(int, float, float *, float, float *, float *); +int AreAllHVwgtsAbove(int, float, float *, float, float *, float *); +void ComputeHKWayLoadImbalance(int, int, float *, float *); +int MocIsHBalanced(int, int, float *, float *); +int IsHBalanceBetterFT(int, int, float *, float *, float *, float *); +int IsHBalanceBetterTT(int, int, float *, float *, float *, float *); + +/* mkwayrefine.c */ +void MocRefineKWayHorizontal(CtrlType *, GraphType *, GraphType *, int, float *); +void MocAllocateKWayPartitionMemory(CtrlType *, GraphType *, int); +void MocComputeKWayPartitionParams(CtrlType *, GraphType *, int); +void MocProjectKWayPartition(CtrlType *, GraphType *, int); +void MocComputeKWayBalanceBoundary(CtrlType *, GraphType *, int); + +/* mmatch.c */ +void MCMatch_RM(CtrlType *, GraphType *); +void MCMatch_HEM(CtrlType *, GraphType *); +void MCMatch_SHEM(CtrlType *, GraphType *); +void MCMatch_SHEBM(CtrlType *, GraphType *, int); +void MCMatch_SBHEM(CtrlType *, GraphType *, int); +float BetterVBalance(int, int, float *, float *, float *); +int AreAllVwgtsBelowFast(int, float *, float *, float); + +/* mmd.c */ +void genmmd(int, idxtype *, idxtype *, idxtype *, idxtype *, int , idxtype *, idxtype *, idxtype *, idxtype *, int, int *); +void mmdelm(int, idxtype *xadj, idxtype *, idxtype *, idxtype *, idxtype *, idxtype *, idxtype *, idxtype *, int, int); +int mmdint(int, idxtype *xadj, idxtype *, idxtype *, idxtype *, idxtype *, idxtype *, idxtype *, idxtype *); +void mmdnum(int, idxtype *, idxtype *, idxtype *); +void mmdupd(int, int, idxtype *, idxtype *, int, int *, idxtype *, idxtype *, idxtype *, idxtype *, idxtype *, idxtype *, int, int *tag); + +/* mpmetis.c */ +void METIS_mCPartGraphRecursive(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void METIS_mCHPartGraphRecursive(int *, int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void METIS_mCPartGraphRecursiveInternal(int *, int *, idxtype *, idxtype *, float *, idxtype *, int *, int *, int *, idxtype *); +void METIS_mCHPartGraphRecursiveInternal(int *, int *, idxtype *, idxtype *, float *, idxtype *, int *, float *, int *, int *, idxtype *); +int MCMlevelRecursiveBisection(CtrlType *, GraphType *, int, idxtype *, float, int); +int MCHMlevelRecursiveBisection(CtrlType *, GraphType *, int, idxtype *, float *, int); +void MCMlevelEdgeBisection(CtrlType *, GraphType *, float *, float); +void MCHMlevelEdgeBisection(CtrlType *, GraphType *, float *, float *); + +/* mrefine.c */ +void MocRefine2Way(CtrlType *, GraphType *, GraphType *, float *, float); +void MocAllocate2WayPartitionMemory(CtrlType *, GraphType *); +void MocCompute2WayPartitionParams(CtrlType *, GraphType *); +void MocProject2WayPartition(CtrlType *, GraphType *); + +/* mrefine2.c */ +void MocRefine2Way2(CtrlType *, GraphType *, GraphType *, float *, float *); + +/* mutil.c */ +int AreAllVwgtsBelow(int, float, float *, float, float *, float); +int AreAnyVwgtsBelow(int, float, float *, float, float *, float); +int AreAllVwgtsAbove(int, float, float *, float, float *, float); +float ComputeLoadImbalance(int, int, float *, float *); +int AreAllBelow(int, float *, float *); + +/* myqsort.c */ +void iidxsort(int, idxtype *); +void iintsort(int, int *); +void ikeysort(int, KeyValueType *); +void ikeyvalsort(int, KeyValueType *); + +/* ometis.c */ +void METIS_EdgeND(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void METIS_NodeND(int *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void METIS_NodeWND(int *, idxtype *, idxtype *, idxtype *, int *, int *, idxtype *, idxtype *); +void MlevelNestedDissection(CtrlType *, GraphType *, idxtype *, float, int); +void MlevelNestedDissectionCC(CtrlType *, GraphType *, idxtype *, float, int); +void MlevelNodeBisectionMultiple(CtrlType *, GraphType *, int *, float); +void MlevelNodeBisection(CtrlType *, GraphType *, int *, float); +void SplitGraphOrder(CtrlType *, GraphType *, GraphType *, GraphType *); +void MMDOrder(CtrlType *, GraphType *, idxtype *, int); +int SplitGraphOrderCC(CtrlType *, GraphType *, GraphType *, int, idxtype *, idxtype *); + +/* parmetis.c */ +void METIS_PartGraphKway2(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void METIS_WPartGraphKway2(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +void METIS_NodeNDP(int, idxtype *, idxtype *, int, int *, idxtype *, idxtype *, idxtype *); +void MlevelNestedDissectionP(CtrlType *, GraphType *, idxtype *, int, int, int, idxtype *); +void METIS_NodeComputeSeparator(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, idxtype *); +void METIS_EdgeComputeSeparator(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, idxtype *); + +/* pmetis.c */ +void METIS_PartGraphRecursive(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, int *, int *, idxtype *); +void METIS_WPartGraphRecursive(int *, idxtype *, idxtype *, idxtype *, idxtype *, int *, int *, int *, float *, int *, int *, idxtype *); +int MlevelRecursiveBisection(CtrlType *, GraphType *, int, idxtype *, float *, float, int); +void MlevelEdgeBisection(CtrlType *, GraphType *, int *, float); +void SplitGraphPart(CtrlType *, GraphType *, GraphType *, GraphType *); +void SetUpSplitGraph(GraphType *, GraphType *, int, int); + +/* pqueue.c */ +void PQueueInit(CtrlType *ctrl, PQueueType *, int, int); +void PQueueReset(PQueueType *); +void PQueueFree(CtrlType *ctrl, PQueueType *); +int PQueueGetSize(PQueueType *); +int PQueueInsert(PQueueType *, int, int); +int PQueueDelete(PQueueType *, int, int); +int PQueueUpdate(PQueueType *, int, int, int); +void PQueueUpdateUp(PQueueType *, int, int, int); +int PQueueGetMax(PQueueType *); +int PQueueSeeMax(PQueueType *); +int PQueueGetKey(PQueueType *); +int CheckHeap(PQueueType *); + +/* refine.c */ +void Refine2Way(CtrlType *, GraphType *, GraphType *, int *, float ubfactor); +void Allocate2WayPartitionMemory(CtrlType *, GraphType *); +void Compute2WayPartitionParams(CtrlType *, GraphType *); +void Project2WayPartition(CtrlType *, GraphType *); + +/* separator.c */ +void ConstructSeparator(CtrlType *, GraphType *, float); +void ConstructMinCoverSeparator0(CtrlType *, GraphType *, float); +void ConstructMinCoverSeparator(CtrlType *, GraphType *, float); + +/* sfm.c */ +void FM_2WayNodeRefine(CtrlType *, GraphType *, float, int); +void FM_2WayNodeRefineEqWgt(CtrlType *, GraphType *, int); +void FM_2WayNodeRefine_OneSided(CtrlType *, GraphType *, float, int); +void FM_2WayNodeBalance(CtrlType *, GraphType *, float); +int ComputeMaxNodeGain(int, idxtype *, idxtype *, idxtype *); + +/* srefine.c */ +void Refine2WayNode(CtrlType *, GraphType *, GraphType *, float); +void Allocate2WayNodePartitionMemory(CtrlType *, GraphType *); +void Compute2WayNodePartitionParams(CtrlType *, GraphType *); +void Project2WayNodePartition(CtrlType *, GraphType *); + +/* stat.c */ +void ComputePartitionInfo(GraphType *, int, idxtype *); +void ComputePartitionInfoBipartite(GraphType *, int, idxtype *); +void ComputePartitionBalance(GraphType *, int, idxtype *, float *); +float ComputeElementBalance(int, int, idxtype *); + +/* subdomains.c */ +void Random_KWayEdgeRefineMConn(CtrlType *, GraphType *, int, float *, float, int, int); +void Greedy_KWayEdgeBalanceMConn(CtrlType *, GraphType *, int, float *, float, int); +void PrintSubDomainGraph(GraphType *, int, idxtype *); +void ComputeSubDomainGraph(GraphType *, int, idxtype *, idxtype *); +void EliminateSubDomainEdges(CtrlType *, GraphType *, int, float *); +void MoveGroupMConn(CtrlType *, GraphType *, idxtype *, idxtype *, int, int, int, idxtype *); +void EliminateComponents(CtrlType *, GraphType *, int, float *, float); +void MoveGroup(CtrlType *, GraphType *, int, int, int, idxtype *, idxtype *); + +/* timing.c */ +void InitTimers(CtrlType *); +void PrintTimers(CtrlType *); +double seconds(void); + +/* util.c */ +void errexit(char *,...); +#ifndef DMALLOC +int *imalloc(int, char *); +idxtype *idxmalloc(int, char *); +float *fmalloc(int, char *); +int *ismalloc(int, int, char *); +idxtype *idxsmalloc(int, idxtype, char *); +void *GKmalloc(int, char *); +#endif +/*void GKfree(void **,...); */ +int *iset(int n, int val, int *x); +idxtype *idxset(int n, idxtype val, idxtype *x); +float *sset(int n, float val, float *x); +int iamax(int, int *); +int idxamax(int, idxtype *); +int idxamax_strd(int, idxtype *, int); +int samax(int, float *); +int samax2(int, float *); +int idxamin(int, idxtype *); +int samin(int, float *); +int idxsum(int, idxtype *); +int idxsum_strd(int, idxtype *, int); +void idxadd(int, idxtype *, idxtype *); +int charsum(int, char *); +int isum(int, int *); +float ssum(int, float *); +float ssum_strd(int n, float *x, int); +void sscale(int n, float, float *x); +float snorm2(int, float *); +float sdot(int n, float *, float *); +void saxpy(int, float, float *, int, float *, int); +void RandomPermute(int, idxtype *, int); +double drand48(); +void srand48(long); +int ispow2(int); +void InitRandom(int); +int log2(int); + + + + + + + + + + +/*************************************************************** +* Programs Directory +****************************************************************/ + +/* io.c */ +void ReadGraph(GraphType *, char *, int *); +void WritePartition(char *, idxtype *, int, int); +void WriteMeshPartition(char *, int, int, idxtype *, int, idxtype *); +void WritePermutation(char *, idxtype *, int); +int CheckGraph(GraphType *); +idxtype *ReadMesh(char *, int *, int *, int *); +void WriteGraph(char *, int, idxtype *, idxtype *); + +/* smbfactor.c */ +void ComputeFillIn(GraphType *, idxtype *); +idxtype ComputeFillIn2(GraphType *, idxtype *); +int smbfct(int, idxtype *, idxtype *, idxtype *, idxtype *, idxtype *, int *, idxtype *, idxtype *, int *); + + +/*************************************************************** +* Test Directory +****************************************************************/ +void Test_PartGraph(int, idxtype *, idxtype *); +int VerifyPart(int, idxtype *, idxtype *, idxtype *, idxtype *, int, int, idxtype *); +int VerifyWPart(int, idxtype *, idxtype *, idxtype *, idxtype *, int, float *, int, idxtype *); +void Test_PartGraphV(int, idxtype *, idxtype *); +int VerifyPartV(int, idxtype *, idxtype *, idxtype *, idxtype *, int, int, idxtype *); +int VerifyWPartV(int, idxtype *, idxtype *, idxtype *, idxtype *, int, float *, int, idxtype *); +void Test_PartGraphmC(int, idxtype *, idxtype *); +int VerifyPartmC(int, int, idxtype *, idxtype *, idxtype *, idxtype *, int, float *, int, idxtype *); +void Test_ND(int, idxtype *, idxtype *); +int VerifyND(int, idxtype *, idxtype *); + Index: /issm/trunk/externalpackages/metis/proto.h.patch =================================================================== --- /issm/trunk/externalpackages/metis/proto.h.patch (revision 1) +++ /issm/trunk/externalpackages/metis/proto.h.patch (revision 1) @@ -0,0 +1,6 @@ +233,234c233,234 +< void METIS_PartMeshNodal(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +< void METIS_PartMeshDual(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +--- +> extern "C" void METIS_PartMeshNodal(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); +> extern "C" void METIS_PartMeshDual(int *, int *, idxtype *, int *, int *, int *, int *, idxtype *, idxtype *); Index: /issm/trunk/externalpackages/mpich2/Examples.Makefile.patch =================================================================== --- /issm/trunk/externalpackages/mpich2/Examples.Makefile.patch (revision 1) +++ /issm/trunk/externalpackages/mpich2/Examples.Makefile.patch (revision 1) @@ -0,0 +1,6 @@ +72,73c72,73 +< cpi: cpi.o ../lib/lib${MPILIBNAME}.a +< $(C_LINK) $(LDFLAGS) -o cpi cpi.o -lm ${LIBS} +--- +> cpi: cpi.o ../lib/lib${MPILIBNAME}.a +> $(C_LINK) $(LDFLAGS) -o cpi cpi.o -lm ${LIBS} ../lib/libmpich.la Index: /issm/trunk/externalpackages/mpich2/install.sh =================================================================== --- /issm/trunk/externalpackages/mpich2/install.sh (revision 1) +++ /issm/trunk/externalpackages/mpich2/install.sh (revision 1) @@ -0,0 +1,35 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of mpich2 +version=`echo *.tar.gz | sed 's/\.tar\.gz//g' | sed 's/mpich2-//g'` + +#Some cleanup +rm -rf src install mpich2-$version + +#Create src and install directories +mkdir src install + +#Untar +tar -zxvf mpich2-$version.tar.gz + +#Move mpich2 into src directory +mv mpich2-$version/* src +rm -rf mpich2-$version + +#Configure mpich2 +cd src +./configure --prefix="$ISSM_DIR/packages/mpich2/install" --enable-sharedlibs=gcc --enable-f91=gfortran + +#Apply Patch to examples +cd examples +patch Makefile ../../Examples.Makefile.patch + +#Compile mpich2 +cd ../ +make -j $NUMCPUS + +#Install +make install Index: /issm/trunk/externalpackages/mtoc/install.sh =================================================================== --- /issm/trunk/externalpackages/mtoc/install.sh (revision 1) +++ /issm/trunk/externalpackages/mtoc/install.sh (revision 1) @@ -0,0 +1,28 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of mtoc +name=`echo *.tgz | sed 's/\.tgz//g'` +echo $name + +#Some cleanup +rm -rf src install $name + +#Create src and install directories +mkdir src install + +#Untar +tar -zxvf $name.tgz + +#Move mtoc to src directory +mv $name/* src/ +rm -rf $name + +#Compile mtoc +cd src +rm -rf mtoc mtoc.exe + +flex mtoc.l +gcc -o ../install/mtoc lex.yy.c -lfl Index: sm/trunk/externalpackages/netcdf/install-4.7-parallel-static-with_tests.sh =================================================================== --- /issm/trunk/externalpackages/netcdf/install-4.7-parallel-static-with_tests.sh (revision 28275) +++ (revision ) @@ -1,74 +1,0 @@ -#!/bin/bash -set -eu - - -# Dependencies -# - MPI implementation (for parallel I/O support) -# - hdf5 (1.8.9 / 1.10.1 or later, for netCDF-4 support) -# - zlib (1.2.5 or later, for netCDF-4 compression) -# - curl (7.18.0 or later, for DAP remote access client support) -# -# Sources: -# - https://www.unidata.ucar.edu/software/netcdf/documentation/NUG/getting_and_building_netcdf.html#building -# -# NOTE: -# - Certain configuration tests fail if libraries are not supplied explicitly -# -# TODO: -# - Compile and link curl statically (issue with DAP and system libs on macOS -# with more restrictive Gatekeeper; see also --disable-dap option in -# configuration) -# - -# Constants -# -VER="4.7.2" - -PREFIX="${ISSM_DIR}/externalpackages/netcdf/install" # Set to location where external package should be installed - -# Environment -# -export CC=mpicc -export CPPFLAGS="-I${ZLIB_ROOT}/include" - -export ZLIB="${ZLIB_ROOT}/lib/libz.a" - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/netcdf-c-${VER}.tar.gz" "netcdf-c-${VER}.tar.gz" - -# Unpack source -tar -zxvf netcdf-c-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Move source to 'src' directory -mv netcdf-c-${VER}/* src -rm -rf netcdf-c-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --disable-shared \ - --disable-dependency-tracking \ - --enable-fast-install \ - --disable-doxygen \ - --enable-netcdf4 \ - --disable-dap \ - --disable-examples \ - --disable-filter-testing \ - --disable-dap-remote-tests \ - --enable-parallel-tests - -# Compile and install -if [ $# -eq 0 ]; then - make - make check - make install -else - make -j $1 - make -j $1 check - make -j $1 install -fi Index: sm/trunk/externalpackages/netcdf/install-4.7-parallel-static.sh =================================================================== --- /issm/trunk/externalpackages/netcdf/install-4.7-parallel-static.sh (revision 28275) +++ (revision ) @@ -1,71 +1,0 @@ -#!/bin/bash -set -eu - - -# Dependencies -# - MPI implementation (for parallel I/O support) -# - hdf5 (1.8.9 / 1.10.1 or later, for netCDF-4 support) -# - zlib (1.2.5 or later, for netCDF-4 compression) -# - curl (7.18.0 or later, for DAP remote access client support) -# -# Sources: -# - https://www.unidata.ucar.edu/software/netcdf/documentation/NUG/getting_and_building_netcdf.html#building -# -# NOTE: -# - Certain configuration tests fail if libraries are not supplied explicitly -# -# TODO: -# - Compile and link curl statically (issue with DAP and system libs on macOS -# with more restrictive Gatekeeper; see also --disable-dap option in -# configuration) -# - -# Constants -# -VER="4.7.2" - -PREFIX="${ISSM_DIR}/externalpackages/netcdf/install" # Set to location where external package should be installed - -# Environment -# -export CC=mpicc -export CPPFLAGS="-I${ZLIB_ROOT}/include" - -export ZLIB="${ZLIB_ROOT}/lib/libz.a" - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/netcdf-c-${VER}.tar.gz" "netcdf-c-${VER}.tar.gz" - -# Unpack source -tar -zxvf netcdf-c-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Move source to 'src' directory -mv netcdf-c-${VER}/* src -rm -rf netcdf-c-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --disable-shared \ - --disable-dependency-tracking \ - --enable-fast-install \ - --disable-doxygen \ - --enable-netcdf4 \ - --disable-dap \ - --disable-testsets \ - --disable-examples \ - --disable-filter-testing - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi Index: sm/trunk/externalpackages/netcdf/install-4.7-parallel-with_tests.sh =================================================================== --- /issm/trunk/externalpackages/netcdf/install-4.7-parallel-with_tests.sh (revision 28275) +++ (revision ) @@ -1,64 +1,0 @@ -#!/bin/bash -set -eu - - -# Dependencies -# - MPI implementation (for parallel I/O support) -# - hdf5 (1.8.9 / 1.10.1 or later, for netCDF-4 support) -# - zlib (1.2.5 or later, for netCDF-4 compression) -# - curl (7.18.0 or later, for DAP remote access client support) -# -# Sources: -# - https://www.unidata.ucar.edu/software/netcdf/documentation/NUG/getting_and_building_netcdf.html#building -# - -# Constants -# -VER="4.7.2" - -PREFIX="${ISSM_DIR}/externalpackages/netcdf/install" # Set to location where external package should be installed - -# Environment -# -export CC=mpicc -export CPPFLAGS="-I${HDF5_ROOT}/include -I${CURL_ROOT}/include -I${ZLIB_ROOT}/include" -export LDFLAGS="-L${HDF5_ROOT}/lib -L${CURL_ROOT}/lib -L${ZLIB_ROOT}/lib" - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/netcdf-c-${VER}.tar.gz" "netcdf-c-${VER}.tar.gz" - -# Unpack source -tar -zxvf netcdf-c-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Move source to 'src' directory -mv netcdf-c-${VER}/* src -rm -rf netcdf-c-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --disable-static \ - --disable-dependency-tracking \ - --enable-fast-install \ - --disable-doxygen \ - --enable-netcdf4 \ - --disable-examples \ - --disable-filter-testing \ - --disable-dap-remote-tests \ - --enable-parallel-tests - -# Compile, test, and install -if [ $# -eq 0 ]; then - make - make check - make install -else - make -j $1 - make -j $1 check - make -j $1 install -fi Index: sm/trunk/externalpackages/netcdf/install-4.7-parallel.sh =================================================================== --- /issm/trunk/externalpackages/netcdf/install-4.7-parallel.sh (revision 28275) +++ (revision ) @@ -1,61 +1,0 @@ -#!/bin/bash -set -eu - - -# Dependencies -# - MPI implementation (for parallel I/O support) -# - hdf5 (1.8.9 / 1.10.1 or later, for netCDF-4 support) -# - zlib (1.2.5 or later, for netCDF-4 compression) -# - curl (7.18.0 or later, for DAP remote access client support) -# -# Sources: -# - https://www.unidata.ucar.edu/software/netcdf/documentation/NUG/getting_and_building_netcdf.html#building -# - -# Constants -# -VER="4.7.2" - -PREFIX="${ISSM_DIR}/externalpackages/netcdf/install" # Set to location where external package should be installed - -# Environment -# -export CC=mpicc -export CPPFLAGS="-I${HDF5_ROOT}/include -I${CURL_ROOT}/include -I${ZLIB_ROOT}/include" -export LDFLAGS="-L${HDF5_ROOT}/lib -L${CURL_ROOT}/lib -L${ZLIB_ROOT}/lib" - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/netcdf-c-${VER}.tar.gz" "netcdf-c-${VER}.tar.gz" - -# Unpack source -tar -zxvf netcdf-c-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Move source to 'src' directory -mv netcdf-c-${VER}/* src -rm -rf netcdf-c-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --disable-static \ - --disable-dependency-tracking \ - --enable-fast-install \ - --disable-doxygen \ - --enable-netcdf4 \ - --disable-testsets \ - --disable-examples \ - --disable-filter-testing - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi Index: sm/trunk/externalpackages/netcdf/install-4.7-with_tests.sh =================================================================== --- /issm/trunk/externalpackages/netcdf/install-4.7-with_tests.sh (revision 28275) +++ (revision ) @@ -1,62 +1,0 @@ -#!/bin/bash -set -eu - - -# Dependencies -# - MPI implementation (for parallel I/O support) -# - hdf5 (1.8.9 / 1.10.1 or later, for netCDF-4 support) -# - zlib (1.2.5 or later, for netCDF-4 compression) -# - curl (7.18.0 or later, for DAP remote access client support) -# -# Sources: -# - https://www.unidata.ucar.edu/software/netcdf/documentation/NUG/getting_and_building_netcdf.html#building -# - -# Constants -# -VER="4.7.2" - -PREFIX="${ISSM_DIR}/externalpackages/netcdf/install" # Set to location where external package should be installed - -# Environment -# -export CPPFLAGS="-I${HDF5_ROOT}/include -I${CURL_ROOT}/include -I${ZLIB_ROOT}/include" -export LDFLAGS="-L${HDF5_ROOT}/lib -L${CURL_ROOT}/lib -L${ZLIB_ROOT}/lib" - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/netcdf-c-${VER}.tar.gz" "netcdf-c-${VER}.tar.gz" - -# Unpack source -tar -zxvf netcdf-c-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Move source to 'src' directory -mv netcdf-c-${VER}/* src -rm -rf netcdf-c-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --disable-static \ - --disable-dependency-tracking \ - --enable-fast-install \ - --disable-doxygen \ - --enable-netcdf4 \ - --disable-filter-testing \ - --disable-examples \ - --disable-dap-remote-tests - -# Compile, test, and install -if [ $# -eq 0 ]; then - make - make check - make install -else - make - make -j $1 check - make -j $1 install -fi Index: sm/trunk/externalpackages/netcdf/install-4.7.sh =================================================================== --- /issm/trunk/externalpackages/netcdf/install-4.7.sh (revision 28275) +++ (revision ) @@ -1,59 +1,0 @@ -#!/bin/bash -set -eu - - -# Dependencies -# - MPI implementation (for parallel I/O support) -# - hdf5 (1.8.9 / 1.10.1 or later, for netCDF-4 support) -# - zlib (1.2.5 or later, for netCDF-4 compression) -# - curl (7.18.0 or later, for DAP remote access client support) -# -# Sources: -# - https://www.unidata.ucar.edu/software/netcdf/documentation/NUG/getting_and_building_netcdf.html#building -# - -# Constants -# -VER="4.7.2" - -PREFIX="${ISSM_DIR}/externalpackages/netcdf/install" # Set to location where external package should be installed - -# Environment -# -export CPPFLAGS="-I${HDF5_ROOT}/include -I${CURL_ROOT}/include -I${ZLIB_ROOT}/include" -export LDFLAGS="-L${HDF5_ROOT}/lib -L${CURL_ROOT}/lib -L${ZLIB_ROOT}/lib" - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/netcdf-c-${VER}.tar.gz" "netcdf-c-${VER}.tar.gz" - -# Unpack source -tar -zxvf netcdf-c-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} src - -# Move source to 'src' directory -mv netcdf-c-${VER}/* src -rm -rf netcdf-c-${VER} - -# Configure -cd src -./configure \ - --prefix="${PREFIX}" \ - --disable-static \ - --disable-dependency-tracking \ - --enable-fast-install \ - --disable-doxygen \ - --disable-testsets \ - --disable-examples \ - --enable-netcdf4 - -# Compile and install -if [ $# -eq 0 ]; then - make - make install -else - make -j $1 - make -j $1 install -fi Index: /issm/trunk/externalpackages/netcdf/install.sh =================================================================== --- /issm/trunk/externalpackages/netcdf/install.sh (revision 1) +++ /issm/trunk/externalpackages/netcdf/install.sh (revision 1) @@ -0,0 +1,31 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of netcdf +version=`echo *.tar.gz | sed 's/\.tar\.gz//g' | sed 's/netcdf-//g'` + +#Some cleanup +rm -rf install netcdf-$version + +#Create install directories +mkdir install + +#Untar +tar -zxvf netcdf-$version.tar.gz + +#Move netcdf to install directory +rm -rf install/* +mv netcdf-$version/* install/ +rm -rf netcdf-$version + +#Configure netcdf +cd install +./configure --prefix="$ISSM_DIR/packages/netcdf/install" + +#Compile netcdf +make -j $NUMCPUS + +#Install +make install Index: sm/trunk/externalpackages/petsc/install-3.14-discover.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-discover.sh (revision 28275) +++ (revision ) @@ -1,54 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.14.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./config/configure.py \ - COPTFLAGS="-g -O3" CXXOPTFLAGS="-g -O3" FOPTFLAGS="-g -O3" \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --with-blas-lapack-dir="/usr/local/intel/oneapi/2021/mkl/2021.4.0/" \ - --with-cc="/usr/local/intel/oneapi/2021/mpi/2021.4.0/bin/mpicc" \ - --with-cxx="/usr/local/intel/oneapi/2021/mpi/2021.4.0/bin/mpicxx" \ - --with-fc="/usr/local/intel/oneapi/2021/mpi/2021.4.0/bin/mpif90" \ - --known-mpi-shared-libraries=1 \ - --known-64-bit-blas-indices \ - --known-mpi-long-double=1 \ - --known-mpi-int64_t=1 \ - --known-mpi-c-double-complex=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-greenplanet.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-greenplanet.sh (revision 28275) +++ (revision ) @@ -1,54 +1,0 @@ -#!/bin/bash -set -eu - - -# WARNING: Make sure you have the right MPI - -## Constants -# -VER="3.14.0" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -#configure -cd ${PETSC_DIR} -./config/configure.py \ - COPTFLAGS="-g -O3" CXXOPTFLAGS="-g -O3" FOPTFLAGS="-g -O3" \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-blas-lapack-dir="/sopt/INTEL/compilers_and_libraries_2018.3.222/linux/mkl/" \ - --with-mpi-dir="/sopt/OpenMPI/3.1.2/intel-2018.3-slim/" \ - --known-mpi-shared-libraries=1 \ - --known-64-bit-blas-indices \ - --known-mpi-long-double=1 \ - --known-mpi-int64_t=1 \ - --known-mpi-c-double-complex=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-linux-static.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-linux-static.sh (revision 28275) +++ (revision ) @@ -1,58 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.14.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Cannot use --with-fpic option when compiling static libs, -# -# Cannot determine compiler PIC flags if shared libraries is turned off -# Either run using --with-shared-libraries or --with-pic=0 and supply the -# compiler PIC flag via CFLAGS, CXXXFLAGS, and FCFLAGS -# -cd ${PETSC_DIR} -./configure.py \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-shared-libraries=0 \ - --CFLAGS="-fPIC" \ - --CXXFLAGS="-fPIC" \ - --FFLAGS="-fPIC" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 \ - --download-hdf5=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-linux.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-linux.sh (revision 28275) +++ (revision ) @@ -1,47 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.14.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./config/configure.py \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 \ - --download-hdf5=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-mac-static.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-mac-static.sh (revision 28275) +++ (revision ) @@ -1,68 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.14.6" - -PETSC_DIR=${ISSM_DIR}/externalpackages/petsc/src # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Modify source so that Python 3 can be used to compile PETSc -sed -i'' 's|#!/usr/bin/env python|#!/usr/bin/env python3|g' ${PETSC_DIR}/config/configure.py - -# Modify source so that Python >= 3.9 can be used to compile PETSc -sed -i'' 's|thread.isAlive|thread.is_alive|g' ${PETSC_DIR}/config/BuildSystem/script.py - -# Configure -# -# NOTE: -# - Cannot use --with-fpic option when compiling static libs, -# -# Cannot determine compiler PIC flags if shared libraries is turned off -# Either run using --with-shared-libraries or --with-pic=0 and supply the -# compiler PIC flag via CFLAGS, CXXXFLAGS, and FCFLAGS -# -# - Added -Wno-error=implicit-function-declaration to CFLAGS for Clang >= 12. -# (may need to remove it for earlier versions not using the C99 standard). -# - Added -static-libgfortran to all macOS static builds, but this will not -# work out of the box on Linux. -# -cd ${PETSC_DIR} -./config/configure.py \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-shared-libraries=0 \ - --CFLAGS="-fPIC -Wno-error=implicit-function-declaration" \ - --CXXFLAGS="-fPIC" \ - --FFLAGS="-fPIC -static-libgfortran" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-mac-with-hdf5-static.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-mac-with-hdf5-static.sh (revision 28275) +++ (revision ) @@ -1,69 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.14.6" - -PETSC_DIR=${ISSM_DIR}/externalpackages/petsc/src # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Modify source so that Python 3 can be used to compile PETSc -sed -i'' 's|#!/usr/bin/env python|#!/usr/bin/env python3|g' ${PETSC_DIR}/config/configure.py - -# Modify source so that Python >= 3.9 can be used to compile PETSc -sed -i'' 's|thread.isAlive|thread.is_alive|g' ${PETSC_DIR}/config/BuildSystem/script.py - -# Configure -# -# NOTE: -# - Cannot use --with-fpic option when compiling static libs, -# -# Cannot determine compiler PIC flags if shared libraries is turned off -# Either run using --with-shared-libraries or --with-pic=0 and supply the -# compiler PIC flag via CFLAGS, CXXXFLAGS, and FCFLAGS -# -# - Added -Wno-error=implicit-function-declaration to CFLAGS for Clang >= 12. -# (may need to remove it for earlier versions not using the C99 standard). -# - Added -static-libgfortran to all macOS static builds, but this will not -# work out of the box on Linux. -# -cd ${PETSC_DIR} -./config/configure.py \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-shared-libraries=0 \ - --CFLAGS="-fPIC -Wno-error=implicit-function-declaration" \ - --CXXFLAGS="-fPIC" \ - --FFLAGS="-fPIC -static-libgfortran" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 \ - --download-hdf5=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-mac-with-hdf5.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-mac-with-hdf5.sh (revision 28275) +++ (revision ) @@ -1,59 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.14.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Modify source so that Python 3 can be used to compile PETSc -sed -i'' 's|#!/usr/bin/env python|#!/usr/bin/env python3|g' ${PETSC_DIR}/config/configure.py - -# Modify source so that Python >= 3.9 can be used to compile PETSc -sed -i'' 's|thread.isAlive|thread.is_alive|g' ${PETSC_DIR}/config/BuildSystem/script.py - -# Configure -# -# NOTE: -# - Added -Wno-error=implicit-function-declaration to CFLAGS for Clang >= 12. -# (may need to remove it for earlier versions not using the C99 standard). -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --CFLAGS="-Wno-error=implicit-function-declaration" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 \ - --download-hdf5=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-mac.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-mac.sh (revision 28275) +++ (revision ) @@ -1,58 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.14.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Modify source so that Python 3 can be used to compile PETSc -sed -i'' 's|#!/usr/bin/env python|#!/usr/bin/env python3|g' ${PETSC_DIR}/config/configure.py - -# Modify source so that Python >= 3.9 can be used to compile PETSc -sed -i'' 's|thread.isAlive|thread.is_alive|g' ${PETSC_DIR}/config/BuildSystem/script.py - -# Configure -# -# NOTE: -# - Added -Wno-error=implicit-function-declaration to CFLAGS for Clang >= 12. -# (may need to remove it for earlier versions not using the C99 standard). -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --CFLAGS="-Wno-error=implicit-function-declaration" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-pleiades.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-pleiades.sh (revision 28275) +++ (revision ) @@ -1,50 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.14.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./config/configure.py \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --CFLAGS="-g -O3" \ - --CXXFLAGS="-g -O3" \ - --FFLAGS="-g -O3" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --with-batch=1 \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl" \ - --with-scalapack-include=/nasa/intel/Compiler/2018.3.222/mkl/include \ - --with-scalapack-lib="/nasa/intel/Compiler/2018.3.222/mkl/lib/intel64/libmkl_scalapack_lp64.so /nasa/intel/Compiler/2018.3.222/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=0 \ - --download-mumps=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-tetralith.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-tetralith.sh (revision 28275) +++ (revision ) @@ -1,54 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.14.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./config/configure.py \ - COPTFLAGS="-g -O2" CXXOPTFLAGS="-g -O2" FOPTFLAGS="-g -O2" \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --with-blas-lapack-dir="/software/sse/easybuild/prefix/software/imkl/2018.1.163-iimpi-2018a/mkl" \ - --with-cc="/software/sse/easybuild/prefix/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/bin64/mpicc" \ - --with-cxx="/software/sse/easybuild/prefix/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/bin64/mpicxx" \ - --with-fc="/software/sse/easybuild/prefix/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/bin64/mpiifort" \ - --known-mpi-shared-libraries=1 \ - --known-64-bit-blas-indices \ - --known-mpi-long-double=1 \ - --known-mpi-int64_t=1 \ - --known-mpi-c-double-complex=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.14-win-msys2-mingw-msmpi-static.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-win-msys2-mingw-msmpi-static.sh (revision 28275) +++ (revision ) @@ -1,88 +1,0 @@ -#!/bin/bash -set -u # NOTE: Do not set -e as it will cause this script to fail when there are errors in underlying Python scripts - -# NOTE: -# - You must install various needed packages with, -# -# pacman -S mingw-w64-x86_64-toolchain python -# -# - You must use MSYS2 MinGW 64-bit version of cmake to be able to install -# external packages correctly, -# -# pacman -R mingw-w64-x86_64-cmake -# -# Sources: -# - https://gitlab.com/petsc/petsc/-/issues/820#note_487483240 -# - -## Constants -# -VER="3.14.6" - -MAKEFILE_GENERATOR='-G "MSYS Makefiles"' -PETSC_ARCH="arch-mswin-c-opt" -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Patch source -sed -i -e 's|#!/usr/bin/env python|#!/usr/bin/python3|' ${PETSC_DIR}/config/configure.py -sed -i 's| chkusingwindowspython()|# chkusingwindowspython()|' ${PETSC_DIR}/config/configure.py -sed -i 's|(MAKEFLAGS)|(MAKEFLAGS:w=)|' ${PETSC_DIR}/makefile ${PETSC_DIR}/lib/petsc/conf/rules # Fix for issue with GNUMake 4.4.1 (https://gitlab.com/petsc/petsc/-/merge_requests/6140) - -# Configure -# - Cannot use --with-fpic option when compiling static libs, -# -# Cannot determine compiler PIC flags if shared libraries is turned off -# Either run using --with-shared-libraries or --with-pic=0 and supply the -# compiler PIC flag via CFLAGS, CXXXFLAGS, and FCFLAGS -# -# - Added -fallow-argument-mismatch option to FFLAGS in order to clear "Error: -# Rank mismatch between actual argument at [...]" -# - Added -fallow-invalid-boz option to FFLAGS in order to clear "Error: BOZ -# literal constant at [...]" -# - Argument to --with-mpi-include must be a list or it gets expanded -# incorrectly -# -cd ${PETSC_DIR} -./config/configure.py \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --PETSC_ARCH="${PETSC_ARCH}" \ - --CFLAGS="-fPIC -Wl,-static -Wno-error=implicit-function-declaration" \ - --CXXFLAGS="-fPIC -Wl,-static" \ - --FFLAGS="-fPIC -Wl,-static -fallow-argument-mismatch -fallow-invalid-boz" \ - --with-shared-libraries=0 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-proc-filesystem=0 \ - --with-mpiexec="${MPIEXEC_DIR}/mpiexec.exe" \ - --with-mpi-lib="-L${MSMPI_ROOT}/lib -lmsmpi" \ - --with-mpi-include="${MSMPI_ROOT}/include" \ - --download-fblaslapack=1 \ - --download-metis=1 \ - --download-metis-cmake-arguments="${MAKEFILE_GENERATOR}" \ - --download-parmetis=1 \ - --download-parmetis-cmake-arguments="${MAKEFILE_GENERATOR}" \ - --download-scalapack=1 \ - --download-scalapack-cmake-arguments="${MAKEFILE_GENERATOR}" \ - --download-mumps=1 - -# Compile and install -make PETSC_DIR="${PETSC_DIR}" PETSC_ARCH="${PETSC_ARCH}" all -make PETSC_DIR="${PETSC_DIR}" PETSC_ARCH="${PETSC_ARCH}" install Index: sm/trunk/externalpackages/petsc/install-3.14-win-msys2-mingw-msmpi.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.14-win-msys2-mingw-msmpi.sh (revision 28275) +++ (revision ) @@ -1,88 +1,0 @@ -#!/bin/bash -set -u # NOTE: Do not set -e as it will cause this script to fail when there are errors in underlying Python scripts - -# NOTE: -# - You must install various needed packages with, -# -# pacman -S mingw-w64-x86_64-toolchain python -# -# - You must use MSYS2 MinGW 64-bit version of cmake to be able to install -# external packages correctly, -# -# pacman -R mingw-w64-x86_64-cmake -# -# Sources: -# - https://gitlab.com/petsc/petsc/-/issues/820#note_487483240 -# - -## Constants -# -VER="3.14.6" - -MAKEFILE_GENERATOR='-G "MSYS Makefiles"' -PETSC_ARCH="arch-mswin-c-opt" -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Patch source -sed -i -e 's|#!/usr/bin/env python|#!/usr/bin/python3|' ${PETSC_DIR}/config/configure.py -sed -i 's| chkusingwindowspython()|# chkusingwindowspython()|' ${PETSC_DIR}/config/configure.py -sed -i 's|(MAKEFLAGS)|(MAKEFLAGS:w=)|' ${PETSC_DIR}/makefile ${PETSC_DIR}/lib/petsc/conf/rules # Fix for issue with GNUMake 4.4.1 (https://gitlab.com/petsc/petsc/-/merge_requests/6140) - -# Configure -# - Cannot use --with-fpic option when compiling static libs, -# -# Cannot determine compiler PIC flags if shared libraries is turned off -# Either run using --with-shared-libraries or --with-pic=0 and supply the -# compiler PIC flag via CFLAGS, CXXXFLAGS, and FCFLAGS -# -# - Added -fallow-argument-mismatch option to FFLAGS in order to clear "Error: -# Rank mismatch between actual argument at [...]" -# - Added -fallow-invalid-boz option to FFLAGS in order to clear "Error: BOZ -# literal constant at [...]" -# - Argument to --with-mpi-include must be a list or it gets expanded -# incorrectly -# -cd ${PETSC_DIR} -./config/configure.py \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --PETSC_ARCH="${PETSC_ARCH}" \ - --CFLAGS="-fPIC -Wno-error=implicit-function-declaration" \ - --CXXFLAGS="-fPIC" \ - --FFLAGS="-fPIC -fallow-argument-mismatch -fallow-invalid-boz" \ - --with-shared-libraries=0 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-proc-filesystem=0 \ - --with-mpiexec="${MPIEXEC_DIR}/mpiexec.exe" \ - --with-mpi-lib="-L${MSMPI_ROOT}/lib -lmsmpi" \ - --with-mpi-include="${MSMPI_ROOT}/include" \ - --download-fblaslapack=1 \ - --download-metis=1 \ - --download-metis-cmake-arguments="${MAKEFILE_GENERATOR}" \ - --download-parmetis=1 \ - --download-parmetis-cmake-arguments="${MAKEFILE_GENERATOR}" \ - --download-scalapack=1 \ - --download-scalapack-cmake-arguments="${MAKEFILE_GENERATOR}" \ - --download-mumps=1 - -# Compile and install -make PETSC_DIR="${PETSC_DIR}" PETSC_ARCH="${PETSC_ARCH}" all -make PETSC_DIR="${PETSC_DIR}" PETSC_ARCH="${PETSC_ARCH}" install Index: sm/trunk/externalpackages/petsc/install-3.15-babylon.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.15-babylon.sh (revision 28275) +++ (revision ) @@ -1,47 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.15.3" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./config/configure.py \ - --with-cc=icc --with-cxx=icpc --with-fc=ifort \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.15-discovery.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.15-discovery.sh (revision 28275) +++ (revision ) @@ -1,50 +1,0 @@ -#!/bin/bash -set -eu - -## Constants -# -VER="3.15.3" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./config/configure.py \ - COPTFLAGS="-g -O3" CXXOPTFLAGS="-g -O3" FOPTFLAGS="-g -O3" \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-make-np=20 \ - --with-blas-lapack-dir=$MKL_ROOT \ - --with-mpi-dir="/optnfs/el7/mpich/3.3-intel19.3/" \ - --known-mpi-shared-libraries=1 \ - --known-mpi-long-double=1 \ - --known-mpi-int64_t=1 \ - --known-mpi-c-double-complex=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.15-pleiades.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.15-pleiades.sh (revision 28275) +++ (revision ) @@ -1,54 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.15.0" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Based on /nasa/petsc/3.7.5/intel_mpt/lib/petsc/conf/petscvariables (look -# for CONFIGURE_OPTIONS) -# -cd ${PETSC_DIR} -./config/configure.py \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl" \ - --with-scalapack-include=/nasa/intel/Compiler/2018.3.222/mkl/include \ - --with-scalapack-lib="/nasa/intel/Compiler/2018.3.222/mkl/lib/intel64/libmkl_scalapack_lp64.so /nasa/intel/Compiler/2018.3.222/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" \ - --with-make-np=10 \ - --known-mpi-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=0 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.16-linux.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.16-linux.sh (revision 28275) +++ (revision ) @@ -1,52 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.16.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Added -Wno-error=implicit-function-declaration to CFLAGS for Clang >= 12. -# (may need to remove it for earlier versions not using the C99 standard). -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --CFLAGS="-Wno-error=implicit-function-declaration" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.16-mac.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.16-mac.sh (revision 28275) +++ (revision ) @@ -1,52 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.16.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Added -Wno-error=implicit-function-declaration to CFLAGS for Clang >= 12. -# (may need to remove it for earlier versions not using the C99 standard). -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --CFLAGS="-Wno-error=implicit-function-declaration" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.16-pleiades.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.16-pleiades.sh (revision 28275) +++ (revision ) @@ -1,55 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.16.6" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - - -# Configure -# -# NOTE: -# - Based on /nasa/petsc/3.7.5/intel_mpt/lib/petsc/conf/petscvariables (look -# for CONFIGURE_OPTIONS) -# -cd ${PETSC_DIR} -./config/configure.py \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl" \ - --with-scalapack-include=/nasa/intel/Compiler/2018.3.222/mkl/include \ - --with-scalapack-lib="/nasa/intel/Compiler/2018.3.222/mkl/lib/intel64/libmkl_scalapack_lp64.so /nasa/intel/Compiler/2018.3.222/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" \ - --with-make-np=10 \ - --known-mpi-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-batch=1 \ - --with-shared-libraries=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 \ - --download-scalapack=0 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.17-discovery.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.17-discovery.sh (revision 28275) +++ (revision ) @@ -1,50 +1,0 @@ -#!/bin/bash -set -eu - -## Constants -# -VER="3.17.4" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./config/configure.py \ - COPTFLAGS="-g -O3" CXXOPTFLAGS="-g -O3" FOPTFLAGS="-g -O3" \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-make-np=20 \ - --with-blas-lapack-dir=$MKL_ROOT \ - --with-mpi-dir="/optnfs/el7/mpich/3.3-intel19.3/" \ - --known-mpi-shared-libraries=1 \ - --known-mpi-long-double=1 \ - --known-mpi-int64_t=1 \ - --known-mpi-c-double-complex=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.17-linux-static.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.17-linux-static.sh (revision 28275) +++ (revision ) @@ -1,57 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.17.4" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Cannot use --with-fpic option when compiling static libs, -# -# Cannot determine compiler PIC flags if shared libraries is turned off -# Either run using --with-shared-libraries or --with-pic=0 and supply the -# compiler PIC flag via CFLAGS, CXXXFLAGS, and FCFLAGS -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-shared-libraries=0 \ - --CFLAGS="-fPIC" \ - --CXXFLAGS="-fPIC" \ - --FFLAGS="-fPIC" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.17-linux.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.17-linux.sh (revision 28275) +++ (revision ) @@ -1,44 +1,0 @@ -#!/bin/bash -set -eu - -## Constants -VER="3.17.4" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.17-mac-intel.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.17-mac-intel.sh (revision 28275) +++ (revision ) @@ -1,53 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.17.4" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Added -Wno-error=implicit-function-declaration to CFLAGS for Clang >= 12. -# (may need to remove it for earlier versions not using the C99 standard). -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --CFLAGS="-Wno-error=implicit-function-declaration" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install - Index: sm/trunk/externalpackages/petsc/install-3.17-mac-silicon-static.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.17-mac-silicon-static.sh (revision 28275) +++ (revision ) @@ -1,57 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.17.4" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Cannot use --with-fpic option when compiling static libs, -# -# Cannot determine compiler PIC flags if shared libraries is turned off -# Either run using --with-shared-libraries or --with-pic=0 and supply the -# compiler PIC flag via CFLAGS, CXXXFLAGS, and FCFLAGS -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-shared-libraries=0 \ - --CFLAGS="-fPIC" \ - --CXXFLAGS="-fPIC" \ - --FFLAGS="-fPIC" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.17-mac-silicon.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.17-mac-silicon.sh (revision 28275) +++ (revision ) @@ -1,46 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.17.4" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-zlib=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.17-pleiades.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.17-pleiades.sh (revision 28275) +++ (revision ) @@ -1,58 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.17.4" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Options from, -# -# cat /nasa/petsc/3.14.5_toss3/lib/petsc/conf/petscvariables | grep CONF -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-blas-lapack-dir="/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl" \ - --with-scalapack-include="/nasa/intel/Compiler/2018.3.222/mkl/include" \ - --with-scalapack-lib="/nasa/intel/Compiler/2018.3.222/mkl/lib/intel64/libmkl_scalapack_lp64.so /nasa/intel/Compiler/2018.3.222/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" \ - --CFLAGS="-g -O3" \ - --CXXFLAGS="-g -O3" \ - --FFLAGS="-g -O3" \ - --with-make-np=10 \ - --with-batch=1 \ - --with-pic=1 \ - --with-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-make=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.19-discovery.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.19-discovery.sh (revision 28275) +++ (revision ) @@ -1,50 +1,0 @@ -#!/bin/bash -set -eu - -## Constants -# -VER="3.19.1" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -cd ${PETSC_DIR} -./config/configure.py \ - COPTFLAGS="-g -O3" CXXOPTFLAGS="-g -O3" FOPTFLAGS="-g -O3" \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --with-make-np=20 \ - --with-blas-lapack-dir=$MKL_ROOT \ - --with-mpi-dir="/optnfs/el7/mpich/3.3-intel19.3/" \ - --known-mpi-shared-libraries=1 \ - --known-mpi-long-double=1 \ - --known-mpi-int64_t=1 \ - --known-mpi-c-double-complex=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 - -# Compile and install -make -make install Index: sm/trunk/externalpackages/petsc/install-3.19-mac-intel.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.19-mac-intel.sh (revision 28275) +++ (revision ) @@ -1,54 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.19.5" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Added -Wno-error=implicit-function-declaration to CFLAGS for Clang >= 12. -# (may need to remove it for earlier versions not using the C99 standard). -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --CFLAGS="-Wno-error=implicit-function-declaration" \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --with-pic=1 \ - --download-fblaslapack=1 \ - --download-mpich=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-scalapack=1 \ - --download-mumps=1 \ - --download-cmake=1 \ - --download-zlib=1 - -# Compile and install -make -make install - Index: sm/trunk/externalpackages/petsc/install-3.20-pleiades.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install-3.20-pleiades.sh (revision 28275) +++ (revision ) @@ -1,56 +1,0 @@ -#!/bin/bash -set -eu - - -## Constants -# -VER="3.20.1" - -PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" # DO NOT CHANGE THIS -PREFIX="${ISSM_DIR}/externalpackages/petsc/install" # Set to location where external package should be installed - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-${VER}.tar.gz" "petsc-${VER}.tar.gz" - -# Unpack source -tar -zxvf petsc-${VER}.tar.gz - -# Cleanup -rm -rf ${PREFIX} ${PETSC_DIR} -mkdir -p ${PETSC_DIR} - -# Move source to $PETSC_DIR -mv petsc-${VER}/* ${PETSC_DIR} -rm -rf petsc-${VER} - -# Configure -# -# NOTE: -# - Options from, -# -# cat /nasa/petsc/3.14.5_toss3/lib/petsc/conf/petscvariables | grep CONF -# -cd ${PETSC_DIR} -./configure \ - --prefix="${PREFIX}" \ - --PETSC_DIR="${PETSC_DIR}" \ - --CFLAGS="-g -O3" \ - --CXXFLAGS="-g -O3" \ - --FFLAGS="-g -O3" \ - --with-make-np=10 \ - --with-batch=1 \ - --with-pic=1 \ - --with-shared-libraries=1 \ - --with-debugging=0 \ - --with-valgrind=0 \ - --with-x=0 \ - --with-ssl=0 \ - --download-fblaslapack=1 \ - --download-scalapack=1 \ - --download-metis=1 \ - --download-parmetis=1 \ - --download-mumps=1 - -# Compile and install -make -make install Index: /issm/trunk/externalpackages/petsc/install.sh =================================================================== --- /issm/trunk/externalpackages/petsc/install.sh (revision 1) +++ /issm/trunk/externalpackages/petsc/install.sh (revision 1) @@ -0,0 +1,31 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of petsc +version=`echo *.tar.gz | sed 's/\.tar\.gz//g' | sed 's/petsc-//g'` + +#Some cleanup +rm -rf install petsc-$version + +#Create install directories +mkdir install + +#Untar +tar -zxvf petsc-$version.tar.gz + +#Move petsc to install directory +rm -rf install/* +mv petsc-$version/* install/ +rm -rf petsc-$version + +#Configure petsc +cd install +./config/configure.py --prefix="$ISSM_DIR/packages/petsc/install" --with-mpi-dir=$ISSM_DIR/packages/mpich2/install --PETSC_ARCH=linux-gnu-amd64 --PETSC_DIR="$ISSM_DIR/packages/petsc/install" --with-fc=gfortran --with-debugging=0 --with-shared=1 --download-mumps=yes --download-scalapack=yes --download-blacs=yes --download-blas=yes --download-f-blas-lapack=yes --FFLAGS=-I$ISSM_DIR/packages/mpich2/install/include --download-plapack=yes + +#Compile petsc +make -j $NUMCPUS + +#Install +make install Index: /issm/trunk/externalpackages/qhull/install.sh =================================================================== --- /issm/trunk/externalpackages/qhull/install.sh (revision 28275) +++ /issm/trunk/externalpackages/qhull/install.sh (revision 1) @@ -1,23 +1,32 @@ #!/bin/bash -set -eu + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of qhull +version=`echo *.tar.gz | sed 's/\.tar\.gz//g' | sed 's/qhull-//g'` #Some cleanup -rm -rf src install qhull-2003.1 +rm -rf src install qhull-$version + +#Create src and install directories mkdir src install -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/qhull-2003.1.tar.gz' 'qhull-2003.1.tar.gz' - #Untar -tar -zxvf qhull-2003.1.tar.gz +tar -zxvf qhull-$version.tar.gz #Move qhull to src directory rm -rf src/* -mv qhull-2003.1/* src/ -rm -rf qhull-2003.1 +mv qhull-$version/* src/ +rm -rf qhull-$version #Configure qhull cd src -./configure --prefix="$ISSM_DIR/externalpackages/qhull/install" -make -make install + +./configure --prefix="$ISSM_DIR/packages/qhull/install" + +#Compile qhull +make -j $NUMCPUS + +#Install qhull +make install Index: /issm/trunk/externalpackages/slepc/install.sh =================================================================== --- /issm/trunk/externalpackages/slepc/install.sh (revision 1) +++ /issm/trunk/externalpackages/slepc/install.sh (revision 1) @@ -0,0 +1,25 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of slepc +version=`echo *.tgz | sed 's/\.tgz//g' | sed 's/slepc-//g'` + +#Some cleanup +rm -rf install slepc-$version + +#Create install directories +mkdir install + +#Untar +tar -zxvf slepc-$version.tgz + +#Move slepc to install directory +mv slepc-$version/* install/ +rm -rf slepc-$version + +#Make slepc +cd install +./config/configure.py +make -j $NUMCPUS Index: /issm/trunk/externalpackages/sowing/install.sh =================================================================== --- /issm/trunk/externalpackages/sowing/install.sh (revision 1) +++ /issm/trunk/externalpackages/sowing/install.sh (revision 1) @@ -0,0 +1,30 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +version=1.1.12 + +#Some cleanup +rm -rf src +rm -rf install +rm -rf sowing-$version + +#Create src and install directories +mkdir src install + +#Untar +tar -zxvf sowing.tar.gz + +#Move sowing into src directory +mv sowing-$version/* src +rm -rf sowing-$version + +#Configure sowing +cd src && ./configure --prefix "$ISSM_DIR/packages/sowing/install" + +#Compile sowing +make -j $NUMCPUS + +#Install sowing +make install Index: /issm/trunk/externalpackages/suitesparse/SuiteSparse_install.patch =================================================================== --- /issm/trunk/externalpackages/suitesparse/SuiteSparse_install.patch (revision 1) +++ /issm/trunk/externalpackages/suitesparse/SuiteSparse_install.patch (revision 1) @@ -0,0 +1,375 @@ +1,2c1,4 +< function SuiteSparse_install (do_demo) +< %SuiteSparse_install: compiles and installs all of SuiteSparse +--- +> function SuiteSparse_install_ice (do_demo) +> %SuiteSparse_install_ice: adaptation of SuiteSparse_install to the ICE code. +> % we only install CHOLMOD, and don't do the demo. +> % compiles and installs all of SuiteSparse +26d27 +< % SuiteSparseQR sparse QR factorization +42c43 +< % SuiteSparse, SPQR, PATHTOOL, PATH. +--- +> % SuiteSparse, PATHTOOL, PATH. +44c45 +< % Copyright 1990-2008, Timothy A. Davis. +--- +> % Copyright 1990-2007, Timothy A. Davis. +65,66c66,67 +< fprintf ('SPQR, CHOLMOD, and KLU optionally use METIS 4.0.1. Download\n') ; +< fprintf ('it from http://glaros.dtc.umn.edu/gkhome/views/metis\n'); +--- +> fprintf ('CHOLMOD and KLU optionally use METIS 4.0.1. Download it\n') ; +> fprintf ('from http://glaros.dtc.umn.edu/gkhome/views/metis\n'); +68d68 +< input ('or hit enter to continue without METIS: ', 's') ; +82,93c82,93 +< try +< cd ([SuiteSparse '/UMFPACK/MATLAB']) ; +< paths = add_to_path (paths, pwd) ; +< umfpack_make +< catch %#ok +< try +< fprintf ('Trying to install with lcc_lib/libmwlapack.lib instead\n') ; +< umfpack_make ('lcc_lib/libmwlapack.lib') ; +< catch %#ok +< fprintf ('UMFPACK not installed\n') ; +< end +< end +--- +> %try +> % cd ([SuiteSparse '/UMFPACK/MATLAB']) ; +> % paths = add_to_path (paths, pwd) ; +> % umfpack_make +> %catch +> % try +> % fprintf ('Trying to install with lcc_lib/libmwlapack.lib instead\n') ; +> % umfpack_make ('lcc_lib/libmwlapack.lib') ; +> % catch +> % fprintf ('UMFPACK not installed\n') ; +> % end +> %end +105c105 +< catch %#ok +--- +> catch +109,267c109,242 +< % compile and install AMD +< try +< cd ([SuiteSparse '/AMD/MATLAB']) ; +< paths = add_to_path (paths, pwd) ; +< amd_make +< catch %#ok +< fprintf ('AMD not installed\n') ; +< end +< +< % compile and install COLAMD +< try +< cd ([SuiteSparse '/COLAMD/MATLAB']) ; +< paths = add_to_path (paths, pwd) ; +< colamd_make +< catch %#ok +< fprintf ('COLAMD not installed\n') ; +< end +< +< % compile and install CCOLAMD +< try +< cd ([SuiteSparse '/CCOLAMD/MATLAB']) ; +< paths = add_to_path (paths, pwd) ; +< ccolamd_make +< catch %#ok +< fprintf ('CCOLAMD not installed\n') ; +< end +< +< % compile and install CAMD +< try +< cd ([SuiteSparse '/CAMD/MATLAB']) ; +< paths = add_to_path (paths, pwd) ; +< camd_make +< catch %#ok +< fprintf ('CAMD not installed\n') ; +< end +< +< % compile and install CXSparse and UFget +< try +< cd ([SuiteSparse '/CXSparse/MATLAB/CSparse']) ; +< paths = add_to_path (paths, [SuiteSparse '/CXSparse/MATLAB/CSparse']) ; +< paths = add_to_path (paths, [SuiteSparse '/CXSparse/MATLAB/Demo']) ; +< if (v >= 7.0) +< paths = add_to_path (paths, [SuiteSparse '/CXSparse/MATLAB/UFget']) ; +< fprintf ('UFget installed successfully\n') ; +< else +< fprintf ('UFget skipped; requires MATLAB 7.0 or later\n') ; +< end +< if (pc) +< % Windows does not support ANSI C99 complex, which CXSparse requires +< fprintf ('Compiling CXSparse without complex support\n') ; +< cs_make (1, 0) ; +< else +< cs_make (1) ; +< end +< catch %#ok +< fprintf ('CXSparse not installed\n') ; +< end +< +< % compile and install LDL +< try +< cd ([SuiteSparse '/LDL/MATLAB']) ; +< paths = add_to_path (paths, pwd) ; +< ldl_make +< catch %#ok +< fprintf ('LDL not installed\n') ; +< end +< +< % compile and install BTF +< try +< cd ([SuiteSparse '/BTF/MATLAB']) ; +< paths = add_to_path (paths, pwd) ; +< btf_make +< catch %#ok +< fprintf ('BTF not installed\n') ; +< end +< +< % compile and install KLU +< try +< cd ([SuiteSparse '/KLU/MATLAB']) ; +< paths = add_to_path (paths, pwd) ; +< klu_make (have_metis) ; +< catch %#ok +< fprintf ('KLU not installed\n') ; +< end +< +< % compile and install SSMULT +< try +< cd ([SuiteSparse '/SSMULT']) ; +< paths = add_to_path (paths, pwd) ; +< ssmult_make ; +< catch %#ok +< fprintf ('SSMULT not installed\n') ; +< end +< +< % compile and install UFcollection +< try +< % do not try to compile with large-file I/O for MATLAB 6.5 or earlier +< cd ([SuiteSparse '/UFcollection']) ; +< paths = add_to_path (paths, pwd) ; +< UFcollection_install (v < 7.0) ; +< catch %#ok +< fprintf ('UFcollection not installed\n') ; +< end +< +< % install LINFACTOR, MESHND, MATLAB_Tools/* +< try +< cd ([SuiteSparse '/MESHND']) ; +< paths = add_to_path (paths, pwd) ; +< if (v > 7.2) +< % LINFACTOR requires MATLAB 7.3 or later +< cd ([SuiteSparse '/LINFACTOR']) ; +< paths = add_to_path (paths, pwd) ; +< fprintf ('LINFACTOR installed\n') ; +< end +< cd ([SuiteSparse '/MATLAB_Tools/find_components']) ; +< paths = add_to_path (paths, pwd) ; +< cd ([SuiteSparse '/MATLAB_Tools/GEE']) ; +< paths = add_to_path (paths, pwd) ; +< cd ([SuiteSparse '/MATLAB_Tools/shellgui']) ; +< paths = add_to_path (paths, pwd) ; +< cd ([SuiteSparse '/MATLAB_Tools/waitmex']) ; +< paths = add_to_path (paths, pwd) ; +< cd ([SuiteSparse '/MATLAB_Tools/spok']) ; +< paths = add_to_path (paths, pwd) ; +< mex spok.c spok_mex.c +< fprintf ('LINFACTOR, MESHND, MATLAB_Tools installed\n') ; +< catch %#ok +< fprintf ('LINFACTOR, MESHND, and/or MATLAB_Tools not installed\n') ; +< end +< +< % compile and install SuiteSparseQR +< try +< if (pc) +< fprintf ('Note that SuiteSparseQR will not compile with the lcc\n') ; +< fprintf ('compiler provided with MATLAB on Windows\n') ; +< end +< cd ([SuiteSparse '/SPQR/MATLAB']) ; +< paths = add_to_path (paths, pwd) ; +< if (have_metis) +< spqr_make +< else +< spqr_make ('no metis') ; +< end +< catch %#ok +< disp (lasterr) ; %#ok +< fprintf ('SuiteSparseQR not installed\n') ; +< end +< +< % compile and install RBio (not on Windows ... no default Fortran compiler) +< if (~pc) +< try +< cd ([SuiteSparse '/RBio']) ; +< RBmake +< paths = add_to_path (paths, pwd) ; +< catch %#ok +< disp (lasterr) ; %#ok +< fprintf ('RBio not installed (Fortran compiler required).\n') ; +< end +< end +--- +> %% compile and install AMD +> %try +> % cd ([SuiteSparse '/AMD/MATLAB']) ; +> % paths = add_to_path (paths, pwd) ; +> % amd_make +> %catch +> % fprintf ('AMD not installed\n') ; +> %end +> % +> %% compile and install COLAMD +> %try +> % cd ([SuiteSparse '/COLAMD/MATLAB']) ; +> % paths = add_to_path (paths, pwd) ; +> % colamd_make +> %catch +> % fprintf ('COLAMD not installed\n') ; +> %end +> % +> %% compile and install CCOLAMD +> %try +> % cd ([SuiteSparse '/CCOLAMD/MATLAB']) ; +> % paths = add_to_path (paths, pwd) ; +> % ccolamd_make +> %catch +> % fprintf ('CCOLAMD not installed\n') ; +> %end +> % +> %% compile and install CAMD +> %try +> % cd ([SuiteSparse '/CAMD/MATLAB']) ; +> % paths = add_to_path (paths, pwd) ; +> % camd_make +> %catch +> % fprintf ('CAMD not installed\n') ; +> %end +> % +> %% compile and install CXSparse and UFget +> %try +> % cd ([SuiteSparse '/CXSparse/MATLAB/CSparse']) ; +> % paths = add_to_path (paths, [SuiteSparse '/CXSparse/MATLAB/CSparse']) ; +> % paths = add_to_path (paths, [SuiteSparse '/CXSparse/MATLAB/Demo']) ; +> % if (v >= 7.0) +> % paths = add_to_path (paths, [SuiteSparse '/CXSparse/MATLAB/UFget']) ; +> % fprintf ('UFget installed successfully\n') ; +> % else +> % fprintf ('UFget skipped; requires MATLAB 7.0 or later\n') ; +> % end +> % if (pc) +> % % Windows does not support ANSI C99 complex, which CXSparse requires +> % fprintf ('Compiling CXSparse without complex support\n') ; +> % cs_make (1, 0) ; +> % else +> % cs_make (1) ; +> % end +> %catch +> % fprintf ('CXSparse not installed\n') ; +> %end +> % +> %% compile and install LDL +> %try +> % cd ([SuiteSparse '/LDL/MATLAB']) ; +> % paths = add_to_path (paths, pwd) ; +> % ldl_make +> %catch +> % fprintf ('LDL not installed\n') ; +> %end +> % +> %% compile and install BTF +> %try +> % cd ([SuiteSparse '/BTF/MATLAB']) ; +> % paths = add_to_path (paths, pwd) ; +> % btf_make +> %catch +> % fprintf ('BTF not installed\n') ; +> %end +> % +> %% compile and install KLU +> %try +> % cd ([SuiteSparse '/KLU/MATLAB']) ; +> % paths = add_to_path (paths, pwd) ; +> % klu_make (have_metis) ; +> %catch +> % fprintf ('KLU not installed\n') ; +> %end +> % +> %% compile and install SSMULT +> %try +> % cd ([SuiteSparse '/SSMULT']) ; +> % paths = add_to_path (paths, pwd) ; +> % ssmult_install (0) ; +> %catch +> % fprintf ('SSMULT not installed\n') ; +> %end +> % +> %% compile and install UFcollection +> %try +> % % do not try to compile with large-file I/O for MATLAB 6.5 or earlier +> % cd ([SuiteSparse '/UFcollection']) ; +> % paths = add_to_path (paths, pwd) ; +> % UFcollection_install (v < 7.0) ; +> %catch +> % fprintf ('UFcollection not installed\n') ; +> %end +> % +> %% install LINFACTOR, MESHND, MATLAB_Tools/* +> %try +> % cd ([SuiteSparse '/MESHND']) ; +> % paths = add_to_path (paths, pwd) ; +> % if (v > 7.2) +> % % LINFACTOR requires MATLAB 7.3 or later +> % cd ([SuiteSparse '/LINFACTOR']) ; +> % paths = add_to_path (paths, pwd) ; +> % fprintf ('LINFACTOR installed\n') ; +> % end +> % cd ([SuiteSparse '/MATLAB_Tools/shellgui']) ; +> % paths = add_to_path (paths, pwd) ; +> % cd ([SuiteSparse '/MATLAB_Tools/waitmex']) ; +> % paths = add_to_path (paths, pwd) ; +> % fprintf ('MESHND, MATLAB_Tools installed\n') ; +> %catch +> % fprintf ('LINFACTOR, MESHND, or MATLAB_Tools not installed\n') ; +> %end +> % +> %% compile and install RBio (not on Windows ... no default Fortran compiler) +> %if (~pc) +> % try +> % cd ([SuiteSparse '/RBio']) ; +> % RBmake +> % paths = add_to_path (paths, pwd) ; +> % catch +> % disp (lasterr) +> % fprintf ('RBio not installed (Fortran compiler required).\n') ; +> % end +> %end +274,281c249,258 +< if (nargin < 1) +< % ask if demo should be run +< y = input ('Hit enter to run the SuiteSparse demo (or "n" to quit): ', 's') ; +< if (isempty (y)) +< y = 'y' ; +< end +< do_demo = (y (1) ~= 'n') ; +< end +--- +> %if (nargin < 1) +> % % ask if demo should be run +> % y = input ('Hit enter to run the SuiteSparse demo (or "n" to quit): ', 's') ; +> % if (isempty (y)) +> % y = 'y' ; +> % end +> % do_demo = (y (1) ~= 'n') ; +> %end +> +> do_demo=0; %we never run the demo in this adaptation to the ICE code. +285c262 +< catch %#ok +--- +> catch Index: /issm/trunk/externalpackages/suitesparse/install.sh =================================================================== --- /issm/trunk/externalpackages/suitesparse/install.sh (revision 1) +++ /issm/trunk/externalpackages/suitesparse/install.sh (revision 1) @@ -0,0 +1,33 @@ +#!/bin/bash + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of SuiteSparse +version=`echo *.tar.gz | sed 's/\.tar\.gz//g' | sed 's/SuiteSparse-//g'` + +#Some cleanup +rm -rf install SuiteSparse-$version + +#Create install directories +mkdir install + +#Untar +tar -zxvf SuiteSparse-$version.tar.gz + +#Move SuiteSparse into install directory +mv SuiteSparse/* install +rm -rf SuiteSparse + +#Apply patch +cd install +cp SuiteSparse_install.m SuiteSparse_install_ice.m +patch SuiteSparse_install_ice.m ../SuiteSparse_install.patch + +#Symlink metis-4.0 to where it is. +ln -s ../../metis/install/ metis-4.0 + +#Now compile using matlab +matlab << EOF +SuiteSparse_install_ice +EOF Index: sm/trunk/externalpackages/triangle/install-altix64.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-altix64.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install triangle -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/triangle.zip' 'triangle.zip' - -#Untar -cd install -cp ../triangle.zip ./ -unzip triangle.zip - -#copy new makefile -cp ../configs/altix64/configure.make ./ -cp ../makefile ./ - -#Compile triangle -make - -#Patch triangle.h -patch triangle.h ../triangle.h.patch Index: sm/trunk/externalpackages/triangle/install-android.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-android.sh (revision 28275) +++ (revision ) @@ -1,26 +1,0 @@ -#!/bin/bash -set -eu - -source $ANDROID_DIR/android_aux.sh - -#Some cleanup -rm -rf install triangle -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/triangle.zip' 'triangle.zip' - -#Untar -cd install -cp ../triangle.zip ./ -unzip triangle.zip - -#copy new makefile -cp ../configs/android/configure.make ./ -cp ../makefile ./ - -#Compile triangle -make - -#Patch triangle.h -patch triangle.h ../triangle.h.patch Index: sm/trunk/externalpackages/triangle/install-discover.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-discover.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -export PREFIX="${ISSM_DIR}/externalpackages/triangle/install" # Set to location where external package should be installed - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} ${PREFIX}/include ${PREFIX}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/linux/configure.make src - -# Compile -cd src -make shared - -# Install -cd .. -cp src/libtriangle.* ${PREFIX}/lib -cp src/triangle.h ${PREFIX}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-iosarmv7.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-iosarmv7.sh (revision 28275) +++ (revision ) @@ -1,27 +1,0 @@ -#!/bin/bash -set -eu - -host_triplet="armv7-apple-darwin14.0.0" - -#cleanup -rm -rf install triangle -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/triangle.zip' 'triangle.zip' - -#untar -cd install -cp ../triangle.zip ./ -unzip triangle.zip -rm triangle.zip - -#copy new makefile -cp ../configs/ios/configure.make ./ -cp ../makefile ./ - -#compile triangle -make - -#patch triangle.h -patch triangle.h ../triangle.h.patch Index: sm/trunk/externalpackages/triangle/install-iosarmv7s.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-iosarmv7s.sh (revision 28275) +++ (revision ) @@ -1,27 +1,0 @@ -#!/bin/bash -set -eu - -host_triplet="armv7s-apple-darwin14.0.0" - -#cleanup -rm -rf install triangle -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/triangle.zip' 'triangle.zip' - -#untar -cd install -cp ../triangle.zip ./ -unzip triangle.zip -rm triangle.zip - -#copy new makefile -cp ../configs/ios/configure.make ./ -cp ../makefile ./ - -#compile triangle -make - -#patch triangle.h -patch triangle.h ../triangle.h.patch Index: sm/trunk/externalpackages/triangle/install-iosi386.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-iosi386.sh (revision 28275) +++ (revision ) @@ -1,27 +1,0 @@ -#!/bin/bash -set -eu - -host_triplet="i386-apple-darwin13.1.0" - -#cleanup -rm -rf install triangle -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/triangle.zip' 'triangle.zip' - -#untar -cd install -cp ../triangle.zip ./ -unzip triangle.zip -rm triangle.zip - -#copy new makefile -cp ../configs/ios/configure.make ./ -cp ../makefile ./ - -#compile triangle -make - -#patch triangle.h -patch triangle.h ../triangle.h.patch Index: sm/trunk/externalpackages/triangle/install-linux-javascript.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-linux-javascript.sh (revision 28275) +++ (revision ) @@ -1,42 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -export PREFIX="${ISSM_DIR}/externalpackages/triangle/install" # Set to location where external package should be installed - -# Environment -# -export CC=emcc -export CXX=em++ -export AR=emar -export RANLIB=emranlib -#export EMCC_DEBUG=1 # Uncomment to enable debugging - -# Source Emscripten environment -source ${EMSCRIPTEN_ROOT}/emsdk_env.sh - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} ${PREFIX}/include ${PREFIX}/share src - -# Download source -${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/javascript/configure.make src -cp configs/javascript/triangle.h src - -# Compile -cd src -make objects - -# Install -cd .. -cp src/triangle.o ${PREFIX}/share -cp src/triangle.h ${PREFIX}/include Index: sm/trunk/externalpackages/triangle/install-linux-static.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-linux-static.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -export PREFIX="${ISSM_DIR}/externalpackages/triangle/install" # Set to location where external package should be installed - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} ${PREFIX}/include ${PREFIX}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/linux/configure.make src - -# Compile -cd src -make static - -# Install -cd .. -cp src/libtriangle.* ${PREFIX}/lib -cp src/triangle.h ${PREFIX}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-linux.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-linux.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -export PREFIX="${ISSM_DIR}/externalpackages/triangle/install" # Set to location where external package should be installed - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} ${PREFIX}/include ${PREFIX}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/linux/configure.make src - -# Compile -cd src -make shared - -# Install -cd .. -cp src/libtriangle.* ${PREFIX}/lib -cp src/triangle.h ${PREFIX}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-mac-static.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-mac-static.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -export PREFIX="${ISSM_DIR}/externalpackages/triangle/install" # Set to location where external package should be installed - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} ${PREFIX}/include ${PREFIX}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/mac/configure.make src - -# Compile -cd src -make static - -# Install -cd .. -cp src/libtriangle.* ${PREFIX}/lib -cp src/triangle.h ${PREFIX}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-mac.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-mac.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -export PREFIX="${ISSM_DIR}/externalpackages/triangle/install" # Set to location where external package should be installed - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} ${PREFIX}/include ${PREFIX}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/mac/configure.make src - -# Compile -cd src -make shared - -# Install -cd .. -cp src/libtriangle.* ${PREFIX}/lib -cp src/triangle.h ${PREFIX}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-pleiades.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-pleiades.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -INSTALL_DIR="install" - -# Cleanup -rm -rf ${INSTALL_DIR} src -mkdir ${INSTALL_DIR} ${INSTALL_DIR}/include ${INSTALL_DIR}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/linux/configure.make src - -# Compile -cd src -make shared - -# Install -cd .. -cp src/libtriangle.* ${INSTALL_DIR}/lib -cp src/triangle.h ${INSTALL_DIR}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-win-msys2-gcc.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-win-msys2-gcc.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -export PREFIX="${ISSM_DIR}/externalpackages/triangle/install" # Set to location where external package should be installed - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} ${PREFIX}/include ${PREFIX}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/win/msys2/gcc/configure.make src - -# Compile -cd src -make shared - -# Install -cd .. -cp src/libtriangle.* ${PREFIX}/lib -cp src/triangle.h ${PREFIX}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-win-msys2-mingw-static.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-win-msys2-mingw-static.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -export PREFIX="${ISSM_DIR}/externalpackages/triangle/install" # Set to location where external package should be installed - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} ${PREFIX}/include ${PREFIX}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/win/msys2/mingw64/configure.make src - -# Compile -cd src -make static - -# Install -cd .. -cp src/libtriangle.* ${PREFIX}/lib -cp src/triangle.h ${PREFIX}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-win-msys2-mingw.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-win-msys2-mingw.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -export PREFIX="${ISSM_DIR}/externalpackages/triangle/install" # Set to location where external package should be installed - -# Cleanup -rm -rf ${PREFIX} src -mkdir -p ${PREFIX} ${PREFIX}/include ${PREFIX}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/win/msys2/mingw64/configure.make src - -# Compile -cd src -make shared - -# Install -cd .. -cp src/libtriangle.* ${PREFIX}/lib -cp src/triangle.h ${PREFIX}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-win10.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-win10.sh (revision 28275) +++ (revision ) @@ -1,25 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install triangle -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/triangle.zip' 'triangle.zip' - -#Untar -cd install -cp ../triangle.zip ./ -unzip triangle.zip - -#copy new makefile -cp ../configs/win7/configure.make ./ -cp ../configs/win7/makefile ./ - -#Compile triangle -make - -#Patch triangle.h -patch triangle.h ../triangle.h.patch -cat triangle.h Index: sm/trunk/externalpackages/triangle/install-win32.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-win32.sh (revision 28275) +++ (revision ) @@ -1,24 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf install triangle -mkdir install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/triangle.zip' 'triangle.zip' - -#Untar -cd install -cp ../triangle.zip ./ -unzip triangle.zip - -#copy new makefile -cp ../configs/win32/configure.make ./ -cp ../makefile ./ - -#Compile triangle -make - -#Patch triangle.h -patch triangle.h ../triangle.h.patch Index: sm/trunk/externalpackages/triangle/install-windows-static.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-windows-static.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -INSTALL_DIR="install" - -# Cleanup -rm -rf ${INSTALL_DIR} src -mkdir ${INSTALL_DIR} ${INSTALL_DIR}/include ${INSTALL_DIR}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/windows/configure.make src - -# Compile -cd src -make static - -# Install -cd .. -cp src/libtriangle.* ${INSTALL_DIR}/lib -cp src/triangle.h ${INSTALL_DIR}/include - -# Cleanup -rm -rf src Index: sm/trunk/externalpackages/triangle/install-windows.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install-windows.sh (revision 28275) +++ (revision ) @@ -1,34 +1,0 @@ -#!/bin/bash -set -eu - - -# Constants -# -INSTALL_DIR="install" - -# Cleanup -rm -rf ${INSTALL_DIR} src -mkdir ${INSTALL_DIR} ${INSTALL_DIR}/include ${INSTALL_DIR}/lib src - -# Download source -$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/triangle.zip" "triangle.zip" - -# Unpack source -unzip triangle.zip -d src - -# Copy customized source files to 'src' directory -cp configs/makefile src -cp configs/triangle.h src -cp configs/windows/configure.make src - -# Compile -cd src -make shared - -# Install -cd .. -cp src/libtriangle.* ${INSTALL_DIR}/lib -cp src/triangle.h ${INSTALL_DIR}/include - -# Cleanup -rm -rf src Index: /issm/trunk/externalpackages/triangle/install.sh =================================================================== --- /issm/trunk/externalpackages/triangle/install.sh (revision 28275) +++ /issm/trunk/externalpackages/triangle/install.sh (revision 1) @@ -1,32 +1,31 @@ #!/bin/bash -set -eu + +#Get number of cpus on current platform +NUMCPUS=`grep -c processor /proc/cpuinfo`; + +#version of triangle +name=`echo *.zip | sed 's/\.zip//g'` #Some cleanup -rm -rf install src triangle -mkdir install src ./src/m4 +rm -rf install $name -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/triangle.zip' 'triangle.zip' +#Create install directories +mkdir install #Untar -cd src -mkdir src -cp ../triangle.zip ./ -unzip triangle.zip +cd install +cp ../$name.zip ./ +unzip $name.zip -rm ./makefile -mv ./*.c ./src -mv ./*.h ./src +#copy new makefile +cp ../makefile ./ -cp ./../configs/libtool/configure.ac ./ -cp ./../configs/libtool/Makefile.am ./ -cp ./../configs/libtool/src/Makefile.am ./src/ +#Patch triangle.c +patch triangle.c ../triangle.c.patch -autoreconf -ivf -./configure --prefix="${HOME}/externalpackages/triangle/install" --disable-executables - -make -make install +#Compile triangle +make -j $NUMCPUS #Patch triangle.h -patch ${HOME}/externalpackages/triangle/install/include/triangle.h ${HOME}/externalpackages/triangle/triangle.h.patch +patch triangle.h ../triangle.h.patch + Index: /issm/trunk/externalpackages/triangle/makefile =================================================================== --- /issm/trunk/externalpackages/triangle/makefile (revision 28275) +++ /issm/trunk/externalpackages/triangle/makefile (revision 1) @@ -1,46 +1,20 @@ -include ./configure.make +#Adaptation of Triangle makefile to compile only the triangle.c file, +#into a standalone library that can then be used to compile mex modules -ifeq "$(origin CC)" "undefined" - CC = cc -endif +AR = ar +CSWITCHES = $(CFLAGS) -I/usr/X11R6/include -L/usr/X11R6/lib -I$(MATLAB_DIR)/extern/include -fPIC -I$(MATLAB_DIR)/include +TRILIBDEFS = -DTRILIBRARY -ifeq "$(origin AR)" "undefined" - AR = ar -endif +all: triangle.a -ifeq "$(origin RANLIB)" "undefined" - RANLIB = ranlib -endif +OBJECTS=triangle.o -SOURCES=triangle.c triangle.h -OBJECTS=triangle.$(OBJ_EXT) +triangle.a: $(OBJECTS) + ar cr triangle.a $(OBJECTS) + ranlib triangle.a -all: libtriangle.$(STATIC_LIB_EXT) libtriangle.$(SHARED_LIB_EXT) - -objects: $(OBJECTS) - -shared: libtriangle.$(SHARED_LIB_EXT) - -static: libtriangle.$(STATIC_LIB_EXT) - -triangle.$(OBJ_EXT): $(SOURCES) +triangle.o: triangle.c triangle.h $(CC) $(CSWITCHES) $(TRILIBDEFS) -c triangle.c -libtriangle.a: $(OBJECTS) - $(AR) cr $@ $(OBJECTS) - $(RANLIB) $@ - -libtriangle.dll: $(SOURCES) - $(CC) $(CSWITCHES) $(TRILIBDEFS) -shared -o $@ triangle.c - -libtriangle.dylib: $(OBJECTS) - $(CC) $(CSWITCHES) $(TRILIBDEFS) -dynamiclib -install_name ${PREFIX}/lib/$@ -o $@ triangle.c - -libtriangle.lib: $(OBJECTS) - lib -out:libtriangle.$(STATIC_LIB_EXT) $(OBJECTS) - -libtriangle.so: $(SOURCES) - $(CC) $(CSWITCHES) $(TRILIBDEFS) -shared -o $@ triangle.c - -clean: - rm -rf *.$(LIB_EXT) *.$(OBJ_EXT) *.LIB *.LST *.$(OBJ_EXT)bj *.BAK +clean: + rm -rf *.a *.o *.LIB *.LST *.obj *.BAK Index: /issm/trunk/externalpackages/triangle/triangle.c.patch =================================================================== --- /issm/trunk/externalpackages/triangle/triangle.c.patch (revision 1) +++ /issm/trunk/externalpackages/triangle/triangle.c.patch (revision 1) @@ -0,0 +1,164 @@ +0a1,10 +> /*Notes for the Ice code: +> * to be able to compile Triangle within a mex function that can run within +> * matlab, we had to change the allocation routine trimalloc, as well as the +> * double precision activation in exactinit(); The rest is not changed. +> * We also created the ice_makefile to compile Triangle into a library. */ +> #include +> #include +> #define ANSI_DECLARATORS +> #define NO_TIMER +> +347a358 +> #ifndef _WIN_ +348a360 +> #endif +641d652 +< +817a829,922 +> /*Some missing prototypes: */ +> int scale_expansion_zeroelim(int elen, REAL *e, REAL b, REAL *h); +> int fast_expansion_sum_zeroelim(int elen, REAL *e, int flen, REAL *f, REAL *h); +> void poolzero(struct memorypool *pool); +> int triunsuitable(vertex triorg, vertex tridest, vertex triapex, REAL area); +> triangle *triangletraverse(struct mesh *m); +> void pooldeinit(struct memorypool *pool); +> void printtriangle(struct mesh *m, struct behavior *b, struct otri *t); +> VOID *poolalloc(struct memorypool *pool); +> void enqueuebadtriang(struct mesh *m, struct behavior *b, +> struct badtriang *badtri); +> void triangulatepolygon(struct mesh *m, struct behavior *b, +> struct otri *firstedge, struct otri *lastedge, +> int edgecount, int doflip, int triflaws); +> void triangledealloc(struct mesh *m, triangle *dyingtriangle); +> void unflip(struct mesh *m, struct behavior *b, struct otri *flipedge); +> void vertexmedian(vertex *sortarray, int arraysize, int median, int axis); +> REAL counterclockwiseadapt(vertex pa, vertex pb, vertex pc, REAL detsum); +> REAL incircleadapt(vertex pa, vertex pb, vertex pc, vertex pd, REAL permanent); +> void enqueuebadtri(struct mesh *m, struct behavior *b, struct otri *enqtri, +> REAL minedge, vertex enqapex, vertex enqorg, vertex enqdest); +> void alternateaxes(vertex *sortarray, int arraysize, int axis); +> REAL incircleadapt(vertex pa, vertex pb, vertex pc, vertex pd, REAL permanent); +> void maketriangle(struct mesh *m, struct behavior *b, struct otri *newotri); +> REAL counterclockwise(struct mesh *m, struct behavior *b, +> vertex pa, vertex pb, vertex pc); +> vertex vertextraverse(struct mesh *m); +> void mergehulls(struct mesh *m, struct behavior *b, struct otri *farleft, +> struct otri *innerleft, struct otri *innerright, +> struct otri *farright, int axis); +> REAL incircle(struct mesh *m, struct behavior *b, +> vertex pa, vertex pb, vertex pc, vertex pd); +> void poolrestart(struct memorypool *pool); +> void trifree(VOID *memptr); +> struct splaynode *splay(struct mesh *m, struct splaynode *splaytree, +> vertex searchpoint, struct otri *searchtri); +> void eventheapdelete(struct event **heap, int heapsize, int eventnum); +> void eventheapdelete(struct event **heap, int heapsize, int eventnum); +> void flip(struct mesh *m, struct behavior *b, struct otri *flipedge); +> void check4deadevent(struct otri *checktri, struct event **freeevents, +> struct event **eventheap, int *heapsize); +> REAL orient3d(struct mesh *m, struct behavior *b, +> vertex pa, vertex pb, vertex pc, vertex pd, +> REAL aheight, REAL bheight, REAL cheight, REAL dheight); +> REAL circletop(struct mesh *m, vertex pa, vertex pb, vertex pc, REAL ccwabc); +> void poolinit(struct memorypool *pool, int bytecount, int itemcount, +> int firstitemcount, int alignment); +> void eventheapinsert(struct event **heap, int heapsize, struct event *newevent); +> int rightofhyperbola(struct mesh *m, struct otri *fronttri, vertex newsite); +> void insertsubseg(struct mesh *m, struct behavior *b, struct otri *tri, +> int subsegmark); +> int scoutsegment(struct mesh *m, struct behavior *b, struct otri *searchtri, +> vertex endpoint2, int newmark); +> vertex getvertex(struct mesh *m, struct behavior *b, int number); +> void internalerror(); +> unsigned long randomnation(unsigned int choices); +> struct splaynode *splayinsert(struct mesh *m, struct splaynode *splayroot, +> struct otri *newkey, vertex searchpoint); +> void delaunayfixup(struct mesh *m, struct behavior *b, +> struct otri *fixuptri, int leftside); +> void traversalinit(struct memorypool *pool); +> enum insertvertexresult insertvertex(struct mesh *m, struct behavior *b, +> vertex newvertex, struct otri *searchtri, +> struct osub *splitseg, +> int segmentflaws, int triflaws); +> void conformingedge(struct mesh *m, struct behavior *b, +> vertex endpoint1, vertex endpoint2, int newmark); +> enum finddirectionresult finddirection(struct mesh *m, struct behavior *b, +> struct otri *searchtri, +> vertex searchpoint); +> VOID *traverse(struct memorypool *pool); +> void deletevertex(struct mesh *m, struct behavior *b, struct otri *deltri); +> void pooldealloc(struct memorypool *pool, VOID *dyingitem); +> int checkseg4encroach(struct mesh *m, struct behavior *b, +> struct osub *testsubseg); +> void badsubsegdealloc(struct mesh *m, struct badsubseg *dyingseg); +> void vertexdealloc(struct mesh *m, vertex dyingvertex); +> void vertexsort(vertex *sortarray, int arraysize); +> void tallyencs(struct mesh *m, struct behavior *b); +> void splittriangle(struct mesh *m, struct behavior *b, +> struct badtriang *badtri); +> subseg *subsegtraverse(struct mesh *m); +> enum locateresult locate(struct mesh *m, struct behavior *b, +> vertex searchpoint, struct otri *searchtri); +> void writenodes(struct mesh *m, struct behavior *b, REAL **pointlist, +> REAL **pointattriblist, int **pointmarkerlist); +> void writevoronoi(struct mesh *m, struct behavior *b, REAL **vpointlist, +> REAL **vpointattriblist, int **vpointmarkerlist, +> int **vedgelist, int **vedgemarkerlist, REAL **vnormlist); +> void writeneighbors(struct mesh *m, struct behavior *b, int **neighborlist); +> void testtriangle(struct mesh *m, struct behavior *b, struct otri *testtri); +> void triangleinit(struct mesh *m); +> +> +1408a1514 +> void triexit(int status); +1410d1515 +< #ifdef ANSI_DECLARATORS +1412,1416d1516 +< #else /* not ANSI_DECLARATORS */ +< void triexit(status) +< int status; +< #endif /* not ANSI_DECLARATORS */ +< +1421c1521 +< #ifdef ANSI_DECLARATORS +--- +> VOID *trimalloc(int size); +1423,1427d1522 +< #else /* not ANSI_DECLARATORS */ +< VOID *trimalloc(size) +< int size; +< #endif /* not ANSI_DECLARATORS */ +< +1431c1526,1527 +< memptr = (VOID *) malloc((unsigned int) size); +--- +> memptr = (VOID *) mxMalloc((unsigned int) size); +> //memptr = (VOID *) malloc((unsigned int) size); +1447c1543,1544 +< free(memptr); +--- +> //free(memptr); +> mxFree(memptr); +3665,3670c3762,3767 +< void printtriangle(struct mesh *m, struct behavior *b, struct otri *t) +< #else /* not ANSI_DECLARATORS */ +< void printtriangle(m, b, t) +< struct mesh *m; +< struct behavior *b; +< struct otri *t; +--- +> void printtriangle(struct mesh *m, struct behavior *b, struct otri *t){ +> //#else /* not ANSI_DECLARATORS */ +> //void printtriangle(m, b, t) +> //struct mesh *m; +> //struct behavior *b; +> //struct otri *t; +3673c3770 +< { +--- +> //{ +4910c5007 +< _FPU_SETCW(cword); +--- +> //_FPU_SETCW(cword); //taken care of by Matlab Index: /issm/trunk/externalpackages/triangle/triangle.h =================================================================== --- /issm/trunk/externalpackages/triangle/triangle.h (revision 1) +++ /issm/trunk/externalpackages/triangle/triangle.h (revision 1) @@ -0,0 +1,291 @@ +/*****************************************************************************/ +/* */ +/* (triangle.h) */ +/* */ +/* Include file for programs that call Triangle. */ +/* */ +/* Accompanies Triangle Version 1.6 */ +/* July 28, 2005 */ +/* */ +/* Copyright 1996, 2005 */ +/* Jonathan Richard Shewchuk */ +/* 2360 Woolsey #H */ +/* Berkeley, California 94705-1927 */ +/* jrs@cs.berkeley.edu */ +/* */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* */ +/* How to call Triangle from another program */ +/* */ +/* */ +/* If you haven't read Triangle's instructions (run "triangle -h" to read */ +/* them), you won't understand what follows. */ +/* */ +/* Triangle must be compiled into an object file (triangle.o) with the */ +/* TRILIBRARY symbol defined (generally by using the -DTRILIBRARY compiler */ +/* switch). The makefile included with Triangle will do this for you if */ +/* you run "make trilibrary". The resulting object file can be called via */ +/* the procedure triangulate(). */ +/* */ +/* If the size of the object file is important to you, you may wish to */ +/* generate a reduced version of triangle.o. The REDUCED symbol gets rid */ +/* of all features that are primarily of research interest. Specifically, */ +/* the -DREDUCED switch eliminates Triangle's -i, -F, -s, and -C switches. */ +/* The CDT_ONLY symbol gets rid of all meshing algorithms above and beyond */ +/* constrained Delaunay triangulation. Specifically, the -DCDT_ONLY switch */ +/* eliminates Triangle's -r, -q, -a, -u, -D, -Y, -S, and -s switches. */ +/* */ +/* IMPORTANT: These definitions (TRILIBRARY, REDUCED, CDT_ONLY) must be */ +/* made in the makefile or in triangle.c itself. Putting these definitions */ +/* in this file (triangle.h) will not create the desired effect. */ +/* */ +/* */ +/* The calling convention for triangulate() follows. */ +/* */ +/* void triangulate(triswitches, in, out, vorout) */ +/* char *triswitches; */ +/* struct triangulateio *in; */ +/* struct triangulateio *out; */ +/* struct triangulateio *vorout; */ +/* */ +/* `triswitches' is a string containing the command line switches you wish */ +/* to invoke. No initial dash is required. Some suggestions: */ +/* */ +/* - You'll probably find it convenient to use the `z' switch so that */ +/* points (and other items) are numbered from zero. This simplifies */ +/* indexing, because the first item of any type always starts at index */ +/* [0] of the corresponding array, whether that item's number is zero or */ +/* one. */ +/* - You'll probably want to use the `Q' (quiet) switch in your final code, */ +/* but you can take advantage of Triangle's printed output (including the */ +/* `V' switch) while debugging. */ +/* - If you are not using the `q', `a', `u', `D', `j', or `s' switches, */ +/* then the output points will be identical to the input points, except */ +/* possibly for the boundary markers. If you don't need the boundary */ +/* markers, you should use the `N' (no nodes output) switch to save */ +/* memory. (If you do need boundary markers, but need to save memory, a */ +/* good nasty trick is to set out->pointlist equal to in->pointlist */ +/* before calling triangulate(), so that Triangle overwrites the input */ +/* points with identical copies.) */ +/* - The `I' (no iteration numbers) and `g' (.off file output) switches */ +/* have no effect when Triangle is compiled with TRILIBRARY defined. */ +/* */ +/* `in', `out', and `vorout' are descriptions of the input, the output, */ +/* and the Voronoi output. If the `v' (Voronoi output) switch is not used, */ +/* `vorout' may be NULL. `in' and `out' may never be NULL. */ +/* */ +/* Certain fields of the input and output structures must be initialized, */ +/* as described below. */ +/* */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* */ +/* The `triangulateio' structure. */ +/* */ +/* Used to pass data into and out of the triangulate() procedure. */ +/* */ +/* */ +/* Arrays are used to store points, triangles, markers, and so forth. In */ +/* all cases, the first item in any array is stored starting at index [0]. */ +/* However, that item is item number `1' unless the `z' switch is used, in */ +/* which case it is item number `0'. Hence, you may find it easier to */ +/* index points (and triangles in the neighbor list) if you use the `z' */ +/* switch. Unless, of course, you're calling Triangle from a Fortran */ +/* program. */ +/* */ +/* Description of fields (except the `numberof' fields, which are obvious): */ +/* */ +/* `pointlist': An array of point coordinates. The first point's x */ +/* coordinate is at index [0] and its y coordinate at index [1], followed */ +/* by the coordinates of the remaining points. Each point occupies two */ +/* REALs. */ +/* `pointattributelist': An array of point attributes. Each point's */ +/* attributes occupy `numberofpointattributes' REALs. */ +/* `pointmarkerlist': An array of point markers; one int per point. */ +/* */ +/* `trianglelist': An array of triangle corners. The first triangle's */ +/* first corner is at index [0], followed by its other two corners in */ +/* counterclockwise order, followed by any other nodes if the triangle */ +/* represents a nonlinear element. Each triangle occupies */ +/* `numberofcorners' ints. */ +/* `triangleattributelist': An array of triangle attributes. Each */ +/* triangle's attributes occupy `numberoftriangleattributes' REALs. */ +/* `trianglearealist': An array of triangle area constraints; one REAL per */ +/* triangle. Input only. */ +/* `neighborlist': An array of triangle neighbors; three ints per */ +/* triangle. Output only. */ +/* */ +/* `segmentlist': An array of segment endpoints. The first segment's */ +/* endpoints are at indices [0] and [1], followed by the remaining */ +/* segments. Two ints per segment. */ +/* `segmentmarkerlist': An array of segment markers; one int per segment. */ +/* */ +/* `holelist': An array of holes. The first hole's x and y coordinates */ +/* are at indices [0] and [1], followed by the remaining holes. Two */ +/* REALs per hole. Input only, although the pointer is copied to the */ +/* output structure for your convenience. */ +/* */ +/* `regionlist': An array of regional attributes and area constraints. */ +/* The first constraint's x and y coordinates are at indices [0] and [1], */ +/* followed by the regional attribute at index [2], followed by the */ +/* maximum area at index [3], followed by the remaining area constraints. */ +/* Four REALs per area constraint. Note that each regional attribute is */ +/* used only if you select the `A' switch, and each area constraint is */ +/* used only if you select the `a' switch (with no number following), but */ +/* omitting one of these switches does not change the memory layout. */ +/* Input only, although the pointer is copied to the output structure for */ +/* your convenience. */ +/* */ +/* `edgelist': An array of edge endpoints. The first edge's endpoints are */ +/* at indices [0] and [1], followed by the remaining edges. Two ints per */ +/* edge. Output only. */ +/* `edgemarkerlist': An array of edge markers; one int per edge. Output */ +/* only. */ +/* `normlist': An array of normal vectors, used for infinite rays in */ +/* Voronoi diagrams. The first normal vector's x and y magnitudes are */ +/* at indices [0] and [1], followed by the remaining vectors. For each */ +/* finite edge in a Voronoi diagram, the normal vector written is the */ +/* zero vector. Two REALs per edge. Output only. */ +/* */ +/* */ +/* Any input fields that Triangle will examine must be initialized. */ +/* Furthermore, for each output array that Triangle will write to, you */ +/* must either provide space by setting the appropriate pointer to point */ +/* to the space you want the data written to, or you must initialize the */ +/* pointer to NULL, which tells Triangle to allocate space for the results. */ +/* The latter option is preferable, because Triangle always knows exactly */ +/* how much space to allocate. The former option is provided mainly for */ +/* people who need to call Triangle from Fortran code, though it also makes */ +/* possible some nasty space-saving tricks, like writing the output to the */ +/* same arrays as the input. */ +/* */ +/* Triangle will not free() any input or output arrays, including those it */ +/* allocates itself; that's up to you. You should free arrays allocated by */ +/* Triangle by calling the trifree() procedure defined below. (By default, */ +/* trifree() just calls the standard free() library procedure, but */ +/* applications that call triangulate() may replace trimalloc() and */ +/* trifree() in triangle.c to use specialized memory allocators.) */ +/* */ +/* Here's a guide to help you decide which fields you must initialize */ +/* before you call triangulate(). */ +/* */ +/* `in': */ +/* */ +/* - `pointlist' must always point to a list of points; `numberofpoints' */ +/* and `numberofpointattributes' must be properly set. */ +/* `pointmarkerlist' must either be set to NULL (in which case all */ +/* markers default to zero), or must point to a list of markers. If */ +/* `numberofpointattributes' is not zero, `pointattributelist' must */ +/* point to a list of point attributes. */ +/* - If the `r' switch is used, `trianglelist' must point to a list of */ +/* triangles, and `numberoftriangles', `numberofcorners', and */ +/* `numberoftriangleattributes' must be properly set. If */ +/* `numberoftriangleattributes' is not zero, `triangleattributelist' */ +/* must point to a list of triangle attributes. If the `a' switch is */ +/* used (with no number following), `trianglearealist' must point to a */ +/* list of triangle area constraints. `neighborlist' may be ignored. */ +/* - If the `p' switch is used, `segmentlist' must point to a list of */ +/* segments, `numberofsegments' must be properly set, and */ +/* `segmentmarkerlist' must either be set to NULL (in which case all */ +/* markers default to zero), or must point to a list of markers. */ +/* - If the `p' switch is used without the `r' switch, then */ +/* `numberofholes' and `numberofregions' must be properly set. If */ +/* `numberofholes' is not zero, `holelist' must point to a list of */ +/* holes. If `numberofregions' is not zero, `regionlist' must point to */ +/* a list of region constraints. */ +/* - If the `p' switch is used, `holelist', `numberofholes', */ +/* `regionlist', and `numberofregions' is copied to `out'. (You can */ +/* nonetheless get away with not initializing them if the `r' switch is */ +/* used.) */ +/* - `edgelist', `edgemarkerlist', `normlist', and `numberofedges' may be */ +/* ignored. */ +/* */ +/* `out': */ +/* */ +/* - `pointlist' must be initialized (NULL or pointing to memory) unless */ +/* the `N' switch is used. `pointmarkerlist' must be initialized */ +/* unless the `N' or `B' switch is used. If `N' is not used and */ +/* `in->numberofpointattributes' is not zero, `pointattributelist' must */ +/* be initialized. */ +/* - `trianglelist' must be initialized unless the `E' switch is used. */ +/* `neighborlist' must be initialized if the `n' switch is used. If */ +/* the `E' switch is not used and (`in->numberofelementattributes' is */ +/* not zero or the `A' switch is used), `elementattributelist' must be */ +/* initialized. `trianglearealist' may be ignored. */ +/* - `segmentlist' must be initialized if the `p' or `c' switch is used, */ +/* and the `P' switch is not used. `segmentmarkerlist' must also be */ +/* initialized under these circumstances unless the `B' switch is used. */ +/* - `edgelist' must be initialized if the `e' switch is used. */ +/* `edgemarkerlist' must be initialized if the `e' switch is used and */ +/* the `B' switch is not. */ +/* - `holelist', `regionlist', `normlist', and all scalars may be ignored.*/ +/* */ +/* `vorout' (only needed if `v' switch is used): */ +/* */ +/* - `pointlist' must be initialized. If `in->numberofpointattributes' */ +/* is not zero, `pointattributelist' must be initialized. */ +/* `pointmarkerlist' may be ignored. */ +/* - `edgelist' and `normlist' must both be initialized. */ +/* `edgemarkerlist' may be ignored. */ +/* - Everything else may be ignored. */ +/* */ +/* After a call to triangulate(), the valid fields of `out' and `vorout' */ +/* will depend, in an obvious way, on the choice of switches used. Note */ +/* that when the `p' switch is used, the pointers `holelist' and */ +/* `regionlist' are copied from `in' to `out', but no new space is */ +/* allocated; be careful that you don't free() the same array twice. On */ +/* the other hand, Triangle will never copy the `pointlist' pointer (or any */ +/* others); new space is allocated for `out->pointlist', or if the `N' */ +/* switch is used, `out->pointlist' remains uninitialized. */ +/* */ +/* All of the meaningful `numberof' fields will be properly set; for */ +/* instance, `numberofedges' will represent the number of edges in the */ +/* triangulation whether or not the edges were written. If segments are */ +/* not used, `numberofsegments' will indicate the number of boundary edges. */ +/* */ +/*****************************************************************************/ +typedef double REAL; +typedef void VOID; + +extern "C" struct triangulateio { + REAL *pointlist; /* In / out */ + REAL *pointattributelist; /* In / out */ + int *pointmarkerlist; /* In / out */ + int numberofpoints; /* In / out */ + int numberofpointattributes; /* In / out */ + + int *trianglelist; /* In / out */ + REAL *triangleattributelist; /* In / out */ + REAL *trianglearealist; /* In only */ + int *neighborlist; /* Out only */ + int numberoftriangles; /* In / out */ + int numberofcorners; /* In / out */ + int numberoftriangleattributes; /* In / out */ + + int *segmentlist; /* In / out */ + int *segmentmarkerlist; /* In / out */ + int numberofsegments; /* In / out */ + + REAL *holelist; /* In / pointer to array copied out */ + int numberofholes; /* In / copied out */ + + REAL *regionlist; /* In / pointer to array copied out */ + int numberofregions; /* In / copied out */ + + int *edgelist; /* Out only */ + int *edgemarkerlist; /* Not used with Voronoi diagram; out only */ + REAL *normlist; /* Used only with Voronoi diagram; out only */ + int numberofedges; /* Out only */ +}; + +#ifdef ANSI_DECLARATORS +extern "C" void triangulate(char *, struct triangulateio *, struct triangulateio *, + struct triangulateio *); +extern "C" void trifree(VOID *memptr); +#else /* not ANSI_DECLARATORS */ +void triangulate(); +void trifree(); +#endif /* not ANSI_DECLARATORS */ Index: /issm/trunk/externalpackages/triangle/triangle.h.patch =================================================================== --- /issm/trunk/externalpackages/triangle/triangle.h.patch (revision 28275) +++ /issm/trunk/externalpackages/triangle/triangle.h.patch (revision 1) @@ -1,12 +1,15 @@ -250a251,257 -> /*Patch for ISSM*/ -> #ifndef REAL +249a250,251 > typedef double REAL; > typedef void VOID; -> #endif -> /*End patch*/ -> -283c290 +251c253 +< struct triangulateio { +--- +> extern "C" struct triangulateio { +283c285 < void triangulate(char *, struct triangulateio *, struct triangulateio *, --- > extern "C" void triangulate(char *, struct triangulateio *, struct triangulateio *, +285c287 +< void trifree(VOID *memptr); +--- +> extern "C" void trifree(VOID *memptr); Index: sm/trunk/externalpackages/triangle/triangle.h.patch.js =================================================================== --- /issm/trunk/externalpackages/triangle/triangle.h.patch.js (revision 28275) +++ (revision ) @@ -1,8 +1,0 @@ -250a251,257 -> /*Patch for ISSM*/ -> #ifndef REAL -> typedef double REAL; -> typedef void VOID; -> #endif -> /*End patch*/ -> Index: /issm/trunk/install-sh =================================================================== --- /issm/trunk/install-sh (revision 1) +++ /issm/trunk/install-sh (revision 1) @@ -0,0 +1,1 @@ +link /u/wilkes-r1b/larour/Bin/automake/share/automake-1.10/install-sh Index: sm/trunk/ltmain.sh =================================================================== --- /issm/trunk/ltmain.sh (revision 28275) +++ (revision ) @@ -1,9655 +1,0 @@ - -# libtool (GNU libtool) 2.4.2 -# Written by Gordon Matzigkeit , 1996 - -# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005, 2006, -# 2007, 2008, 2009, 2010, 2011 Free Software Foundation, Inc. -# This is free software; see the source for copying conditions. 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Be careful to quote the path - # and the sed script, to avoid splitting on whitespace, but - # also don't use non-portable quotes within backquotes within - # quotes we have to do it in 2 steps: - extractedcf=`$SED -n -e "$sed_extractcf" < "$progpath"` - eval "$extractedcf" - else - func_error "ignoring unknown tag $tagname" - fi - ;; - esac -} - -# func_check_version_match -# Ensure that we are using m4 macros, and libtool script from the same -# release of libtool. -func_check_version_match () -{ - if test "$package_revision" != "$macro_revision"; then - if test "$VERSION" != "$macro_version"; then - if test -z "$macro_version"; then - cat >&2 <<_LT_EOF -$progname: Version mismatch error. This is $PACKAGE $VERSION, but the -$progname: definition of this LT_INIT comes from an older release. -$progname: You should recreate aclocal.m4 with macros from $PACKAGE $VERSION -$progname: and run autoconf again. -_LT_EOF - else - cat >&2 <<_LT_EOF -$progname: Version mismatch error. This is $PACKAGE $VERSION, but the -$progname: definition of this LT_INIT comes from $PACKAGE $macro_version. -$progname: You should recreate aclocal.m4 with macros from $PACKAGE $VERSION -$progname: and run autoconf again. -_LT_EOF - fi - else - cat >&2 <<_LT_EOF -$progname: Version mismatch error. This is $PACKAGE $VERSION, revision $package_revision, -$progname: but the definition of this LT_INIT comes from revision $macro_revision. -$progname: You should recreate aclocal.m4 with macros from revision $package_revision -$progname: of $PACKAGE $VERSION and run autoconf again. -_LT_EOF - fi - - exit $EXIT_MISMATCH - fi -} - - -# Shorthand for --mode=foo, only valid as the first argument -case $1 in -clean|clea|cle|cl) - shift; set dummy --mode clean ${1+"$@"}; shift - ;; -compile|compil|compi|comp|com|co|c) - shift; set dummy --mode compile ${1+"$@"}; shift - ;; -execute|execut|execu|exec|exe|ex|e) - shift; set dummy --mode execute ${1+"$@"}; shift - ;; -finish|finis|fini|fin|fi|f) - shift; set dummy --mode finish ${1+"$@"}; shift - ;; -install|instal|insta|inst|ins|in|i) - shift; set dummy --mode install ${1+"$@"}; shift - ;; -link|lin|li|l) - shift; set dummy --mode link ${1+"$@"}; shift - ;; -uninstall|uninstal|uninsta|uninst|unins|unin|uni|un|u) - shift; set dummy --mode uninstall ${1+"$@"}; shift - ;; -esac - - - -# Option defaults: -opt_debug=: -opt_dry_run=false -opt_config=false -opt_preserve_dup_deps=false -opt_features=false -opt_finish=false -opt_help=false -opt_help_all=false -opt_silent=: -opt_warning=: -opt_verbose=: -opt_silent=false -opt_verbose=false - - -# Parse options once, thoroughly. This comes as soon as possible in the -# script to make things like `--version' happen as quickly as we can. -{ - # this just eases exit handling - while test $# -gt 0; do - opt="$1" - shift - case $opt in - --debug|-x) opt_debug='set -x' - func_echo "enabling shell trace mode" - $opt_debug - ;; - --dry-run|--dryrun|-n) - opt_dry_run=: - ;; - --config) - opt_config=: -func_config - ;; - --dlopen|-dlopen) - optarg="$1" - opt_dlopen="${opt_dlopen+$opt_dlopen -}$optarg" - shift - ;; - --preserve-dup-deps) - opt_preserve_dup_deps=: - ;; - --features) - opt_features=: -func_features - ;; - --finish) - opt_finish=: -set dummy --mode finish ${1+"$@"}; shift - ;; - --help) - opt_help=: - ;; - --help-all) - opt_help_all=: -opt_help=': help-all' - ;; - --mode) - test $# = 0 && func_missing_arg $opt && break - optarg="$1" - opt_mode="$optarg" -case $optarg in - # Valid mode arguments: - clean|compile|execute|finish|install|link|relink|uninstall) ;; - - # Catch anything else as an error - *) func_error "invalid argument for $opt" - exit_cmd=exit - break - ;; -esac - shift - ;; - --no-silent|--no-quiet) - opt_silent=false -func_append preserve_args " $opt" - ;; - --no-warning|--no-warn) - opt_warning=false -func_append preserve_args " $opt" - ;; - --no-verbose) - opt_verbose=false -func_append preserve_args " $opt" - ;; - --silent|--quiet) - opt_silent=: -func_append preserve_args " $opt" - opt_verbose=false - ;; - --verbose|-v) - opt_verbose=: -func_append preserve_args " $opt" -opt_silent=false - ;; - --tag) - test $# = 0 && func_missing_arg $opt && break - optarg="$1" - opt_tag="$optarg" -func_append preserve_args " $opt $optarg" -func_enable_tag "$optarg" - shift - ;; - - -\?|-h) func_usage ;; - --help) func_help ;; - --version) func_version ;; - - # Separate optargs to long options: - --*=*) - func_split_long_opt "$opt" - set dummy "$func_split_long_opt_name" "$func_split_long_opt_arg" ${1+"$@"} - shift - ;; - - # Separate non-argument short options: - -\?*|-h*|-n*|-v*) - func_split_short_opt "$opt" - set dummy "$func_split_short_opt_name" "-$func_split_short_opt_arg" ${1+"$@"} - shift - ;; - - --) break ;; - -*) func_fatal_help "unrecognized option \`$opt'" ;; - *) set dummy "$opt" ${1+"$@"}; shift; break ;; - esac - done - - # Validate options: - - # save first non-option argument - if test "$#" -gt 0; then - nonopt="$opt" - shift - fi - - # preserve --debug - test "$opt_debug" = : || func_append preserve_args " --debug" - - case $host in - *cygwin* | *mingw* | *pw32* | *cegcc*) - # don't eliminate duplications in $postdeps and $predeps - opt_duplicate_compiler_generated_deps=: - ;; - *) - opt_duplicate_compiler_generated_deps=$opt_preserve_dup_deps - ;; - esac - - $opt_help || { - # Sanity checks first: - func_check_version_match - - if test "$build_libtool_libs" != yes && test "$build_old_libs" != yes; then - func_fatal_configuration "not configured to build any kind of library" - fi - - # Darwin sucks - eval std_shrext=\"$shrext_cmds\" - - # Only execute mode is allowed to have -dlopen flags. - if test -n "$opt_dlopen" && test "$opt_mode" != execute; then - func_error "unrecognized option \`-dlopen'" - $ECHO "$help" 1>&2 - exit $EXIT_FAILURE - fi - - # Change the help message to a mode-specific one. - generic_help="$help" - help="Try \`$progname --help --mode=$opt_mode' for more information." - } - - - # Bail if the options were screwed - $exit_cmd $EXIT_FAILURE -} - - - - -## ----------- ## -## Main. ## -## ----------- ## - -# func_lalib_p file -# True iff FILE is a libtool `.la' library or `.lo' object file. -# This function is only a basic sanity check; it will hardly flush out -# determined imposters. -func_lalib_p () -{ - test -f "$1" && - $SED -e 4q "$1" 2>/dev/null \ - | $GREP "^# Generated by .*$PACKAGE" > /dev/null 2>&1 -} - -# func_lalib_unsafe_p file -# True iff FILE is a libtool `.la' library or `.lo' object file. -# This function implements the same check as func_lalib_p without -# resorting to external programs. To this end, it redirects stdin and -# closes it afterwards, without saving the original file descriptor. -# As a safety measure, use it only where a negative result would be -# fatal anyway. Works if `file' does not exist. -func_lalib_unsafe_p () -{ - lalib_p=no - if test -f "$1" && test -r "$1" && exec 5<&0 <"$1"; then - for lalib_p_l in 1 2 3 4 - do - read lalib_p_line - case "$lalib_p_line" in - \#\ Generated\ by\ *$PACKAGE* ) lalib_p=yes; break;; - esac - done - exec 0<&5 5<&- - fi - test "$lalib_p" = yes -} - -# func_ltwrapper_script_p file -# True iff FILE is a libtool wrapper script -# This function is only a basic sanity check; it will hardly flush out -# determined imposters. -func_ltwrapper_script_p () -{ - func_lalib_p "$1" -} - -# func_ltwrapper_executable_p file -# True iff FILE is a libtool wrapper executable -# This function is only a basic sanity check; it will hardly flush out -# determined imposters. -func_ltwrapper_executable_p () -{ - func_ltwrapper_exec_suffix= - case $1 in - *.exe) ;; - *) func_ltwrapper_exec_suffix=.exe ;; - esac - $GREP "$magic_exe" "$1$func_ltwrapper_exec_suffix" >/dev/null 2>&1 -} - -# func_ltwrapper_scriptname file -# Assumes file is an ltwrapper_executable -# uses $file to determine the appropriate filename for a -# temporary ltwrapper_script. -func_ltwrapper_scriptname () -{ - func_dirname_and_basename "$1" "" "." - func_stripname '' '.exe' "$func_basename_result" - func_ltwrapper_scriptname_result="$func_dirname_result/$objdir/${func_stripname_result}_ltshwrapper" -} - -# func_ltwrapper_p file -# True iff FILE is a libtool wrapper script or wrapper executable -# This function is only a basic sanity check; it will hardly flush out -# determined imposters. -func_ltwrapper_p () -{ - func_ltwrapper_script_p "$1" || func_ltwrapper_executable_p "$1" -} - - -# func_execute_cmds commands fail_cmd -# Execute tilde-delimited COMMANDS. -# If FAIL_CMD is given, eval that upon failure. -# FAIL_CMD may read-access the current command in variable CMD! -func_execute_cmds () -{ - $opt_debug - save_ifs=$IFS; IFS='~' - for cmd in $1; do - IFS=$save_ifs - eval cmd=\"$cmd\" - func_show_eval "$cmd" "${2-:}" - done - IFS=$save_ifs -} - - -# func_source file -# Source FILE, adding directory component if necessary. -# Note that it is not necessary on cygwin/mingw to append a dot to -# FILE even if both FILE and FILE.exe exist: automatic-append-.exe -# behavior happens only for exec(3), not for open(2)! Also, sourcing -# `FILE.' does not work on cygwin managed mounts. -func_source () -{ - $opt_debug - case $1 in - */* | *\\*) . "$1" ;; - *) . "./$1" ;; - esac -} - - -# func_resolve_sysroot PATH -# Replace a leading = in PATH with a sysroot. Store the result into -# func_resolve_sysroot_result -func_resolve_sysroot () -{ - func_resolve_sysroot_result=$1 - case $func_resolve_sysroot_result in - =*) - func_stripname '=' '' "$func_resolve_sysroot_result" - func_resolve_sysroot_result=$lt_sysroot$func_stripname_result - ;; - esac -} - -# func_replace_sysroot PATH -# If PATH begins with the sysroot, replace it with = and -# store the result into func_replace_sysroot_result. -func_replace_sysroot () -{ - case "$lt_sysroot:$1" in - ?*:"$lt_sysroot"*) - func_stripname "$lt_sysroot" '' "$1" - func_replace_sysroot_result="=$func_stripname_result" - ;; - *) - # Including no sysroot. - func_replace_sysroot_result=$1 - ;; - esac -} - -# func_infer_tag arg -# Infer tagged configuration to use if any are available and -# if one wasn't chosen via the "--tag" command line option. -# Only attempt this if the compiler in the base compile -# command doesn't match the default compiler. -# arg is usually of the form 'gcc ...' -func_infer_tag () -{ - $opt_debug - if test -n "$available_tags" && test -z "$tagname"; then - CC_quoted= - for arg in $CC; do - func_append_quoted CC_quoted "$arg" - done - CC_expanded=`func_echo_all $CC` - CC_quoted_expanded=`func_echo_all $CC_quoted` - case $@ in - # Blanks in the command may have been stripped by the calling shell, - # but not from the CC environment variable when configure was run. - " $CC "* | "$CC "* | " $CC_expanded "* | "$CC_expanded "* | \ - " $CC_quoted"* | "$CC_quoted "* | " $CC_quoted_expanded "* | "$CC_quoted_expanded "*) ;; - # Blanks at the start of $base_compile will cause this to fail - # if we don't check for them as well. - *) - for z in $available_tags; do - if $GREP "^# ### BEGIN LIBTOOL TAG CONFIG: $z$" < "$progpath" > /dev/null; then - # Evaluate the configuration. - eval "`${SED} -n -e '/^# ### BEGIN LIBTOOL TAG CONFIG: '$z'$/,/^# ### END LIBTOOL TAG CONFIG: '$z'$/p' < $progpath`" - CC_quoted= - for arg in $CC; do - # Double-quote args containing other shell metacharacters. - func_append_quoted CC_quoted "$arg" - done - CC_expanded=`func_echo_all $CC` - CC_quoted_expanded=`func_echo_all $CC_quoted` - case "$@ " in - " $CC "* | "$CC "* | " $CC_expanded "* | "$CC_expanded "* | \ - " $CC_quoted"* | "$CC_quoted "* | " $CC_quoted_expanded "* | "$CC_quoted_expanded "*) - # The compiler in the base compile command matches - # the one in the tagged configuration. - # Assume this is the tagged configuration we want. - tagname=$z - break - ;; - esac - fi - done - # If $tagname still isn't set, then no tagged configuration - # was found and let the user know that the "--tag" command - # line option must be used. - if test -z "$tagname"; then - func_echo "unable to infer tagged configuration" - func_fatal_error "specify a tag with \`--tag'" -# else -# func_verbose "using $tagname tagged configuration" - fi - ;; - esac - fi -} - - - -# func_write_libtool_object output_name pic_name nonpic_name -# Create a libtool object file (analogous to a ".la" file), -# but don't create it if we're doing a dry run. -func_write_libtool_object () -{ - write_libobj=${1} - if test "$build_libtool_libs" = yes; then - write_lobj=\'${2}\' - else - write_lobj=none - fi - - if test "$build_old_libs" = yes; then - write_oldobj=\'${3}\' - else - write_oldobj=none - fi - - $opt_dry_run || { - cat >${write_libobj}T </dev/null` - if test "$?" -eq 0 && test -n "${func_convert_core_file_wine_to_w32_tmp}"; then - func_convert_core_file_wine_to_w32_result=`$ECHO "$func_convert_core_file_wine_to_w32_tmp" | - $SED -e "$lt_sed_naive_backslashify"` - else - func_convert_core_file_wine_to_w32_result= - fi - fi -} -# end: func_convert_core_file_wine_to_w32 - - -# func_convert_core_path_wine_to_w32 ARG -# Helper function used by path conversion functions when $build is *nix, and -# $host is mingw, cygwin, or some other w32 environment. Relies on a correctly -# configured wine environment available, with the winepath program in $build's -# $PATH. Assumes ARG has no leading or trailing path separator characters. -# -# ARG is path to be converted from $build format to win32. -# Result is available in $func_convert_core_path_wine_to_w32_result. -# Unconvertible file (directory) names in ARG are skipped; if no directory names -# are convertible, then the result may be empty. -func_convert_core_path_wine_to_w32 () -{ - $opt_debug - # unfortunately, winepath doesn't convert paths, only file names - func_convert_core_path_wine_to_w32_result="" - if test -n "$1"; then - oldIFS=$IFS - IFS=: - for func_convert_core_path_wine_to_w32_f in $1; do - IFS=$oldIFS - func_convert_core_file_wine_to_w32 "$func_convert_core_path_wine_to_w32_f" - if test -n "$func_convert_core_file_wine_to_w32_result" ; then - if test -z "$func_convert_core_path_wine_to_w32_result"; then - func_convert_core_path_wine_to_w32_result="$func_convert_core_file_wine_to_w32_result" - else - func_append func_convert_core_path_wine_to_w32_result ";$func_convert_core_file_wine_to_w32_result" - fi - fi - done - IFS=$oldIFS - fi -} -# end: func_convert_core_path_wine_to_w32 - - -# func_cygpath ARGS... -# Wrapper around calling the cygpath program via LT_CYGPATH. This is used when -# when (1) $build is *nix and Cygwin is hosted via a wine environment; or (2) -# $build is MSYS and $host is Cygwin, or (3) $build is Cygwin. In case (1) or -# (2), returns the Cygwin file name or path in func_cygpath_result (input -# file name or path is assumed to be in w32 format, as previously converted -# from $build's *nix or MSYS format). In case (3), returns the w32 file name -# or path in func_cygpath_result (input file name or path is assumed to be in -# Cygwin format). Returns an empty string on error. -# -# ARGS are passed to cygpath, with the last one being the file name or path to -# be converted. -# -# Specify the absolute *nix (or w32) name to cygpath in the LT_CYGPATH -# environment variable; do not put it in $PATH. -func_cygpath () -{ - $opt_debug - if test -n "$LT_CYGPATH" && test -f "$LT_CYGPATH"; then - func_cygpath_result=`$LT_CYGPATH "$@" 2>/dev/null` - if test "$?" -ne 0; then - # on failure, ensure result is empty - func_cygpath_result= - fi - else - func_cygpath_result= - func_error "LT_CYGPATH is empty or specifies non-existent file: \`$LT_CYGPATH'" - fi -} -#end: func_cygpath - - -# func_convert_core_msys_to_w32 ARG -# Convert file name or path ARG from MSYS format to w32 format. Return -# result in func_convert_core_msys_to_w32_result. -func_convert_core_msys_to_w32 () -{ - $opt_debug - # awkward: cmd appends spaces to result - func_convert_core_msys_to_w32_result=`( cmd //c echo "$1" ) 2>/dev/null | - $SED -e 's/[ ]*$//' -e "$lt_sed_naive_backslashify"` -} -#end: func_convert_core_msys_to_w32 - - -# func_convert_file_check ARG1 ARG2 -# Verify that ARG1 (a file name in $build format) was converted to $host -# format in ARG2. Otherwise, emit an error message, but continue (resetting -# func_to_host_file_result to ARG1). -func_convert_file_check () -{ - $opt_debug - if test -z "$2" && test -n "$1" ; then - func_error "Could not determine host file name corresponding to" - func_error " \`$1'" - func_error "Continuing, but uninstalled executables may not work." - # Fallback: - func_to_host_file_result="$1" - fi -} -# end func_convert_file_check - - -# func_convert_path_check FROM_PATHSEP TO_PATHSEP FROM_PATH TO_PATH -# Verify that FROM_PATH (a path in $build format) was converted to $host -# format in TO_PATH. Otherwise, emit an error message, but continue, resetting -# func_to_host_file_result to a simplistic fallback value (see below). -func_convert_path_check () -{ - $opt_debug - if test -z "$4" && test -n "$3"; then - func_error "Could not determine the host path corresponding to" - func_error " \`$3'" - func_error "Continuing, but uninstalled executables may not work." - # Fallback. This is a deliberately simplistic "conversion" and - # should not be "improved". See libtool.info. - if test "x$1" != "x$2"; then - lt_replace_pathsep_chars="s|$1|$2|g" - func_to_host_path_result=`echo "$3" | - $SED -e "$lt_replace_pathsep_chars"` - else - func_to_host_path_result="$3" - fi - fi -} -# end func_convert_path_check - - -# func_convert_path_front_back_pathsep FRONTPAT BACKPAT REPL ORIG -# Modifies func_to_host_path_result by prepending REPL if ORIG matches FRONTPAT -# and appending REPL if ORIG matches BACKPAT. -func_convert_path_front_back_pathsep () -{ - $opt_debug - case $4 in - $1 ) func_to_host_path_result="$3$func_to_host_path_result" - ;; - esac - case $4 in - $2 ) func_append func_to_host_path_result "$3" - ;; - esac -} -# end func_convert_path_front_back_pathsep - - -################################################## -# $build to $host FILE NAME CONVERSION FUNCTIONS # -################################################## -# invoked via `$to_host_file_cmd ARG' -# -# In each case, ARG is the path to be converted from $build to $host format. -# Result will be available in $func_to_host_file_result. - - -# func_to_host_file ARG -# Converts the file name ARG from $build format to $host format. Return result -# in func_to_host_file_result. -func_to_host_file () -{ - $opt_debug - $to_host_file_cmd "$1" -} -# end func_to_host_file - - -# func_to_tool_file ARG LAZY -# converts the file name ARG from $build format to toolchain format. Return -# result in func_to_tool_file_result. If the conversion in use is listed -# in (the comma separated) LAZY, no conversion takes place. -func_to_tool_file () -{ - $opt_debug - case ,$2, in - *,"$to_tool_file_cmd",*) - func_to_tool_file_result=$1 - ;; - *) - $to_tool_file_cmd "$1" - func_to_tool_file_result=$func_to_host_file_result - ;; - esac -} -# end func_to_tool_file - - -# func_convert_file_noop ARG -# Copy ARG to func_to_host_file_result. -func_convert_file_noop () -{ - func_to_host_file_result="$1" -} -# end func_convert_file_noop - - -# func_convert_file_msys_to_w32 ARG -# Convert file name ARG from (mingw) MSYS to (mingw) w32 format; automatic -# conversion to w32 is not available inside the cwrapper. Returns result in -# func_to_host_file_result. -func_convert_file_msys_to_w32 () -{ - $opt_debug - func_to_host_file_result="$1" - if test -n "$1"; then - func_convert_core_msys_to_w32 "$1" - func_to_host_file_result="$func_convert_core_msys_to_w32_result" - fi - func_convert_file_check "$1" "$func_to_host_file_result" -} -# end func_convert_file_msys_to_w32 - - -# func_convert_file_cygwin_to_w32 ARG -# Convert file name ARG from Cygwin to w32 format. Returns result in -# func_to_host_file_result. -func_convert_file_cygwin_to_w32 () -{ - $opt_debug - func_to_host_file_result="$1" - if test -n "$1"; then - # because $build is cygwin, we call "the" cygpath in $PATH; no need to use - # LT_CYGPATH in this case. - func_to_host_file_result=`cygpath -m "$1"` - fi - func_convert_file_check "$1" "$func_to_host_file_result" -} -# end func_convert_file_cygwin_to_w32 - - -# func_convert_file_nix_to_w32 ARG -# Convert file name ARG from *nix to w32 format. Requires a wine environment -# and a working winepath. Returns result in func_to_host_file_result. -func_convert_file_nix_to_w32 () -{ - $opt_debug - func_to_host_file_result="$1" - if test -n "$1"; then - func_convert_core_file_wine_to_w32 "$1" - func_to_host_file_result="$func_convert_core_file_wine_to_w32_result" - fi - func_convert_file_check "$1" "$func_to_host_file_result" -} -# end func_convert_file_nix_to_w32 - - -# func_convert_file_msys_to_cygwin ARG -# Convert file name ARG from MSYS to Cygwin format. Requires LT_CYGPATH set. -# Returns result in func_to_host_file_result. -func_convert_file_msys_to_cygwin () -{ - $opt_debug - func_to_host_file_result="$1" - if test -n "$1"; then - func_convert_core_msys_to_w32 "$1" - func_cygpath -u "$func_convert_core_msys_to_w32_result" - func_to_host_file_result="$func_cygpath_result" - fi - func_convert_file_check "$1" "$func_to_host_file_result" -} -# end func_convert_file_msys_to_cygwin - - -# func_convert_file_nix_to_cygwin ARG -# Convert file name ARG from *nix to Cygwin format. Requires Cygwin installed -# in a wine environment, working winepath, and LT_CYGPATH set. Returns result -# in func_to_host_file_result. -func_convert_file_nix_to_cygwin () -{ - $opt_debug - func_to_host_file_result="$1" - if test -n "$1"; then - # convert from *nix to w32, then use cygpath to convert from w32 to cygwin. - func_convert_core_file_wine_to_w32 "$1" - func_cygpath -u "$func_convert_core_file_wine_to_w32_result" - func_to_host_file_result="$func_cygpath_result" - fi - func_convert_file_check "$1" "$func_to_host_file_result" -} -# end func_convert_file_nix_to_cygwin - - -############################################# -# $build to $host PATH CONVERSION FUNCTIONS # -############################################# -# invoked via `$to_host_path_cmd ARG' -# -# In each case, ARG is the path to be converted from $build to $host format. -# The result will be available in $func_to_host_path_result. -# -# Path separators are also converted from $build format to $host format. If -# ARG begins or ends with a path separator character, it is preserved (but -# converted to $host format) on output. -# -# All path conversion functions are named using the following convention: -# file name conversion function : func_convert_file_X_to_Y () -# path conversion function : func_convert_path_X_to_Y () -# where, for any given $build/$host combination the 'X_to_Y' value is the -# same. If conversion functions are added for new $build/$host combinations, -# the two new functions must follow this pattern, or func_init_to_host_path_cmd -# will break. - - -# func_init_to_host_path_cmd -# Ensures that function "pointer" variable $to_host_path_cmd is set to the -# appropriate value, based on the value of $to_host_file_cmd. -to_host_path_cmd= -func_init_to_host_path_cmd () -{ - $opt_debug - if test -z "$to_host_path_cmd"; then - func_stripname 'func_convert_file_' '' "$to_host_file_cmd" - to_host_path_cmd="func_convert_path_${func_stripname_result}" - fi -} - - -# func_to_host_path ARG -# Converts the path ARG from $build format to $host format. Return result -# in func_to_host_path_result. -func_to_host_path () -{ - $opt_debug - func_init_to_host_path_cmd - $to_host_path_cmd "$1" -} -# end func_to_host_path - - -# func_convert_path_noop ARG -# Copy ARG to func_to_host_path_result. -func_convert_path_noop () -{ - func_to_host_path_result="$1" -} -# end func_convert_path_noop - - -# func_convert_path_msys_to_w32 ARG -# Convert path ARG from (mingw) MSYS to (mingw) w32 format; automatic -# conversion to w32 is not available inside the cwrapper. Returns result in -# func_to_host_path_result. -func_convert_path_msys_to_w32 () -{ - $opt_debug - func_to_host_path_result="$1" - if test -n "$1"; then - # Remove leading and trailing path separator characters from ARG. MSYS - # behavior is inconsistent here; cygpath turns them into '.;' and ';.'; - # and winepath ignores them completely. - func_stripname : : "$1" - func_to_host_path_tmp1=$func_stripname_result - func_convert_core_msys_to_w32 "$func_to_host_path_tmp1" - func_to_host_path_result="$func_convert_core_msys_to_w32_result" - func_convert_path_check : ";" \ - "$func_to_host_path_tmp1" "$func_to_host_path_result" - func_convert_path_front_back_pathsep ":*" "*:" ";" "$1" - fi -} -# end func_convert_path_msys_to_w32 - - -# func_convert_path_cygwin_to_w32 ARG -# Convert path ARG from Cygwin to w32 format. Returns result in -# func_to_host_file_result. -func_convert_path_cygwin_to_w32 () -{ - $opt_debug - func_to_host_path_result="$1" - if test -n "$1"; then - # See func_convert_path_msys_to_w32: - func_stripname : : "$1" - func_to_host_path_tmp1=$func_stripname_result - func_to_host_path_result=`cygpath -m -p "$func_to_host_path_tmp1"` - func_convert_path_check : ";" \ - "$func_to_host_path_tmp1" "$func_to_host_path_result" - func_convert_path_front_back_pathsep ":*" "*:" ";" "$1" - fi -} -# end func_convert_path_cygwin_to_w32 - - -# func_convert_path_nix_to_w32 ARG -# Convert path ARG from *nix to w32 format. Requires a wine environment and -# a working winepath. Returns result in func_to_host_file_result. -func_convert_path_nix_to_w32 () -{ - $opt_debug - func_to_host_path_result="$1" - if test -n "$1"; then - # See func_convert_path_msys_to_w32: - func_stripname : : "$1" - func_to_host_path_tmp1=$func_stripname_result - func_convert_core_path_wine_to_w32 "$func_to_host_path_tmp1" - func_to_host_path_result="$func_convert_core_path_wine_to_w32_result" - func_convert_path_check : ";" \ - "$func_to_host_path_tmp1" "$func_to_host_path_result" - func_convert_path_front_back_pathsep ":*" "*:" ";" "$1" - fi -} -# end func_convert_path_nix_to_w32 - - -# func_convert_path_msys_to_cygwin ARG -# Convert path ARG from MSYS to Cygwin format. Requires LT_CYGPATH set. -# Returns result in func_to_host_file_result. -func_convert_path_msys_to_cygwin () -{ - $opt_debug - func_to_host_path_result="$1" - if test -n "$1"; then - # See func_convert_path_msys_to_w32: - func_stripname : : "$1" - func_to_host_path_tmp1=$func_stripname_result - func_convert_core_msys_to_w32 "$func_to_host_path_tmp1" - func_cygpath -u -p "$func_convert_core_msys_to_w32_result" - func_to_host_path_result="$func_cygpath_result" - func_convert_path_check : : \ - "$func_to_host_path_tmp1" "$func_to_host_path_result" - func_convert_path_front_back_pathsep ":*" "*:" : "$1" - fi -} -# end func_convert_path_msys_to_cygwin - - -# func_convert_path_nix_to_cygwin ARG -# Convert path ARG from *nix to Cygwin format. Requires Cygwin installed in a -# a wine environment, working winepath, and LT_CYGPATH set. Returns result in -# func_to_host_file_result. -func_convert_path_nix_to_cygwin () -{ - $opt_debug - func_to_host_path_result="$1" - if test -n "$1"; then - # Remove leading and trailing path separator characters from - # ARG. msys behavior is inconsistent here, cygpath turns them - # into '.;' and ';.', and winepath ignores them completely. - func_stripname : : "$1" - func_to_host_path_tmp1=$func_stripname_result - func_convert_core_path_wine_to_w32 "$func_to_host_path_tmp1" - func_cygpath -u -p "$func_convert_core_path_wine_to_w32_result" - func_to_host_path_result="$func_cygpath_result" - func_convert_path_check : : \ - "$func_to_host_path_tmp1" "$func_to_host_path_result" - func_convert_path_front_back_pathsep ":*" "*:" : "$1" - fi -} -# end func_convert_path_nix_to_cygwin - - -# func_mode_compile arg... -func_mode_compile () -{ - $opt_debug - # Get the compilation command and the source file. - base_compile= - srcfile="$nonopt" # always keep a non-empty value in "srcfile" - suppress_opt=yes - suppress_output= - arg_mode=normal - libobj= - later= - pie_flag= - - for arg - do - case $arg_mode in - arg ) - # do not "continue". Instead, add this to base_compile - lastarg="$arg" - arg_mode=normal - ;; - - target ) - libobj="$arg" - arg_mode=normal - continue - ;; - - normal ) - # Accept any command-line options. - case $arg in - -o) - test -n "$libobj" && \ - func_fatal_error "you cannot specify \`-o' more than once" - arg_mode=target - continue - ;; - - -pie | -fpie | -fPIE) - func_append pie_flag " $arg" - continue - ;; - - -shared | -static | -prefer-pic | -prefer-non-pic) - func_append later " $arg" - continue - ;; - - -no-suppress) - suppress_opt=no - continue - ;; - - -Xcompiler) - arg_mode=arg # the next one goes into the "base_compile" arg list - continue # The current "srcfile" will either be retained or - ;; # replaced later. I would guess that would be a bug. - - -Wc,*) - func_stripname '-Wc,' '' "$arg" - args=$func_stripname_result - lastarg= - save_ifs="$IFS"; IFS=',' - for arg in $args; do - IFS="$save_ifs" - func_append_quoted lastarg "$arg" - done - IFS="$save_ifs" - func_stripname ' ' '' "$lastarg" - lastarg=$func_stripname_result - - # Add the arguments to base_compile. - func_append base_compile " $lastarg" - continue - ;; - - *) - # Accept the current argument as the source file. - # The previous "srcfile" becomes the current argument. - # - lastarg="$srcfile" - srcfile="$arg" - ;; - esac # case $arg - ;; - esac # case $arg_mode - - # Aesthetically quote the previous argument. - func_append_quoted base_compile "$lastarg" - done # for arg - - case $arg_mode in - arg) - func_fatal_error "you must specify an argument for -Xcompile" - ;; - target) - func_fatal_error "you must specify a target with \`-o'" - ;; - *) - # Get the name of the library object. - test -z "$libobj" && { - func_basename "$srcfile" - libobj="$func_basename_result" - } - ;; - esac - - # Recognize several different file suffixes. - # If the user specifies -o file.o, it is replaced with file.lo - case $libobj in - *.[cCFSifmso] | \ - *.ada | *.adb | *.ads | *.asm | \ - *.c++ | *.cc | *.ii | *.class | *.cpp | *.cxx | \ - *.[fF][09]? | *.for | *.java | *.go | *.obj | *.sx | *.cu | *.cup) - func_xform "$libobj" - libobj=$func_xform_result - ;; - esac - - case $libobj in - *.lo) func_lo2o "$libobj"; obj=$func_lo2o_result ;; - *) - func_fatal_error "cannot determine name of library object from \`$libobj'" - ;; - esac - - func_infer_tag $base_compile - - for arg in $later; do - case $arg in - -shared) - test "$build_libtool_libs" != yes && \ - func_fatal_configuration "can not build a shared library" - build_old_libs=no - continue - ;; - - -static) - build_libtool_libs=no - build_old_libs=yes - continue - ;; - - -prefer-pic) - pic_mode=yes - continue - ;; - - -prefer-non-pic) - pic_mode=no - continue - ;; - esac - done - - func_quote_for_eval "$libobj" - test "X$libobj" != "X$func_quote_for_eval_result" \ - && $ECHO "X$libobj" | $GREP '[]~#^*{};<>?"'"'"' &()|`$[]' \ - && func_warning "libobj name \`$libobj' may not contain shell special characters." - func_dirname_and_basename "$obj" "/" "" - objname="$func_basename_result" - xdir="$func_dirname_result" - lobj=${xdir}$objdir/$objname - - test -z "$base_compile" && \ - func_fatal_help "you must specify a compilation command" - - # Delete any leftover library objects. - if test "$build_old_libs" = yes; then - removelist="$obj $lobj $libobj ${libobj}T" - else - removelist="$lobj $libobj ${libobj}T" - fi - - # On Cygwin there's no "real" PIC flag so we must build both object types - case $host_os in - cygwin* | mingw* | pw32* | os2* | cegcc*) - pic_mode=default - ;; - esac - if test "$pic_mode" = no && test "$deplibs_check_method" != pass_all; then - # non-PIC code in shared libraries is not supported - pic_mode=default - fi - - # Calculate the filename of the output object if compiler does - # not support -o with -c - if test "$compiler_c_o" = no; then - output_obj=`$ECHO "$srcfile" | $SED 's%^.*/%%; s%\.[^.]*$%%'`.${objext} - lockfile="$output_obj.lock" - else - output_obj= - need_locks=no - lockfile= - fi - - # Lock this critical section if it is needed - # We use this script file to make the link, it avoids creating a new file - if test "$need_locks" = yes; then - until $opt_dry_run || ln "$progpath" "$lockfile" 2>/dev/null; do - func_echo "Waiting for $lockfile to be removed" - sleep 2 - done - elif test "$need_locks" = warn; then - if test -f "$lockfile"; then - $ECHO "\ -*** ERROR, $lockfile exists and contains: -`cat $lockfile 2>/dev/null` - -This indicates that another process is trying to use the same -temporary object file, and libtool could not work around it because -your compiler does not support \`-c' and \`-o' together. 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If you -repeat this compilation, it may succeed, by chance, but you had better -avoid parallel builds (make -j) in this platform, or get a better -compiler." - - $opt_dry_run || $RM $removelist - exit $EXIT_FAILURE - fi - - # Just move the object if needed, then go on to compile the next one - if test -n "$output_obj" && test "X$output_obj" != "X$lobj"; then - func_show_eval '$MV "$output_obj" "$lobj"' \ - 'error=$?; $opt_dry_run || $RM $removelist; exit $error' - fi - - # Allow error messages only from the first compilation. - if test "$suppress_opt" = yes; then - suppress_output=' >/dev/null 2>&1' - fi - fi - - # Only build a position-dependent object if we build old libraries. - if test "$build_old_libs" = yes; then - if test "$pic_mode" != yes; then - # Don't build PIC code - command="$base_compile $qsrcfile$pie_flag" - else - command="$base_compile $qsrcfile $pic_flag" - fi - if test "$compiler_c_o" = yes; then - func_append command " -o $obj" - fi - - # Suppress compiler output if we already did a PIC compilation. - func_append command "$suppress_output" - func_show_eval_locale "$command" \ - '$opt_dry_run || $RM $removelist; exit $EXIT_FAILURE' - - if test "$need_locks" = warn && - test "X`cat $lockfile 2>/dev/null`" != "X$srcfile"; then - $ECHO "\ -*** ERROR, $lockfile contains: -`cat $lockfile 2>/dev/null` - -but it should contain: -$srcfile - -This indicates that another process is trying to use the same -temporary object file, and libtool could not work around it because -your compiler does not support \`-c' and \`-o' together. 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then - func_append libdirs " $opt" - - elif test -f "$opt"; then - if func_lalib_unsafe_p "$opt"; then - func_append libs " $opt" - else - func_warning "\`$opt' is not a valid libtool archive" - fi - - else - func_fatal_error "invalid argument \`$opt'" - fi - done - - if test -n "$libs"; then - if test -n "$lt_sysroot"; then - sysroot_regex=`$ECHO "$lt_sysroot" | $SED "$sed_make_literal_regex"` - sysroot_cmd="s/\([ ']\)$sysroot_regex/\1/g;" - else - sysroot_cmd= - fi - - # Remove sysroot references - if $opt_dry_run; then - for lib in $libs; do - echo "removing references to $lt_sysroot and \`=' prefixes from $lib" - done - else - tmpdir=`func_mktempdir` - for lib in $libs; do - sed -e "${sysroot_cmd} s/\([ ']-[LR]\)=/\1/g; s/\([ ']\)=/\1/g" $lib \ - > $tmpdir/tmp-la - mv -f $tmpdir/tmp-la $lib - done - ${RM}r "$tmpdir" - fi - fi - - if test -n "$finish_cmds$finish_eval" && test -n "$libdirs"; then - for libdir in $libdirs; do - if test -n "$finish_cmds"; then - # Do each command in the finish commands. - func_execute_cmds "$finish_cmds" 'admincmds="$admincmds -'"$cmd"'"' - fi - if test -n "$finish_eval"; then - # Do the single finish_eval. - eval cmds=\"$finish_eval\" - $opt_dry_run || eval "$cmds" || func_append admincmds " - $cmds" - fi - done - fi - - # Exit here if they wanted silent mode. - $opt_silent && exit $EXIT_SUCCESS - - if test -n "$finish_cmds$finish_eval" && test -n "$libdirs"; then - echo "----------------------------------------------------------------------" - echo "Libraries have been installed in:" - for libdir in $libdirs; do - $ECHO " $libdir" - done - echo - echo "If you ever happen to want to link against installed libraries" - echo "in a given directory, LIBDIR, you must either use libtool, and" - echo "specify the full pathname of the library, or use the \`-LLIBDIR'" - echo "flag during linking and do at least one of the following:" - if test -n "$shlibpath_var"; then - echo " - add LIBDIR to the \`$shlibpath_var' environment variable" - echo " during execution" - fi - if test -n "$runpath_var"; then - echo " - add LIBDIR to the \`$runpath_var' environment variable" - echo " during linking" - fi - if test -n "$hardcode_libdir_flag_spec"; then - libdir=LIBDIR - eval flag=\"$hardcode_libdir_flag_spec\" - - $ECHO " - use the \`$flag' linker flag" - fi - if test -n "$admincmds"; then - $ECHO " - have your system administrator run these commands:$admincmds" - fi - if test -f /etc/ld.so.conf; then - echo " - have your system administrator add LIBDIR to \`/etc/ld.so.conf'" - fi - echo - - echo "See any operating system documentation about shared libraries for" - case $host in - solaris2.[6789]|solaris2.1[0-9]) - echo "more information, such as the ld(1), crle(1) and ld.so(8) manual" - echo "pages." - ;; - *) - echo "more information, such as the ld(1) and ld.so(8) manual pages." - ;; - esac - echo "----------------------------------------------------------------------" - fi - exit $EXIT_SUCCESS -} - -test "$opt_mode" = finish && func_mode_finish ${1+"$@"} - - -# func_mode_install arg... -func_mode_install () -{ - $opt_debug - # There may be an optional sh(1) argument at the beginning of - # install_prog (especially on Windows NT). - if test "$nonopt" = "$SHELL" || test "$nonopt" = /bin/sh || - # Allow the use of GNU shtool's install command. - case $nonopt in *shtool*) :;; *) false;; esac; then - # Aesthetically quote it. - func_quote_for_eval "$nonopt" - install_prog="$func_quote_for_eval_result " - arg=$1 - shift - else - install_prog= - arg=$nonopt - fi - - # The real first argument should be the name of the installation program. - # Aesthetically quote it. - func_quote_for_eval "$arg" - func_append install_prog "$func_quote_for_eval_result" - install_shared_prog=$install_prog - case " $install_prog " in - *[\\\ /]cp\ *) install_cp=: ;; - *) install_cp=false ;; - esac - - # We need to accept at least all the BSD install flags. - dest= - files= - opts= - prev= - install_type= - isdir=no - stripme= - no_mode=: - for arg - do - arg2= - if test -n "$dest"; then - func_append files " $dest" - dest=$arg - continue - fi - - case $arg in - -d) isdir=yes ;; - -f) - if $install_cp; then :; else - prev=$arg - fi - ;; - -g | -m | -o) - prev=$arg - ;; - -s) - stripme=" -s" - continue - ;; - -*) - ;; - *) - # If the previous option needed an argument, then skip it. - if test -n "$prev"; then - if test "x$prev" = x-m && test -n "$install_override_mode"; then - arg2=$install_override_mode - no_mode=false - fi - prev= - else - dest=$arg - continue - fi - ;; - esac - - # Aesthetically quote the argument. - func_quote_for_eval "$arg" - func_append install_prog " $func_quote_for_eval_result" - if test -n "$arg2"; then - func_quote_for_eval "$arg2" - fi - func_append install_shared_prog " $func_quote_for_eval_result" - done - - test -z "$install_prog" && \ - func_fatal_help "you must specify an install program" - - test -n "$prev" && \ - func_fatal_help "the \`$prev' option requires an argument" - - if test -n "$install_override_mode" && $no_mode; then - if $install_cp; then :; else - func_quote_for_eval "$install_override_mode" - func_append install_shared_prog " -m $func_quote_for_eval_result" - fi - fi - - if test -z "$files"; then - if test -z "$dest"; then - func_fatal_help "no file or destination specified" - else - func_fatal_help "you must specify a destination" - fi - fi - - # Strip any trailing slash from the destination. - func_stripname '' '/' "$dest" - dest=$func_stripname_result - - # Check to see that the destination is a directory. - test -d "$dest" && isdir=yes - if test "$isdir" = yes; then - destdir="$dest" - destname= - else - func_dirname_and_basename "$dest" "" "." - destdir="$func_dirname_result" - destname="$func_basename_result" - - # Not a directory, so check to see that there is only one file specified. - set dummy $files; shift - test "$#" -gt 1 && \ - func_fatal_help "\`$dest' is not a directory" - fi - case $destdir in - [\\/]* | [A-Za-z]:[\\/]*) ;; - *) - for file in $files; do - case $file in - *.lo) ;; - *) - func_fatal_help "\`$destdir' must be an absolute directory name" - ;; - esac - done - ;; - esac - - # This variable tells wrapper scripts just to set variables rather - # than running their programs. - libtool_install_magic="$magic" - - staticlibs= - future_libdirs= - current_libdirs= - for file in $files; do - - # Do each installation. - case $file in - *.$libext) - # Do the static libraries later. - func_append staticlibs " $file" - ;; - - *.la) - func_resolve_sysroot "$file" - file=$func_resolve_sysroot_result - - # Check to see that this really is a libtool archive. - func_lalib_unsafe_p "$file" \ - || func_fatal_help "\`$file' is not a valid libtool archive" - - library_names= - old_library= - relink_command= - func_source "$file" - - # Add the libdir to current_libdirs if it is the destination. - if test "X$destdir" = "X$libdir"; then - case "$current_libdirs " in - *" $libdir "*) ;; - *) func_append current_libdirs " $libdir" ;; - esac - else - # Note the libdir as a future libdir. - case "$future_libdirs " in - *" $libdir "*) ;; - *) func_append future_libdirs " $libdir" ;; - esac - fi - - func_dirname "$file" "/" "" - dir="$func_dirname_result" - func_append dir "$objdir" - - if test -n "$relink_command"; then - # Determine the prefix the user has applied to our future dir. - inst_prefix_dir=`$ECHO "$destdir" | $SED -e "s%$libdir\$%%"` - - # Don't allow the user to place us outside of our expected - # location b/c this prevents finding dependent libraries that - # are installed to the same prefix. - # At present, this check doesn't affect windows .dll's that - # are installed into $libdir/../bin (currently, that works fine) - # but it's something to keep an eye on. - test "$inst_prefix_dir" = "$destdir" && \ - func_fatal_error "error: cannot install \`$file' to a directory not ending in $libdir" - - if test -n "$inst_prefix_dir"; then - # Stick the inst_prefix_dir data into the link command. - relink_command=`$ECHO "$relink_command" | $SED "s%@inst_prefix_dir@%-inst-prefix-dir $inst_prefix_dir%"` - else - relink_command=`$ECHO "$relink_command" | $SED "s%@inst_prefix_dir@%%"` - fi - - func_warning "relinking \`$file'" - func_show_eval "$relink_command" \ - 'func_fatal_error "error: relink \`$file'\'' with the above command before installing it"' - fi - - # See the names of the shared library. - set dummy $library_names; shift - if test -n "$1"; then - realname="$1" - shift - - srcname="$realname" - test -n "$relink_command" && srcname="$realname"T - - # Install the shared library and build the symlinks. - func_show_eval "$install_shared_prog $dir/$srcname $destdir/$realname" \ - 'exit $?' - tstripme="$stripme" - case $host_os in - cygwin* | mingw* | pw32* | cegcc*) - case $realname in - *.dll.a) - tstripme="" - ;; - esac - ;; - esac - if test -n "$tstripme" && test -n "$striplib"; then - func_show_eval "$striplib $destdir/$realname" 'exit $?' - fi - - if test "$#" -gt 0; then - # Delete the old symlinks, and create new ones. - # Try `ln -sf' first, because the `ln' binary might depend on - # the symlink we replace! Solaris /bin/ln does not understand -f, - # so we also need to try rm && ln -s. - for linkname - do - test "$linkname" != "$realname" \ - && func_show_eval "(cd $destdir && { $LN_S -f $realname $linkname || { $RM $linkname && $LN_S $realname $linkname; }; })" - done - fi - - # Do each command in the postinstall commands. - lib="$destdir/$realname" - func_execute_cmds "$postinstall_cmds" 'exit $?' - fi - - # Install the pseudo-library for information purposes. - func_basename "$file" - name="$func_basename_result" - instname="$dir/$name"i - func_show_eval "$install_prog $instname $destdir/$name" 'exit $?' - - # Maybe install the static library, too. - test -n "$old_library" && func_append staticlibs " $dir/$old_library" - ;; - - *.lo) - # Install (i.e. copy) a libtool object. - - # Figure out destination file name, if it wasn't already specified. - if test -n "$destname"; then - destfile="$destdir/$destname" - else - func_basename "$file" - destfile="$func_basename_result" - destfile="$destdir/$destfile" - fi - - # Deduce the name of the destination old-style object file. - case $destfile in - *.lo) - func_lo2o "$destfile" - staticdest=$func_lo2o_result - ;; - *.$objext) - staticdest="$destfile" - destfile= - ;; - *) - func_fatal_help "cannot copy a libtool object to \`$destfile'" - ;; - esac - - # Install the libtool object if requested. - test -n "$destfile" && \ - func_show_eval "$install_prog $file $destfile" 'exit $?' - - # Install the old object if enabled. - if test "$build_old_libs" = yes; then - # Deduce the name of the old-style object file. - func_lo2o "$file" - staticobj=$func_lo2o_result - func_show_eval "$install_prog \$staticobj \$staticdest" 'exit $?' - fi - exit $EXIT_SUCCESS - ;; - - *) - # Figure out destination file name, if it wasn't already specified. - if test -n "$destname"; then - destfile="$destdir/$destname" - else - func_basename "$file" - destfile="$func_basename_result" - destfile="$destdir/$destfile" - fi - - # If the file is missing, and there is a .exe on the end, strip it - # because it is most likely a libtool script we actually want to - # install - stripped_ext="" - case $file in - *.exe) - if test ! -f "$file"; then - func_stripname '' '.exe' "$file" - file=$func_stripname_result - stripped_ext=".exe" - fi - ;; - esac - - # Do a test to see if this is really a libtool program. - case $host in - *cygwin* | *mingw*) - if func_ltwrapper_executable_p "$file"; then - func_ltwrapper_scriptname "$file" - wrapper=$func_ltwrapper_scriptname_result - else - func_stripname '' '.exe' "$file" - wrapper=$func_stripname_result - fi - ;; - *) - wrapper=$file - ;; - esac - if func_ltwrapper_script_p "$wrapper"; then - notinst_deplibs= - relink_command= - - func_source "$wrapper" - - # Check the variables that should have been set. - test -z "$generated_by_libtool_version" && \ - func_fatal_error "invalid libtool wrapper script \`$wrapper'" - - finalize=yes - for lib in $notinst_deplibs; do - # Check to see that each library is installed. - libdir= - if test -f "$lib"; then - func_source "$lib" - fi - libfile="$libdir/"`$ECHO "$lib" | $SED 's%^.*/%%g'` ### testsuite: skip nested quoting test - if test -n "$libdir" && test ! -f "$libfile"; then - func_warning "\`$lib' has not been installed in \`$libdir'" - finalize=no - fi - done - - relink_command= - func_source "$wrapper" - - outputname= - if test "$fast_install" = no && test -n "$relink_command"; then - $opt_dry_run || { - if test "$finalize" = yes; then - tmpdir=`func_mktempdir` - func_basename "$file$stripped_ext" - file="$func_basename_result" - outputname="$tmpdir/$file" - # Replace the output file specification. - relink_command=`$ECHO "$relink_command" | $SED 's%@OUTPUT@%'"$outputname"'%g'` - - $opt_silent || { - func_quote_for_expand "$relink_command" - eval "func_echo $func_quote_for_expand_result" - } - if eval "$relink_command"; then : - else - func_error "error: relink \`$file' with the above command before installing it" - $opt_dry_run || ${RM}r "$tmpdir" - continue - fi - file="$outputname" - else - func_warning "cannot relink \`$file'" - fi - } - else - # Install the binary that we compiled earlier. - file=`$ECHO "$file$stripped_ext" | $SED "s%\([^/]*\)$%$objdir/\1%"` - fi - fi - - # remove .exe since cygwin /usr/bin/install will append another - # one anyway - case $install_prog,$host in - */usr/bin/install*,*cygwin*) - case $file:$destfile in - *.exe:*.exe) - # this is ok - ;; - *.exe:*) - destfile=$destfile.exe - ;; - *:*.exe) - func_stripname '' '.exe' "$destfile" - destfile=$func_stripname_result - ;; - esac - ;; - esac - func_show_eval "$install_prog\$stripme \$file \$destfile" 'exit $?' - $opt_dry_run || if test -n "$outputname"; then - ${RM}r "$tmpdir" - fi - ;; - esac - done - - for file in $staticlibs; do - func_basename "$file" - name="$func_basename_result" - - # Set up the ranlib parameters. - oldlib="$destdir/$name" - func_to_tool_file "$oldlib" func_convert_file_msys_to_w32 - tool_oldlib=$func_to_tool_file_result - - func_show_eval "$install_prog \$file \$oldlib" 'exit $?' - - if test -n "$stripme" && test -n "$old_striplib"; then - func_show_eval "$old_striplib $tool_oldlib" 'exit $?' - fi - - # Do each command in the postinstall commands. - func_execute_cmds "$old_postinstall_cmds" 'exit $?' - done - - test -n "$future_libdirs" && \ - func_warning "remember to run \`$progname --finish$future_libdirs'" - - if test -n "$current_libdirs"; then - # Maybe just do a dry run. - $opt_dry_run && current_libdirs=" -n$current_libdirs" - exec_cmd='$SHELL $progpath $preserve_args --finish$current_libdirs' - else - exit $EXIT_SUCCESS - fi -} - -test "$opt_mode" = install && func_mode_install ${1+"$@"} - - -# func_generate_dlsyms outputname originator pic_p -# Extract symbols from dlprefiles and create ${outputname}S.o with -# a dlpreopen symbol table. -func_generate_dlsyms () -{ - $opt_debug - my_outputname="$1" - my_originator="$2" - my_pic_p="${3-no}" - my_prefix=`$ECHO "$my_originator" | sed 's%[^a-zA-Z0-9]%_%g'` - my_dlsyms= - - if test -n "$dlfiles$dlprefiles" || test "$dlself" != no; then - if test -n "$NM" && test -n "$global_symbol_pipe"; then - my_dlsyms="${my_outputname}S.c" - else - func_error "not configured to extract global symbols from dlpreopened files" - fi - fi - - if test -n "$my_dlsyms"; then - case $my_dlsyms in - "") ;; - *.c) - # Discover the nlist of each of the dlfiles. - nlist="$output_objdir/${my_outputname}.nm" - - func_show_eval "$RM $nlist ${nlist}S ${nlist}T" - - # Parse the name list into a source file. - func_verbose "creating $output_objdir/$my_dlsyms" - - $opt_dry_run || $ECHO > "$output_objdir/$my_dlsyms" "\ -/* $my_dlsyms - symbol resolution table for \`$my_outputname' dlsym emulation. */ -/* Generated by $PROGRAM (GNU $PACKAGE$TIMESTAMP) $VERSION */ - -#ifdef __cplusplus -extern \"C\" { -#endif - -#if defined(__GNUC__) && (((__GNUC__ == 4) && (__GNUC_MINOR__ >= 4)) || (__GNUC__ > 4)) -#pragma GCC diagnostic ignored \"-Wstrict-prototypes\" -#endif - -/* Keep this code in sync between libtool.m4, ltmain, lt_system.h, and tests. */ -#if defined(_WIN32) || defined(__CYGWIN__) || defined(_WIN32_WCE) -/* DATA imports from DLLs on WIN32 con't be const, because runtime - relocations are performed -- see ld's documentation on pseudo-relocs. */ -# define LT_DLSYM_CONST -#elif defined(__osf__) -/* This system does not cope well with relocations in const data. */ -# define LT_DLSYM_CONST -#else -# define LT_DLSYM_CONST const -#endif - -/* External symbol declarations for the compiler. */\ -" - - if test "$dlself" = yes; then - func_verbose "generating symbol list for \`$output'" - - $opt_dry_run || echo ': @PROGRAM@ ' > "$nlist" - - # Add our own program objects to the symbol list. - progfiles=`$ECHO "$objs$old_deplibs" | $SP2NL | $SED "$lo2o" | $NL2SP` - for progfile in $progfiles; do - func_to_tool_file "$progfile" func_convert_file_msys_to_w32 - func_verbose "extracting global C symbols from \`$func_to_tool_file_result'" - $opt_dry_run || eval "$NM $func_to_tool_file_result | $global_symbol_pipe >> '$nlist'" - done - - if test -n "$exclude_expsyms"; then - $opt_dry_run || { - eval '$EGREP -v " ($exclude_expsyms)$" "$nlist" > "$nlist"T' - eval '$MV "$nlist"T "$nlist"' - } - fi - - if test -n "$export_symbols_regex"; then - $opt_dry_run || { - eval '$EGREP -e "$export_symbols_regex" "$nlist" > "$nlist"T' - eval '$MV "$nlist"T "$nlist"' - } - fi - - # Prepare the list of exported symbols - if test -z "$export_symbols"; then - export_symbols="$output_objdir/$outputname.exp" - $opt_dry_run || { - $RM $export_symbols - eval "${SED} -n -e '/^: @PROGRAM@ $/d' -e 's/^.* \(.*\)$/\1/p' "'< "$nlist" > "$export_symbols"' - case $host in - *cygwin* | *mingw* | *cegcc* ) - eval "echo EXPORTS "'> "$output_objdir/$outputname.def"' - eval 'cat "$export_symbols" >> "$output_objdir/$outputname.def"' - ;; - esac - } - else - $opt_dry_run || { - eval "${SED} -e 's/\([].[*^$]\)/\\\\\1/g' -e 's/^/ /' -e 's/$/$/'"' < "$export_symbols" > "$output_objdir/$outputname.exp"' - eval '$GREP -f "$output_objdir/$outputname.exp" < "$nlist" > "$nlist"T' - eval '$MV "$nlist"T "$nlist"' - case $host in - *cygwin* | *mingw* | *cegcc* ) - eval "echo EXPORTS "'> "$output_objdir/$outputname.def"' - eval 'cat "$nlist" >> "$output_objdir/$outputname.def"' - ;; - esac - } - fi - fi - - for dlprefile in $dlprefiles; do - func_verbose "extracting global C symbols from \`$dlprefile'" - func_basename "$dlprefile" - name="$func_basename_result" - case $host in - *cygwin* | *mingw* | *cegcc* ) - # if an import library, we need to obtain dlname - if func_win32_import_lib_p "$dlprefile"; then - func_tr_sh "$dlprefile" - eval "curr_lafile=\$libfile_$func_tr_sh_result" - dlprefile_dlbasename="" - if test -n "$curr_lafile" && func_lalib_p "$curr_lafile"; then - # Use subshell, to avoid clobbering current variable values - dlprefile_dlname=`source "$curr_lafile" && echo "$dlname"` - if test -n "$dlprefile_dlname" ; then - func_basename "$dlprefile_dlname" - dlprefile_dlbasename="$func_basename_result" - else - # no lafile. user explicitly requested -dlpreopen . - $sharedlib_from_linklib_cmd "$dlprefile" - dlprefile_dlbasename=$sharedlib_from_linklib_result - fi - fi - $opt_dry_run || { - if test -n "$dlprefile_dlbasename" ; then - eval '$ECHO ": $dlprefile_dlbasename" >> "$nlist"' - else - func_warning "Could not compute DLL name from $name" - eval '$ECHO ": $name " >> "$nlist"' - fi - func_to_tool_file "$dlprefile" func_convert_file_msys_to_w32 - eval "$NM \"$func_to_tool_file_result\" 2>/dev/null | $global_symbol_pipe | - $SED -e '/I __imp/d' -e 's/I __nm_/D /;s/_nm__//' >> '$nlist'" - } - else # not an import lib - $opt_dry_run || { - eval '$ECHO ": $name " >> "$nlist"' - func_to_tool_file "$dlprefile" func_convert_file_msys_to_w32 - eval "$NM \"$func_to_tool_file_result\" 2>/dev/null | $global_symbol_pipe >> '$nlist'" - } - fi - ;; - *) - $opt_dry_run || { - eval '$ECHO ": $name " >> "$nlist"' - func_to_tool_file "$dlprefile" func_convert_file_msys_to_w32 - eval "$NM \"$func_to_tool_file_result\" 2>/dev/null | $global_symbol_pipe >> '$nlist'" - } - ;; - esac - done - - $opt_dry_run || { - # Make sure we have at least an empty file. - test -f "$nlist" || : > "$nlist" - - if test -n "$exclude_expsyms"; then - $EGREP -v " ($exclude_expsyms)$" "$nlist" > "$nlist"T - $MV "$nlist"T "$nlist" - fi - - # Try sorting and uniquifying the output. - if $GREP -v "^: " < "$nlist" | - if sort -k 3 /dev/null 2>&1; then - sort -k 3 - else - sort +2 - fi | - uniq > "$nlist"S; then - : - else - $GREP -v "^: " < "$nlist" > "$nlist"S - fi - - if test -f "$nlist"S; then - eval "$global_symbol_to_cdecl"' < "$nlist"S >> "$output_objdir/$my_dlsyms"' - else - echo '/* NONE */' >> "$output_objdir/$my_dlsyms" - fi - - echo >> "$output_objdir/$my_dlsyms" "\ - -/* The mapping between symbol names and symbols. */ -typedef struct { - const char *name; - void *address; -} lt_dlsymlist; -extern LT_DLSYM_CONST lt_dlsymlist -lt_${my_prefix}_LTX_preloaded_symbols[]; -LT_DLSYM_CONST lt_dlsymlist -lt_${my_prefix}_LTX_preloaded_symbols[] = -{\ - { \"$my_originator\", (void *) 0 }," - - case $need_lib_prefix in - no) - eval "$global_symbol_to_c_name_address" < "$nlist" >> "$output_objdir/$my_dlsyms" - ;; - *) - eval "$global_symbol_to_c_name_address_lib_prefix" < "$nlist" >> "$output_objdir/$my_dlsyms" - ;; - esac - echo >> "$output_objdir/$my_dlsyms" "\ - {0, (void *) 0} -}; - -/* This works around a problem in FreeBSD linker */ -#ifdef FREEBSD_WORKAROUND -static const void *lt_preloaded_setup() { - return lt_${my_prefix}_LTX_preloaded_symbols; -} -#endif - -#ifdef __cplusplus -} -#endif\ -" - } # !$opt_dry_run - - pic_flag_for_symtable= - case "$compile_command " in - *" -static "*) ;; - *) - case $host in - # compiling the symbol table file with pic_flag works around - # a FreeBSD bug that causes programs to crash when -lm is - # linked before any other PIC object. But we must not use - # pic_flag when linking with -static. The problem exists in - # FreeBSD 2.2.6 and is fixed in FreeBSD 3.1. - *-*-freebsd2.*|*-*-freebsd3.0*|*-*-freebsdelf3.0*) - pic_flag_for_symtable=" $pic_flag -DFREEBSD_WORKAROUND" ;; - *-*-hpux*) - pic_flag_for_symtable=" $pic_flag" ;; - *) - if test "X$my_pic_p" != Xno; then - pic_flag_for_symtable=" $pic_flag" - fi - ;; - esac - ;; - esac - symtab_cflags= - for arg in $LTCFLAGS; do - case $arg in - -pie | -fpie | -fPIE) ;; - *) func_append symtab_cflags " $arg" ;; - esac - done - - # Now compile the dynamic symbol file. - func_show_eval '(cd $output_objdir && $LTCC$symtab_cflags -c$no_builtin_flag$pic_flag_for_symtable "$my_dlsyms")' 'exit $?' - - # Clean up the generated files. - func_show_eval '$RM "$output_objdir/$my_dlsyms" "$nlist" "${nlist}S" "${nlist}T"' - - # Transform the symbol file into the correct name. - symfileobj="$output_objdir/${my_outputname}S.$objext" - case $host in - *cygwin* | *mingw* | *cegcc* ) - if test -f "$output_objdir/$my_outputname.def"; then - compile_command=`$ECHO "$compile_command" | $SED "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"` - finalize_command=`$ECHO "$finalize_command" | $SED "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"` - else - compile_command=`$ECHO "$compile_command" | $SED "s%@SYMFILE@%$symfileobj%"` - finalize_command=`$ECHO "$finalize_command" | $SED "s%@SYMFILE@%$symfileobj%"` - fi - ;; - *) - compile_command=`$ECHO "$compile_command" | $SED "s%@SYMFILE@%$symfileobj%"` - finalize_command=`$ECHO "$finalize_command" | $SED "s%@SYMFILE@%$symfileobj%"` - ;; - esac - ;; - *) - func_fatal_error "unknown suffix for \`$my_dlsyms'" - ;; - esac - else - # We keep going just in case the user didn't refer to - # lt_preloaded_symbols. The linker will fail if global_symbol_pipe - # really was required. - - # Nullify the symbol file. - compile_command=`$ECHO "$compile_command" | $SED "s% @SYMFILE@%%"` - finalize_command=`$ECHO "$finalize_command" | $SED "s% @SYMFILE@%%"` - fi -} - -# func_win32_libid arg -# return the library type of file 'arg' -# -# Need a lot of goo to handle *both* DLLs and import libs -# Has to be a shell function in order to 'eat' the argument -# that is supplied when $file_magic_command is called. -# Despite the name, also deal with 64 bit binaries. -func_win32_libid () -{ - $opt_debug - win32_libid_type="unknown" - win32_fileres=`file -L $1 2>/dev/null` - case $win32_fileres in - *ar\ archive\ import\ library*) # definitely import - win32_libid_type="x86 archive import" - ;; - *ar\ archive*) # could be an import, or static - # Keep the egrep pattern in sync with the one in _LT_CHECK_MAGIC_METHOD. - if eval $OBJDUMP -f $1 | $SED -e '10q' 2>/dev/null | - $EGREP 'file format (pei*-i386(.*architecture: i386)?|pe-arm-wince|pe-x86-64)' >/dev/null; then - func_to_tool_file "$1" func_convert_file_msys_to_w32 - win32_nmres=`eval $NM -f posix -A \"$func_to_tool_file_result\" | - $SED -n -e ' - 1,100{ - / I /{ - s,.*,import, - p - q - } - }'` - case $win32_nmres in - import*) win32_libid_type="x86 archive import";; - *) win32_libid_type="x86 archive static";; - esac - fi - ;; - *DLL*) - win32_libid_type="x86 DLL" - ;; - *executable*) # but shell scripts are "executable" too... - case $win32_fileres in - *MS\ Windows\ PE\ Intel*) - win32_libid_type="x86 DLL" - ;; - esac - ;; - esac - $ECHO "$win32_libid_type" -} - -# func_cygming_dll_for_implib ARG -# -# Platform-specific function to extract the -# name of the DLL associated with the specified -# import library ARG. -# Invoked by eval'ing the libtool variable -# $sharedlib_from_linklib_cmd -# Result is available in the variable -# $sharedlib_from_linklib_result -func_cygming_dll_for_implib () -{ - $opt_debug - sharedlib_from_linklib_result=`$DLLTOOL --identify-strict --identify "$1"` -} - -# func_cygming_dll_for_implib_fallback_core SECTION_NAME LIBNAMEs -# -# The is the core of a fallback implementation of a -# platform-specific function to extract the name of the -# DLL associated with the specified import library LIBNAME. -# -# SECTION_NAME is either .idata$6 or .idata$7, depending -# on the platform and compiler that created the implib. -# -# Echos the name of the DLL associated with the -# specified import library. -func_cygming_dll_for_implib_fallback_core () -{ - $opt_debug - match_literal=`$ECHO "$1" | $SED "$sed_make_literal_regex"` - $OBJDUMP -s --section "$1" "$2" 2>/dev/null | - $SED '/^Contents of section '"$match_literal"':/{ - # Place marker at beginning of archive member dllname section - s/.*/====MARK====/ - p - d - } - # These lines can sometimes be longer than 43 characters, but - # are always uninteresting - /:[ ]*file format pe[i]\{,1\}-/d - /^In archive [^:]*:/d - # Ensure marker is printed - /^====MARK====/p - # Remove all lines with less than 43 characters - /^.\{43\}/!d - # From remaining lines, remove first 43 characters - s/^.\{43\}//' | - $SED -n ' - # Join marker and all lines until next marker into a single line - /^====MARK====/ b para - H - $ b para - b - :para - x - s/\n//g - # Remove the marker - s/^====MARK====// - # Remove trailing dots and whitespace - s/[\. \t]*$// - # Print - /./p' | - # we now have a list, one entry per line, of the stringified - # contents of the appropriate section of all members of the - # archive which possess that section. Heuristic: eliminate - # all those which have a first or second character that is - # a '.' (that is, objdump's representation of an unprintable - # character.) This should work for all archives with less than - # 0x302f exports -- but will fail for DLLs whose name actually - # begins with a literal '.' or a single character followed by - # a '.'. - # - # Of those that remain, print the first one. - $SED -e '/^\./d;/^.\./d;q' -} - -# func_cygming_gnu_implib_p ARG -# This predicate returns with zero status (TRUE) if -# ARG is a GNU/binutils-style import library. Returns -# with nonzero status (FALSE) otherwise. -func_cygming_gnu_implib_p () -{ - $opt_debug - func_to_tool_file "$1" func_convert_file_msys_to_w32 - func_cygming_gnu_implib_tmp=`$NM "$func_to_tool_file_result" | eval "$global_symbol_pipe" | $EGREP ' (_head_[A-Za-z0-9_]+_[ad]l*|[A-Za-z0-9_]+_[ad]l*_iname)$'` - test -n "$func_cygming_gnu_implib_tmp" -} - -# func_cygming_ms_implib_p ARG -# This predicate returns with zero status (TRUE) if -# ARG is an MS-style import library. Returns -# with nonzero status (FALSE) otherwise. -func_cygming_ms_implib_p () -{ - $opt_debug - func_to_tool_file "$1" func_convert_file_msys_to_w32 - func_cygming_ms_implib_tmp=`$NM "$func_to_tool_file_result" | eval "$global_symbol_pipe" | $GREP '_NULL_IMPORT_DESCRIPTOR'` - test -n "$func_cygming_ms_implib_tmp" -} - -# func_cygming_dll_for_implib_fallback ARG -# Platform-specific function to extract the -# name of the DLL associated with the specified -# import library ARG. -# -# This fallback implementation is for use when $DLLTOOL -# does not support the --identify-strict option. -# Invoked by eval'ing the libtool variable -# $sharedlib_from_linklib_cmd -# Result is available in the variable -# $sharedlib_from_linklib_result -func_cygming_dll_for_implib_fallback () -{ - $opt_debug - if func_cygming_gnu_implib_p "$1" ; then - # binutils import library - sharedlib_from_linklib_result=`func_cygming_dll_for_implib_fallback_core '.idata$7' "$1"` - elif func_cygming_ms_implib_p "$1" ; then - # ms-generated import library - sharedlib_from_linklib_result=`func_cygming_dll_for_implib_fallback_core '.idata$6' "$1"` - else - # unknown - sharedlib_from_linklib_result="" - fi -} - - -# func_extract_an_archive dir oldlib -func_extract_an_archive () -{ - $opt_debug - f_ex_an_ar_dir="$1"; shift - f_ex_an_ar_oldlib="$1" - if test "$lock_old_archive_extraction" = yes; then - lockfile=$f_ex_an_ar_oldlib.lock - until $opt_dry_run || ln "$progpath" "$lockfile" 2>/dev/null; do - func_echo "Waiting for $lockfile to be removed" - sleep 2 - done - fi - func_show_eval "(cd \$f_ex_an_ar_dir && $AR x \"\$f_ex_an_ar_oldlib\")" \ - 'stat=$?; rm -f "$lockfile"; exit $stat' - if test "$lock_old_archive_extraction" = yes; then - $opt_dry_run || rm -f "$lockfile" - fi - if ($AR t "$f_ex_an_ar_oldlib" | sort | sort -uc >/dev/null 2>&1); then - : - else - func_fatal_error "object name conflicts in archive: $f_ex_an_ar_dir/$f_ex_an_ar_oldlib" - fi -} - - -# func_extract_archives gentop oldlib ... -func_extract_archives () -{ - $opt_debug - my_gentop="$1"; shift - my_oldlibs=${1+"$@"} - my_oldobjs="" - my_xlib="" - my_xabs="" - my_xdir="" - - for my_xlib in $my_oldlibs; do - # Extract the objects. - case $my_xlib in - [\\/]* | [A-Za-z]:[\\/]*) my_xabs="$my_xlib" ;; - *) my_xabs=`pwd`"/$my_xlib" ;; - esac - func_basename "$my_xlib" - my_xlib="$func_basename_result" - my_xlib_u=$my_xlib - while :; do - case " $extracted_archives " in - *" $my_xlib_u "*) - func_arith $extracted_serial + 1 - extracted_serial=$func_arith_result - my_xlib_u=lt$extracted_serial-$my_xlib ;; - *) break ;; - esac - done - extracted_archives="$extracted_archives $my_xlib_u" - my_xdir="$my_gentop/$my_xlib_u" - - func_mkdir_p "$my_xdir" - - case $host in - *-darwin*) - func_verbose "Extracting $my_xabs" - # Do not bother doing anything if just a dry run - $opt_dry_run || { - darwin_orig_dir=`pwd` - cd $my_xdir || exit $? - darwin_archive=$my_xabs - darwin_curdir=`pwd` - darwin_base_archive=`basename "$darwin_archive"` - darwin_arches=`$LIPO -info "$darwin_archive" 2>/dev/null | $GREP Architectures 2>/dev/null || true` - if test -n "$darwin_arches"; then - darwin_arches=`$ECHO "$darwin_arches" | $SED -e 's/.*are://'` - darwin_arch= - func_verbose "$darwin_base_archive has multiple architectures $darwin_arches" - for darwin_arch in $darwin_arches ; do - func_mkdir_p "unfat-$$/${darwin_base_archive}-${darwin_arch}" - $LIPO -thin $darwin_arch -output "unfat-$$/${darwin_base_archive}-${darwin_arch}/${darwin_base_archive}" "${darwin_archive}" - cd "unfat-$$/${darwin_base_archive}-${darwin_arch}" - func_extract_an_archive "`pwd`" "${darwin_base_archive}" - cd "$darwin_curdir" - $RM "unfat-$$/${darwin_base_archive}-${darwin_arch}/${darwin_base_archive}" - done # $darwin_arches - ## Okay now we've a bunch of thin objects, gotta fatten them up :) - darwin_filelist=`find unfat-$$ -type f -name \*.o -print -o -name \*.lo -print | $SED -e "$basename" | sort -u` - darwin_file= - darwin_files= - for darwin_file in $darwin_filelist; do - darwin_files=`find unfat-$$ -name $darwin_file -print | sort | $NL2SP` - $LIPO -create -output "$darwin_file" $darwin_files - done # $darwin_filelist - $RM -rf unfat-$$ - cd "$darwin_orig_dir" - else - cd $darwin_orig_dir - func_extract_an_archive "$my_xdir" "$my_xabs" - fi # $darwin_arches - } # !$opt_dry_run - ;; - *) - func_extract_an_archive "$my_xdir" "$my_xabs" - ;; - esac - my_oldobjs="$my_oldobjs "`find $my_xdir -name \*.$objext -print -o -name \*.lo -print | sort | $NL2SP` - done - - func_extract_archives_result="$my_oldobjs" -} - - -# func_emit_wrapper [arg=no] -# -# Emit a libtool wrapper script on stdout. -# Don't directly open a file because we may want to -# incorporate the script contents within a cygwin/mingw -# wrapper executable. Must ONLY be called from within -# func_mode_link because it depends on a number of variables -# set therein. -# -# ARG is the value that the WRAPPER_SCRIPT_BELONGS_IN_OBJDIR -# variable will take. If 'yes', then the emitted script -# will assume that the directory in which it is stored is -# the $objdir directory. This is a cygwin/mingw-specific -# behavior. -func_emit_wrapper () -{ - func_emit_wrapper_arg1=${1-no} - - $ECHO "\ -#! $SHELL - -# $output - temporary wrapper script for $objdir/$outputname -# Generated by $PROGRAM (GNU $PACKAGE$TIMESTAMP) $VERSION -# -# The $output program cannot be directly executed until all the libtool -# libraries that it depends on are installed. -# -# This wrapper script should never be moved out of the build directory. -# If it is, it will not operate correctly. - -# Sed substitution that helps us do robust quoting. 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There is, deliberately, no --lt-help. -# -# The first argument to this parsing function should be the -# script's $0 value, followed by "$@". -lt_option_debug= -func_parse_lt_options () -{ - lt_script_arg0=\$0 - shift - for lt_opt - do - case \"\$lt_opt\" in - --lt-debug) lt_option_debug=1 ;; - --lt-dump-script) - lt_dump_D=\`\$ECHO \"X\$lt_script_arg0\" | $SED -e 's/^X//' -e 's%/[^/]*$%%'\` - test \"X\$lt_dump_D\" = \"X\$lt_script_arg0\" && lt_dump_D=. - lt_dump_F=\`\$ECHO \"X\$lt_script_arg0\" | $SED -e 's/^X//' -e 's%^.*/%%'\` - cat \"\$lt_dump_D/\$lt_dump_F\" - exit 0 - ;; - --lt-*) - \$ECHO \"Unrecognized --lt- option: '\$lt_opt'\" 1>&2 - exit 1 - ;; - esac - done - - # Print the debug banner immediately: - if test -n \"\$lt_option_debug\"; then - echo \"${outputname}:${output}:\${LINENO}: libtool wrapper (GNU $PACKAGE$TIMESTAMP) $VERSION\" 1>&2 - fi -} - -# Used when --lt-debug. Prints its arguments to stdout -# (redirection is the responsibility of the caller) -func_lt_dump_args () -{ - lt_dump_args_N=1; - for lt_arg - do - \$ECHO \"${outputname}:${output}:\${LINENO}: newargv[\$lt_dump_args_N]: \$lt_arg\" - lt_dump_args_N=\`expr \$lt_dump_args_N + 1\` - done -} - -# Core function for launching the target application -func_exec_program_core () -{ -" - case $host in - # Backslashes separate directories on plain windows - *-*-mingw | *-*-os2* | *-cegcc*) - $ECHO "\ - if test -n \"\$lt_option_debug\"; then - \$ECHO \"${outputname}:${output}:\${LINENO}: newargv[0]: \$progdir\\\\\$program\" 1>&2 - func_lt_dump_args \${1+\"\$@\"} 1>&2 - fi - exec \"\$progdir\\\\\$program\" \${1+\"\$@\"} -" - ;; - - *) - $ECHO "\ - if test -n \"\$lt_option_debug\"; then - \$ECHO \"${outputname}:${output}:\${LINENO}: newargv[0]: \$progdir/\$program\" 1>&2 - func_lt_dump_args \${1+\"\$@\"} 1>&2 - fi - exec \"\$progdir/\$program\" \${1+\"\$@\"} -" - ;; - esac - $ECHO "\ - \$ECHO \"\$0: cannot exec \$program \$*\" 1>&2 - exit 1 -} - -# A function to encapsulate launching the target application -# Strips options in the --lt-* namespace from \$@ and -# launches target application with the remaining arguments. -func_exec_program () -{ - case \" \$* \" in - *\\ --lt-*) - for lt_wr_arg - do - case \$lt_wr_arg in - --lt-*) ;; - *) set x \"\$@\" \"\$lt_wr_arg\"; shift;; - esac - shift - done ;; - esac - func_exec_program_core \${1+\"\$@\"} -} - - # Parse options - func_parse_lt_options \"\$0\" \${1+\"\$@\"} - - # Find the directory that this script lives in. - thisdir=\`\$ECHO \"\$file\" | $SED 's%/[^/]*$%%'\` - test \"x\$thisdir\" = \"x\$file\" && thisdir=. - - # Follow symbolic links until we get to the real thisdir. - file=\`ls -ld \"\$file\" | $SED -n 's/.*-> //p'\` - while test -n \"\$file\"; do - destdir=\`\$ECHO \"\$file\" | $SED 's%/[^/]*\$%%'\` - - # If there was a directory component, then change thisdir. - if test \"x\$destdir\" != \"x\$file\"; then - case \"\$destdir\" in - [\\\\/]* | [A-Za-z]:[\\\\/]*) thisdir=\"\$destdir\" ;; - *) thisdir=\"\$thisdir/\$destdir\" ;; - esac - fi - - file=\`\$ECHO \"\$file\" | $SED 's%^.*/%%'\` - file=\`ls -ld \"\$thisdir/\$file\" | $SED -n 's/.*-> //p'\` - done - - # Usually 'no', except on cygwin/mingw when embedded into - # the cwrapper. - WRAPPER_SCRIPT_BELONGS_IN_OBJDIR=$func_emit_wrapper_arg1 - if test \"\$WRAPPER_SCRIPT_BELONGS_IN_OBJDIR\" = \"yes\"; then - # special case for '.' - if test \"\$thisdir\" = \".\"; then - thisdir=\`pwd\` - fi - # remove .libs from thisdir - case \"\$thisdir\" in - *[\\\\/]$objdir ) thisdir=\`\$ECHO \"\$thisdir\" | $SED 's%[\\\\/][^\\\\/]*$%%'\` ;; - $objdir ) thisdir=. ;; - esac - fi - - # Try to get the absolute directory name. - absdir=\`cd \"\$thisdir\" && pwd\` - test -n \"\$absdir\" && thisdir=\"\$absdir\" -" - - if test "$fast_install" = yes; then - $ECHO "\ - program=lt-'$outputname'$exeext - progdir=\"\$thisdir/$objdir\" - - if test ! -f \"\$progdir/\$program\" || - { file=\`ls -1dt \"\$progdir/\$program\" \"\$progdir/../\$program\" 2>/dev/null | ${SED} 1q\`; \\ - test \"X\$file\" != \"X\$progdir/\$program\"; }; then - - file=\"\$\$-\$program\" - - if test ! -d \"\$progdir\"; then - $MKDIR \"\$progdir\" - else - $RM \"\$progdir/\$file\" - fi" - - $ECHO "\ - - # relink executable if necessary - if test -n \"\$relink_command\"; then - if relink_command_output=\`eval \$relink_command 2>&1\`; then : - else - $ECHO \"\$relink_command_output\" >&2 - $RM \"\$progdir/\$file\" - exit 1 - fi - fi - - $MV \"\$progdir/\$file\" \"\$progdir/\$program\" 2>/dev/null || - { $RM \"\$progdir/\$program\"; - $MV \"\$progdir/\$file\" \"\$progdir/\$program\"; } - $RM \"\$progdir/\$file\" - fi" - else - $ECHO "\ - program='$outputname' - progdir=\"\$thisdir/$objdir\" -" - fi - - $ECHO "\ - - if test -f \"\$progdir/\$program\"; then" - - # fixup the dll searchpath if we need to. - # - # Fix the DLL searchpath if we need to. Do this before prepending - # to shlibpath, because on Windows, both are PATH and uninstalled - # libraries must come first. - if test -n "$dllsearchpath"; then - $ECHO "\ - # Add the dll search path components to the executable PATH - PATH=$dllsearchpath:\$PATH -" - fi - - # Export our shlibpath_var if we have one. - if test "$shlibpath_overrides_runpath" = yes && test -n "$shlibpath_var" && test -n "$temp_rpath"; then - $ECHO "\ - # Add our own library path to $shlibpath_var - $shlibpath_var=\"$temp_rpath\$$shlibpath_var\" - - # Some systems cannot cope with colon-terminated $shlibpath_var - # The second colon is a workaround for a bug in BeOS R4 sed - $shlibpath_var=\`\$ECHO \"\$$shlibpath_var\" | $SED 's/::*\$//'\` - - export $shlibpath_var -" - fi - - $ECHO "\ - if test \"\$libtool_execute_magic\" != \"$magic\"; then - # Run the actual program with our arguments. - func_exec_program \${1+\"\$@\"} - fi - else - # The program doesn't exist. - \$ECHO \"\$0: error: \\\`\$progdir/\$program' does not exist\" 1>&2 - \$ECHO \"This script is just a wrapper for \$program.\" 1>&2 - \$ECHO \"See the $PACKAGE documentation for more information.\" 1>&2 - exit 1 - fi -fi\ -" -} - - -# func_emit_cwrapperexe_src -# emit the source code for a wrapper executable on stdout -# Must ONLY be called from within func_mode_link because -# it depends on a number of variable set therein. -func_emit_cwrapperexe_src () -{ - cat < -#include -#ifdef _MSC_VER -# include -# include -# include -#else -# include -# include -# ifdef __CYGWIN__ -# include -# endif -#endif -#include -#include -#include -#include -#include -#include -#include -#include - -/* declarations of non-ANSI functions */ -#if defined(__MINGW32__) -# ifdef __STRICT_ANSI__ -int _putenv (const char *); -# endif -#elif defined(__CYGWIN__) -# ifdef __STRICT_ANSI__ -char *realpath (const char *, char *); -int putenv (char *); -int setenv (const char *, const char *, int); -# endif -/* #elif defined (other platforms) ... */ -#endif - -/* portability defines, excluding path handling macros */ -#if defined(_MSC_VER) -# define setmode _setmode -# define stat _stat -# define chmod _chmod -# define getcwd _getcwd -# define putenv _putenv -# define S_IXUSR _S_IEXEC -# ifndef _INTPTR_T_DEFINED -# define _INTPTR_T_DEFINED -# define intptr_t int -# endif -#elif defined(__MINGW32__) -# define setmode _setmode -# define stat _stat -# define chmod _chmod -# define getcwd _getcwd -# define putenv _putenv -#elif defined(__CYGWIN__) -# define HAVE_SETENV -# define FOPEN_WB "wb" -/* #elif defined (other platforms) ... */ -#endif - -#if defined(PATH_MAX) -# define LT_PATHMAX PATH_MAX -#elif defined(MAXPATHLEN) -# define LT_PATHMAX MAXPATHLEN -#else -# define LT_PATHMAX 1024 -#endif - -#ifndef S_IXOTH -# define S_IXOTH 0 -#endif -#ifndef S_IXGRP -# define S_IXGRP 0 -#endif - -/* path handling portability macros */ -#ifndef DIR_SEPARATOR -# define DIR_SEPARATOR '/' -# define PATH_SEPARATOR ':' -#endif - -#if defined (_WIN32) || defined (__MSDOS__) || defined (__DJGPP__) || \ - defined (__OS2__) -# define HAVE_DOS_BASED_FILE_SYSTEM -# define FOPEN_WB "wb" -# ifndef DIR_SEPARATOR_2 -# define DIR_SEPARATOR_2 '\\' -# endif -# ifndef PATH_SEPARATOR_2 -# define PATH_SEPARATOR_2 ';' -# endif -#endif - -#ifndef DIR_SEPARATOR_2 -# define IS_DIR_SEPARATOR(ch) ((ch) == DIR_SEPARATOR) -#else /* DIR_SEPARATOR_2 */ -# define IS_DIR_SEPARATOR(ch) \ - (((ch) == DIR_SEPARATOR) || ((ch) == DIR_SEPARATOR_2)) -#endif /* DIR_SEPARATOR_2 */ - -#ifndef PATH_SEPARATOR_2 -# define IS_PATH_SEPARATOR(ch) ((ch) == PATH_SEPARATOR) -#else /* PATH_SEPARATOR_2 */ -# define IS_PATH_SEPARATOR(ch) ((ch) == PATH_SEPARATOR_2) -#endif /* PATH_SEPARATOR_2 */ - -#ifndef FOPEN_WB -# define FOPEN_WB "w" -#endif -#ifndef _O_BINARY -# define _O_BINARY 0 -#endif - -#define XMALLOC(type, num) ((type *) xmalloc ((num) * sizeof(type))) -#define XFREE(stale) do { \ - if (stale) { free ((void *) stale); stale = 0; } \ -} while (0) - -#if defined(LT_DEBUGWRAPPER) -static int lt_debug = 1; -#else -static int lt_debug = 0; -#endif - -const char *program_name = "libtool-wrapper"; /* in case xstrdup fails */ - -void *xmalloc (size_t num); -char *xstrdup (const char *string); -const char *base_name (const char *name); -char *find_executable (const char *wrapper); -char *chase_symlinks (const char *pathspec); -int make_executable (const char *path); -int check_executable (const char *path); -char *strendzap (char *str, const char *pat); -void lt_debugprintf (const char *file, int line, const char *fmt, ...); -void lt_fatal (const char *file, int line, const char *message, ...); -static const char *nonnull (const char *s); -static const char *nonempty (const char *s); -void lt_setenv (const char *name, const char *value); -char *lt_extend_str (const char *orig_value, const char *add, int to_end); -void lt_update_exe_path (const char *name, const char *value); -void lt_update_lib_path (const char *name, const char *value); -char **prepare_spawn (char **argv); -void lt_dump_script (FILE *f); -EOF - - cat <= 0) - && (st.st_mode & (S_IXUSR | S_IXGRP | S_IXOTH))) - return 1; - else - return 0; -} - -int -make_executable (const char *path) -{ - int rval = 0; - struct stat st; - - lt_debugprintf (__FILE__, __LINE__, "(make_executable): %s\n", - nonempty (path)); - if ((!path) || (!*path)) - return 0; - - if (stat (path, &st) >= 0) - { - rval = chmod (path, st.st_mode | S_IXOTH | S_IXGRP | S_IXUSR); - } - return rval; -} - -/* Searches for the full path of the wrapper. Returns - newly allocated full path name if found, NULL otherwise - Does not chase symlinks, even on platforms that support them. -*/ -char * -find_executable (const char *wrapper) -{ - int has_slash = 0; - const char *p; - const char *p_next; - /* static buffer for getcwd */ - char tmp[LT_PATHMAX + 1]; - int tmp_len; - char *concat_name; - - lt_debugprintf (__FILE__, __LINE__, "(find_executable): %s\n", - nonempty (wrapper)); - - if ((wrapper == NULL) || (*wrapper == '\0')) - return NULL; - - /* Absolute path? */ -#if defined (HAVE_DOS_BASED_FILE_SYSTEM) - if (isalpha ((unsigned char) wrapper[0]) && wrapper[1] == ':') - { - concat_name = xstrdup (wrapper); - if (check_executable (concat_name)) - return concat_name; - XFREE (concat_name); - } - else - { -#endif - if (IS_DIR_SEPARATOR (wrapper[0])) - { - concat_name = xstrdup (wrapper); - if (check_executable (concat_name)) - return concat_name; - XFREE (concat_name); - } -#if defined (HAVE_DOS_BASED_FILE_SYSTEM) - } -#endif - - for (p = wrapper; *p; p++) - if (*p == '/') - { - has_slash = 1; - break; - } - if (!has_slash) - { - /* no slashes; search PATH */ - const char *path = getenv ("PATH"); - if (path != NULL) - { - for (p = path; *p; p = p_next) - { - const char *q; - size_t p_len; - for (q = p; *q; q++) - if (IS_PATH_SEPARATOR (*q)) - break; - p_len = q - p; - p_next = (*q == '\0' ? q : q + 1); - if (p_len == 0) - { - /* empty path: current directory */ - if (getcwd (tmp, LT_PATHMAX) == NULL) - lt_fatal (__FILE__, __LINE__, "getcwd failed: %s", - nonnull (strerror (errno))); - tmp_len = strlen (tmp); - concat_name = - XMALLOC (char, tmp_len + 1 + strlen (wrapper) + 1); - memcpy (concat_name, tmp, tmp_len); - concat_name[tmp_len] = '/'; - strcpy (concat_name + tmp_len + 1, wrapper); - } - else - { - concat_name = - XMALLOC (char, p_len + 1 + strlen (wrapper) + 1); - memcpy (concat_name, p, p_len); - concat_name[p_len] = '/'; - strcpy (concat_name + p_len + 1, wrapper); - } - if (check_executable (concat_name)) - return concat_name; - XFREE (concat_name); - } - } - /* not found in PATH; assume curdir */ - } - /* Relative path | not found in path: prepend cwd */ - if (getcwd (tmp, LT_PATHMAX) == NULL) - lt_fatal (__FILE__, __LINE__, "getcwd failed: %s", - nonnull (strerror (errno))); - tmp_len = strlen (tmp); - concat_name = XMALLOC (char, tmp_len + 1 + strlen (wrapper) + 1); - memcpy (concat_name, tmp, tmp_len); - concat_name[tmp_len] = '/'; - strcpy (concat_name + tmp_len + 1, wrapper); - - if (check_executable (concat_name)) - return concat_name; - XFREE (concat_name); - return NULL; -} - -char * -chase_symlinks (const char *pathspec) -{ -#ifndef S_ISLNK - return xstrdup (pathspec); -#else - char buf[LT_PATHMAX]; - struct stat s; - char *tmp_pathspec = xstrdup (pathspec); - char *p; - int has_symlinks = 0; - while (strlen (tmp_pathspec) && !has_symlinks) - { - lt_debugprintf (__FILE__, __LINE__, - "checking path component for symlinks: %s\n", - tmp_pathspec); - if (lstat (tmp_pathspec, &s) == 0) - { - if (S_ISLNK (s.st_mode) != 0) - { - has_symlinks = 1; - break; - } - - /* search backwards for last DIR_SEPARATOR */ - p = tmp_pathspec + strlen (tmp_pathspec) - 1; - while ((p > tmp_pathspec) && (!IS_DIR_SEPARATOR (*p))) - p--; - if ((p == tmp_pathspec) && (!IS_DIR_SEPARATOR (*p))) - { - /* no more DIR_SEPARATORS left */ - break; - } - *p = '\0'; - } - else - { - lt_fatal (__FILE__, __LINE__, - "error accessing file \"%s\": %s", - tmp_pathspec, nonnull (strerror (errno))); - } - } - XFREE (tmp_pathspec); - - if (!has_symlinks) - { - return xstrdup (pathspec); - } - - tmp_pathspec = realpath (pathspec, buf); - if (tmp_pathspec == 0) - { - lt_fatal (__FILE__, __LINE__, - "could not follow symlinks for %s", pathspec); - } - return xstrdup (tmp_pathspec); -#endif -} - -char * -strendzap (char *str, const char *pat) -{ - size_t len, patlen; - - assert (str != NULL); - assert (pat != NULL); - - len = strlen (str); - patlen = strlen (pat); - - if (patlen <= len) - { - str += len - patlen; - if (strcmp (str, pat) == 0) - *str = '\0'; - } - return str; -} - -void -lt_debugprintf (const char *file, int line, const char *fmt, ...) -{ - va_list args; - if (lt_debug) - { - (void) fprintf (stderr, "%s:%s:%d: ", program_name, file, line); - va_start (args, fmt); - (void) vfprintf (stderr, fmt, args); - va_end (args); - } -} - -static void -lt_error_core (int exit_status, const char *file, - int line, const char *mode, - const char *message, va_list ap) -{ - fprintf (stderr, "%s:%s:%d: %s: ", program_name, file, line, mode); - vfprintf (stderr, message, ap); - fprintf (stderr, ".\n"); - - if (exit_status >= 0) - exit (exit_status); -} - -void -lt_fatal (const char *file, int line, const char *message, ...) -{ - va_list ap; - va_start (ap, message); - lt_error_core (EXIT_FAILURE, file, line, "FATAL", message, ap); - va_end (ap); -} - -static const char * -nonnull (const char *s) -{ - return s ? s : "(null)"; -} - -static const char * -nonempty (const char *s) -{ - return (s && !*s) ? "(empty)" : nonnull (s); -} - -void -lt_setenv (const char *name, const char *value) -{ - lt_debugprintf (__FILE__, __LINE__, - "(lt_setenv) setting '%s' to '%s'\n", - nonnull (name), nonnull (value)); - { -#ifdef HAVE_SETENV - /* always make a copy, for consistency with !HAVE_SETENV */ - char *str = xstrdup (value); - setenv (name, str, 1); -#else - int len = strlen (name) + 1 + strlen (value) + 1; - char *str = XMALLOC (char, len); - sprintf (str, "%s=%s", name, value); - if (putenv (str) != EXIT_SUCCESS) - { - XFREE (str); - } -#endif - } -} - -char * -lt_extend_str (const char *orig_value, const char *add, int to_end) -{ - char *new_value; - if (orig_value && *orig_value) - { - int orig_value_len = strlen (orig_value); - int add_len = strlen (add); - new_value = XMALLOC (char, add_len + orig_value_len + 1); - if (to_end) - { - strcpy (new_value, orig_value); - strcpy (new_value + orig_value_len, add); - } - else - { - strcpy (new_value, add); - strcpy (new_value + add_len, orig_value); - } - } - else - { - new_value = xstrdup (add); - } - return new_value; -} - -void -lt_update_exe_path (const char *name, const char *value) -{ - lt_debugprintf (__FILE__, __LINE__, - "(lt_update_exe_path) modifying '%s' by prepending '%s'\n", - nonnull (name), nonnull (value)); - - if (name && *name && value && *value) - { - char *new_value = lt_extend_str (getenv (name), value, 0); - /* some systems can't cope with a ':'-terminated path #' */ - int len = strlen (new_value); - while (((len = strlen (new_value)) > 0) && IS_PATH_SEPARATOR (new_value[len-1])) - { - new_value[len-1] = '\0'; - } - lt_setenv (name, new_value); - XFREE (new_value); - } -} - -void -lt_update_lib_path (const char *name, const char *value) -{ - lt_debugprintf (__FILE__, __LINE__, - "(lt_update_lib_path) modifying '%s' by prepending '%s'\n", - nonnull (name), nonnull (value)); - - if (name && *name && value && *value) - { - char *new_value = lt_extend_str (getenv (name), value, 0); - lt_setenv (name, new_value); - XFREE (new_value); - } -} - -EOF - case $host_os in - mingw*) - cat <<"EOF" - -/* Prepares an argument vector before calling spawn(). - Note that spawn() does not by itself call the command interpreter - (getenv ("COMSPEC") != NULL ? getenv ("COMSPEC") : - ({ OSVERSIONINFO v; v.dwOSVersionInfoSize = sizeof(OSVERSIONINFO); - GetVersionEx(&v); - v.dwPlatformId == VER_PLATFORM_WIN32_NT; - }) ? "cmd.exe" : "command.com"). - Instead it simply concatenates the arguments, separated by ' ', and calls - CreateProcess(). We must quote the arguments since Win32 CreateProcess() - interprets characters like ' ', '\t', '\\', '"' (but not '<' and '>') in a - special way: - - Space and tab are interpreted as delimiters. They are not treated as - delimiters if they are surrounded by double quotes: "...". - - Unescaped double quotes are removed from the input. Their only effect is - that within double quotes, space and tab are treated like normal - characters. - - Backslashes not followed by double quotes are not special. - - But 2*n+1 backslashes followed by a double quote become - n backslashes followed by a double quote (n >= 0): - \" -> " - \\\" -> \" - \\\\\" -> \\" - */ -#define SHELL_SPECIAL_CHARS "\"\\ \001\002\003\004\005\006\007\010\011\012\013\014\015\016\017\020\021\022\023\024\025\026\027\030\031\032\033\034\035\036\037" -#define SHELL_SPACE_CHARS " \001\002\003\004\005\006\007\010\011\012\013\014\015\016\017\020\021\022\023\024\025\026\027\030\031\032\033\034\035\036\037" -char ** -prepare_spawn (char **argv) -{ - size_t argc; - char **new_argv; - size_t i; - - /* Count number of arguments. */ - for (argc = 0; argv[argc] != NULL; argc++) - ; - - /* Allocate new argument vector. */ - new_argv = XMALLOC (char *, argc + 1); - - /* Put quoted arguments into the new argument vector. */ - for (i = 0; i < argc; i++) - { - const char *string = argv[i]; - - if (string[0] == '\0') - new_argv[i] = xstrdup ("\"\""); - else if (strpbrk (string, SHELL_SPECIAL_CHARS) != NULL) - { - int quote_around = (strpbrk (string, SHELL_SPACE_CHARS) != NULL); - size_t length; - unsigned int backslashes; - const char *s; - char *quoted_string; - char *p; - - length = 0; - backslashes = 0; - if (quote_around) - length++; - for (s = string; *s != '\0'; s++) - { - char c = *s; - if (c == '"') - length += backslashes + 1; - length++; - if (c == '\\') - backslashes++; - else - backslashes = 0; - } - if (quote_around) - length += backslashes + 1; - - quoted_string = XMALLOC (char, length + 1); - - p = quoted_string; - backslashes = 0; - if (quote_around) - *p++ = '"'; - for (s = string; *s != '\0'; s++) - { - char c = *s; - if (c == '"') - { - unsigned int j; - for (j = backslashes + 1; j > 0; j--) - *p++ = '\\'; - } - *p++ = c; - if (c == '\\') - backslashes++; - else - backslashes = 0; - } - if (quote_around) - { - unsigned int j; - for (j = backslashes; j > 0; j--) - *p++ = '\\'; - *p++ = '"'; - } - *p = '\0'; - - new_argv[i] = quoted_string; - } - else - new_argv[i] = (char *) string; - } - new_argv[argc] = NULL; - - return new_argv; -} -EOF - ;; - esac - - cat <<"EOF" -void lt_dump_script (FILE* f) -{ -EOF - func_emit_wrapper yes | - $SED -n -e ' -s/^\(.\{79\}\)\(..*\)/\1\ -\2/ -h -s/\([\\"]\)/\\\1/g -s/$/\\n/ -s/\([^\n]*\).*/ fputs ("\1", f);/p -g -D' - cat <<"EOF" -} -EOF -} -# end: func_emit_cwrapperexe_src - -# func_win32_import_lib_p ARG -# True if ARG is an import lib, as indicated by $file_magic_cmd -func_win32_import_lib_p () -{ - $opt_debug - case `eval $file_magic_cmd \"\$1\" 2>/dev/null | $SED -e 10q` in - *import*) : ;; - *) false ;; - esac -} - -# func_mode_link arg... -func_mode_link () -{ - $opt_debug - case $host in - *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*) - # It is impossible to link a dll without this setting, and - # we shouldn't force the makefile maintainer to figure out - # which system we are compiling for in order to pass an extra - # flag for every libtool invocation. - # allow_undefined=no - - # FIXME: Unfortunately, there are problems with the above when trying - # to make a dll which has undefined symbols, in which case not - # even a static library is built. For now, we need to specify - # -no-undefined on the libtool link line when we can be certain - # that all symbols are satisfied, otherwise we get a static library. - allow_undefined=yes - ;; - *) - allow_undefined=yes - ;; - esac - libtool_args=$nonopt - base_compile="$nonopt $@" - compile_command=$nonopt - finalize_command=$nonopt - - compile_rpath= - finalize_rpath= - compile_shlibpath= - finalize_shlibpath= - convenience= - old_convenience= - deplibs= - old_deplibs= - compiler_flags= - linker_flags= - dllsearchpath= - lib_search_path=`pwd` - inst_prefix_dir= - new_inherited_linker_flags= - - avoid_version=no - bindir= - dlfiles= - dlprefiles= - dlself=no - export_dynamic=no - export_symbols= - export_symbols_regex= - generated= - libobjs= - ltlibs= - module=no - no_install=no - objs= - non_pic_objects= - precious_files_regex= - prefer_static_libs=no - preload=no - prev= - prevarg= - release= - rpath= - xrpath= - perm_rpath= - temp_rpath= - thread_safe=no - vinfo= - vinfo_number=no - weak_libs= - single_module="${wl}-single_module" - func_infer_tag $base_compile - - # We need to know -static, to get the right output filenames. - for arg - do - case $arg in - -shared) - test "$build_libtool_libs" != yes && \ - func_fatal_configuration "can not build a shared library" - build_old_libs=no - break - ;; 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then - case $prev in - output) - func_append compile_command " @OUTPUT@" - func_append finalize_command " @OUTPUT@" - ;; - esac - - case $prev in - bindir) - bindir="$arg" - prev= - continue - ;; - dlfiles|dlprefiles) - if test "$preload" = no; then - # Add the symbol object into the linking commands. - func_append compile_command " @SYMFILE@" - func_append finalize_command " @SYMFILE@" - preload=yes - fi - case $arg in - *.la | *.lo) ;; # We handle these cases below. - force) - if test "$dlself" = no; then - dlself=needless - export_dynamic=yes - fi - prev= - continue - ;; - self) - if test "$prev" = dlprefiles; then - dlself=yes - elif test "$prev" = dlfiles && test "$dlopen_self" != yes; then - dlself=yes - else - dlself=needless - export_dynamic=yes - fi - prev= - continue - ;; - *) - if test "$prev" = dlfiles; then - func_append dlfiles " $arg" - else - func_append dlprefiles " $arg" - fi - prev= - continue - ;; - esac - ;; - expsyms) - export_symbols="$arg" - test -f "$arg" \ - || func_fatal_error "symbol file \`$arg' does not exist" - prev= - continue - ;; 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then - # Prepend the subdirectory the object is found in. - pic_object="$xdir$pic_object" - - if test "$prev" = dlfiles; then - if test "$build_libtool_libs" = yes && test "$dlopen_support" = yes; then - func_append dlfiles " $pic_object" - prev= - continue - else - # If libtool objects are unsupported, then we need to preload. - prev=dlprefiles - fi - fi - - # CHECK ME: I think I busted this. -Ossama - if test "$prev" = dlprefiles; then - # Preload the old-style object. - func_append dlprefiles " $pic_object" - prev= - fi - - # A PIC object. - func_append libobjs " $pic_object" - arg="$pic_object" - fi - - # Non-PIC object. - if test "$non_pic_object" != none; then - # Prepend the subdirectory the object is found in. - non_pic_object="$xdir$non_pic_object" - - # A standard non-PIC object - func_append non_pic_objects " $non_pic_object" - if test -z "$pic_object" || test "$pic_object" = none ; then - arg="$non_pic_object" - fi - else - # If the PIC object exists, use it instead. - # $xdir was prepended to $pic_object above. - non_pic_object="$pic_object" - func_append non_pic_objects " $non_pic_object" - fi - else - # Only an error if not doing a dry-run. - if $opt_dry_run; then - # Extract subdirectory from the argument. - func_dirname "$arg" "/" "" - xdir="$func_dirname_result" - - func_lo2o "$arg" - pic_object=$xdir$objdir/$func_lo2o_result - non_pic_object=$xdir$func_lo2o_result - func_append libobjs " $pic_object" - func_append non_pic_objects " $non_pic_object" - else - func_fatal_error "\`$arg' is not a valid libtool object" - fi - fi - done - else - func_fatal_error "link input file \`$arg' does not exist" - fi - arg=$save_arg - prev= - continue - ;; - precious_regex) - precious_files_regex="$arg" - prev= - continue - ;; - release) - release="-$arg" - prev= - continue - ;; - rpath | xrpath) - # We need an absolute path. - case $arg in - [\\/]* | [A-Za-z]:[\\/]*) ;; - *) - func_fatal_error "only absolute run-paths are allowed" - ;; - esac - if test "$prev" = rpath; then - case "$rpath " in - *" $arg "*) ;; - *) func_append rpath " $arg" ;; - esac - else - case "$xrpath " in - *" $arg "*) ;; - *) func_append xrpath " $arg" ;; - esac - fi - prev= - continue - ;; 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It would break on at least - # Digital Unix and AIX. - continue - ;; - - -thread-safe) - thread_safe=yes - continue - ;; - - -version-info) - prev=vinfo - continue - ;; - - -version-number) - prev=vinfo - vinfo_number=yes - continue - ;; - - -weak) - prev=weak - continue - ;; - - -Wc,*) - func_stripname '-Wc,' '' "$arg" - args=$func_stripname_result - arg= - save_ifs="$IFS"; IFS=',' - for flag in $args; do - IFS="$save_ifs" - func_quote_for_eval "$flag" - func_append arg " $func_quote_for_eval_result" - func_append compiler_flags " $func_quote_for_eval_result" - done - IFS="$save_ifs" - func_stripname ' ' '' "$arg" - arg=$func_stripname_result - ;; - - -Wl,*) - func_stripname '-Wl,' '' "$arg" - args=$func_stripname_result - arg= - save_ifs="$IFS"; IFS=',' - for flag in $args; do - IFS="$save_ifs" - func_quote_for_eval "$flag" - func_append arg " $wl$func_quote_for_eval_result" - func_append compiler_flags " $wl$func_quote_for_eval_result" - func_append linker_flags " $func_quote_for_eval_result" - done - IFS="$save_ifs" - func_stripname ' ' '' "$arg" - arg=$func_stripname_result - ;; 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then - # Preload the old-style object. - func_append dlprefiles " $pic_object" - prev= - fi - - # A PIC object. - func_append libobjs " $pic_object" - arg="$pic_object" - fi - - # Non-PIC object. - if test "$non_pic_object" != none; then - # Prepend the subdirectory the object is found in. - non_pic_object="$xdir$non_pic_object" - - # A standard non-PIC object - func_append non_pic_objects " $non_pic_object" - if test -z "$pic_object" || test "$pic_object" = none ; then - arg="$non_pic_object" - fi - else - # If the PIC object exists, use it instead. - # $xdir was prepended to $pic_object above. - non_pic_object="$pic_object" - func_append non_pic_objects " $non_pic_object" - fi - else - # Only an error if not doing a dry-run. - if $opt_dry_run; then - # Extract subdirectory from the argument. - func_dirname "$arg" "/" "" - xdir="$func_dirname_result" - - func_lo2o "$arg" - pic_object=$xdir$objdir/$func_lo2o_result - non_pic_object=$xdir$func_lo2o_result - func_append libobjs " $pic_object" - func_append non_pic_objects " $non_pic_object" - else - func_fatal_error "\`$arg' is not a valid libtool object" - fi - fi - ;; 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then - eval arg=\"$export_dynamic_flag_spec\" - func_append compile_command " $arg" - func_append finalize_command " $arg" - fi - - oldlibs= - # calculate the name of the file, without its directory - func_basename "$output" - outputname="$func_basename_result" - libobjs_save="$libobjs" - - if test -n "$shlibpath_var"; then - # get the directories listed in $shlibpath_var - eval shlib_search_path=\`\$ECHO \"\${$shlibpath_var}\" \| \$SED \'s/:/ /g\'\` - else - shlib_search_path= - fi - eval sys_lib_search_path=\"$sys_lib_search_path_spec\" - eval sys_lib_dlsearch_path=\"$sys_lib_dlsearch_path_spec\" - - func_dirname "$output" "/" "" - output_objdir="$func_dirname_result$objdir" - func_to_tool_file "$output_objdir/" - tool_output_objdir=$func_to_tool_file_result - # Create the object directory. - func_mkdir_p "$output_objdir" - - # Determine the type of output - case $output in - "") - func_fatal_help "you must specify an output file" - ;; - *.$libext) linkmode=oldlib ;; - *.lo | *.$objext) linkmode=obj ;; - *.la) linkmode=lib ;; - *) linkmode=prog ;; # Anything else should be a program. - esac - - specialdeplibs= - - libs= - # Find all interdependent deplibs by searching for libraries - # that are linked more than once (e.g. -la -lb -la) - for deplib in $deplibs; do - if $opt_preserve_dup_deps ; then - case "$libs " in - *" $deplib "*) func_append specialdeplibs " $deplib" ;; - esac - fi - func_append libs " $deplib" - done - - if test "$linkmode" = lib; then - libs="$predeps $libs $compiler_lib_search_path $postdeps" - - # Compute libraries that are listed more than once in $predeps - # $postdeps and mark them as special (i.e., whose duplicates are - # not to be eliminated). - pre_post_deps= - if $opt_duplicate_compiler_generated_deps; then - for pre_post_dep in $predeps $postdeps; do - case "$pre_post_deps " in - *" $pre_post_dep "*) func_append specialdeplibs " $pre_post_deps" ;; - esac - func_append pre_post_deps " $pre_post_dep" - done - fi - pre_post_deps= - fi - - deplibs= - newdependency_libs= - newlib_search_path= - need_relink=no # whether we're linking any uninstalled libtool libraries - notinst_deplibs= # not-installed libtool libraries - notinst_path= # paths that contain not-installed libtool libraries - - case $linkmode in - lib) - passes="conv dlpreopen link" - for file in $dlfiles $dlprefiles; do - case $file in - *.la) ;; - *) - func_fatal_help "libraries can \`-dlopen' only libtool libraries: $file" - ;; - esac - done - ;; - prog) - compile_deplibs= - finalize_deplibs= - alldeplibs=no - newdlfiles= - newdlprefiles= - passes="conv scan dlopen dlpreopen link" - ;; - *) passes="conv" - ;; - esac - - for pass in $passes; do - # The preopen pass in lib mode reverses $deplibs; put it back here - # so that -L comes before libs that need it for instance... - if test "$linkmode,$pass" = "lib,link"; then - ## FIXME: Find the place where the list is rebuilt in the wrong - ## order, and fix it there properly - tmp_deplibs= - for deplib in $deplibs; do - tmp_deplibs="$deplib $tmp_deplibs" - done - deplibs="$tmp_deplibs" - fi - - if test "$linkmode,$pass" = "lib,link" || - test "$linkmode,$pass" = "prog,scan"; then - libs="$deplibs" - deplibs= - fi - if test "$linkmode" = prog; then - case $pass in - dlopen) libs="$dlfiles" ;; - dlpreopen) libs="$dlprefiles" ;; - link) libs="$deplibs %DEPLIBS% $dependency_libs" ;; - esac - fi - if test "$linkmode,$pass" = "lib,dlpreopen"; then - # Collect and forward deplibs of preopened libtool libs - for lib in $dlprefiles; do - # Ignore non-libtool-libs - dependency_libs= - func_resolve_sysroot "$lib" - case $lib in - *.la) func_source "$func_resolve_sysroot_result" ;; - esac - - # Collect preopened libtool deplibs, except any this library - # has declared as weak libs - for deplib in $dependency_libs; do - func_basename "$deplib" - deplib_base=$func_basename_result - case " $weak_libs " in - *" $deplib_base "*) ;; - *) func_append deplibs " $deplib" ;; - esac - done - done - libs="$dlprefiles" - fi - if test "$pass" = dlopen; then - # Collect dlpreopened libraries - save_deplibs="$deplibs" - deplibs= - fi - - for deplib in $libs; do - lib= - found=no - case $deplib in - -mt|-mthreads|-kthread|-Kthread|-pthread|-pthreads|--thread-safe \ - |-threads|-fopenmp|-openmp|-mp|-xopenmp|-omp|-qsmp=*) - if test "$linkmode,$pass" = "prog,link"; then - compile_deplibs="$deplib $compile_deplibs" - finalize_deplibs="$deplib $finalize_deplibs" - else - func_append compiler_flags " $deplib" - if test "$linkmode" = lib ; then - case "$new_inherited_linker_flags " in - *" $deplib "*) ;; - * ) func_append new_inherited_linker_flags " $deplib" ;; - esac - fi - fi - continue - ;; - -l*) - if test "$linkmode" != lib && test "$linkmode" != prog; then - func_warning "\`-l' is ignored for archives/objects" - continue - fi - func_stripname '-l' '' "$deplib" - name=$func_stripname_result - if test "$linkmode" = lib; then - searchdirs="$newlib_search_path $lib_search_path $compiler_lib_search_dirs $sys_lib_search_path $shlib_search_path" - else - searchdirs="$newlib_search_path $lib_search_path $sys_lib_search_path $shlib_search_path" - fi - for searchdir in $searchdirs; do - for search_ext in .la $std_shrext .so .a; do - # Search the libtool library - lib="$searchdir/lib${name}${search_ext}" - if test -f "$lib"; then - if test "$search_ext" = ".la"; then - found=yes - else - found=no - fi - break 2 - fi - done - done - if test "$found" != yes; then - # deplib doesn't seem to be a libtool library - if test "$linkmode,$pass" = "prog,link"; then - compile_deplibs="$deplib $compile_deplibs" - finalize_deplibs="$deplib $finalize_deplibs" - else - deplibs="$deplib $deplibs" - test "$linkmode" = lib && newdependency_libs="$deplib $newdependency_libs" - fi - continue - else # deplib is a libtool library - # If $allow_libtool_libs_with_static_runtimes && $deplib is a stdlib, - # We need to do some special things here, and not later. - if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then - case " $predeps $postdeps " in - *" $deplib "*) - if func_lalib_p "$lib"; then - library_names= - old_library= - func_source "$lib" - for l in $old_library $library_names; do - ll="$l" - done - if test "X$ll" = "X$old_library" ; then # only static version available - found=no - func_dirname "$lib" "" "." - ladir="$func_dirname_result" - lib=$ladir/$old_library - if test "$linkmode,$pass" = "prog,link"; then - compile_deplibs="$deplib $compile_deplibs" - finalize_deplibs="$deplib $finalize_deplibs" - else - deplibs="$deplib $deplibs" - test "$linkmode" = lib && newdependency_libs="$deplib $newdependency_libs" - fi - continue - fi - fi - ;; - *) ;; - esac - fi - fi - ;; # -l - *.ltframework) - if test "$linkmode,$pass" = "prog,link"; then - compile_deplibs="$deplib $compile_deplibs" - finalize_deplibs="$deplib $finalize_deplibs" - else - deplibs="$deplib $deplibs" - if test "$linkmode" = lib ; then - case "$new_inherited_linker_flags " in - *" $deplib "*) ;; - * ) func_append new_inherited_linker_flags " $deplib" ;; - esac - fi - fi - continue - ;; - -L*) - case $linkmode in - lib) - deplibs="$deplib $deplibs" - test "$pass" = conv && continue - newdependency_libs="$deplib $newdependency_libs" - func_stripname '-L' '' "$deplib" - func_resolve_sysroot "$func_stripname_result" - func_append newlib_search_path " $func_resolve_sysroot_result" - ;; - prog) - if test "$pass" = conv; then - deplibs="$deplib $deplibs" - continue - fi - if test "$pass" = scan; then - deplibs="$deplib $deplibs" - else - compile_deplibs="$deplib $compile_deplibs" - finalize_deplibs="$deplib $finalize_deplibs" - fi - func_stripname '-L' '' "$deplib" - func_resolve_sysroot "$func_stripname_result" - func_append newlib_search_path " $func_resolve_sysroot_result" - ;; - *) - func_warning "\`-L' is ignored for archives/objects" - ;; - esac # linkmode - continue - ;; # -L - -R*) - if test "$pass" = link; then - func_stripname '-R' '' "$deplib" - func_resolve_sysroot "$func_stripname_result" - dir=$func_resolve_sysroot_result - # Make sure the xrpath contains only unique directories. - case "$xrpath " in - *" $dir "*) ;; - *) func_append xrpath " $dir" ;; - esac - fi - deplibs="$deplib $deplibs" - continue - ;; - *.la) - func_resolve_sysroot "$deplib" - lib=$func_resolve_sysroot_result - ;; - *.$libext) - if test "$pass" = conv; then - deplibs="$deplib $deplibs" - continue - fi - case $linkmode in - lib) - # Linking convenience modules into shared libraries is allowed, - # but linking other static libraries is non-portable. - case " $dlpreconveniencelibs " in - *" $deplib "*) ;; - *) - valid_a_lib=no - case $deplibs_check_method in - match_pattern*) - set dummy $deplibs_check_method; shift - match_pattern_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"` - if eval "\$ECHO \"$deplib\"" 2>/dev/null | $SED 10q \ - | $EGREP "$match_pattern_regex" > /dev/null; then - valid_a_lib=yes - fi - ;; - pass_all) - valid_a_lib=yes - ;; - esac - if test "$valid_a_lib" != yes; then - echo - $ECHO "*** Warning: Trying to link with static lib archive $deplib." - echo "*** I have the capability to make that library automatically link in when" - echo "*** you link to this library. But I can only do this if you have a" - echo "*** shared version of the library, which you do not appear to have" - echo "*** because the file extensions .$libext of this argument makes me believe" - echo "*** that it is just a static archive that I should not use here." - else - echo - $ECHO "*** Warning: Linking the shared library $output against the" - $ECHO "*** static library $deplib is not portable!" - deplibs="$deplib $deplibs" - fi - ;; - esac - continue - ;; - prog) - if test "$pass" != link; then - deplibs="$deplib $deplibs" - else - compile_deplibs="$deplib $compile_deplibs" - finalize_deplibs="$deplib $finalize_deplibs" - fi - continue - ;; - esac # linkmode - ;; # *.$libext - *.lo | *.$objext) - if test "$pass" = conv; then - deplibs="$deplib $deplibs" - elif test "$linkmode" = prog; then - if test "$pass" = dlpreopen || test "$dlopen_support" != yes || test "$build_libtool_libs" = no; then - # If there is no dlopen support or we're linking statically, - # we need to preload. - func_append newdlprefiles " $deplib" - compile_deplibs="$deplib $compile_deplibs" - finalize_deplibs="$deplib $finalize_deplibs" - else - func_append newdlfiles " $deplib" - fi - fi - continue - ;; - %DEPLIBS%) - alldeplibs=yes - continue - ;; - esac # case $deplib - - if test "$found" = yes || test -f "$lib"; then : - else - func_fatal_error "cannot find the library \`$lib' or unhandled argument \`$deplib'" - fi - - # Check to see that this really is a libtool archive. - func_lalib_unsafe_p "$lib" \ - || func_fatal_error "\`$lib' is not a valid libtool archive" - - func_dirname "$lib" "" "." - ladir="$func_dirname_result" - - dlname= - dlopen= - dlpreopen= - libdir= - library_names= - old_library= - inherited_linker_flags= - # If the library was installed with an old release of libtool, - # it will not redefine variables installed, or shouldnotlink - installed=yes - shouldnotlink=no - avoidtemprpath= - - - # Read the .la file - func_source "$lib" - - # Convert "-framework foo" to "foo.ltframework" - if test -n "$inherited_linker_flags"; then - tmp_inherited_linker_flags=`$ECHO "$inherited_linker_flags" | $SED 's/-framework \([^ $]*\)/\1.ltframework/g'` - for tmp_inherited_linker_flag in $tmp_inherited_linker_flags; do - case " $new_inherited_linker_flags " in - *" $tmp_inherited_linker_flag "*) ;; - *) func_append new_inherited_linker_flags " $tmp_inherited_linker_flag";; - esac - done - fi - dependency_libs=`$ECHO " $dependency_libs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` - if test "$linkmode,$pass" = "lib,link" || - test "$linkmode,$pass" = "prog,scan" || - { test "$linkmode" != prog && test "$linkmode" != lib; }; then - test -n "$dlopen" && func_append dlfiles " $dlopen" - test -n "$dlpreopen" && func_append dlprefiles " $dlpreopen" - fi - - if test "$pass" = conv; then - # Only check for convenience libraries - deplibs="$lib $deplibs" - if test -z "$libdir"; then - if test -z "$old_library"; then - func_fatal_error "cannot find name of link library for \`$lib'" - fi - # It is a libtool convenience library, so add in its objects. - func_append convenience " $ladir/$objdir/$old_library" - func_append old_convenience " $ladir/$objdir/$old_library" - elif test "$linkmode" != prog && test "$linkmode" != lib; then - func_fatal_error "\`$lib' is not a convenience library" - fi - tmp_libs= - for deplib in $dependency_libs; do - deplibs="$deplib $deplibs" - if $opt_preserve_dup_deps ; then - case "$tmp_libs " in - *" $deplib "*) func_append specialdeplibs " $deplib" ;; - esac - fi - func_append tmp_libs " $deplib" - done - continue - fi # $pass = conv - - - # Get the name of the library we link against. - linklib= - if test -n "$old_library" && - { test "$prefer_static_libs" = yes || - test "$prefer_static_libs,$installed" = "built,no"; }; then - linklib=$old_library - else - for l in $old_library $library_names; do - linklib="$l" - done - fi - if test -z "$linklib"; then - func_fatal_error "cannot find name of link library for \`$lib'" - fi - - # This library was specified with -dlopen. - if test "$pass" = dlopen; then - if test -z "$libdir"; then - func_fatal_error "cannot -dlopen a convenience library: \`$lib'" - fi - if test -z "$dlname" || - test "$dlopen_support" != yes || - test "$build_libtool_libs" = no; then - # If there is no dlname, no dlopen support or we're linking - # statically, we need to preload. We also need to preload any - # dependent libraries so libltdl's deplib preloader doesn't - # bomb out in the load deplibs phase. - func_append dlprefiles " $lib $dependency_libs" - else - func_append newdlfiles " $lib" - fi - continue - fi # $pass = dlopen - - # We need an absolute path. - case $ladir in - [\\/]* | [A-Za-z]:[\\/]*) abs_ladir="$ladir" ;; - *) - abs_ladir=`cd "$ladir" && pwd` - if test -z "$abs_ladir"; then - func_warning "cannot determine absolute directory name of \`$ladir'" - func_warning "passing it literally to the linker, although it might fail" - abs_ladir="$ladir" - fi - ;; - esac - func_basename "$lib" - laname="$func_basename_result" - - # Find the relevant object directory and library name. - if test "X$installed" = Xyes; then - if test ! -f "$lt_sysroot$libdir/$linklib" && test -f "$abs_ladir/$linklib"; then - func_warning "library \`$lib' was moved." - dir="$ladir" - absdir="$abs_ladir" - libdir="$abs_ladir" - else - dir="$lt_sysroot$libdir" - absdir="$lt_sysroot$libdir" - fi - test "X$hardcode_automatic" = Xyes && avoidtemprpath=yes - else - if test ! -f "$ladir/$objdir/$linklib" && test -f "$abs_ladir/$linklib"; then - dir="$ladir" - absdir="$abs_ladir" - # Remove this search path later - func_append notinst_path " $abs_ladir" - else - dir="$ladir/$objdir" - absdir="$abs_ladir/$objdir" - # Remove this search path later - func_append notinst_path " $abs_ladir" - fi - fi # $installed = yes - func_stripname 'lib' '.la' "$laname" - name=$func_stripname_result - - # This library was specified with -dlpreopen. - if test "$pass" = dlpreopen; then - if test -z "$libdir" && test "$linkmode" = prog; then - func_fatal_error "only libraries may -dlpreopen a convenience library: \`$lib'" - fi - case "$host" in - # special handling for platforms with PE-DLLs. - *cygwin* | *mingw* | *cegcc* ) - # Linker will automatically link against shared library if both - # static and shared are present. Therefore, ensure we extract - # symbols from the import library if a shared library is present - # (otherwise, the dlopen module name will be incorrect). We do - # this by putting the import library name into $newdlprefiles. - # We recover the dlopen module name by 'saving' the la file - # name in a special purpose variable, and (later) extracting the - # dlname from the la file. - if test -n "$dlname"; then - func_tr_sh "$dir/$linklib" - eval "libfile_$func_tr_sh_result=\$abs_ladir/\$laname" - func_append newdlprefiles " $dir/$linklib" - else - func_append newdlprefiles " $dir/$old_library" - # Keep a list of preopened convenience libraries to check - # that they are being used correctly in the link pass. - test -z "$libdir" && \ - func_append dlpreconveniencelibs " $dir/$old_library" - fi - ;; - * ) - # Prefer using a static library (so that no silly _DYNAMIC symbols - # are required to link). - if test -n "$old_library"; then - func_append newdlprefiles " $dir/$old_library" - # Keep a list of preopened convenience libraries to check - # that they are being used correctly in the link pass. - test -z "$libdir" && \ - func_append dlpreconveniencelibs " $dir/$old_library" - # Otherwise, use the dlname, so that lt_dlopen finds it. - elif test -n "$dlname"; then - func_append newdlprefiles " $dir/$dlname" - else - func_append newdlprefiles " $dir/$linklib" - fi - ;; - esac - fi # $pass = dlpreopen - - if test -z "$libdir"; then - # Link the convenience library - if test "$linkmode" = lib; then - deplibs="$dir/$old_library $deplibs" - elif test "$linkmode,$pass" = "prog,link"; then - compile_deplibs="$dir/$old_library $compile_deplibs" - finalize_deplibs="$dir/$old_library $finalize_deplibs" - else - deplibs="$lib $deplibs" # used for prog,scan pass - fi - continue - fi - - - if test "$linkmode" = prog && test "$pass" != link; then - func_append newlib_search_path " $ladir" - deplibs="$lib $deplibs" - - linkalldeplibs=no - if test "$link_all_deplibs" != no || test -z "$library_names" || - test "$build_libtool_libs" = no; then - linkalldeplibs=yes - fi - - tmp_libs= - for deplib in $dependency_libs; do - case $deplib in - -L*) func_stripname '-L' '' "$deplib" - func_resolve_sysroot "$func_stripname_result" - func_append newlib_search_path " $func_resolve_sysroot_result" - ;; - esac - # Need to link against all dependency_libs? - if test "$linkalldeplibs" = yes; then - deplibs="$deplib $deplibs" - else - # Need to hardcode shared library paths - # or/and link against static libraries - newdependency_libs="$deplib $newdependency_libs" - fi - if $opt_preserve_dup_deps ; then - case "$tmp_libs " in - *" $deplib "*) func_append specialdeplibs " $deplib" ;; - esac - fi - func_append tmp_libs " $deplib" - done # for deplib - continue - fi # $linkmode = prog... - - if test "$linkmode,$pass" = "prog,link"; then - if test -n "$library_names" && - { { test "$prefer_static_libs" = no || - test "$prefer_static_libs,$installed" = "built,yes"; } || - test -z "$old_library"; }; then - # We need to hardcode the library path - if test -n "$shlibpath_var" && test -z "$avoidtemprpath" ; then - # Make sure the rpath contains only unique directories. - case "$temp_rpath:" in - *"$absdir:"*) ;; - *) func_append temp_rpath "$absdir:" ;; - esac - fi - - # Hardcode the library path. - # Skip directories that are in the system default run-time - # search path. - case " $sys_lib_dlsearch_path " in - *" $absdir "*) ;; - *) - case "$compile_rpath " in - *" $absdir "*) ;; - *) func_append compile_rpath " $absdir" ;; - esac - ;; - esac - case " $sys_lib_dlsearch_path " in - *" $libdir "*) ;; - *) - case "$finalize_rpath " in - *" $libdir "*) ;; - *) func_append finalize_rpath " $libdir" ;; - esac - ;; - esac - fi # $linkmode,$pass = prog,link... - - if test "$alldeplibs" = yes && - { test "$deplibs_check_method" = pass_all || - { test "$build_libtool_libs" = yes && - test -n "$library_names"; }; }; then - # We only need to search for static libraries - continue - fi - fi - - link_static=no # Whether the deplib will be linked statically - use_static_libs=$prefer_static_libs - if test "$use_static_libs" = built && test "$installed" = yes; then - use_static_libs=no - fi - if test -n "$library_names" && - { test "$use_static_libs" = no || test -z "$old_library"; }; then - case $host in - *cygwin* | *mingw* | *cegcc*) - # No point in relinking DLLs because paths are not encoded - func_append notinst_deplibs " $lib" - need_relink=no - ;; - *) - if test "$installed" = no; then - func_append notinst_deplibs " $lib" - need_relink=yes - fi - ;; - esac - # This is a shared library - - # Warn about portability, can't link against -module's on some - # systems (darwin). Don't bleat about dlopened modules though! - dlopenmodule="" - for dlpremoduletest in $dlprefiles; do - if test "X$dlpremoduletest" = "X$lib"; then - dlopenmodule="$dlpremoduletest" - break - fi - done - if test -z "$dlopenmodule" && test "$shouldnotlink" = yes && test "$pass" = link; then - echo - if test "$linkmode" = prog; then - $ECHO "*** Warning: Linking the executable $output against the loadable module" - else - $ECHO "*** Warning: Linking the shared library $output against the loadable module" - fi - $ECHO "*** $linklib is not portable!" - fi - if test "$linkmode" = lib && - test "$hardcode_into_libs" = yes; then - # Hardcode the library path. - # Skip directories that are in the system default run-time - # search path. - case " $sys_lib_dlsearch_path " in - *" $absdir "*) ;; - *) - case "$compile_rpath " in - *" $absdir "*) ;; - *) func_append compile_rpath " $absdir" ;; - esac - ;; - esac - case " $sys_lib_dlsearch_path " in - *" $libdir "*) ;; - *) - case "$finalize_rpath " in - *" $libdir "*) ;; - *) func_append finalize_rpath " $libdir" ;; - esac - ;; - esac - fi - - if test -n "$old_archive_from_expsyms_cmds"; then - # figure out the soname - set dummy $library_names - shift - realname="$1" - shift - libname=`eval "\\$ECHO \"$libname_spec\""` - # use dlname if we got it. it's perfectly good, no? - if test -n "$dlname"; then - soname="$dlname" - elif test -n "$soname_spec"; then - # bleh windows - case $host in - *cygwin* | mingw* | *cegcc*) - func_arith $current - $age - major=$func_arith_result - versuffix="-$major" - ;; - esac - eval soname=\"$soname_spec\" - else - soname="$realname" - fi - - # Make a new name for the extract_expsyms_cmds to use - soroot="$soname" - func_basename "$soroot" - soname="$func_basename_result" - func_stripname 'lib' '.dll' "$soname" - newlib=libimp-$func_stripname_result.a - - # If the library has no export list, then create one now - if test -f "$output_objdir/$soname-def"; then : - else - func_verbose "extracting exported symbol list from \`$soname'" - func_execute_cmds "$extract_expsyms_cmds" 'exit $?' - fi - - # Create $newlib - if test -f "$output_objdir/$newlib"; then :; else - func_verbose "generating import library for \`$soname'" - func_execute_cmds "$old_archive_from_expsyms_cmds" 'exit $?' - fi - # make sure the library variables are pointing to the new library - dir=$output_objdir - linklib=$newlib - fi # test -n "$old_archive_from_expsyms_cmds" - - if test "$linkmode" = prog || test "$opt_mode" != relink; then - add_shlibpath= - add_dir= - add= - lib_linked=yes - case $hardcode_action in - immediate | unsupported) - if test "$hardcode_direct" = no; then - add="$dir/$linklib" - case $host in - *-*-sco3.2v5.0.[024]*) add_dir="-L$dir" ;; - *-*-sysv4*uw2*) add_dir="-L$dir" ;; - *-*-sysv5OpenUNIX* | *-*-sysv5UnixWare7.[01].[10]* | \ - *-*-unixware7*) add_dir="-L$dir" ;; - *-*-darwin* ) - # if the lib is a (non-dlopened) module then we can not - # link against it, someone is ignoring the earlier warnings - if /usr/bin/file -L $add 2> /dev/null | - $GREP ": [^:]* bundle" >/dev/null ; then - if test "X$dlopenmodule" != "X$lib"; then - $ECHO "*** Warning: lib $linklib is a module, not a shared library" - if test -z "$old_library" ; then - echo - echo "*** And there doesn't seem to be a static archive available" - echo "*** The link will probably fail, sorry" - else - add="$dir/$old_library" - fi - elif test -n "$old_library"; then - add="$dir/$old_library" - fi - fi - esac - elif test "$hardcode_minus_L" = no; then - case $host in - *-*-sunos*) add_shlibpath="$dir" ;; - esac - add_dir="-L$dir" - add="-l$name" - elif test "$hardcode_shlibpath_var" = no; then - add_shlibpath="$dir" - add="-l$name" - else - lib_linked=no - fi - ;; - relink) - if test "$hardcode_direct" = yes && - test "$hardcode_direct_absolute" = no; then - add="$dir/$linklib" - elif test "$hardcode_minus_L" = yes; then - add_dir="-L$absdir" - # Try looking first in the location we're being installed to. - if test -n "$inst_prefix_dir"; then - case $libdir in - [\\/]*) - func_append add_dir " -L$inst_prefix_dir$libdir" - ;; - esac - fi - add="-l$name" - elif test "$hardcode_shlibpath_var" = yes; then - add_shlibpath="$dir" - add="-l$name" - else - lib_linked=no - fi - ;; - *) lib_linked=no ;; - esac - - if test "$lib_linked" != yes; then - func_fatal_configuration "unsupported hardcode properties" - fi - - if test -n "$add_shlibpath"; then - case :$compile_shlibpath: in - *":$add_shlibpath:"*) ;; - *) func_append compile_shlibpath "$add_shlibpath:" ;; - esac - fi - if test "$linkmode" = prog; then - test -n "$add_dir" && compile_deplibs="$add_dir $compile_deplibs" - test -n "$add" && compile_deplibs="$add $compile_deplibs" - else - test -n "$add_dir" && deplibs="$add_dir $deplibs" - test -n "$add" && deplibs="$add $deplibs" - if test "$hardcode_direct" != yes && - test "$hardcode_minus_L" != yes && - test "$hardcode_shlibpath_var" = yes; then - case :$finalize_shlibpath: in - *":$libdir:"*) ;; - *) func_append finalize_shlibpath "$libdir:" ;; - esac - fi - fi - fi - - if test "$linkmode" = prog || test "$opt_mode" = relink; then - add_shlibpath= - add_dir= - add= - # Finalize command for both is simple: just hardcode it. - if test "$hardcode_direct" = yes && - test "$hardcode_direct_absolute" = no; then - add="$libdir/$linklib" - elif test "$hardcode_minus_L" = yes; then - add_dir="-L$libdir" - add="-l$name" - elif test "$hardcode_shlibpath_var" = yes; then - case :$finalize_shlibpath: in - *":$libdir:"*) ;; - *) func_append finalize_shlibpath "$libdir:" ;; - esac - add="-l$name" - elif test "$hardcode_automatic" = yes; then - if test -n "$inst_prefix_dir" && - test -f "$inst_prefix_dir$libdir/$linklib" ; then - add="$inst_prefix_dir$libdir/$linklib" - else - add="$libdir/$linklib" - fi - else - # We cannot seem to hardcode it, guess we'll fake it. - add_dir="-L$libdir" - # Try looking first in the location we're being installed to. - if test -n "$inst_prefix_dir"; then - case $libdir in - [\\/]*) - func_append add_dir " -L$inst_prefix_dir$libdir" - ;; - esac - fi - add="-l$name" - fi - - if test "$linkmode" = prog; then - test -n "$add_dir" && finalize_deplibs="$add_dir $finalize_deplibs" - test -n "$add" && finalize_deplibs="$add $finalize_deplibs" - else - test -n "$add_dir" && deplibs="$add_dir $deplibs" - test -n "$add" && deplibs="$add $deplibs" - fi - fi - elif test "$linkmode" = prog; then - # Here we assume that one of hardcode_direct or hardcode_minus_L - # is not unsupported. This is valid on all known static and - # shared platforms. - if test "$hardcode_direct" != unsupported; then - test -n "$old_library" && linklib="$old_library" - compile_deplibs="$dir/$linklib $compile_deplibs" - finalize_deplibs="$dir/$linklib $finalize_deplibs" - else - compile_deplibs="-l$name -L$dir $compile_deplibs" - finalize_deplibs="-l$name -L$dir $finalize_deplibs" - fi - elif test "$build_libtool_libs" = yes; then - # Not a shared library - if test "$deplibs_check_method" != pass_all; then - # We're trying link a shared library against a static one - # but the system doesn't support it. - - # Just print a warning and add the library to dependency_libs so - # that the program can be linked against the static library. - echo - $ECHO "*** Warning: This system can not link to static lib archive $lib." - echo "*** I have the capability to make that library automatically link in when" - echo "*** you link to this library. But I can only do this if you have a" - echo "*** shared version of the library, which you do not appear to have." - if test "$module" = yes; then - echo "*** But as you try to build a module library, libtool will still create " - echo "*** a static module, that should work as long as the dlopening application" - echo "*** is linked with the -dlopen flag to resolve symbols at runtime." - if test -z "$global_symbol_pipe"; then - echo - echo "*** However, this would only work if libtool was able to extract symbol" - echo "*** lists from a program, using \`nm' or equivalent, but libtool could" - echo "*** not find such a program. So, this module is probably useless." - echo "*** \`nm' from GNU binutils and a full rebuild may help." - fi - if test "$build_old_libs" = no; then - build_libtool_libs=module - build_old_libs=yes - else - build_libtool_libs=no - fi - fi - else - deplibs="$dir/$old_library $deplibs" - link_static=yes - fi - fi # link shared/static library? - - if test "$linkmode" = lib; then - if test -n "$dependency_libs" && - { test "$hardcode_into_libs" != yes || - test "$build_old_libs" = yes || - test "$link_static" = yes; }; then - # Extract -R from dependency_libs - temp_deplibs= - for libdir in $dependency_libs; do - case $libdir in - -R*) func_stripname '-R' '' "$libdir" - temp_xrpath=$func_stripname_result - case " $xrpath " in - *" $temp_xrpath "*) ;; - *) func_append xrpath " $temp_xrpath";; - esac;; - *) func_append temp_deplibs " $libdir";; - esac - done - dependency_libs="$temp_deplibs" - fi - - func_append newlib_search_path " $absdir" - # Link against this library - test "$link_static" = no && newdependency_libs="$abs_ladir/$laname $newdependency_libs" - # ... and its dependency_libs - tmp_libs= - for deplib in $dependency_libs; do - newdependency_libs="$deplib $newdependency_libs" - case $deplib in - -L*) func_stripname '-L' '' "$deplib" - func_resolve_sysroot "$func_stripname_result";; - *) func_resolve_sysroot "$deplib" ;; - esac - if $opt_preserve_dup_deps ; then - case "$tmp_libs " in - *" $func_resolve_sysroot_result "*) - func_append specialdeplibs " $func_resolve_sysroot_result" ;; - esac - fi - func_append tmp_libs " $func_resolve_sysroot_result" - done - - if test "$link_all_deplibs" != no; then - # Add the search paths of all dependency libraries - for deplib in $dependency_libs; do - path= - case $deplib in - -L*) path="$deplib" ;; - *.la) - func_resolve_sysroot "$deplib" - deplib=$func_resolve_sysroot_result - func_dirname "$deplib" "" "." - dir=$func_dirname_result - # We need an absolute path. - case $dir in - [\\/]* | [A-Za-z]:[\\/]*) absdir="$dir" ;; - *) - absdir=`cd "$dir" && pwd` - if test -z "$absdir"; then - func_warning "cannot determine absolute directory name of \`$dir'" - absdir="$dir" - fi - ;; - esac - if $GREP "^installed=no" $deplib > /dev/null; then - case $host in - *-*-darwin*) - depdepl= - eval deplibrary_names=`${SED} -n -e 's/^library_names=\(.*\)$/\1/p' $deplib` - if test -n "$deplibrary_names" ; then - for tmp in $deplibrary_names ; do - depdepl=$tmp - done - if test -f "$absdir/$objdir/$depdepl" ; then - depdepl="$absdir/$objdir/$depdepl" - darwin_install_name=`${OTOOL} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'` - if test -z "$darwin_install_name"; then - darwin_install_name=`${OTOOL64} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'` - fi - func_append compiler_flags " ${wl}-dylib_file ${wl}${darwin_install_name}:${depdepl}" - func_append linker_flags " -dylib_file ${darwin_install_name}:${depdepl}" - path= - fi - fi - ;; - *) - path="-L$absdir/$objdir" - ;; - esac - else - eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $deplib` - test -z "$libdir" && \ - func_fatal_error "\`$deplib' is not a valid libtool archive" - test "$absdir" != "$libdir" && \ - func_warning "\`$deplib' seems to be moved" - - path="-L$absdir" - fi - ;; - esac - case " $deplibs " in - *" $path "*) ;; - *) deplibs="$path $deplibs" ;; - esac - done - fi # link_all_deplibs != no - fi # linkmode = lib - done # for deplib in $libs - if test "$pass" = link; then - if test "$linkmode" = "prog"; then - compile_deplibs="$new_inherited_linker_flags $compile_deplibs" - finalize_deplibs="$new_inherited_linker_flags $finalize_deplibs" - else - compiler_flags="$compiler_flags "`$ECHO " $new_inherited_linker_flags" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` - fi - fi - dependency_libs="$newdependency_libs" - if test "$pass" = dlpreopen; then - # Link the dlpreopened libraries before other libraries - for deplib in $save_deplibs; do - deplibs="$deplib $deplibs" - done - fi - if test "$pass" != dlopen; then - if test "$pass" != conv; then - # Make sure lib_search_path contains only unique directories. - lib_search_path= - for dir in $newlib_search_path; do - case "$lib_search_path " in - *" $dir "*) ;; - *) func_append lib_search_path " $dir" ;; - esac - done - newlib_search_path= - fi - - if test "$linkmode,$pass" != "prog,link"; then - vars="deplibs" - else - vars="compile_deplibs finalize_deplibs" - fi - for var in $vars dependency_libs; do - # Add libraries to $var in reverse order - eval tmp_libs=\"\$$var\" - new_libs= - for deplib in $tmp_libs; do - # FIXME: Pedantically, this is the right thing to do, so - # that some nasty dependency loop isn't accidentally - # broken: - #new_libs="$deplib $new_libs" - # Pragmatically, this seems to cause very few problems in - # practice: - case $deplib in - -L*) new_libs="$deplib $new_libs" ;; - -R*) ;; - *) - # And here is the reason: when a library appears more - # than once as an explicit dependence of a library, or - # is implicitly linked in more than once by the - # compiler, it is considered special, and multiple - # occurrences thereof are not removed. Compare this - # with having the same library being listed as a - # dependency of multiple other libraries: in this case, - # we know (pedantically, we assume) the library does not - # need to be listed more than once, so we keep only the - # last copy. This is not always right, but it is rare - # enough that we require users that really mean to play - # such unportable linking tricks to link the library - # using -Wl,-lname, so that libtool does not consider it - # for duplicate removal. - case " $specialdeplibs " in - *" $deplib "*) new_libs="$deplib $new_libs" ;; - *) - case " $new_libs " in - *" $deplib "*) ;; - *) new_libs="$deplib $new_libs" ;; - esac - ;; - esac - ;; - esac - done - tmp_libs= - for deplib in $new_libs; do - case $deplib in - -L*) - case " $tmp_libs " in - *" $deplib "*) ;; - *) func_append tmp_libs " $deplib" ;; - esac - ;; - *) func_append tmp_libs " $deplib" ;; - esac - done - eval $var=\"$tmp_libs\" - done # for var - fi - # Last step: remove runtime libs from dependency_libs - # (they stay in deplibs) - tmp_libs= - for i in $dependency_libs ; do - case " $predeps $postdeps $compiler_lib_search_path " in - *" $i "*) - i="" - ;; - esac - if test -n "$i" ; then - func_append tmp_libs " $i" - fi - done - dependency_libs=$tmp_libs - done # for pass - if test "$linkmode" = prog; then - dlfiles="$newdlfiles" - fi - if test "$linkmode" = prog || test "$linkmode" = lib; then - dlprefiles="$newdlprefiles" - fi - - case $linkmode in - oldlib) - if test -n "$dlfiles$dlprefiles" || test "$dlself" != no; then - func_warning "\`-dlopen' is ignored for archives" - fi - - case " $deplibs" in - *\ -l* | *\ -L*) - func_warning "\`-l' and \`-L' are ignored for archives" ;; - esac - - test -n "$rpath" && \ - func_warning "\`-rpath' is ignored for archives" - - test -n "$xrpath" && \ - func_warning "\`-R' is ignored for archives" - - test -n "$vinfo" && \ - func_warning "\`-version-info/-version-number' is ignored for archives" - - test -n "$release" && \ - func_warning "\`-release' is ignored for archives" - - test -n "$export_symbols$export_symbols_regex" && \ - func_warning "\`-export-symbols' is ignored for archives" - - # Now set the variables for building old libraries. - build_libtool_libs=no - oldlibs="$output" - func_append objs "$old_deplibs" - ;; - - lib) - # Make sure we only generate libraries of the form `libNAME.la'. - case $outputname in - lib*) - func_stripname 'lib' '.la' "$outputname" - name=$func_stripname_result - eval shared_ext=\"$shrext_cmds\" - eval libname=\"$libname_spec\" - ;; - *) - test "$module" = no && \ - func_fatal_help "libtool library \`$output' must begin with \`lib'" - - if test "$need_lib_prefix" != no; then - # Add the "lib" prefix for modules if required - func_stripname '' '.la' "$outputname" - name=$func_stripname_result - eval shared_ext=\"$shrext_cmds\" - eval libname=\"$libname_spec\" - else - func_stripname '' '.la' "$outputname" - libname=$func_stripname_result - fi - ;; - esac - - if test -n "$objs"; then - if test "$deplibs_check_method" != pass_all; then - func_fatal_error "cannot build libtool library \`$output' from non-libtool objects on this host:$objs" - else - echo - $ECHO "*** Warning: Linking the shared library $output against the non-libtool" - $ECHO "*** objects $objs is not portable!" - func_append libobjs " $objs" - fi - fi - - test "$dlself" != no && \ - func_warning "\`-dlopen self' is ignored for libtool libraries" - - set dummy $rpath - shift - test "$#" -gt 1 && \ - func_warning "ignoring multiple \`-rpath's for a libtool library" - - install_libdir="$1" - - oldlibs= - if test -z "$rpath"; then - if test "$build_libtool_libs" = yes; then - # Building a libtool convenience library. - # Some compilers have problems with a `.al' extension so - # convenience libraries should have the same extension an - # archive normally would. - oldlibs="$output_objdir/$libname.$libext $oldlibs" - build_libtool_libs=convenience - build_old_libs=yes - fi - - test -n "$vinfo" && \ - func_warning "\`-version-info/-version-number' is ignored for convenience libraries" - - test -n "$release" && \ - func_warning "\`-release' is ignored for convenience libraries" - else - - # Parse the version information argument. - save_ifs="$IFS"; IFS=':' - set dummy $vinfo 0 0 0 - shift - IFS="$save_ifs" - - test -n "$7" && \ - func_fatal_help "too many parameters to \`-version-info'" - - # convert absolute version numbers to libtool ages - # this retains compatibility with .la files and attempts - # to make the code below a bit more comprehensible - - case $vinfo_number in - yes) - number_major="$1" - number_minor="$2" - number_revision="$3" - # - # There are really only two kinds -- those that - # use the current revision as the major version - # and those that subtract age and use age as - # a minor version. But, then there is irix - # which has an extra 1 added just for fun - # - case $version_type in - # correct linux to gnu/linux during the next big refactor - darwin|linux|osf|windows|none) - func_arith $number_major + $number_minor - current=$func_arith_result - age="$number_minor" - revision="$number_revision" - ;; - freebsd-aout|freebsd-elf|qnx|sunos) - current="$number_major" - revision="$number_minor" - age="0" - ;; - irix|nonstopux) - func_arith $number_major + $number_minor - current=$func_arith_result - age="$number_minor" - revision="$number_minor" - lt_irix_increment=no - ;; - esac - ;; - no) - current="$1" - revision="$2" - age="$3" - ;; - esac - - # Check that each of the things are valid numbers. - case $current in - 0|[1-9]|[1-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9][0-9][0-9]|[1-9][0-9][0-9][0-9][0-9]) ;; - *) - func_error "CURRENT \`$current' must be a nonnegative integer" - func_fatal_error "\`$vinfo' is not valid version information" - ;; - esac - - case $revision in - 0|[1-9]|[1-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9][0-9][0-9]|[1-9][0-9][0-9][0-9][0-9]) ;; - *) - func_error "REVISION \`$revision' must be a nonnegative integer" - func_fatal_error "\`$vinfo' is not valid version information" - ;; - esac - - case $age in - 0|[1-9]|[1-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9][0-9][0-9]|[1-9][0-9][0-9][0-9][0-9]) ;; - *) - func_error "AGE \`$age' must be a nonnegative integer" - func_fatal_error "\`$vinfo' is not valid version information" - ;; - esac - - if test "$age" -gt "$current"; then - func_error "AGE \`$age' is greater than the current interface number \`$current'" - func_fatal_error "\`$vinfo' is not valid version information" - fi - - # Calculate the version variables. - major= - versuffix= - verstring= - case $version_type in - none) ;; - - darwin) - # Like Linux, but with the current version available in - # verstring for coding it into the library header - func_arith $current - $age - major=.$func_arith_result - versuffix="$major.$age.$revision" - # Darwin ld doesn't like 0 for these options... - func_arith $current + 1 - minor_current=$func_arith_result - xlcverstring="${wl}-compatibility_version ${wl}$minor_current ${wl}-current_version ${wl}$minor_current.$revision" - verstring="-compatibility_version $minor_current -current_version $minor_current.$revision" - ;; 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then - major= - case $version_type in - darwin) - # we can't check for "0.0" in archive_cmds due to quoting - # problems, so we reset it completely - verstring= - ;; - *) - verstring="0.0" - ;; - esac - if test "$need_version" = no; then - versuffix= - else - versuffix=".0.0" - fi - fi - - # Remove version info from name if versioning should be avoided - if test "$avoid_version" = yes && test "$need_version" = no; then - major= - versuffix= - verstring="" - fi - - # Check to see if the archive will have undefined symbols. - if test "$allow_undefined" = yes; then - if test "$allow_undefined_flag" = unsupported; then - func_warning "undefined symbols not allowed in $host shared libraries" - build_libtool_libs=no - build_old_libs=yes - fi - else - # Don't allow undefined symbols. - allow_undefined_flag="$no_undefined_flag" - fi - - fi - - func_generate_dlsyms "$libname" "$libname" "yes" - func_append libobjs " $symfileobj" - test "X$libobjs" = "X " && libobjs= - - if test "$opt_mode" != relink; then - # Remove our outputs, but don't remove object files since they - # may have been created when compiling PIC objects. - removelist= - tempremovelist=`$ECHO "$output_objdir/*"` - for p in $tempremovelist; do - case $p in - *.$objext | *.gcno) - ;; - $output_objdir/$outputname | $output_objdir/$libname.* | $output_objdir/${libname}${release}.*) - if test "X$precious_files_regex" != "X"; then - if $ECHO "$p" | $EGREP -e "$precious_files_regex" >/dev/null 2>&1 - then - continue - fi - fi - func_append removelist " $p" - ;; - *) ;; - esac - done - test -n "$removelist" && \ - func_show_eval "${RM}r \$removelist" - fi - - # Now set the variables for building old libraries. - if test "$build_old_libs" = yes && test "$build_libtool_libs" != convenience ; then - func_append oldlibs " $output_objdir/$libname.$libext" - - # Transform .lo files to .o files. - oldobjs="$objs "`$ECHO "$libobjs" | $SP2NL | $SED "/\.${libext}$/d; $lo2o" | $NL2SP` - fi - - # Eliminate all temporary directories. - #for path in $notinst_path; do - # lib_search_path=`$ECHO "$lib_search_path " | $SED "s% $path % %g"` - # deplibs=`$ECHO "$deplibs " | $SED "s% -L$path % %g"` - # dependency_libs=`$ECHO "$dependency_libs " | $SED "s% -L$path % %g"` - #done - - if test -n "$xrpath"; then - # If the user specified any rpath flags, then add them. - temp_xrpath= - for libdir in $xrpath; do - func_replace_sysroot "$libdir" - func_append temp_xrpath " -R$func_replace_sysroot_result" - case "$finalize_rpath " in - *" $libdir "*) ;; - *) func_append finalize_rpath " $libdir" ;; - esac - done - if test "$hardcode_into_libs" != yes || test "$build_old_libs" = yes; then - dependency_libs="$temp_xrpath $dependency_libs" - fi - fi - - # Make sure dlfiles contains only unique files that won't be dlpreopened - old_dlfiles="$dlfiles" - dlfiles= - for lib in $old_dlfiles; do - case " $dlprefiles $dlfiles " in - *" $lib "*) ;; - *) func_append dlfiles " $lib" ;; - esac - done - - # Make sure dlprefiles contains only unique files - old_dlprefiles="$dlprefiles" - dlprefiles= - for lib in $old_dlprefiles; 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So, this module is probably useless." - echo "*** \`nm' from GNU binutils and a full rebuild may help." - fi - if test "$build_old_libs" = no; then - oldlibs="$output_objdir/$libname.$libext" - build_libtool_libs=module - build_old_libs=yes - else - build_libtool_libs=no - fi - else - echo "*** The inter-library dependencies that have been dropped here will be" - echo "*** automatically added whenever a program is linked with this library" - echo "*** or is declared to -dlopen it." - - if test "$allow_undefined" = no; then - echo - echo "*** Since this library must not contain undefined symbols," - echo "*** because either the platform does not support them or" - echo "*** it was explicitly requested with -no-undefined," - echo "*** libtool will only create a static version of it." - if test "$build_old_libs" = no; then - oldlibs="$output_objdir/$libname.$libext" - build_libtool_libs=module - build_old_libs=yes - else - build_libtool_libs=no - fi - fi - fi - fi - # Done checking deplibs! - deplibs=$newdeplibs - fi - # Time to change all our "foo.ltframework" stuff back to "-framework foo" - case $host in - *-*-darwin*) - newdeplibs=`$ECHO " $newdeplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` - new_inherited_linker_flags=`$ECHO " $new_inherited_linker_flags" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` - deplibs=`$ECHO " $deplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` - ;; - esac - - # move library search paths that coincide with paths to not yet - # installed libraries to the beginning of the library search list - new_libs= - for path in $notinst_path; do - case " $new_libs " in - *" -L$path/$objdir "*) ;; - *) - case " $deplibs " in - *" -L$path/$objdir "*) - func_append new_libs " -L$path/$objdir" ;; - esac - ;; - esac - done - for deplib in $deplibs; do - case $deplib in - -L*) - case " $new_libs " in - *" $deplib "*) ;; - *) func_append new_libs " $deplib" ;; - esac - ;; - *) func_append new_libs " $deplib" ;; - esac - done - deplibs="$new_libs" - - # All the library-specific variables (install_libdir is set above). - library_names= - old_library= - dlname= - - # Test again, we may have decided not to build it any more - if test "$build_libtool_libs" = yes; then - # Remove ${wl} instances when linking with ld. - # FIXME: should test the right _cmds variable. - case $archive_cmds in - *\$LD\ *) wl= ;; - esac - if test "$hardcode_into_libs" = yes; then - # Hardcode the library paths - hardcode_libdirs= - dep_rpath= - rpath="$finalize_rpath" - test "$opt_mode" != relink && rpath="$compile_rpath$rpath" - for libdir in $rpath; do - if test -n "$hardcode_libdir_flag_spec"; then - if test -n "$hardcode_libdir_separator"; then - func_replace_sysroot "$libdir" - libdir=$func_replace_sysroot_result - if test -z "$hardcode_libdirs"; then - hardcode_libdirs="$libdir" - else - # Just accumulate the unique libdirs. - case $hardcode_libdir_separator$hardcode_libdirs$hardcode_libdir_separator in - *"$hardcode_libdir_separator$libdir$hardcode_libdir_separator"*) - ;; - *) - func_append hardcode_libdirs "$hardcode_libdir_separator$libdir" - ;; - esac - fi - else - eval flag=\"$hardcode_libdir_flag_spec\" - func_append dep_rpath " $flag" - fi - elif test -n "$runpath_var"; then - case "$perm_rpath " in - *" $libdir "*) ;; - *) func_append perm_rpath " $libdir" ;; - esac - fi - done - # Substitute the hardcoded libdirs into the rpath. - if test -n "$hardcode_libdir_separator" && - test -n "$hardcode_libdirs"; then - libdir="$hardcode_libdirs" - eval "dep_rpath=\"$hardcode_libdir_flag_spec\"" - fi - if test -n "$runpath_var" && test -n "$perm_rpath"; then - # We should set the runpath_var. - rpath= - for dir in $perm_rpath; do - func_append rpath "$dir:" - done - eval "$runpath_var='$rpath\$$runpath_var'; export $runpath_var" - fi - test -n "$dep_rpath" && deplibs="$dep_rpath $deplibs" - fi - - shlibpath="$finalize_shlibpath" - test "$opt_mode" != relink && shlibpath="$compile_shlibpath$shlibpath" - if test -n "$shlibpath"; then - eval "$shlibpath_var='$shlibpath\$$shlibpath_var'; export $shlibpath_var" - fi - - # Get the real and link names of the library. - eval shared_ext=\"$shrext_cmds\" - eval library_names=\"$library_names_spec\" - set dummy $library_names - shift - realname="$1" - shift - - if test -n "$soname_spec"; then - eval soname=\"$soname_spec\" - else - soname="$realname" - fi - if test -z "$dlname"; then - dlname=$soname - fi - - lib="$output_objdir/$realname" - linknames= - for link - do - func_append linknames " $link" - done - - # Use standard objects if they are pic - test -z "$pic_flag" && libobjs=`$ECHO "$libobjs" | $SP2NL | $SED "$lo2o" | $NL2SP` - test "X$libobjs" = "X " && libobjs= - - delfiles= - if test -n "$export_symbols" && test -n "$include_expsyms"; then - $opt_dry_run || cp "$export_symbols" "$output_objdir/$libname.uexp" - export_symbols="$output_objdir/$libname.uexp" - func_append delfiles " $export_symbols" - fi - - orig_export_symbols= - case $host_os in - cygwin* | mingw* | cegcc*) - if test -n "$export_symbols" && test -z "$export_symbols_regex"; then - # exporting using user supplied symfile - if test "x`$SED 1q $export_symbols`" != xEXPORTS; then - # and it's NOT already a .def file. Must figure out - # which of the given symbols are data symbols and tag - # them as such. So, trigger use of export_symbols_cmds. - # export_symbols gets reassigned inside the "prepare - # the list of exported symbols" if statement, so the - # include_expsyms logic still works. - orig_export_symbols="$export_symbols" - export_symbols= - always_export_symbols=yes - fi - fi - ;; - esac - - # Prepare the list of exported symbols - if test -z "$export_symbols"; then - if test "$always_export_symbols" = yes || test -n "$export_symbols_regex"; then - func_verbose "generating symbol list for \`$libname.la'" - export_symbols="$output_objdir/$libname.exp" - $opt_dry_run || $RM $export_symbols - cmds=$export_symbols_cmds - save_ifs="$IFS"; IFS='~' - for cmd1 in $cmds; do - IFS="$save_ifs" - # Take the normal branch if the nm_file_list_spec branch - # doesn't work or if tool conversion is not needed. - case $nm_file_list_spec~$to_tool_file_cmd in - *~func_convert_file_noop | *~func_convert_file_msys_to_w32 | ~*) - try_normal_branch=yes - eval cmd=\"$cmd1\" - func_len " $cmd" - len=$func_len_result - ;; - *) - try_normal_branch=no - ;; - esac - if test "$try_normal_branch" = yes \ - && { test "$len" -lt "$max_cmd_len" \ - || test "$max_cmd_len" -le -1; } - then - func_show_eval "$cmd" 'exit $?' - skipped_export=false - elif test -n "$nm_file_list_spec"; then - func_basename "$output" - output_la=$func_basename_result - save_libobjs=$libobjs - save_output=$output - output=${output_objdir}/${output_la}.nm - func_to_tool_file "$output" - libobjs=$nm_file_list_spec$func_to_tool_file_result - func_append delfiles " $output" - func_verbose "creating $NM input file list: $output" - for obj in $save_libobjs; do - func_to_tool_file "$obj" - $ECHO "$func_to_tool_file_result" - done > "$output" - eval cmd=\"$cmd1\" - func_show_eval "$cmd" 'exit $?' - output=$save_output - libobjs=$save_libobjs - skipped_export=false - else - # The command line is too long to execute in one step. - func_verbose "using reloadable object file for export list..." - skipped_export=: - # Break out early, otherwise skipped_export may be - # set to false by a later but shorter cmd. - break - fi - done - IFS="$save_ifs" - if test -n "$export_symbols_regex" && test "X$skipped_export" != "X:"; then - func_show_eval '$EGREP -e "$export_symbols_regex" "$export_symbols" > "${export_symbols}T"' - func_show_eval '$MV "${export_symbols}T" "$export_symbols"' - fi - fi - fi - - if test -n "$export_symbols" && test -n "$include_expsyms"; then - tmp_export_symbols="$export_symbols" - test -n "$orig_export_symbols" && tmp_export_symbols="$orig_export_symbols" - $opt_dry_run || eval '$ECHO "$include_expsyms" | $SP2NL >> "$tmp_export_symbols"' - fi - - if test "X$skipped_export" != "X:" && test -n "$orig_export_symbols"; then - # The given exports_symbols file has to be filtered, so filter it. - func_verbose "filter symbol list for \`$libname.la' to tag DATA exports" - # FIXME: $output_objdir/$libname.filter potentially contains lots of - # 's' commands which not all seds can handle. GNU sed should be fine - # though. Also, the filter scales superlinearly with the number of - # global variables. join(1) would be nice here, but unfortunately - # isn't a blessed tool. - $opt_dry_run || $SED -e '/[ ,]DATA/!d;s,\(.*\)\([ \,].*\),s|^\1$|\1\2|,' < $export_symbols > $output_objdir/$libname.filter - func_append delfiles " $export_symbols $output_objdir/$libname.filter" - export_symbols=$output_objdir/$libname.def - $opt_dry_run || $SED -f $output_objdir/$libname.filter < $orig_export_symbols > $export_symbols - fi - - tmp_deplibs= - for test_deplib in $deplibs; do - case " $convenience " in - *" $test_deplib "*) ;; - *) - func_append tmp_deplibs " $test_deplib" - ;; - esac - done - deplibs="$tmp_deplibs" - - if test -n "$convenience"; then - if test -n "$whole_archive_flag_spec" && - test "$compiler_needs_object" = yes && - test -z "$libobjs"; then - # extract the archives, so we have objects to list. - # TODO: could optimize this to just extract one archive. - whole_archive_flag_spec= - fi - if test -n "$whole_archive_flag_spec"; then - save_libobjs=$libobjs - eval libobjs=\"\$libobjs $whole_archive_flag_spec\" - test "X$libobjs" = "X " && libobjs= - else - gentop="$output_objdir/${outputname}x" - func_append generated " $gentop" - - func_extract_archives $gentop $convenience - func_append libobjs " $func_extract_archives_result" - test "X$libobjs" = "X " && libobjs= - fi - fi - - if test "$thread_safe" = yes && test -n "$thread_safe_flag_spec"; then - eval flag=\"$thread_safe_flag_spec\" - func_append linker_flags " $flag" - fi - - # Make a backup of the uninstalled library when relinking - if test "$opt_mode" = relink; then - $opt_dry_run || eval '(cd $output_objdir && $RM ${realname}U && $MV $realname ${realname}U)' || exit $? - fi - - # Do each of the archive commands. - if test "$module" = yes && test -n "$module_cmds" ; then - if test -n "$export_symbols" && test -n "$module_expsym_cmds"; then - eval test_cmds=\"$module_expsym_cmds\" - cmds=$module_expsym_cmds - else - eval test_cmds=\"$module_cmds\" - cmds=$module_cmds - fi - else - if test -n "$export_symbols" && test -n "$archive_expsym_cmds"; then - eval test_cmds=\"$archive_expsym_cmds\" - cmds=$archive_expsym_cmds - else - eval test_cmds=\"$archive_cmds\" - cmds=$archive_cmds - fi - fi - - if test "X$skipped_export" != "X:" && - func_len " $test_cmds" && - len=$func_len_result && - test "$len" -lt "$max_cmd_len" || test "$max_cmd_len" -le -1; then - : - else - # The command line is too long to link in one step, link piecewise - # or, if using GNU ld and skipped_export is not :, use a linker - # script. - - # Save the value of $output and $libobjs because we want to - # use them later. If we have whole_archive_flag_spec, we - # want to use save_libobjs as it was before - # whole_archive_flag_spec was expanded, because we can't - # assume the linker understands whole_archive_flag_spec. - # This may have to be revisited, in case too many - # convenience libraries get linked in and end up exceeding - # the spec. - if test -z "$convenience" || test -z "$whole_archive_flag_spec"; then - save_libobjs=$libobjs - fi - save_output=$output - func_basename "$output" - output_la=$func_basename_result - - # Clear the reloadable object creation command queue and - # initialize k to one. - test_cmds= - concat_cmds= - objlist= - last_robj= - k=1 - - if test -n "$save_libobjs" && test "X$skipped_export" != "X:" && test "$with_gnu_ld" = yes; then - output=${output_objdir}/${output_la}.lnkscript - func_verbose "creating GNU ld script: $output" - echo 'INPUT (' > $output - for obj in $save_libobjs - do - func_to_tool_file "$obj" - $ECHO "$func_to_tool_file_result" >> $output - done - echo ')' >> $output - func_append delfiles " $output" - func_to_tool_file "$output" - output=$func_to_tool_file_result - elif test -n "$save_libobjs" && test "X$skipped_export" != "X:" && test "X$file_list_spec" != X; then - output=${output_objdir}/${output_la}.lnk - func_verbose "creating linker input file list: $output" - : > $output - set x $save_libobjs - shift - firstobj= - if test "$compiler_needs_object" = yes; then - firstobj="$1 " - shift - fi - for obj - do - func_to_tool_file "$obj" - $ECHO "$func_to_tool_file_result" >> $output - done - func_append delfiles " $output" - func_to_tool_file "$output" - output=$firstobj\"$file_list_spec$func_to_tool_file_result\" - else - if test -n "$save_libobjs"; then - func_verbose "creating reloadable object files..." - output=$output_objdir/$output_la-${k}.$objext - eval test_cmds=\"$reload_cmds\" - func_len " $test_cmds" - len0=$func_len_result - len=$len0 - - # Loop over the list of objects to be linked. - for obj in $save_libobjs - do - func_len " $obj" - func_arith $len + $func_len_result - len=$func_arith_result - if test "X$objlist" = X || - test "$len" -lt "$max_cmd_len"; then - func_append objlist " $obj" - else - # The command $test_cmds is almost too long, add a - # command to the queue. - if test "$k" -eq 1 ; then - # The first file doesn't have a previous command to add. - reload_objs=$objlist - eval concat_cmds=\"$reload_cmds\" - else - # All subsequent reloadable object files will link in - # the last one created. - reload_objs="$objlist $last_robj" - eval concat_cmds=\"\$concat_cmds~$reload_cmds~\$RM $last_robj\" - fi - last_robj=$output_objdir/$output_la-${k}.$objext - func_arith $k + 1 - k=$func_arith_result - output=$output_objdir/$output_la-${k}.$objext - objlist=" $obj" - func_len " $last_robj" - func_arith $len0 + $func_len_result - len=$func_arith_result - fi - done - # Handle the remaining objects by creating one last - # reloadable object file. All subsequent reloadable object - # files will link in the last one created. - test -z "$concat_cmds" || concat_cmds=$concat_cmds~ - reload_objs="$objlist $last_robj" - eval concat_cmds=\"\${concat_cmds}$reload_cmds\" - if test -n "$last_robj"; then - eval concat_cmds=\"\${concat_cmds}~\$RM $last_robj\" - fi - func_append delfiles " $output" - - else - output= - fi - - if ${skipped_export-false}; then - func_verbose "generating symbol list for \`$libname.la'" - export_symbols="$output_objdir/$libname.exp" - $opt_dry_run || $RM $export_symbols - libobjs=$output - # Append the command to create the export file. - test -z "$concat_cmds" || concat_cmds=$concat_cmds~ - eval concat_cmds=\"\$concat_cmds$export_symbols_cmds\" - if test -n "$last_robj"; then - eval concat_cmds=\"\$concat_cmds~\$RM $last_robj\" - fi - fi - - test -n "$save_libobjs" && - func_verbose "creating a temporary reloadable object file: $output" - - # Loop through the commands generated above and execute them. - save_ifs="$IFS"; IFS='~' - for cmd in $concat_cmds; do - IFS="$save_ifs" - $opt_silent || { - func_quote_for_expand "$cmd" - eval "func_echo $func_quote_for_expand_result" - } - $opt_dry_run || eval "$cmd" || { - lt_exit=$? - - # Restore the uninstalled library and exit - if test "$opt_mode" = relink; then - ( cd "$output_objdir" && \ - $RM "${realname}T" && \ - $MV "${realname}U" "$realname" ) - fi - - exit $lt_exit - } - done - IFS="$save_ifs" - - if test -n "$export_symbols_regex" && ${skipped_export-false}; then - func_show_eval '$EGREP -e "$export_symbols_regex" "$export_symbols" > "${export_symbols}T"' - func_show_eval '$MV "${export_symbols}T" "$export_symbols"' - fi - fi - - if ${skipped_export-false}; then - if test -n "$export_symbols" && test -n "$include_expsyms"; then - tmp_export_symbols="$export_symbols" - test -n "$orig_export_symbols" && tmp_export_symbols="$orig_export_symbols" - $opt_dry_run || eval '$ECHO "$include_expsyms" | $SP2NL >> "$tmp_export_symbols"' - fi - - if test -n "$orig_export_symbols"; then - # The given exports_symbols file has to be filtered, so filter it. - func_verbose "filter symbol list for \`$libname.la' to tag DATA exports" - # FIXME: $output_objdir/$libname.filter potentially contains lots of - # 's' commands which not all seds can handle. GNU sed should be fine - # though. Also, the filter scales superlinearly with the number of - # global variables. join(1) would be nice here, but unfortunately - # isn't a blessed tool. - $opt_dry_run || $SED -e '/[ ,]DATA/!d;s,\(.*\)\([ \,].*\),s|^\1$|\1\2|,' < $export_symbols > $output_objdir/$libname.filter - func_append delfiles " $export_symbols $output_objdir/$libname.filter" - export_symbols=$output_objdir/$libname.def - $opt_dry_run || $SED -f $output_objdir/$libname.filter < $orig_export_symbols > $export_symbols - fi - fi - - libobjs=$output - # Restore the value of output. - output=$save_output - - if test -n "$convenience" && test -n "$whole_archive_flag_spec"; then - eval libobjs=\"\$libobjs $whole_archive_flag_spec\" - test "X$libobjs" = "X " && libobjs= - fi - # Expand the library linking commands again to reset the - # value of $libobjs for piecewise linking. - - # Do each of the archive commands. - if test "$module" = yes && test -n "$module_cmds" ; then - if test -n "$export_symbols" && test -n "$module_expsym_cmds"; then - cmds=$module_expsym_cmds - else - cmds=$module_cmds - fi - else - if test -n "$export_symbols" && test -n "$archive_expsym_cmds"; then - cmds=$archive_expsym_cmds - else - cmds=$archive_cmds - fi - fi - fi - - if test -n "$delfiles"; then - # Append the command to remove temporary files to $cmds. - eval cmds=\"\$cmds~\$RM $delfiles\" - fi - - # Add any objects from preloaded convenience libraries - if test -n "$dlprefiles"; then - gentop="$output_objdir/${outputname}x" - func_append generated " $gentop" - - func_extract_archives $gentop $dlprefiles - func_append libobjs " $func_extract_archives_result" - test "X$libobjs" = "X " && libobjs= - fi - - save_ifs="$IFS"; IFS='~' - for cmd in $cmds; do - IFS="$save_ifs" - eval cmd=\"$cmd\" - $opt_silent || { - func_quote_for_expand "$cmd" - eval "func_echo $func_quote_for_expand_result" - } - $opt_dry_run || eval "$cmd" || { - lt_exit=$? - - # Restore the uninstalled library and exit - if test "$opt_mode" = relink; then - ( cd "$output_objdir" && \ - $RM "${realname}T" && \ - $MV "${realname}U" "$realname" ) - fi - - exit $lt_exit - } - done - IFS="$save_ifs" - - # Restore the uninstalled library and exit - if test "$opt_mode" = relink; then - $opt_dry_run || eval '(cd $output_objdir && $RM ${realname}T && $MV $realname ${realname}T && $MV ${realname}U $realname)' || exit $? - - if test -n "$convenience"; then - if test -z "$whole_archive_flag_spec"; then - func_show_eval '${RM}r "$gentop"' - fi - fi - - exit $EXIT_SUCCESS - fi - - # Create links to the real library. - for linkname in $linknames; do - if test "$realname" != "$linkname"; then - func_show_eval '(cd "$output_objdir" && $RM "$linkname" && $LN_S "$realname" "$linkname")' 'exit $?' - fi - done - - # If -module or -export-dynamic was specified, set the dlname. - if test "$module" = yes || test "$export_dynamic" = yes; then - # On all known operating systems, these are identical. - dlname="$soname" - fi - fi - ;; - - obj) - if test -n "$dlfiles$dlprefiles" || test "$dlself" != no; then - func_warning "\`-dlopen' is ignored for objects" - fi - - case " $deplibs" in - *\ -l* | *\ -L*) - func_warning "\`-l' and \`-L' are ignored for objects" ;; - esac - - test -n "$rpath" && \ - func_warning "\`-rpath' is ignored for objects" - - test -n "$xrpath" && \ - func_warning "\`-R' is ignored for objects" - - test -n "$vinfo" && \ - func_warning "\`-version-info' is ignored for objects" - - test -n "$release" && \ - func_warning "\`-release' is ignored for objects" - - case $output in - *.lo) - test -n "$objs$old_deplibs" && \ - func_fatal_error "cannot build library object \`$output' from non-libtool objects" - - libobj=$output - func_lo2o "$libobj" - obj=$func_lo2o_result - ;; - *) - libobj= - obj="$output" - ;; - esac - - # Delete the old objects. - $opt_dry_run || $RM $obj $libobj - - # Objects from convenience libraries. This assumes - # single-version convenience libraries. Whenever we create - # different ones for PIC/non-PIC, this we'll have to duplicate - # the extraction. - reload_conv_objs= - gentop= - # reload_cmds runs $LD directly, so let us get rid of - # -Wl from whole_archive_flag_spec and hope we can get by with - # turning comma into space.. - wl= - - if test -n "$convenience"; then - if test -n "$whole_archive_flag_spec"; then - eval tmp_whole_archive_flags=\"$whole_archive_flag_spec\" - reload_conv_objs=$reload_objs\ `$ECHO "$tmp_whole_archive_flags" | $SED 's|,| |g'` - else - gentop="$output_objdir/${obj}x" - func_append generated " $gentop" - - func_extract_archives $gentop $convenience - reload_conv_objs="$reload_objs $func_extract_archives_result" - fi - fi - - # If we're not building shared, we need to use non_pic_objs - test "$build_libtool_libs" != yes && libobjs="$non_pic_objects" - - # Create the old-style object. - reload_objs="$objs$old_deplibs "`$ECHO "$libobjs" | $SP2NL | $SED "/\.${libext}$/d; /\.lib$/d; $lo2o" | $NL2SP`" $reload_conv_objs" ### testsuite: skip nested quoting test - - output="$obj" - func_execute_cmds "$reload_cmds" 'exit $?' - - # Exit if we aren't doing a library object file. - if test -z "$libobj"; then - if test -n "$gentop"; then - func_show_eval '${RM}r "$gentop"' - fi - - exit $EXIT_SUCCESS - fi - - if test "$build_libtool_libs" != yes; then - if test -n "$gentop"; then - func_show_eval '${RM}r "$gentop"' - fi - - # Create an invalid libtool object if no PIC, so that we don't - # accidentally link it into a program. - # $show "echo timestamp > $libobj" - # $opt_dry_run || eval "echo timestamp > $libobj" || exit $? - exit $EXIT_SUCCESS - fi - - if test -n "$pic_flag" || test "$pic_mode" != default; then - # Only do commands if we really have different PIC objects. - reload_objs="$libobjs $reload_conv_objs" - output="$libobj" - func_execute_cmds "$reload_cmds" 'exit $?' - fi - - if test -n "$gentop"; then - func_show_eval '${RM}r "$gentop"' - fi - - exit $EXIT_SUCCESS - ;; - - prog) - case $host in - *cygwin*) func_stripname '' '.exe' "$output" - output=$func_stripname_result.exe;; - esac - test -n "$vinfo" && \ - func_warning "\`-version-info' is ignored for programs" - - test -n "$release" && \ - func_warning "\`-release' is ignored for programs" - - test "$preload" = yes \ - && test "$dlopen_support" = unknown \ - && test "$dlopen_self" = unknown \ - && test "$dlopen_self_static" = unknown && \ - func_warning "\`LT_INIT([dlopen])' not used. Assuming no dlopen support." - - case $host in - *-*-rhapsody* | *-*-darwin1.[012]) - # On Rhapsody replace the C library is the System framework - compile_deplibs=`$ECHO " $compile_deplibs" | $SED 's/ -lc / System.ltframework /'` - finalize_deplibs=`$ECHO " $finalize_deplibs" | $SED 's/ -lc / System.ltframework /'` - ;; - esac - - case $host in - *-*-darwin*) - # Don't allow lazy linking, it breaks C++ global constructors - # But is supposedly fixed on 10.4 or later (yay!). - if test "$tagname" = CXX ; then - case ${MACOSX_DEPLOYMENT_TARGET-10.0} in - 10.[0123]) - func_append compile_command " ${wl}-bind_at_load" - func_append finalize_command " ${wl}-bind_at_load" - ;; - esac - fi - # Time to change all our "foo.ltframework" stuff back to "-framework foo" - compile_deplibs=`$ECHO " $compile_deplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` - finalize_deplibs=`$ECHO " $finalize_deplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` - ;; - esac - - - # move library search paths that coincide with paths to not yet - # installed libraries to the beginning of the library search list - new_libs= - for path in $notinst_path; do - case " $new_libs " in - *" -L$path/$objdir "*) ;; - *) - case " $compile_deplibs " in - *" -L$path/$objdir "*) - func_append new_libs " -L$path/$objdir" ;; - esac - ;; - esac - done - for deplib in $compile_deplibs; do - case $deplib in - -L*) - case " $new_libs " in - *" $deplib "*) ;; - *) func_append new_libs " $deplib" ;; - esac - ;; - *) func_append new_libs " $deplib" ;; - esac - done - compile_deplibs="$new_libs" - - - func_append compile_command " $compile_deplibs" - func_append finalize_command " $finalize_deplibs" - - if test -n "$rpath$xrpath"; then - # If the user specified any rpath flags, then add them. - for libdir in $rpath $xrpath; do - # This is the magic to use -rpath. - case "$finalize_rpath " in - *" $libdir "*) ;; - *) func_append finalize_rpath " $libdir" ;; - esac - done - fi - - # Now hardcode the library paths - rpath= - hardcode_libdirs= - for libdir in $compile_rpath $finalize_rpath; do - if test -n "$hardcode_libdir_flag_spec"; then - if test -n "$hardcode_libdir_separator"; then - if test -z "$hardcode_libdirs"; then - hardcode_libdirs="$libdir" - else - # Just accumulate the unique libdirs. - case $hardcode_libdir_separator$hardcode_libdirs$hardcode_libdir_separator in - *"$hardcode_libdir_separator$libdir$hardcode_libdir_separator"*) - ;; - *) - func_append hardcode_libdirs "$hardcode_libdir_separator$libdir" - ;; - esac - fi - else - eval flag=\"$hardcode_libdir_flag_spec\" - func_append rpath " $flag" - fi - elif test -n "$runpath_var"; then - case "$perm_rpath " in - *" $libdir "*) ;; - *) func_append perm_rpath " $libdir" ;; - esac - fi - case $host in - *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*) - testbindir=`${ECHO} "$libdir" | ${SED} -e 's*/lib$*/bin*'` - case :$dllsearchpath: in - *":$libdir:"*) ;; - ::) dllsearchpath=$libdir;; - *) func_append dllsearchpath ":$libdir";; - esac - case :$dllsearchpath: in - *":$testbindir:"*) ;; - ::) dllsearchpath=$testbindir;; - *) func_append dllsearchpath ":$testbindir";; - esac - ;; - esac - done - # Substitute the hardcoded libdirs into the rpath. - if test -n "$hardcode_libdir_separator" && - test -n "$hardcode_libdirs"; then - libdir="$hardcode_libdirs" - eval rpath=\" $hardcode_libdir_flag_spec\" - fi - compile_rpath="$rpath" - - rpath= - hardcode_libdirs= - for libdir in $finalize_rpath; do - if test -n "$hardcode_libdir_flag_spec"; then - if test -n "$hardcode_libdir_separator"; then - if test -z "$hardcode_libdirs"; then - hardcode_libdirs="$libdir" - else - # Just accumulate the unique libdirs. - case $hardcode_libdir_separator$hardcode_libdirs$hardcode_libdir_separator in - *"$hardcode_libdir_separator$libdir$hardcode_libdir_separator"*) - ;; - *) - func_append hardcode_libdirs "$hardcode_libdir_separator$libdir" - ;; - esac - fi - else - eval flag=\"$hardcode_libdir_flag_spec\" - func_append rpath " $flag" - fi - elif test -n "$runpath_var"; then - case "$finalize_perm_rpath " in - *" $libdir "*) ;; - *) func_append finalize_perm_rpath " $libdir" ;; - esac - fi - done - # Substitute the hardcoded libdirs into the rpath. - if test -n "$hardcode_libdir_separator" && - test -n "$hardcode_libdirs"; then - libdir="$hardcode_libdirs" - eval rpath=\" $hardcode_libdir_flag_spec\" - fi - finalize_rpath="$rpath" - - if test -n "$libobjs" && test "$build_old_libs" = yes; then - # Transform all the library objects into standard objects. - compile_command=`$ECHO "$compile_command" | $SP2NL | $SED "$lo2o" | $NL2SP` - finalize_command=`$ECHO "$finalize_command" | $SP2NL | $SED "$lo2o" | $NL2SP` - fi - - func_generate_dlsyms "$outputname" "@PROGRAM@" "no" - - # template prelinking step - if test -n "$prelink_cmds"; then - func_execute_cmds "$prelink_cmds" 'exit $?' - fi - - wrappers_required=yes - case $host in - *cegcc* | *mingw32ce*) - # Disable wrappers for cegcc and mingw32ce hosts, we are cross compiling anyway. - wrappers_required=no - ;; - *cygwin* | *mingw* ) - if test "$build_libtool_libs" != yes; then - wrappers_required=no - fi - ;; - *) - if test "$need_relink" = no || test "$build_libtool_libs" != yes; then - wrappers_required=no - fi - ;; - esac - if test "$wrappers_required" = no; then - # Replace the output file specification. - compile_command=`$ECHO "$compile_command" | $SED 's%@OUTPUT@%'"$output"'%g'` - link_command="$compile_command$compile_rpath" - - # We have no uninstalled library dependencies, so finalize right now. - exit_status=0 - func_show_eval "$link_command" 'exit_status=$?' - - if test -n "$postlink_cmds"; then - func_to_tool_file "$output" - postlink_cmds=`func_echo_all "$postlink_cmds" | $SED -e 's%@OUTPUT@%'"$output"'%g' -e 's%@TOOL_OUTPUT@%'"$func_to_tool_file_result"'%g'` - func_execute_cmds "$postlink_cmds" 'exit $?' - fi - - # Delete the generated files. - if test -f "$output_objdir/${outputname}S.${objext}"; then - func_show_eval '$RM "$output_objdir/${outputname}S.${objext}"' - fi - - exit $exit_status - fi - - if test -n "$compile_shlibpath$finalize_shlibpath"; then - compile_command="$shlibpath_var=\"$compile_shlibpath$finalize_shlibpath\$$shlibpath_var\" $compile_command" - fi - if test -n "$finalize_shlibpath"; then - finalize_command="$shlibpath_var=\"$finalize_shlibpath\$$shlibpath_var\" $finalize_command" - fi - - compile_var= - finalize_var= - if test -n "$runpath_var"; then - if test -n "$perm_rpath"; then - # We should set the runpath_var. - rpath= - for dir in $perm_rpath; do - func_append rpath "$dir:" - done - compile_var="$runpath_var=\"$rpath\$$runpath_var\" " - fi - if test -n "$finalize_perm_rpath"; then - # We should set the runpath_var. - rpath= - for dir in $finalize_perm_rpath; do - func_append rpath "$dir:" - done - finalize_var="$runpath_var=\"$rpath\$$runpath_var\" " - fi - fi - - if test "$no_install" = yes; then - # We don't need to create a wrapper script. - link_command="$compile_var$compile_command$compile_rpath" - # Replace the output file specification. - link_command=`$ECHO "$link_command" | $SED 's%@OUTPUT@%'"$output"'%g'` - # Delete the old output file. - $opt_dry_run || $RM $output - # Link the executable and exit - func_show_eval "$link_command" 'exit $?' - - if test -n "$postlink_cmds"; then - func_to_tool_file "$output" - postlink_cmds=`func_echo_all "$postlink_cmds" | $SED -e 's%@OUTPUT@%'"$output"'%g' -e 's%@TOOL_OUTPUT@%'"$func_to_tool_file_result"'%g'` - func_execute_cmds "$postlink_cmds" 'exit $?' - fi - - exit $EXIT_SUCCESS - fi - - if test "$hardcode_action" = relink; then - # Fast installation is not supported - link_command="$compile_var$compile_command$compile_rpath" - relink_command="$finalize_var$finalize_command$finalize_rpath" - - func_warning "this platform does not like uninstalled shared libraries" - func_warning "\`$output' will be relinked during installation" - else - if test "$fast_install" != no; then - link_command="$finalize_var$compile_command$finalize_rpath" - if test "$fast_install" = yes; then - relink_command=`$ECHO "$compile_var$compile_command$compile_rpath" | $SED 's%@OUTPUT@%\$progdir/\$file%g'` - else - # fast_install is set to needless - relink_command= - fi - else - link_command="$compile_var$compile_command$compile_rpath" - relink_command="$finalize_var$finalize_command$finalize_rpath" - fi - fi - - # Replace the output file specification. - link_command=`$ECHO "$link_command" | $SED 's%@OUTPUT@%'"$output_objdir/$outputname"'%g'` - - # Delete the old output files. - $opt_dry_run || $RM $output $output_objdir/$outputname $output_objdir/lt-$outputname - - func_show_eval "$link_command" 'exit $?' - - if test -n "$postlink_cmds"; then - func_to_tool_file "$output_objdir/$outputname" - postlink_cmds=`func_echo_all "$postlink_cmds" | $SED -e 's%@OUTPUT@%'"$output_objdir/$outputname"'%g' -e 's%@TOOL_OUTPUT@%'"$func_to_tool_file_result"'%g'` - func_execute_cmds "$postlink_cmds" 'exit $?' - fi - - # Now create the wrapper script. - func_verbose "creating $output" - - # Quote the relink command for shipping. - if test -n "$relink_command"; then - # Preserve any variables that may affect compiler behavior - for var in $variables_saved_for_relink; do - if eval test -z \"\${$var+set}\"; then - relink_command="{ test -z \"\${$var+set}\" || $lt_unset $var || { $var=; export $var; }; }; $relink_command" - elif eval var_value=\$$var; test -z "$var_value"; then - relink_command="$var=; export $var; $relink_command" - else - func_quote_for_eval "$var_value" - relink_command="$var=$func_quote_for_eval_result; export $var; $relink_command" - fi - done - relink_command="(cd `pwd`; $relink_command)" - relink_command=`$ECHO "$relink_command" | $SED "$sed_quote_subst"` - fi - - # Only actually do things if not in dry run mode. - $opt_dry_run || { - # win32 will think the script is a binary if it has - # a .exe suffix, so we strip it off here. - case $output in - *.exe) func_stripname '' '.exe' "$output" - output=$func_stripname_result ;; - esac - # test for cygwin because mv fails w/o .exe extensions - case $host in - *cygwin*) - exeext=.exe - func_stripname '' '.exe' "$outputname" - outputname=$func_stripname_result ;; - *) exeext= ;; - esac - case $host in - *cygwin* | *mingw* ) - func_dirname_and_basename "$output" "" "." - output_name=$func_basename_result - output_path=$func_dirname_result - cwrappersource="$output_path/$objdir/lt-$output_name.c" - cwrapper="$output_path/$output_name.exe" - $RM $cwrappersource $cwrapper - trap "$RM $cwrappersource $cwrapper; exit $EXIT_FAILURE" 1 2 15 - - func_emit_cwrapperexe_src > $cwrappersource - - # The wrapper executable is built using the $host compiler, - # because it contains $host paths and files. If cross- - # compiling, it, like the target executable, must be - # executed on the $host or under an emulation environment. - $opt_dry_run || { - $LTCC $LTCFLAGS -o $cwrapper $cwrappersource - $STRIP $cwrapper - } - - # Now, create the wrapper script for func_source use: - func_ltwrapper_scriptname $cwrapper - $RM $func_ltwrapper_scriptname_result - trap "$RM $func_ltwrapper_scriptname_result; exit $EXIT_FAILURE" 1 2 15 - $opt_dry_run || { - # note: this script will not be executed, so do not chmod. - if test "x$build" = "x$host" ; then - $cwrapper --lt-dump-script > $func_ltwrapper_scriptname_result - else - func_emit_wrapper no > $func_ltwrapper_scriptname_result - fi - } - ;; - * ) - $RM $output - trap "$RM $output; exit $EXIT_FAILURE" 1 2 15 - - func_emit_wrapper no > $output - chmod +x $output - ;; - esac - } - exit $EXIT_SUCCESS - ;; - esac - - # See if we need to build an old-fashioned archive. - for oldlib in $oldlibs; do - - if test "$build_libtool_libs" = convenience; then - oldobjs="$libobjs_save $symfileobj" - addlibs="$convenience" - build_libtool_libs=no - else - if test "$build_libtool_libs" = module; then - oldobjs="$libobjs_save" - build_libtool_libs=no - else - oldobjs="$old_deplibs $non_pic_objects" - if test "$preload" = yes && test -f "$symfileobj"; then - func_append oldobjs " $symfileobj" - fi - fi - addlibs="$old_convenience" - fi - - if test -n "$addlibs"; then - gentop="$output_objdir/${outputname}x" - func_append generated " $gentop" - - func_extract_archives $gentop $addlibs - func_append oldobjs " $func_extract_archives_result" - fi - - # Do each command in the archive commands. - if test -n "$old_archive_from_new_cmds" && test "$build_libtool_libs" = yes; then - cmds=$old_archive_from_new_cmds - else - - # Add any objects from preloaded convenience libraries - if test -n "$dlprefiles"; then - gentop="$output_objdir/${outputname}x" - func_append generated " $gentop" - - func_extract_archives $gentop $dlprefiles - func_append oldobjs " $func_extract_archives_result" - fi - - # POSIX demands no paths to be encoded in archives. 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then - HAVE_BALANCEVELOCITY=yes - AC_DEFINE([_HAVE_BALANCEVELOCITY_],[1],[with Balancevelocity capability]) -fi -AM_CONDITIONAL([BALANCEVELOCITY], [test x$HAVE_BALANCEVELOCITY = xyes]) -AC_MSG_RESULT($HAVE_BALANCEVELOCITY) -dnl }}} -dnl with-DamageEvolution{{{ -AC_ARG_WITH([DamageEvolution], - AS_HELP_STRING([--with-DamageEvolution = YES], [compile with DamageEvolution capabilities (default is yes)]), - [DAMAGEEVOLUTION=$withval],[DAMAGEEVOLUTION=yes]) -AC_MSG_CHECKING(for DamageEvolution capability compilation) - -HAVE_DAMAGEEVOLUTION=no -if test "x$DAMAGEEVOLUTION" = "xyes"; then - HAVE_DAMAGEEVOLUTION=yes - AC_DEFINE([_HAVE_DAMAGEEVOLUTION_],[1],[with DamageEvolution capability]) -fi -AM_CONDITIONAL([DAMAGEEVOLUTION], [test x$HAVE_DAMAGEEVOLUTION = xyes]) -AC_MSG_RESULT($HAVE_DAMAGEEVOLUTION) -dnl }}} -dnl with-Debris{{{ -AC_ARG_WITH([Debris], - AS_HELP_STRING([--with-Debris = YES], [compile with Debris capabilities (default is yes)]), - [DEBRIS=$withval],[DEBRIS=yes]) -AC_MSG_CHECKING(for Debris capability compilation) - -HAVE_DEBRIS=no -if test "x$DEBRIS" = "xyes"; then - HAVE_DEBRIS=yes - AC_DEFINE([_HAVE_DEBRIS_],[1],[with Debris capability]) -fi -AM_CONDITIONAL([DEBRIS], [test x$HAVE_DEBRIS = xyes]) -AC_MSG_RESULT($HAVE_DEBRIS) -dnl }}} -dnl with-DepthAverage{{{ -AC_ARG_WITH([DepthAverage], - AS_HELP_STRING([--with-DepthAverage = YES], [compile with DepthAverage capabilities (default is yes)]), - [DEPTHAVERAGE=$withval],[DEPTHAVERAGE=yes]) -AC_MSG_CHECKING(for DepthAverage capability compilation) - -HAVE_DEPTHAVERAGE=no -if test "x$DEPTHAVERAGE" = "xyes"; then - HAVE_DEPTHAVERAGE=yes - AC_DEFINE([_HAVE_DEPTHAVERAGE_],[1],[with DepthAverage capability]) -fi -AM_CONDITIONAL([DEPTHAVERAGE], [test x$HAVE_DEPTHAVERAGE = xyes]) -AC_MSG_RESULT($HAVE_DEPTHAVERAGE) -dnl }}} -dnl with-Enthalpy{{{ -AC_ARG_WITH([Enthalpy], - AS_HELP_STRING([--with-Enthalpy = YES], [compile with Enthalpy capabilities (default is yes)]), - [ENTHALPY=$withval],[ENTHALPY=yes]) -AC_MSG_CHECKING(for Enthalpy capability compilation) - -HAVE_ENTHALPY=no -if test "x$ENTHALPY" = "xyes"; then - HAVE_ENTHALPY=yes - AC_DEFINE([_HAVE_ENTHALPY_],[1],[with Enthalpy capability]) -fi -AM_CONDITIONAL([ENTHALPY], [test x$HAVE_ENTHALPY = xyes]) -AC_MSG_RESULT($HAVE_ENTHALPY) -dnl }}} -dnl with-Esa{{{ -AC_ARG_WITH([Esa], - AS_HELP_STRING([--with-Esa = YES], [compile with Esa capabilities (default is yes)]), - [ESA=$withval],[ESA=yes]) -AC_MSG_CHECKING(for Esa capability compilation) - -HAVE_ESA=no -if test "x$ESA" = "xyes"; then - HAVE_ESA=yes - AC_DEFINE([_HAVE_ESA_],[1],[with Esa capability]) -fi -AM_CONDITIONAL([ESA], [test x$HAVE_ESA = xyes]) -AC_MSG_RESULT($HAVE_ESA) -dnl }}} -dnl with-Extrapolation{{{ -AC_ARG_WITH([Extrapolation], - AS_HELP_STRING([--with-Extrapolation = YES], [compile with Extrapolation capabilities (default is yes)]), - [EXTRAPOLATION=$withval],[EXTRAPOLATION=yes]) -AC_MSG_CHECKING(for Extrapolation capability compilation) - -HAVE_EXTRAPOLATION=no -if test "x$EXTRAPOLATION" = "xyes"; then - HAVE_EXTRAPOLATION=yes - AC_DEFINE([_HAVE_EXTRAPOLATION_],[1],[with Extrapolation capability]) -fi -AM_CONDITIONAL([EXTRAPOLATION], [test x$HAVE_EXTRAPOLATION = xyes]) -AC_MSG_RESULT($HAVE_EXTRAPOLATION) -dnl }}} -dnl with-ExtrudeFromBase{{{ -AC_ARG_WITH([ExtrudeFromBase], - AS_HELP_STRING([--with-ExtrudeFromBase = YES], [compile with ExtrudeFromBase capabilities (default is yes)]), - [EXTRUDEFROMBASE=$withval],[EXTRUDEFROMBASE=yes]) -AC_MSG_CHECKING(for ExtrudeFromBase capability compilation) - -HAVE_EXTRUDEFROMBASE=no -if test "x$EXTRUDEFROMBASE" = "xyes"; then - HAVE_EXTRUDEFROMBASE=yes - AC_DEFINE([_HAVE_EXTRUDEFROMBASE_],[1],[with ExtrudeFromBase capability]) -fi -AM_CONDITIONAL([EXTRUDEFROMBASE], [test x$HAVE_EXTRUDEFROMBASE = xyes]) -AC_MSG_RESULT($HAVE_EXTRUDEFROMBASE) -dnl }}} -dnl with-ExtrudeFromTop{{{ -AC_ARG_WITH([ExtrudeFromTop], - AS_HELP_STRING([--with-ExtrudeFromTop = YES], [compile with ExtrudeFromTop capabilities (default is yes)]), - [EXTRUDEFROMTOP=$withval],[EXTRUDEFROMTOP=yes]) -AC_MSG_CHECKING(for ExtrudeFromTop capability compilation) - -HAVE_EXTRUDEFROMTOP=no -if test "x$EXTRUDEFROMTOP" = "xyes"; then - HAVE_EXTRUDEFROMTOP=yes - AC_DEFINE([_HAVE_EXTRUDEFROMTOP_],[1],[with ExtrudeFromTop capability]) -fi -AM_CONDITIONAL([EXTRUDEFROMTOP], [test x$HAVE_EXTRUDEFROMTOP = xyes]) -AC_MSG_RESULT($HAVE_EXTRUDEFROMTOP) -dnl }}} -dnl with-FreeSurfaceBase{{{ -AC_ARG_WITH([FreeSurfaceBase], - AS_HELP_STRING([--with-FreeSurfaceBase = YES], [compile with FreeSurfaceBase capabilities (default is yes)]), - [FREESURFACEBASE=$withval],[FREESURFACEBASE=yes]) -AC_MSG_CHECKING(for FreeSurfaceBase capability compilation) - -HAVE_FREESURFACEBASE=no -if test "x$FREESURFACEBASE" = "xyes"; then - HAVE_FREESURFACEBASE=yes - AC_DEFINE([_HAVE_FREESURFACEBASE_],[1],[with FreeSurfaceBase capability]) -fi -AM_CONDITIONAL([FREESURFACEBASE], [test x$HAVE_FREESURFACEBASE = xyes]) -AC_MSG_RESULT($HAVE_FREESURFACEBASE) -dnl }}} -dnl with-FreeSurfaceTop{{{ -AC_ARG_WITH([FreeSurfaceTop], - AS_HELP_STRING([--with-FreeSurfaceTop = YES], [compile with FreeSurfaceTop capabilities (default is yes)]), - [FREESURFACETOP=$withval],[FREESURFACETOP=yes]) -AC_MSG_CHECKING(for FreeSurfaceTop capability compilation) - -HAVE_FREESURFACETOP=no -if test "x$FREESURFACETOP" = "xyes"; then - HAVE_FREESURFACETOP=yes - AC_DEFINE([_HAVE_FREESURFACETOP_],[1],[with FreeSurfaceTop capability]) -fi -AM_CONDITIONAL([FREESURFACETOP], [test x$HAVE_FREESURFACETOP = xyes]) -AC_MSG_RESULT($HAVE_FREESURFACETOP) -dnl }}} -dnl with-GLheightadvection{{{ -AC_ARG_WITH([GLheightadvection], - AS_HELP_STRING([--with-GLheightadvection = YES], [compile with GLheightadvection capabilities (default is yes)]), - [GLHEIGHTADVECTION=$withval],[GLHEIGHTADVECTION=yes]) -AC_MSG_CHECKING(for GLheightadvection capability compilation) - -HAVE_GLHEIGHTADVECTION=no -if test "x$GLHEIGHTADVECTION" = "xyes"; then - HAVE_GLHEIGHTADVECTION=yes - AC_DEFINE([_HAVE_GLHEIGHTADVECTION_],[1],[with GLheightadvection capability]) -fi -AM_CONDITIONAL([GLHEIGHTADVECTION], [test x$HAVE_GLHEIGHTADVECTION = xyes]) -AC_MSG_RESULT($HAVE_GLHEIGHTADVECTION) -dnl }}} -dnl with-HydrologyDCEfficient{{{ -AC_ARG_WITH([HydrologyDCEfficient], - AS_HELP_STRING([--with-HydrologyDCEfficient = YES], [compile with HydrologyDCEfficient capabilities (default is yes)]), - [HYDROLOGYDCEFFICIENT=$withval],[HYDROLOGYDCEFFICIENT=yes]) -AC_MSG_CHECKING(for HydrologyDCEfficient capability compilation) - -HAVE_HYDROLOGYDCEFFICIENT=no -if test "x$HYDROLOGYDCEFFICIENT" = "xyes"; then - HAVE_HYDROLOGYDCEFFICIENT=yes - AC_DEFINE([_HAVE_HYDROLOGYDCEFFICIENT_],[1],[with HydrologyDCEfficient capability]) -fi -AM_CONDITIONAL([HYDROLOGYDCEFFICIENT], [test x$HAVE_HYDROLOGYDCEFFICIENT = xyes]) -AC_MSG_RESULT($HAVE_HYDROLOGYDCEFFICIENT) -dnl }}} -dnl with-HydrologyDCInefficient{{{ -AC_ARG_WITH([HydrologyDCInefficient], - AS_HELP_STRING([--with-HydrologyDCInefficient = YES], [compile with HydrologyDCInefficient capabilities (default is yes)]), - [HYDROLOGYDCINEFFICIENT=$withval],[HYDROLOGYDCINEFFICIENT=yes]) -AC_MSG_CHECKING(for HydrologyDCInefficient capability compilation) - -HAVE_HYDROLOGYDCINEFFICIENT=no -if test "x$HYDROLOGYDCINEFFICIENT" = "xyes"; then - HAVE_HYDROLOGYDCINEFFICIENT=yes - AC_DEFINE([_HAVE_HYDROLOGYDCINEFFICIENT_],[1],[with HydrologyDCInefficient capability]) -fi -AM_CONDITIONAL([HYDROLOGYDCINEFFICIENT], [test x$HAVE_HYDROLOGYDCINEFFICIENT = xyes]) -AC_MSG_RESULT($HAVE_HYDROLOGYDCINEFFICIENT) -dnl }}} -dnl with-HydrologyGlaDS{{{ -AC_ARG_WITH([HydrologyGlaDS], - AS_HELP_STRING([--with-HydrologyGlaDS = YES], [compile with HydrologyGlaDS capabilities (default is yes)]), - [HYDROLOGYGLADS=$withval],[HYDROLOGYGLADS=yes]) -AC_MSG_CHECKING(for HydrologyGlaDS capability compilation) - -HAVE_HYDROLOGYGLADS=no -if test "x$HYDROLOGYGLADS" = "xyes"; then - HAVE_HYDROLOGYGLADS=yes - AC_DEFINE([_HAVE_HYDROLOGYGLADS_],[1],[with HydrologyGlaDS capability]) -fi -AM_CONDITIONAL([HYDROLOGYGLADS], [test x$HAVE_HYDROLOGYGLADS = xyes]) -AC_MSG_RESULT($HAVE_HYDROLOGYGLADS) -dnl }}} -dnl with-HydrologyPism{{{ -AC_ARG_WITH([HydrologyPism], - AS_HELP_STRING([--with-HydrologyPism = YES], [compile with HydrologyPism capabilities (default is yes)]), - [HYDROLOGYPISM=$withval],[HYDROLOGYPISM=yes]) -AC_MSG_CHECKING(for HydrologyPism capability compilation) - -HAVE_HYDROLOGYPISM=no -if test "x$HYDROLOGYPISM" = "xyes"; then - HAVE_HYDROLOGYPISM=yes - AC_DEFINE([_HAVE_HYDROLOGYPISM_],[1],[with HydrologyPism capability]) -fi -AM_CONDITIONAL([HYDROLOGYPISM], [test x$HAVE_HYDROLOGYPISM = xyes]) -AC_MSG_RESULT($HAVE_HYDROLOGYPISM) -dnl }}} -dnl with-HydrologyShakti{{{ -AC_ARG_WITH([HydrologyShakti], - AS_HELP_STRING([--with-HydrologyShakti = YES], [compile with HydrologyShakti capabilities (default is yes)]), - [HYDROLOGYSHAKTI=$withval],[HYDROLOGYSHAKTI=yes]) -AC_MSG_CHECKING(for HydrologyShakti capability compilation) - -HAVE_HYDROLOGYSHAKTI=no -if test "x$HYDROLOGYSHAKTI" = "xyes"; then - HAVE_HYDROLOGYSHAKTI=yes - AC_DEFINE([_HAVE_HYDROLOGYSHAKTI_],[1],[with HydrologyShakti capability]) -fi -AM_CONDITIONAL([HYDROLOGYSHAKTI], [test x$HAVE_HYDROLOGYSHAKTI = xyes]) -AC_MSG_RESULT($HAVE_HYDROLOGYSHAKTI) -dnl }}} -dnl with-HydrologyShreve{{{ -AC_ARG_WITH([HydrologyShreve], - AS_HELP_STRING([--with-HydrologyShreve = YES], [compile with HydrologyShreve capabilities (default is yes)]), - [HYDROLOGYSHREVE=$withval],[HYDROLOGYSHREVE=yes]) -AC_MSG_CHECKING(for HydrologyShreve capability compilation) - -HAVE_HYDROLOGYSHREVE=no -if test "x$HYDROLOGYSHREVE" = "xyes"; then - HAVE_HYDROLOGYSHREVE=yes - AC_DEFINE([_HAVE_HYDROLOGYSHREVE_],[1],[with HydrologyShreve capability]) -fi -AM_CONDITIONAL([HYDROLOGYSHREVE], [test x$HAVE_HYDROLOGYSHREVE = xyes]) -AC_MSG_RESULT($HAVE_HYDROLOGYSHREVE) -dnl }}} -dnl with-HydrologyArmapw{{{ -AC_ARG_WITH([HydrologyArmapw], - AS_HELP_STRING([--with-HydrologyArmapw = YES], [compile with HydrologyArmapw capabilities (default is yes)]), - [HYDROLOGYARMAPW=$withval],[HYDROLOGYARMAPW=yes]) -AC_MSG_CHECKING(for HydrologyArmapw capability compilation) - -HAVE_HYDROLOGYARMAPW=no -if test "x$HYDROLOGYARMAPW" = "xyes"; then - HAVE_HYDROLOGYARMAPW=yes - AC_DEFINE([_HAVE_HYDROLOGYARMAPW_],[1],[with HydrologyArmapw capability]) -fi -AM_CONDITIONAL([HYDROLOGYARMAPW], [test x$HAVE_HYDROLOGYARMAPW = xyes]) -AC_MSG_RESULT($HAVE_HYDROLOGYARMAPW) -dnl }}} -dnl with-L2ProjectionBase{{{ -AC_ARG_WITH([L2ProjectionBase], - AS_HELP_STRING([--with-L2ProjectionBase = YES], [compile with L2ProjectionBase capabilities (default is yes)]), - [L2PROJECTIONBASE=$withval],[L2PROJECTIONBASE=yes]) -AC_MSG_CHECKING(for L2ProjectionBase capability compilation) - -HAVE_L2PROJECTIONBASE=no -if test "x$L2PROJECTIONBASE" = "xyes"; then - HAVE_L2PROJECTIONBASE=yes - AC_DEFINE([_HAVE_L2PROJECTIONBASE_],[1],[with L2ProjectionBase capability]) -fi -AM_CONDITIONAL([L2PROJECTIONBASE], [test x$HAVE_L2PROJECTIONBASE = xyes]) -AC_MSG_RESULT($HAVE_L2PROJECTIONBASE) -dnl }}} -dnl with-L2ProjectionEPL{{{ -AC_ARG_WITH([L2ProjectionEPL], - AS_HELP_STRING([--with-L2ProjectionEPL = YES], [compile with L2ProjectionEPL capabilities (default is yes)]), - [L2PROJECTIONEPL=$withval],[L2PROJECTIONEPL=yes]) -AC_MSG_CHECKING(for L2ProjectionEPL capability compilation) - -HAVE_L2PROJECTIONEPL=no -if test "x$L2PROJECTIONEPL" = "xyes"; then - HAVE_L2PROJECTIONEPL=yes - AC_DEFINE([_HAVE_L2PROJECTIONEPL_],[1],[with L2ProjectionEPL capability]) -fi -AM_CONDITIONAL([L2PROJECTIONEPL], [test x$HAVE_L2PROJECTIONEPL = xyes]) -AC_MSG_RESULT($HAVE_L2PROJECTIONEPL) -dnl }}} -dnl with-Levelset{{{ -AC_ARG_WITH([Levelset], - AS_HELP_STRING([--with-Levelset = YES], [compile with Levelset capabilities (default is yes)]), - [LEVELSET=$withval],[LEVELSET=yes]) -AC_MSG_CHECKING(for Levelset capability compilation) - -HAVE_LEVELSET=no -if test "x$LEVELSET" = "xyes"; then - HAVE_LEVELSET=yes - AC_DEFINE([_HAVE_LEVELSET_],[1],[with Levelset capability]) -fi -AM_CONDITIONAL([LEVELSET], [test x$HAVE_LEVELSET = xyes]) -AC_MSG_RESULT($HAVE_LEVELSET) -dnl }}} -dnl with-Love{{{ -AC_ARG_WITH([Love], - AS_HELP_STRING([--with-Love = YES], [compile with Love capabilities (default is yes)]), - [LOVE=$withval],[LOVE=yes]) -AC_MSG_CHECKING(for Love capability compilation) - -HAVE_LOVE=no -if test "x$LOVE" = "xyes"; then - HAVE_LOVE=yes - AC_DEFINE([_HAVE_LOVE_],[1],[with Love capability]) -fi -AM_CONDITIONAL([LOVE], [test x$HAVE_LOVE = xyes]) -AC_MSG_RESULT($HAVE_LOVE) -dnl }}} -dnl with-Masstransport{{{ -AC_ARG_WITH([Masstransport], - AS_HELP_STRING([--with-Masstransport = YES], [compile with Masstransport capabilities (default is yes)]), - [MASSTRANSPORT=$withval],[MASSTRANSPORT=yes]) -AC_MSG_CHECKING(for Masstransport capability compilation) - -HAVE_MASSTRANSPORT=no -if test "x$MASSTRANSPORT" = "xyes"; then - HAVE_MASSTRANSPORT=yes - AC_DEFINE([_HAVE_MASSTRANSPORT_],[1],[with Masstransport capability]) -fi -AM_CONDITIONAL([MASSTRANSPORT], [test x$HAVE_MASSTRANSPORT = xyes]) -AC_MSG_RESULT($HAVE_MASSTRANSPORT) -dnl }}} -dnl with-Melting{{{ -AC_ARG_WITH([Melting], - AS_HELP_STRING([--with-Melting = YES], [compile with Melting capabilities (default is yes)]), - [MELTING=$withval],[MELTING=yes]) -AC_MSG_CHECKING(for Melting capability compilation) - -HAVE_MELTING=no -if test "x$MELTING" = "xyes"; then - HAVE_MELTING=yes - AC_DEFINE([_HAVE_MELTING_],[1],[with Melting capability]) -fi -AM_CONDITIONAL([MELTING], [test x$HAVE_MELTING = xyes]) -AC_MSG_RESULT($HAVE_MELTING) -dnl }}} -dnl with-Oceantransport{{{ -AC_ARG_WITH([Oceantransport], - AS_HELP_STRING([--with-Oceantransport = YES], [compile with Oceantransport capabilities (default is yes)]), - [OCEANTRANSPORT=$withval],[OCEANTRANSPORT=yes]) -AC_MSG_CHECKING(for Oceantransport capability compilation) - -HAVE_OCEANTRANSPORT=no -if test "x$OCEANTRANSPORT" = "xyes"; then - HAVE_OCEANTRANSPORT=yes - AC_DEFINE([_HAVE_OCEANTRANSPORT_],[1],[with Oceantransport capability]) -fi -AM_CONDITIONAL([OCEANTRANSPORT], [test x$HAVE_OCEANTRANSPORT = xyes]) -AC_MSG_RESULT($HAVE_OCEANTRANSPORT) -dnl }}} -dnl with-Recovery{{{ -AC_ARG_WITH([Recovery], - AS_HELP_STRING([--with-Recovery = YES], [compile with Recovery capabilities (default is yes)]), - [RECOVERY=$withval],[RECOVERY=yes]) -AC_MSG_CHECKING(for Recovery capability compilation) - -HAVE_RECOVERY=no -if test "x$RECOVERY" = "xyes"; then - HAVE_RECOVERY=yes - AC_DEFINE([_HAVE_RECOVERY_],[1],[with Recovery capability]) -fi -AM_CONDITIONAL([RECOVERY], [test x$HAVE_RECOVERY = xyes]) -AC_MSG_RESULT($HAVE_RECOVERY) -dnl }}} -dnl with-Sampling{{{ -AC_ARG_WITH([Sampling], - AS_HELP_STRING([--with-Sampling = YES], [compile with Sampling capabilities (default is yes)]), - [SAMPLING=$withval],[SAMPLING=yes]) -AC_MSG_CHECKING(for Sampling capability compilation) - -HAVE_SAMPLING=no -if test "x$SAMPLING" = "xyes"; then - HAVE_SAMPLING=yes - AC_DEFINE([_HAVE_SAMPLING_],[1],[with Sampling capability]) -fi -AM_CONDITIONAL([SAMPLING], [test x$HAVE_SAMPLING = xyes]) -AC_MSG_RESULT($HAVE_SAMPLING) -dnl }}} -dnl with-Sealevelchange{{{ -AC_ARG_WITH([Sealevelchange], - AS_HELP_STRING([--with-Sealevelchange = YES], [compile with Sealevelchange capabilities (default is yes)]), - [SEALEVELCHANGE=$withval],[SEALEVELCHANGE=yes]) -AC_MSG_CHECKING(for Sealevelchange capability compilation) - -HAVE_SEALEVELCHANGE=no -if test "x$SEALEVELCHANGE" = "xyes"; then - HAVE_SEALEVELCHANGE=yes - AC_DEFINE([_HAVE_SEALEVELCHANGE_],[1],[with Sealevelchange capability]) -fi -AM_CONDITIONAL([SEALEVELCHANGE], [test x$HAVE_SEALEVELCHANGE = xyes]) -AC_MSG_RESULT($HAVE_SEALEVELCHANGE) -dnl }}} -dnl with-Smb{{{ -AC_ARG_WITH([Smb], - AS_HELP_STRING([--with-Smb = YES], [compile with Smb capabilities (default is yes)]), - [SMB=$withval],[SMB=yes]) -AC_MSG_CHECKING(for Smb capability compilation) - -HAVE_SMB=no -if test "x$SMB" = "xyes"; then - HAVE_SMB=yes - AC_DEFINE([_HAVE_SMB_],[1],[with Smb capability]) -fi -AM_CONDITIONAL([SMB], [test x$HAVE_SMB = xyes]) -AC_MSG_RESULT($HAVE_SMB) -dnl }}} -dnl with-Smooth{{{ -AC_ARG_WITH([Smooth], - AS_HELP_STRING([--with-Smooth = YES], [compile with Smooth capabilities (default is yes)]), - [SMOOTH=$withval],[SMOOTH=yes]) -AC_MSG_CHECKING(for Smooth capability compilation) - -HAVE_SMOOTH=no -if test "x$SMOOTH" = "xyes"; then - HAVE_SMOOTH=yes - AC_DEFINE([_HAVE_SMOOTH_],[1],[with Smooth capability]) -fi -AM_CONDITIONAL([SMOOTH], [test x$HAVE_SMOOTH = xyes]) -AC_MSG_RESULT($HAVE_SMOOTH) -dnl }}} -dnl with-Stressbalance{{{ -AC_ARG_WITH([Stressbalance], - AS_HELP_STRING([--with-Stressbalance = YES], [compile with Stressbalance capabilities (default is yes)]), - [STRESSBALANCE=$withval],[STRESSBALANCE=yes]) -AC_MSG_CHECKING(for Stressbalance capability compilation) - -HAVE_STRESSBALANCE=no -if test "x$STRESSBALANCE" = "xyes"; then - HAVE_STRESSBALANCE=yes - AC_DEFINE([_HAVE_STRESSBALANCE_],[1],[with Stressbalance capability]) -fi -AM_CONDITIONAL([STRESSBALANCE], [test x$HAVE_STRESSBALANCE = xyes]) -AC_MSG_RESULT($HAVE_STRESSBALANCE) -dnl }}} -dnl with-StressbalanceSIA{{{ -AC_ARG_WITH([StressbalanceSIA], - AS_HELP_STRING([--with-StressbalanceSIA = YES], [compile with StressbalanceSIA capabilities (default is yes)]), - [STRESSBALANCESIA=$withval],[STRESSBALANCESIA=yes]) -AC_MSG_CHECKING(for StressbalanceSIA capability compilation) - -HAVE_STRESSBALANCESIA=no -if test "x$STRESSBALANCESIA" = "xyes"; then - HAVE_STRESSBALANCESIA=yes - AC_DEFINE([_HAVE_STRESSBALANCESIA_],[1],[with StressbalanceSIA capability]) -fi -AM_CONDITIONAL([STRESSBALANCESIA], [test x$HAVE_STRESSBALANCESIA = xyes]) -AC_MSG_RESULT($HAVE_STRESSBALANCESIA) -dnl }}} -dnl with-StressbalanceVertical{{{ -AC_ARG_WITH([StressbalanceVertical], - AS_HELP_STRING([--with-StressbalanceVertical = YES], [compile with StressbalanceVertical capabilities (default is yes)]), - [STRESSBALANCEVERTICAL=$withval],[STRESSBALANCEVERTICAL=yes]) -AC_MSG_CHECKING(for StressbalanceVertical capability compilation) - -HAVE_STRESSBALANCEVERTICAL=no -if test "x$STRESSBALANCEVERTICAL" = "xyes"; then - HAVE_STRESSBALANCEVERTICAL=yes - AC_DEFINE([_HAVE_STRESSBALANCEVERTICAL_],[1],[with StressbalanceVertical capability]) -fi -AM_CONDITIONAL([STRESSBALANCEVERTICAL], [test x$HAVE_STRESSBALANCEVERTICAL = xyes]) -AC_MSG_RESULT($HAVE_STRESSBALANCEVERTICAL) -dnl }}} -dnl with-Thermal{{{ -AC_ARG_WITH([Thermal], - AS_HELP_STRING([--with-Thermal = YES], [compile with Thermal capabilities (default is yes)]), - [THERMAL=$withval],[THERMAL=yes]) -AC_MSG_CHECKING(for Thermal capability compilation) - -HAVE_THERMAL=no -if test "x$THERMAL" = "xyes"; then - HAVE_THERMAL=yes - AC_DEFINE([_HAVE_THERMAL_],[1],[with Thermal capability]) -fi -AM_CONDITIONAL([THERMAL], [test x$HAVE_THERMAL = xyes]) -AC_MSG_RESULT($HAVE_THERMAL) -dnl }}} -dnl with-UzawaPressure{{{ -AC_ARG_WITH([UzawaPressure], - AS_HELP_STRING([--with-UzawaPressure = YES], [compile with UzawaPressure capabilities (default is yes)]), - [UZAWAPRESSURE=$withval],[UZAWAPRESSURE=yes]) -AC_MSG_CHECKING(for UzawaPressure capability compilation) - -HAVE_UZAWAPRESSURE=no -if test "x$UZAWAPRESSURE" = "xyes"; then - HAVE_UZAWAPRESSURE=yes - AC_DEFINE([_HAVE_UZAWAPRESSURE_],[1],[with UzawaPressure capability]) -fi -AM_CONDITIONAL([UZAWAPRESSURE], [test x$HAVE_UZAWAPRESSURE = xyes]) -AC_MSG_RESULT($HAVE_UZAWAPRESSURE) -dnl }}} - -]) Index: sm/trunk/m4/ar-lib.m4 =================================================================== --- /issm/trunk/m4/ar-lib.m4 (revision 28275) +++ (revision ) @@ -1,61 +1,0 @@ -## -*- Autoconf -*- -# Copyright (C) 2011-2012 Free Software Foundation, Inc. -# -# This file is free software; the Free Software Foundation -# gives unlimited permission to copy and/or distribute it, -# with or without modifications, as long as this notice is preserved. - -# serial 1 - -# AM_PROG_AR([ACT-IF-FAIL]) -# ------------------------- -# Try to determine the archiver interface, and trigger the ar-lib wrapper -# if it is needed. If the detection of archiver interface fails, run -# ACT-IF-FAIL (default is to abort configure with a proper error message). -AC_DEFUN([AM_PROG_AR], -[AC_BEFORE([$0], [LT_INIT])dnl -AC_BEFORE([$0], [AC_PROG_LIBTOOL])dnl -AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl -AC_REQUIRE_AUX_FILE([ar-lib])dnl -AC_CHECK_TOOLS([AR], [ar lib "link -lib"], [false]) -: ${AR=ar} - -AC_CACHE_CHECK([the archiver ($AR) interface], [am_cv_ar_interface], - [am_cv_ar_interface=ar - AC_COMPILE_IFELSE([AC_LANG_SOURCE([[int some_variable = 0;]])], - [am_ar_try='$AR cru libconftest.a conftest.$ac_objext >&AS_MESSAGE_LOG_FD' - AC_TRY_EVAL([am_ar_try]) - if test "$ac_status" -eq 0; then - am_cv_ar_interface=ar - else - am_ar_try='$AR -NOLOGO -OUT:conftest.lib conftest.$ac_objext >&AS_MESSAGE_LOG_FD' - AC_TRY_EVAL([am_ar_try]) - if test "$ac_status" -eq 0; then - am_cv_ar_interface=lib - else - am_cv_ar_interface=unknown - fi - fi - rm -f conftest.lib libconftest.a - ]) - ]) - -case $am_cv_ar_interface in -ar) - ;; -lib) - # Microsoft lib, so override with the ar-lib wrapper script. - # FIXME: It is wrong to rewrite AR. - # But if we don't then we get into trouble of one sort or another. - # A longer-term fix would be to have automake use am__AR in this case, - # and then we could set am__AR="$am_aux_dir/ar-lib \$(AR)" or something - # similar. - AR="$am_aux_dir/ar-lib $AR" - ;; -unknown) - m4_default([$1], - [AC_MSG_ERROR([could not determine $AR interface])]) - ;; -esac -AC_SUBST([AR])dnl -]) Index: /issm/trunk/m4/issm_options.m4 =================================================================== --- /issm/trunk/m4/issm_options.m4 (revision 28275) +++ /issm/trunk/m4/issm_options.m4 (revision 1) @@ -1,2768 +1,393 @@ dnl ISSM Options -dnl TODO: -dnl - Check if we need statements such as, -dnl -dnl. AM_CONDITIONAL([JAVASCRIPT], [test "x${HAVE_JAVASCRIPT}" = "xyes"]) -dnl -dnl when we have already performed a similar check, -dnl -dnl if test "x${JAVASCRIPT}" = "xno"; then -dnl -dnl - Move library dependency checks from end of file to appropriate places -dnl inline -dnl - Refactor conditionals that test both -d and -f -dnl - AC_DEFUN([ISSM_OPTIONS],[ - AC_MSG_NOTICE(============================================================================) - AC_MSG_NOTICE(= Checking ISSM specific options =) - AC_MSG_NOTICE(============================================================================) - - dnl ISSM's internal options - dnl Build info{{{ - - dnl Build date - AC_PATH_PROGS(DATE, date) - AC_MSG_CHECKING([for build date]) - if test "$DATE"; then - PACKAGE_DATE=`date` - else - PACKAGE_DATE="unknown" - fi - AC_DEFINE_UNQUOTED([PACKAGE_BUILD_DATE], "${PACKAGE_DATE}", [build date]) - AC_MSG_RESULT([${PACKAGE_DATE}]) - - dnl User name - AC_MSG_CHECKING([user name]) - if test -n "$USER" - then - user_name="$USER" - else - if test -n "$LOGNAME"; then - user_name ="$LOGNAME" - else - user_name =`(whoami) 2>/dev/null` || user_name=unknown - fi - fi - AC_DEFINE_UNQUOTED([USER_NAME], "${user_name}", [user name]) - AC_MSG_RESULT([${user_name}]) - - AC_MSG_CHECKING([host full OS name and version]) - dnl Normalize some host OS names - case ${host_os} in - dnl linux is linux is linux, regardless of RMS - linux-gnu* | lignux* ) host_os=linux ;; - esac - AC_DEFINE_UNQUOTED([HOST_OS], "${host_os}", [host full OS name and version]) - AC_MSG_RESULT([${host_os}]) - - AC_MSG_CHECKING([host cpu]) - AC_DEFINE_UNQUOTED([HOST_CPU], "${host_cpu}", [host CPU]) - AC_MSG_RESULT([${host_cpu}]) - - AC_MSG_CHECKING([vendor]) - AC_DEFINE_UNQUOTED([HOST_VENDOR], "${host_vendor}", [host vendor]) - AC_MSG_RESULT([${host_vendor}]) - - AC_MSG_CHECKING([host OS name]) - host_os_name=`echo $host_os | sed 's/\..*//g'` - dnl Normalize some OS names - case ${host_os_name} in - dnl linux is linux is linux, regardless of RMS. - linux-gnu* | lignux* ) host_os_name=linux ;; - esac - AC_DEFINE_UNQUOTED([HOST_OS_NAME], "${host_os_name}", [host OS name]) - AC_MSG_RESULT([${host_os_name}]) - - dnl Parse out the OS version of the host - AC_MSG_CHECKING([host OS version]) - host_os_version=`echo $host_os | sed 's/^[[^0-9]]*//g'` - if test -z "$host_os_version"; then - host_os_version=`(uname -r) 2>/dev/null` || host_os_version=unknown - fi - AC_DEFINE_UNQUOTED([HOST_OS_VERSION], "${host_os_version}", [host OS version]) - AC_MSG_RESULT([${host_os_version}]) - - dnl Determine host architecture (different than CPU) - AC_MSG_CHECKING([host OS architecture]) - host_arch=`(uname -m) 2>/dev/null` || host_arch=unknown - dnl Normalize some names - case ${host_arch} in - sun4* ) host_arch=sun4 ;; - sun3x ) host_arch=sun3 ;; - sun ) host_arch=`(arch) 2>/dev/null` || host_arch=unknown ;; - i?86 ) host_arch=i386 ;; # all x86 should show up as i386 - esac - AC_DEFINE_UNQUOTED([HOST_ARCH], "${host_arch}", [host archictecture]) - AC_MSG_RESULT([${host_arch}]) - - dnl }}} - dnl Debugging {{{ - AC_ARG_ENABLE( - [debugging], dnl feature - AS_HELP_STRING([--enable-debugging], [turn debug support on]), dnl help string - [enable_debugging=${enableval}], dnl action if given - [enable_debugging=no] dnl action if not given - ) - AC_MSG_CHECKING(for debugging support) - if test "x${enable_debugging}" == "xyes"; then - AC_DEFINE([_ISSM_DEBUG_], [1], [Macro to enable debugging in ISSM]) - fi - AC_MSG_RESULT([${enable_debugging}]) - dnl }}} - dnl Development{{{ - AC_ARG_ENABLE( - [development], dnl feature - AS_HELP_STRING([--enable-development], [turn development on]), dnl help string - [enable_development=${enableval}], dnl action if given - [enable_development=no] dnl action if not given - ) - AC_MSG_CHECKING(for development support) - if test "x${enable_development}" == "xyes"; then - AC_DEFINE([_DEVELOPMENT_], [1], [enable development support in ISSM]) - fi - AM_CONDITIONAL([DEVELOPMENT], [test "x${enable_development}" == "xyes"]) - AC_MSG_RESULT([${enable_development}]) - dnl }}} - dnl Standalone Options {{{ - AC_ARG_ENABLE( - [standalone-modules], dnl feature - AS_HELP_STRING([--enable-standalone-modules], [produce standalone modules]), dnl help string - [enable_standalone_modules=${enableval}], dnl action if given - [enable_standalone_modules=no] dnl action if not given - ) - AC_MSG_CHECKING(for standalone modules build) - AM_CONDITIONAL([STANDALONE_MODULES], [test "x${enable_standalone_modules}" == "xyes"]) - AC_MSG_RESULT([${enable_standalone_modules}]) - - AC_ARG_ENABLE( - [standalone-executables], dnl feature - AS_HELP_STRING([--enable-standalone-executables], [produce standalone executables]), dnl help string - [enable_standalone_executables=${enableval}], dnl action if given - [enable_standalone_executables=no] dnl action if not given - ) - AC_MSG_CHECKING(for standalone executables build) - AM_CONDITIONAL([STANDALONE_EXECUTABLES], [test "x${enable_standalone_executables}" == "xyes"]) - AC_MSG_RESULT([${enable_standalone_executables}]) - - AC_ARG_ENABLE( - [standalone-libraries], dnl feature - AS_HELP_STRING([--enable-standalone-libraries], [produce standalone libraries]), dnl help string - [enable_standalone_libraries=${enableval}], dnl action if given - [enable_standalone_libraries=no] dnl action if not given - ) - AC_MSG_CHECKING(for standalone libraries build) - AM_CONDITIONAL([STANDALONE_LIBRARIES], [test "x${enable_standalone_libraries}" == "xyes"]) - AC_MSG_RESULT([${enable_standalone_libraries}]) - dnl }}} - dnl Version{{{ - AC_ARG_ENABLE( - [version], dnl feature - AS_HELP_STRING([--enable-version], [produce libISSM.so.0]), dnl help string - [enable_version=${enableval}], dnl action if given - [enable_version=no] dnl action if not given - ) - AM_CONDITIONAL([VERSION], [test "x${enable_version}" == "xyes"]) - dnl }}} - dnl Wrappers build {{{ - AC_ARG_WITH( - [wrappers], dnl feature - AS_HELP_STRING([--with-wrappers = value], [wrappers compilation]), dnl help string - [WRAPPERS_VALUE=${withval}], dnl action if given - [WRAPPERS_VALUE="yes"] dnl action if not given - ) - AC_MSG_CHECKING(for wrappers compilation) - AM_CONDITIONAL([WRAPPERS], [test "x${WRAPPERS_VALUE}" == "xyes"]) - AC_MSG_RESULT([${WRAPPERS_VALUE}]) - dnl }}} - dnl Extensions{{{ - ISSMEXT=".exe" - AC_SUBST([ISSMEXT]) - dnl }}} - - dnl ISSM's externalpackages - dnl vendor{{{ - AC_ARG_WITH( - [vendor], dnl feature - AS_HELP_STRING([--with-vendor = VENDOR], [vendor name, ex: intel]), dnl help string - [VENDOR=${withval}], dnl action if given - [VENDOR=""] dnl action if not given - ) - - AC_MSG_CHECKING([if this is a Mac build]) - case "${host_os}" in - *darwin*) - IS_MAC=yes - AC_DEFINE([_MAC_], [1], [is macOS]) - dnl When standard Dakota installation has been updated to new - dnl version, remove the following - export CFLAGS="-Wno-deprecated-register -Wno-return-type" - export CXXFLAGS="-Wno-deprecated-register -Wno-return-type" - dnl NOTE: Commenting out the following, for now, as ISSM seems to - dnl compile and run fine, but certain errors (e.g. file not - dnl found) were not bubbling up, and instead causing MATLAB - dnl to crash. - dnl -# if test "${LDFLAGS}" == ""; then -# export LDFLAGS="-Wl,-no_compact_unwind" -# else -# export LDFLAGS="${LDFLAGS} -Wl,-no_compact_unwind" -# fi - ;; - *) - IS_MAC=no - AC_DEFINE([_MAC_], [0], [is macOS]) - ;; - esac - AM_CONDITIONAL([MAC], [test "${IS_MAC}" == "yes"]) - AC_MSG_RESULT([${IS_MAC}]) - - dnl If macOS, check if system copy of libc has fmemopen (if it is not - dnl macOS, we do not check, but still must set SYSTEM_HAS_FMEMOPEN) - AC_MSG_CHECKING([if system copy of libc has fmemopen]) - SYSTEM_FMEMOPEN=1 - if test "${IS_MAC}" == "yes"; then - sys_ver=$(sw_vers -productVersion) - if test $(echo ${sys_ver} | cut -d "." -f 1) -eq 10 && test $(echo ${sys_ver} | cut -d "." -f 2) -lt 13; then - SYSTEM_FMEMOPEN=0 - fi - fi - if test "${SYSTEM_FMEMOPEN}" == "1"; then - AC_MSG_RESULT([yes]) - else - AC_MSG_RESULT([no]) - fi - AC_DEFINE_UNQUOTED([_SYSTEM_HAS_FMEMOPEN_], ${SYSTEM_FMEMOPEN}, [does system copy of libc have fmemopen]) - AM_CONDITIONAL([SYSTEM_HAS_FMEMOPEN], [test "${SYSTEM_FMEMOPEN}" == "1"]) - - IS_MSYS2=no - IS_WINDOWS=no - AC_MSG_CHECKING([for vendor compilers]) - if test -n "${VENDOR}"; then - if test "${VENDOR}" == "intel-win32"; then - export CC=icl - export CXX=icl - export CFLAGS="-DWIN32 -D_INTEL_WIN_" - export CXXFLAGS="-DWIN32 -D_INTEL_WIN_" - IS_WINDOWS=yes - elif test "${VENDOR}" == "intel-win7-32"; then - export CC=cl - export CXX=cl - export CXXFLAGS="-DWIN32 -D_INTEL_WIN_ -EHsc" - export CFLAGS="-DWIN32 -D_INTEL_WIN_ -EHsc" - export AR="ar-lib lib" - export OS_LDFLAG="-Wl," - export RANLIB=true - IS_WINDOWS=yes - OSLIBS="-Wl,kernel32.lib -Wl,user32.lib -Wl,gdi32.lib -Wl,winspool.lib -Wl,comdlg32.lib -Wl,advapi32.lib -Wl,shell32.lib -Wl,ole32.lib -Wl,oleaut32.lib -Wl,uuid.lib -Wl,odbc32.lib -Wl,odbccp32.lib" - elif test "${VENDOR}" == "intel-win7-64"; then - export CC=cl - export CXX=cl - export CXXFLAGS="-DWIN32 -D_INTEL_WIN_ -EHsc" - export CFLAGS="-DWIN32 -D_INTEL_WIN_ -EHsc" - export AR="ar-lib lib" - export OS_LDFLAG="-Wl," - export RANLIB=true - IS_WINDOWS=yes - OSLIBS="-Wl,kernel32.lib -Wl,user32.lib -Wl,gdi32.lib -Wl,winspool.lib -Wl,comdlg32.lib -Wl,advapi32.lib -Wl,shell32.lib -Wl,ole32.lib -Wl,oleaut32.lib -Wl,uuid.lib -Wl,odbc32.lib -Wl,odbccp32.lib" - elif test "${VENDOR}" == "MSVC-Win64"; then - export CC=cl - export CXX=cl - export CXXFLAGS="-DWIN32 -D_INTEL_WIN_ -D_HAVE_PETSC_MPI_ -EHsc" - export CFLAGS="-DWIN32 -D_INTEL_WIN_ -D_HAVE_PETSC_MPI_ -EHsc" - export AR="ar-lib lib" - export OS_LDFLAG="-Wl," - export RANLIB=true - IS_WINDOWS=yes - OSLIBS="-Wl,kernel32.lib -Wl,user32.lib -Wl,gdi32.lib -Wl,winspool.lib -Wl,comdlg32.lib -Wl,advapi32.lib -Wl,shell32.lib -Wl,ole32.lib -Wl,oleaut32.lib -Wl,uuid.lib -Wl,odbc32.lib -Wl,odbccp32.lib" - elif test "${VENDOR}" == "MSVC-Win64-par"; then - export CC=cl - export CXX=cl - export CXXFLAGS="-DWIN32 -D_INTEL_WIN_ -EHsc" - export CFLAGS="-DWIN32 -D_INTEL_WIN_ -EHsc" - export AR="ar-lib lib" - export OS_LDFLAG="-Wl," - export RANLIB=true - IS_WINDOWS=yes - OSLIBS="-Wl,kernel32.lib -Wl,user32.lib -Wl,gdi32.lib -Wl,winspool.lib -Wl,comdlg32.lib -Wl,advapi32.lib -Wl,shell32.lib -Wl,ole32.lib -Wl,oleaut32.lib -Wl,uuid.lib -Wl,odbc32.lib -Wl,odbccp32.lib" - elif test "${VENDOR}" == "intel-linux"; then - export CC=icc - export CXX=icpc - export CFLAGS="-D_INTEL_LINUX_" - export CXXFLAGS="-D_INTEL_LINUX_" - elif test "${VENDOR}" == "intel-gp"; then - export CC=icc - export CXX=icpc - export CFLAGS="-D_INTEL_LINUX_" - export CXXFLAGS="-D_INTEL_LINUX_" - elif test "${VENDOR}" == intel-lonestar; then - export CC=icc - export CXX=icpc - elif test "${VENDOR}" == "intel-aurora"; then - export CC=icc - export CXX=icpc - export CXXFLAGS="-O3 -D_INTEL_LINUX_ -DMPICH_IGNORE_CXX_SEEK" - export CFLAGS="-O3 -D_INTEL_LINUX_ -DMPICH_IGNORE_CXX_SEEK" - elif test "${VENDOR}" == "intel-discover"; then - export CC=mpicc - export CXX=mpicxx - export CXXFLAGS="-O3 -D_INTEL_LINUX_ -DMPICH_IGNORE_CXX_SEEK -std=c++11" - export CFLAGS="-O3 -D_INTEL_LINUX_ -DMPICH_IGNORE_CXX_SEEK" - elif test "${VENDOR}" == "intel-pleiades"; then - export CC=icc - export CXX=icpc - export CXXFLAGS="-O3 -D_INTEL_LINUX_ -std=c++11" - export CFLAGS="-O3 -D_INTEL_LINUX_" - elif test "${VENDOR}" == "intel-acenet"; then - export CC=icc - export CXX=icpc - export CXXFLAGS="-D_INTEL_LINUX_" - export CFLAGS="-D_INTEL_LINUX_" - elif test "${VENDOR}" == "intel-pleiades-gcc"; then - export CC=gcc - export CXX=g++ - export CXXFLAGS="-O3 -march=corei7-avx -std=c++11" - export CFLAGS="-O3 -march=corei7-avx" - elif test "${VENDOR}" == "intel-pleiades-mpi"; then - export CC=mpicc - export CXX=mpicxx - export CXXFLAGS="-O3 -march=corei7-avx -std=c++11 -lirc -lsvml -limf" - export CFLAGS="-O3 -march=corei7-avx" - elif test "${VENDOR}" == "intel-pleiades-icpc"; then - export CXXFLAGS="-g -O3 -ipo -axAVX -ipo -no-inline-min-size -inline-max-size=345 -no-inline-max-total-size -no-inline-max-per-routine -no-inline-max-per-compile -restrict -std=c++11" - export CFLAGS="-g -O3 -ipo -axAVX -ipo -no-inline-min-size -inline-max-size=345 -no-inline-max-total-size -no-inline-max-per-routine -no-inline-max-per-compile -restrict" - AC_DEFINE([_HAVE_RESTRICT_], [1], [with restrict buffers]) - elif test "${VENDOR}" == "win-msys2"; then - export CXXFLAGS="-D_MSYS2_" - export LDFLAGS="${LDFLAGS} -no-undefined" - export OSLIBS="-Wl,-L/c/msys64/mingw64/lib -Wl,-lstdc++ -Wl,-lmingw32 -Wl,-lgcc_s -Wl,-lmoldname -Wl,-lmingwex -Wl,-lmsvcrt -Wl,-lm -Wl,-lpthread -Wl,-lshell32 -Wl,-luser32 -Wl,-lgdi32 -Wl,-luser32 -Wl,-ladvapi32 -Wl,-lkernel32 -Wl,-lgcc" - IS_MSYS2=yes - else - AC_MSG_ERROR([unknown compiler vendor!]) - fi - fi - dnl Set default standard for C++ - if test "${CXXFLAGS}" == ""; then - export CXXFLAGS="-std=C++11" - fi - AC_SUBST([OSLIBS]) - AC_MSG_RESULT([done]) - - AC_MSG_CHECKING([if this is a MSVC (Windows) build]) - AM_CONDITIONAL([WINDOWS], [test "x${IS_WINDOWS}" == "xyes"]) - AC_MSG_RESULT([${IS_WINDOWS}]) - - AC_MSG_CHECKING([if this is a MSYS2 (Windows) build]) - AM_CONDITIONAL([MSYS2], [test "x${IS_MSYS2}" == "xyes"]) - AC_MSG_RESULT([${IS_MSYS2}]) - AC_DEFINE([_IS_MSYS2_], [1], [is a MSYS2 (Windows) build]) - dnl }}} - dnl MATLAB{{{ - - dnl See if MATLAB has been provided - AC_MSG_CHECKING([for MATLAB]) - AC_ARG_WITH( - [matlab-dir], dnl feature - AS_HELP_STRING([--with-matlab-dir=DIR], [MATLAB root directory]), dnl help string - [MATLAB_ROOT=${withval}], dnl action if given - [MATLAB_ROOT="no"] dnl action if not given - ) - if test "x${MATLAB_ROOT}" == "xno"; then - HAVE_MATLAB=no - else - if ! test -d "${MATLAB_ROOT}"; then - AC_MSG_ERROR([MATLAB directory provided (${MATLAB_ROOT}) does not exist!]); - fi - if ! test -f "${MATLAB_ROOT}/extern/include/mex.h"; then - AC_MSG_ERROR([Couldn't find mex.h... check your installation of MATLAB]) - fi + dnl Debugging option check. + AC_ARG_ENABLE([debugging],AS_HELP_STRING([--enable-debugging], + [turn debug support on]), + [enable_debugging=$enableval],[enable_debugging=no]) + if test "x$enable_debugging" = xyes; then + AC_DEFINE([_DEBUG_],[1],[Macro to enable debugging in Dakota.]) + fi + + dnl serial build? + AC_ARG_WITH([serial], + AS_HELP_STRING([--with-serial = value], + [serial compilation. ]), + [SERIAL_VALUE=$withval],[SERIAL_VALUE="yes"]) + AC_MSG_CHECKING(for serial compilation) + AM_CONDITIONAL([NOSERIAL], [test $SERIAL_VALUE = no]) + AC_MSG_RESULT($SERIAL_VALUE) + + + dnl parallel build? + AC_ARG_WITH([parallel], + AS_HELP_STRING([--with-parallel = value], + [parallel compilation. ]), + [PARALLEL_VALUE=$withval],[PARALLEL_VALUE="yes"]) + AC_MSG_CHECKING(for parallel compilation) + AM_CONDITIONAL([NOPARALLEL], [test $PARALLEL_VALUE = no]) + AC_MSG_RESULT($PARALLEL_VALUE) + + dnl: check that at least serial or parallel builds have been requested! + if test "$SERIAL_VALUE" != "yes" ; then + if test "$PARALLEL_VALUE" != "yes"; then + AC_MSG_ERROR([cannot request --with-serial=no and --with-parallel=no at the same time!]) + fi + fi + + + dnl Matlab directory + AC_ARG_WITH([matlab-dir], + AS_HELP_STRING([--with-matlab-dir = DIR], + [matlab root directory. necessary for serial build.]), + [MATLAB_ROOT=$withval],[MATLAB_ROOT=""]) + + if test -d "$MATLAB_ROOT"; then + + AC_MSG_CHECKING(for Matlab headers and libraries in $MATLAB_ROOT) + + dnl defaults HAVE_MATLAB=yes - fi - AC_MSG_RESULT([${HAVE_MATLAB}]) - AM_CONDITIONAL([MATLAB], [test "x${HAVE_MATLAB}" == "xyes"]) - - dnl Set variables - if test "x${HAVE_MATLAB}" == "xyes"; then - AC_DEFINE([_HAVE_MATLAB_], [1], [with MATLAB in ISSM src]) - - dnl Set MEX* variable - AC_MSG_CHECKING([MATLAB's mex compilation flags]) - - dnl NOTE: We know $VENDOR cannot be empty at this point, so no need to - dnl check again in the following conditionals - dnl + MATLABINCL=-I"$MATLAB_ROOT/extern/include"; + dnl use matlab provided mexext routine to test for extension + MEXEXT=`$MATLAB_ROOT/bin/mexext` + MEXEXT=".$MEXEXT" + MEX=$MATLAB_ROOT/bin/mex + + dnl OS-dependent variables and checks case "${host_os}" in - *mingw*) - if test "${IS_MSYS2}" == "yes"; then - dnl Value to set MEXEXT to can be found on Windows by running $MATLAB_ROOT/bin/mexext.bat - MEXEXT=".mexw64" - MATLABINCL="-I${MATLAB_ROOT}/extern/include" - MEXOPTFLAGS="-O2 -fwrapv -DNDEBUG -g" - MEXCFLAGS="-fexceptions -fno-omit-frame-pointer -m64 -DMATLAB_MEX_FILE" - MEXCXXFLAGS="-fexceptions -fno-omit-frame-pointer -std=c++11 -m64 -DMATLAB_MEX_FILE" - MEXLINKFLAGS="-m64 -Wl,--no-undefined -shared -static -Wl,${MATLAB_ROOT}/extern/lib/win64/mingw64/mexFunction.def" - MEXLIB_DIR="${MATLAB_ROOT}/extern/lib/win64/mingw64" - MEXLIB="-L${MEXLIB_DIR} -lmx -lmex -lmat -lm -lmwlapack -lmwblas" - fi - ;; - *) - MEXEXT=$(${MATLAB_ROOT}/bin/mex -v 2>&1 < /dev/null | grep LDEXTENSION | sed -e "s/ LDEXTENSION = //g") - MATLABINCL="-I${MATLAB_ROOT}/extern/include" - MEXLINKFLAGS=$(${MATLAB_ROOT}/bin/mex -v 2>&1 < /dev/null | grep LDFLAGS | sed -e "s/ LDFLAGS = //g") - MEXLIB=$(${MATLAB_ROOT}/bin/mex -v 2>&1 < /dev/null | grep CXXLIBS | sed -e "s/ CXXLIBS = //g") - if test -z "${MEXEXT}"; then - echo "#include " > conftest.cpp - echo "void mexFunction(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[]){}" >> conftest.cpp - ${MATLAB_ROOT}/bin/mex -v -lmex conftest.cpp > conftest.tmp 2>&1 - rm -f conftest.cpp - MEXLINKFLAGS=$(cat conftest.tmp | grep LDFLAGS | sed -e "s/LDFLAGS ://g") - MEXLIB=$(cat conftest.tmp | grep LINKLIBS | sed -e "s/LINKLIBS ://g") - MEXEXT=$(cat conftest.tmp | grep LDEXT | sed -e "s/LDEXT ://g" | awk '{print $[1]}') - if test -z "${MEXEXT}"; then - cat conftest.tmp - fi - rm -f conftest.tmp - fi - - dnl Make sure mexFunction.map is not in MEXLIB to avoid problems with global variables - dnl MEXLINKFLAGS=$(echo ${MEXLINKFLAGS} | sed -e "s/,-expo.*mexFunction\\.map\"//g" | sed -e "s/-[[^ ]]*mexFunction\\.map//g") - MEXLINKFLAGS="" dnl We actually don't need MEXLINK???? + *linux*) + if test "${host_cpu}" = "x86_64"; + then + MEXLIB=-L"$MATLAB_ROOT/bin/glnxa64/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnxa64/mexFunction.map"; + else + MEXLIB=-L"$MATLAB_ROOT/bin/glnx86/ -lmex" + MEXLINK="-pthread -shared -W2,--version-script,${MATLAB_ROOT}/extern/lib/glnx86/mexFunction.map"; + fi ;; esac - AC_MSG_RESULT([done]) - if test -z "${MEXEXT}"; then - AC_MSG_ERROR([Couldn't use MATLAB's mex... check manual compilation with MATLAB or error message above]) - fi - + + AC_DEFINE([_HAVE_MATLAB_],[1],[with Matlab in ISSM src]) + AC_SUBST([MATLABINCL]) + AC_SUBST([MEX]) AC_SUBST([MEXEXT]) - AC_SUBST([MEXOPTFLAGS]) - AC_SUBST([MEXCFLAGS]) - AC_SUBST([MEXCXXFLAGS]) - AC_SUBST([MATLABINCL]) - AC_SUBST([MEXLINKFLAGS]) - AC_SUBST([MEXLIB]) - fi - dnl }}} - dnl JavaScript{{{ - AC_MSG_CHECKING([for JavaScript]) - AC_ARG_WITH( - [javascript], - AS_HELP_STRING([--with-javascript], [compile JavaScript wrappers? (default: no)]), - [JAVASCRIPT=${withval}], - [JAVASCRIPT="no"] - ) - if test "x${JAVASCRIPT}" == "xno"; then - HAVE_JAVASCRIPT=no - else - HAVE_JAVASCRIPT=yes - AC_DEFINE([_HAVE_JAVASCRIPT_], [1], [with JavaScript]) - fi - AC_MSG_RESULT([${HAVE_JAVASCRIPT}]) - AM_CONDITIONAL([JAVASCRIPT], [test "x${HAVE_JAVASCRIPT}" == "xyes"]) - JAVASCRIPTWRAPPEREXT=.js - AC_SUBST([JAVASCRIPTWRAPPEREXT]) - dnl }}} - dnl Triangle {{{ - AC_MSG_CHECKING([for triangle]) - AC_ARG_WITH( - [triangle-dir], - AS_HELP_STRING([--with-triangle-dir=DIR], [Triangle root directory]), - [TRIANGLE_ROOT=${withval}], - [TRIANGLE_ROOT="no"] - ) - if test "x${TRIANGLE_ROOT}" == "xno"; then - HAVE_TRIANGLE=no - else + AC_SUBST([MEXLIB]) + AC_SUBST([MEXLINK]) + + AC_MSG_RESULT($HAVE_MATLAB) + else + HAVE_MATLAB=no + fi + + + if test $HAVE_MATLAB = no; then + if test "$SERIAL_VALUE" = "yes" ; then + AC_MSG_ERROR([--with-matlab-dir missing. Matlab is needed to run ISSM serially!]) + fi + fi + + dnl get version number + if test $HAVE_MATLAB = yes; then + + AX_MATLAB_VERSION + + dnl if matlab version is 7.5 and more, and if platform is x86_64, then compile with largearray + dnl default is no + largearrays=no + if test $MATLAB_MAJOR -ge 7; then + if test $MATLAB_MINOR -ge 5; then + if test "${host_cpu}" = "x86_64"; then + largearrays=yes + fi + fi + fi + fi + AM_CONDITIONAL(LARGEARRAYS, test x$largearrays = xyes) + + dnl Triangle directory + AC_ARG_WITH([triangle-dir], + AS_HELP_STRING([--with-triangle-dir = DIR], [triangle root directory. necessary for serial build]), + [TRIANGLE_ROOT=$withval],[TRIANGLE_ROOT=""]) + AC_MSG_CHECKING(for Triangle headers and libraries ) + if test -d "$TRIANGLE_ROOT"; then + + + dnl defaults HAVE_TRIANGLE=yes - if ! test -d "${TRIANGLE_ROOT}"; then - AC_MSG_ERROR([Triangle directory provided (${TRIANGLE_ROOT}) does not exist!]); - fi - if ! test -f "${TRIANGLE_ROOT}/include/triangle.h"; then - AC_MSG_ERROR([Couldn't find triangle.h... check your installation of triangle]) - fi - fi - AC_MSG_RESULT([${HAVE_TRIANGLE}]) - AM_CONDITIONAL([TRIANGLE], [test "x${HAVE_TRIANGLE}" == "xyes"]) - - dnl Triangle libraries and header files - if test "x${HAVE_TRIANGLE}" == "xyes"; then - TRIANGLEINCL=-I${TRIANGLE_ROOT}/include - case "${host_os}" in - *darwin*) - if test "x${HAVE_JAVASCRIPT}" == "xyes"; then - dnl Link to the object file, not the library - TRIANGLELIB=${TRIANGLE_ROOT}/share/triangle.o - else - TRIANGLELIB="-L${TRIANGLE_ROOT}/lib -ltriangle" - fi - ;; - *linux*) - if test "x${HAVE_JAVASCRIPT}" == "xyes"; then - dnl Link to the object file, not the library - TRIANGLELIB=${TRIANGLE_ROOT}/share/triangle.o - else - TRIANGLELIB="-L${TRIANGLE_ROOT}/lib -ltriangle" - fi - ;; - *mingw*) - if test "x${HAVE_JAVASCRIPT}" == "xyes"; then - dnl Link to the object file, not the library - TRIANGLELIB=${TRIANGLE_ROOT}/share/triangle.o - else - TRIANGLELIB="-Wl,-L${TRIANGLE_ROOT}/lib -Wl,-ltriangle" - fi - ;; - esac - AC_DEFINE([_HAVE_TRIANGLE_], [1], [with Triangle in ISSM src]) + TRIANGLEINCL=-I$TRIANGLE_ROOT/ + TRIANGLELIB=$TRIANGLE_ROOT/triangle.a + + AC_DEFINE([_HAVE_TRIANGLE_],[1],[with Triangle in ISSM src]) AC_SUBST([TRIANGLEINCL]) AC_SUBST([TRIANGLELIB]) - fi - dnl }}} - dnl Boost{{{ - AC_MSG_CHECKING([for Boost]) - AC_ARG_WITH( - [boost-dir], - AS_HELP_STRING([--with-boost-dir=DIR], [Boost root directory]), - [BOOST_ROOT=${withval}], - [BOOST_ROOT="no"] - ) - if test "x${BOOST_ROOT}" == "xno"; then - HAVE_BOOST=no - else - HAVE_BOOST=yes - if ! test -d "${BOOST_ROOT}"; then - AC_MSG_ERROR([Boost directory provided (${BOOST_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_BOOST}]) - AM_CONDITIONAL([BOOST], [test "x${HAVE_BOOST}" == "xyes"]) - - dnl Boost libraries and header files - if test "x${HAVE_BOOST}" == "xyes"; then - BOOSTINCL="-I${BOOST_ROOT}/include" - #BOOSTLIB="-L$BOOST_ROOT/lib -lboost_python" - AC_MSG_CHECKING(for Boost version) - BOOST_VERSION=`cat ${BOOST_ROOT}/include/boost/version.hpp | grep "#define BOOST_VERSION " | sed 's/.*BOOST_VERSION //'` - BOOST_VERSION_MAJOR=`expr ${BOOST_VERSION} / 100000` - BOOST_VERSION_MINOR=`expr ${BOOST_VERSION} / 100 % 1000` - AC_MSG_RESULT([${BOOST_VERSION_MAJOR}.${BOOST_VERSION_MINOR}]) - AC_DEFINE([_HAVE_BOOST_], [1], [with Boost in ISSM src]) - AC_SUBST([BOOSTINCL]) - AC_SUBST([BOOSTLIB]) - fi - dnl }}} - dnl Dakota{{{ - AC_MSG_CHECKING([for Dakota]) - AC_ARG_WITH( - [dakota-dir], - AS_HELP_STRING([--with-dakota-dir=DIR], [Dakota root directory]), - [DAKOTA_ROOT=${withval}], - [DAKOTA_ROOT="no"] - ) - if test "x${DAKOTA_ROOT}" == "xno"; then - HAVE_DAKOTA=no - else - HAVE_DAKOTA=yes - if ! test -d "${DAKOTA_ROOT}"; then - AC_MSG_ERROR([Dakota directory provided (${DAKOTA_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_DAKOTA}]) - AM_CONDITIONAL([DAKOTA], [test "x${HAVE_DAKOTA}" == "xyes"]) - - dnl Dakota libraries and header files - if test "x${HAVE_DAKOTA}" == "xyes"; then - DAKOTAINCL=-I${DAKOTA_ROOT}/include - - AC_MSG_CHECKING(for Dakota version) - dnl TODO: - dnl - Check if this method applies to all other versions of Dakota (it - dnl should as long as the Dakota binaries have been compiled). If so, - dnl we can remove the other methods of getting the version. - dnl - Modify src/wrappers/IssmConfig/IssmConfig.cpp so that strlen is - dnl not called with _DAKOTA_VERSION_ as an argument so that we can - dnl do, - dnl - dnl AC_DEFINE_UNQUOTED([_DAKOTA_VERSION_], ${DAKOTA_VERSION}, [Dakota version number]) - dnl - if test -f "${DAKOTA_ROOT}/VERSION"; then - DAKOTA_VERSION=`cat ${DAKOTA_ROOT}/VERSION | grep 'DAKOTA Version' | sed 's/.*DAKOTA Version //' | sed 's/ .*//'` - else - DAKOTA_VERSION_OUTPUT=`${DAKOTA_ROOT}/bin/dakota -v` - if test -n "${DAKOTA_VERSION_OUTPUT}"; then - DAKOTA_VERSION=`echo ${DAKOTA_VERSION_OUTPUT} grep "Dakota version" | sed 's/Dakota version //' | sed 's/ .*//'` - elif test -f "${DAKOTA_ROOT}/../src/src/CommandLineHandler.C"; then - DAKOTA_VERSION=`cat ${DAKOTA_ROOT}/../src/src/CommandLineHandler.C | grep 'DAKOTA version' | grep 'release' | grep -v // | sed 's/.*DAKOTA version //' | sed 's/ .*//' ` - elif test -f "${DAKOTA_ROOT}/../src/src/CommandLineHandler.cpp"; then - DAKOTA_VERSION=`cat ${DAKOTA_ROOT}/../src/src/CommandLineHandler.cpp | grep 'DAKOTA version' | grep 'release' | grep -v // | sed 's/.*DAKOTA version //' | sed 's/ .*//' ` - else - AC_MSG_ERROR([Dakota CommandLineHandler.C or CommandLineHandler.cpp file not found to determine DAKOTA_VERSION!]); - fi - fi - AC_MSG_RESULT([${DAKOTA_VERSION}]) - AC_DEFINE_UNQUOTED(_DAKOTA_VERSION_, "${DAKOTA_VERSION}", [Dakota version number]) - - DAKOTAFLAGS="" - - dnl NOTE: - dnl - See, - dnl - dnl $ISSM_DIR/externalpackages/dakota/build/src/Makefile.export.Dakota - dnl - dnl for the flags needed by your combination of Boost and Dakota - dnl versions - dnl - We know $DAKOTA_ROOT cannot be empty at this point, so no need to - dnl check again in the following conditionals - dnl - dnl TODO: - dnl - Should we also be checking if HAVE_BOOST before adding boost libs? - dnl - Clean up the following conditionals - dnl - case "${host_os}" in - *darwin*) - if test "${DAKOTA_VERSION}" == "5.1" || test "${DAKOTA_VERSION}" == "5.2"; then - DAKOTALIB="-L${DAKOTA_ROOT}/lib -ldakota -lteuchos -lpecos -llhs -lsparsegrid -lsurfpack -lconmin -lddace -lfsudace -ljega -lcport -loptpp -lpsuade -lncsuopt -lcolin -linterfaces -lmomh -lscolib -lpebbl -ltinyxml -lutilib -l3po -lhopspack -lnidr -lamplsolver -lboost_signals -lboost_regex -lboost_filesystem -lboost_system -ldl" - elif test "${DAKOTA_VERSION}" == "5.3" || test "${DAKOTA_VERSION}" == "5.3.1"; then - DAKOTAFLAGS="-DDISABLE_DAKOTA_CONFIG_H -DBOOST_MULTI_INDEX_DISABLE_SERIALIZATION -DDAKOTA_PLUGIN -DBOOST_DISABLE_ASSERTS -DDAKOTA_HAVE_BOOST_FS -DHAVE_UNISTD_H -DHAVE_SYSTEM -DHAVE_WORKING_FORK -DHAVE_WORKING_VFORK -DHAVE_SYS_WAIT_H -DHAVE_USLEEP -DDAKOTA_F90 -DDAKOTA_HAVE_MPI -DHAVE_PECOS -DHAVE_SURFPACK -DDAKOTA_COLINY -DDAKOTA_UTILIB -DHAVE_ADAPTIVE_SAMPLING -DHAVE_CONMIN -DDAKOTA_DDACE -DHAVE_FSUDACE -DDAKOTA_HOPS -DHAVE_JEGA -DHAVE_NCSU -DHAVE_NL2SOL -DHAVE_OPTPP -DDAKOTA_OPTPP -DHAVE_PSUADE -DHAVE_AMPL" - DAKOTALIB="-L${DAKOTA_ROOT}/lib -L${BOOST_ROOT}/lib -ldakota_src -lpecos_src -lscolib -ljega_fe -llhs -lpebbl -lcolin -linterfaces -lmods -lmoga -loptpp -lsampling -lsoga -lsurfpack -lutilib -lconmin -ldakota_src_fortran -lmod -lncsuopt -lsurfpack_fortran -lteuchos -l3po -lamplsolver -lanalyzer -lbose -lcport -ldace -ldfftpack -leutils -lfsudace -lhopspack -ljega -lnidr -lpecos -lpsuade -lrandom -ltinyxml -lutilities -lsparsegrid -lboost_signals -lboost_regex -lboost_filesystem -lboost_system" - AC_DEFINE([DISABLE_DAKOTA_CONFIG_H], [1], [enabling DAKOTA_CONFIG_H]) - AC_DEFINE([DAKOTA_HAVE_MPI], [1], [enabling Dakota with MPI]) - elif test "${DAKOTA_VERSION}" == "6.1" || test "${DAKOTA_VERSION}" == "6.2"; then - if test "${BOOST_VERSION_MAJOR}" == "1"; then - DAKOTAFLAGS="-DHAVE_CONFIG_H -DDISABLE_DAKOTA_CONFIG_H -DBOOST_DISABLE_ASSERTS -DHAVE_UNISTD_H -DHAVE_SYSTEM -DHAVE_WORKING_FORK -DHAVE_WORKING_VFORK -DHAVE_SYS_WAIT_H -DHAVE_USLEEP -DDAKOTA_F90 -DDAKOTA_HAVE_MPI -DHAVE_PECOS -DHAVE_SURFPACK -DHAVE_ADAPTIVE_SAMPLING -DHAVE_ESM -DHAVE_QUESO -DHAVE_QUESO_GPMSA -DHAVE_CONMIN -DHAVE_DDACE -DHAVE_DREAM -DHAVE_FSUDACE -DDAKOTA_HOPS -DHAVE_NCSU -DHAVE_NL2SOL -DHAVE_NOMAD -DHAVE_OPTPP -DDAKOTA_OPTPP -DHAVE_PSUADE -DHAVE_AMPL" - DAKOTALIB="-L${DAKOTA_ROOT}/lib -ldakota_src -ldakota_src_fortran -lnidr -lteuchos -lpecos -lpecos_src -llhs -llhs_mods -llhs_mod -ldfftpack -lsparsegrid -lsurfpack -lsurfpack -lsurfpack_fortran -lqueso -lconmin -lddace -ldream -lfsudace -lhopspack -lncsuopt -lcport -lnomad -loptpp -lpsuade -lamplsolver" - DAKOTALIB+=" -L${BOOST_ROOT}/lib -lboost_filesystem -lboost_program_options -lboost_regex -lboost_serialization -lboost_system" - DAKOTALIB+=" ${BLASLAPACKLIB}" - fi - AC_DEFINE([DISABLE_DAKOTA_CONFIG_H], [1], [enabling DAKOTA_CONFIG_H]) - AC_DEFINE([DAKOTA_HAVE_MPI], [1], [enabling Dakota with MPI]) - elif test "${DAKOTA_VERSION}" == "6.11"; then - if test "${BOOST_VERSION_MAJOR}" == "1"; then - if test "${BOOST_VERSION_MINOR}" == "55"; then - DAKOTAFLAGS="-DDISABLE_DAKOTA_CONFIG_H -DBOOST_MULTI_INDEX_DISABLE_SERIALIZATION -DDAKOTA_PLUGIN -DBOOST_DISABLE_ASSERTS -DDAKOTA_HAVE_BOOST_FS -DHAVE_UNISTD_H -DHAVE_SYSTEM -DHAVE_WORKING_FORK -DHAVE_WORKING_VFORK -DHAVE_SYS_WAIT_H -DHAVE_USLEEP -DDAKOTA_F90 -DDAKOTA_HAVE_MPI -DHAVE_PECOS -DHAVE_SURFPACK -DDAKOTA_UTILIB -DHAVE_ADAPTIVE_SAMPLING -DHAVE_CONMIN -DDAKOTA_DDACE -DHAVE_FSUDACE -DDAKOTA_HOPS -DHAVE_NCSU -DHAVE_NL2SOL -DHAVE_OPTPP -DDAKOTA_OPTPP -DHAVE_PSUADE -DHAVE_AMPL" - DAKOTALIB="-L${DAKOTA_ROOT}/lib -ldakota_src -ldream -lfsudace -lddace -lnomad -lpecos_src -llhs -llhs_mods -loptpp -lsurfpack -lconmin -ldakota_src_fortran -llhs_mod -lncsuopt -lsurfpack_fortran -lteuchos -lamplsolver -lcport -ldfftpack -lfsudace -lhopspack -lnidr -lpecos -lpsuade -lsparsegrid -L$BOOST_ROOT/lib -lboost_serialization -lboost_signals -lboost_regex -lboost_filesystem -lboost_system ${BLASLAPACKLIB}" - elif test "${BOOST_VERSION_MINOR}" == "72"; then - DAKOTAFLAGS="-DHAVE_CONFIG_H -DDISABLE_DAKOTA_CONFIG_H -DBOOST_DISABLE_ASSERTS -DHAVE_UNISTD_H -DHAVE_SYSTEM -DHAVE_WORKING_FORK -DHAVE_WORKING_VFORK -DHAVE_SYS_WAIT_H -DHAVE_USLEEP -DDAKOTA_F90 -DDAKOTA_HAVE_MPI -DHAVE_PECOS -DHAVE_SURFPACK -DHAVE_ADAPTIVE_SAMPLING -DHAVE_ESM -DHAVE_CONMIN -DHAVE_DDACE -DHAVE_DREAM -DHAVE_FSUDACE -DDAKOTA_HOPS -DHAVE_NCSU -DHAVE_NL2SOL -DHAVE_NOMAD -DHAVE_OPTPP -DDAKOTA_OPTPP -DHAVE_PSUADE -DHAVE_AMPL" - DAKOTALIB="-L${DAKOTA_ROOT}/lib -ldakota_src -ldakota_src_fortran -lnidr -lteuchosremainder -lteuchosnumerics -lteuchoscomm -lteuchosparameterlist -lteuchosparser -lteuchoscore -lpecos_util -lpecos_src -llhs -llhs_mods -llhs_mod -ldfftpack -lsparsegrid -lsurfpack -lsurfpack -lsurfpack_fortran -lapproxnn -lconmin -lddace -ldream -lfsudace -lhopspack -lncsuopt -lcport -lnomad -loptpp -lpsuade -lamplsolver -L${BOOST_ROOT}/lib -lboost_filesystem -lboost_program_options -lboost_regex -lboost_serialization -lboost_system ${BLASLAPACKLIB}" - fi - fi - AC_DEFINE([DISABLE_DAKOTA_CONFIG_H], [1], [enabling DAKOTA_CONFIG_H]) - AC_DEFINE([DAKOTA_HAVE_MPI], [1], [enabling Dakota with MPI]) - else - AC_MSG_ERROR([Dakota version not found or version (${DAKOTA_VERSION}) not supported!]); - fi - ;; - *linux*) - if test "${DAKOTA_VERSION}" == "5.1" || test "${DAKOTA_VERSION}" == "5.2"; then - DAKOTALIB="-L${DAKOTA_ROOT}/lib -ldakota -lteuchos -lpecos -llhs -lsparsegrid -lsurfpack -lconmin -lddace -lfsudace -ljega -lcport -loptpp -lpsuade -lncsuopt -lcolin -linterfaces -lmomh -lscolib -lpebbl -ltinyxml -lutilib -l3po -lhopspack -lnidr -lamplsolver -lboost_signals -lboost_regex -lboost_filesystem -lboost_system -ldl" - elif test "${DAKOTA_VERSION}" == "5.3" || test "${DAKOTA_VERSION}" == "5.3.1"; then - DAKOTAFLAGS="-DDISABLE_DAKOTA_CONFIG_H -DBOOST_MULTI_INDEX_DISABLE_SERIALIZATION -DDAKOTA_PLUGIN -DBOOST_DISABLE_ASSERTS -DDAKOTA_HAVE_BOOST_FS -DHAVE_UNISTD_H -DHAVE_SYSTEM -DHAVE_WORKING_FORK -DHAVE_WORKING_VFORK -DHAVE_SYS_WAIT_H -DHAVE_USLEEP -DDAKOTA_F90 -DDAKOTA_HAVE_MPI -DHAVE_PECOS -DHAVE_SURFPACK -DDAKOTA_COLINY -DDAKOTA_UTILIB -DHAVE_ADAPTIVE_SAMPLING -DHAVE_CONMIN -DDAKOTA_DDACE -DHAVE_FSUDACE -DDAKOTA_HOPS -DHAVE_JEGA -DHAVE_NCSU -DHAVE_NL2SOL -DHAVE_OPTPP -DDAKOTA_OPTPP -DHAVE_PSUADE -DHAVE_AMPL" - DAKOTALIB="-L${DAKOTA_ROOT}/lib -L${BOOST_ROOT}/lib -ldakota_src -lpecos_src -lscolib -ljega_fe -llhs -lpebbl -lcolin -linterfaces -lmods -lmoga -loptpp -lsampling -lsoga -lsurfpack -lutilib -lconmin -ldakota_src_fortran -lmod -lncsuopt -lsurfpack_fortran -lteuchos -l3po -lamplsolver -lanalyzer -lbose -lcport -ldace -ldfftpack -leutils -lfsudace -lhopspack -ljega -lnidr -lpecos -lpsuade -lrandom -ltinyxml -lutilities -lsparsegrid -lboost_signals -lboost_regex -lboost_filesystem -lboost_system" - AC_DEFINE([DISABLE_DAKOTA_CONFIG_H], [1], [enabling DAKOTA_CONFIG_H]) - AC_DEFINE([DAKOTA_HAVE_MPI], [1], [enabling Dakota with MPI]) - elif test "${DAKOTA_VERSION}" == "6.1" || test "${DAKOTA_VERSION}" == "6.2"; then - if test "${BOOST_VERSION_MAJOR}" == "1"; then - DAKOTAFLAGS="-DHAVE_CONFIG_H -DDISABLE_DAKOTA_CONFIG_H -DBOOST_DISABLE_ASSERTS -DHAVE_UNISTD_H -DHAVE_SYSTEM -DHAVE_WORKING_FORK -DHAVE_WORKING_VFORK -DHAVE_SYS_WAIT_H -DHAVE_USLEEP -DDAKOTA_F90 -DDAKOTA_HAVE_MPI -DHAVE_PECOS -DHAVE_SURFPACK -DHAVE_ADAPTIVE_SAMPLING -DHAVE_ESM -DHAVE_QUESO -DHAVE_QUESO_GPMSA -DHAVE_CONMIN -DHAVE_DDACE -DHAVE_DREAM -DHAVE_FSUDACE -DDAKOTA_HOPS -DHAVE_NCSU -DHAVE_NL2SOL -DHAVE_NOMAD -DHAVE_OPTPP -DDAKOTA_OPTPP -DHAVE_PSUADE -DHAVE_AMPL" - DAKOTALIB="-L${DAKOTA_ROOT}/lib -ldakota_src -ldakota_src_fortran -lnidr -lteuchos -lpecos -lpecos_src -llhs -llhs_mods -llhs_mod -ldfftpack -lsparsegrid -lsurfpack -lsurfpack -lsurfpack_fortran -lqueso -lconmin -lddace -ldream -lfsudace -lhopspack -lncsuopt -lcport -lnomad -loptpp -lpsuade -lamplsolver" - DAKOTALIB+=" -L${BOOST_ROOT}/lib -lboost_filesystem -lboost_program_options -lboost_regex -lboost_serialization -lboost_system" - DAKOTALIB+=" ${BLASLAPACKLIB}" - fi - AC_DEFINE([DISABLE_DAKOTA_CONFIG_H], [1], [enabling DAKOTA_CONFIG_H]) - AC_DEFINE([DAKOTA_HAVE_MPI], [1], [enabling Dakota with MPI]) - elif test "${DAKOTA_VERSION}" == "6.11"; then - if test "${BOOST_VERSION_MAJOR}" == "1"; then - if test "${BOOST_VERSION_MINOR}" == "55"; then - DAKOTAFLAGS="-DDISABLE_DAKOTA_CONFIG_H -DBOOST_MULTI_INDEX_DISABLE_SERIALIZATION -DDAKOTA_PLUGIN -DBOOST_DISABLE_ASSERTS -DDAKOTA_HAVE_BOOST_FS -DHAVE_UNISTD_H -DHAVE_SYSTEM -DHAVE_WORKING_FORK -DHAVE_WORKING_VFORK -DHAVE_SYS_WAIT_H -DHAVE_USLEEP -DDAKOTA_F90 -DDAKOTA_HAVE_MPI -DHAVE_PECOS -DHAVE_SURFPACK -DDAKOTA_UTILIB -DHAVE_ADAPTIVE_SAMPLING -DHAVE_CONMIN -DDAKOTA_DDACE -DHAVE_FSUDACE -DDAKOTA_HOPS -DHAVE_NCSU -DHAVE_NL2SOL -DHAVE_OPTPP -DDAKOTA_OPTPP -DHAVE_PSUADE -DHAVE_AMPL" - DAKOTALIB="-L${DAKOTA_ROOT}/lib -ldakota_src -ldream -lfsudace -lddace -lnomad -lpecos_src -llhs -llhs_mods -loptpp -lsurfpack -lconmin -ldakota_src_fortran -llhs_mod -lncsuopt -lsurfpack_fortran -lteuchos -lamplsolver -lcport -ldfftpack -lfsudace -lhopspack -lnidr -lpecos -lpsuade -lsparsegrid -L$BOOST_ROOT/lib -lboost_serialization -lboost_signals -lboost_regex -lboost_filesystem -lboost_system ${BLASLAPACKLIB}" - elif test "${BOOST_VERSION_MINOR}" == "72"; then - DAKOTAFLAGS="-DHAVE_CONFIG_H -DHAVE_CONFIG_H -DDISABLE_DAKOTA_CONFIG_H -DBOOST_DISABLE_ASSERTS -DHAVE_UNISTD_H -DHAVE_SYSTEM -DHAVE_WORKING_FORK -DHAVE_WORKING_VFORK -DHAVE_SYS_WAIT_H -DHAVE_USLEEP -DDAKOTA_F90 -DDAKOTA_HAVE_MPI -DHAVE_PECOS -DHAVE_SURFPACK -DHAVE_ADAPTIVE_SAMPLING -DHAVE_ESM -DHAVE_CONMIN -DHAVE_DDACE -DHAVE_DREAM -DHAVE_FSUDACE -DDAKOTA_HOPS -DHAVE_NCSU -DHAVE_NL2SOL -DHAVE_NOMAD -DHAVE_OPTPP -DDAKOTA_OPTPP -DHAVE_PSUADE -DHAVE_AMPL" - DAKOTALIB="-L${DAKOTA_ROOT}/lib -ldakota_src -ldakota_src_fortran -lnidr -lteuchosremainder -lteuchosnumerics -lteuchoscomm -lteuchosparameterlist -lteuchosparser -lteuchoscore -lpecos_util -lpecos_src -llhs -llhs_mods -llhs_mod -ldfftpack -lsparsegrid -lsurfpack -lsurfpack -lsurfpack_fortran -lapproxnn -lconmin -lddace -ldream -lfsudace -lhopspack -lncsuopt -lcport -lnomad -loptpp -lpsuade -lamplsolver -L${BOOST_ROOT}/lib -lboost_filesystem -lboost_program_options -lboost_regex -lboost_serialization -lboost_system ${BLASLAPACKLIB}" - fi - fi - AC_DEFINE([DISABLE_DAKOTA_CONFIG_H], [1], [enabling DAKOTA_CONFIG_H]) - AC_DEFINE([DAKOTA_HAVE_MPI], [1], [enabling Dakota with MPI]) - else - AC_MSG_ERROR([Dakota version not found or version (${DAKOTA_VERSION}) not supported!]); - fi - ;; - esac - - case ${DAKOTA_VERSION} in - @<:@1-9@:>@*.@<:@0-9@:>@*.@<:@0-9@:>@*) - DAKOTA_MAJOR=`echo ${DAKOTA_VERSION} | sed -e 's/^\(@<:@0-9@:>@*\)\..*/\1/'` - DAKOTA_MINOR=`echo ${DAKOTA_VERSION} | sed -e 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\)\..*/\1/'` - DAKOTA_BUILD=`echo ${DAKOTA_VERSION} | sed -e 's/^@<:@0-9@:>@*\.@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` - ;; - @<:@1-9@:>@*.@<:@0-9@:>@*) - DAKOTA_MAJOR=`echo ${DAKOTA_VERSION} | sed -e 's/^\(@<:@0-9@:>@*\)\..*/\1/'` - DAKOTA_MINOR=`echo ${DAKOTA_VERSION} | sed -e 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` - DAKOTA_BUILD=0 - ;; - *) - AC_MSG_ERROR([Dakota version (${DAKOTA_VERSION}) not supported!]) - ;; - esac - AC_MSG_CHECKING(for Dakota major version) - AC_MSG_RESULT(${DAKOTA_MAJOR}) - AC_DEFINE_UNQUOTED([_DAKOTA_MAJOR_], ${DAKOTA_MAJOR}, [Dakota major version number]) - AC_MSG_CHECKING(for Dakota minor version) - AC_MSG_RESULT(${DAKOTA_MINOR}) - AC_DEFINE_UNQUOTED([_DAKOTA_MINOR_], ${DAKOTA_MINOR}, [Dakota minor version number]) - AC_MSG_CHECKING(for Dakota build version) - AC_MSG_RESULT(${DAKOTA_BUILD}) - AC_DEFINE_UNQUOTED([_DAKOTA_BUILD_], ${DAKOTA_BUILD}, [Dakota build version number]) - - AC_DEFINE([_HAVE_DAKOTA_], [1], [with Dakota in ISSM src]) - AC_SUBST([DAKOTAINCL]) - AC_SUBST([DAKOTAFLAGS]) - AC_SUBST([DAKOTALIB]) - fi - AM_CONDITIONAL([ISSM_DAKOTA], [test "x${DAKOTA_MAJOR}" == "x6"]) - dnl }}} - dnl Python{{{ - AC_MSG_CHECKING([for Python]) - AC_ARG_WITH( - [python-dir], - AS_HELP_STRING([--with-python-dir=DIR], [Python root directory]), - [PYTHON_ROOT=${withval}], - [PYTHON_ROOT="no"] - ) - - AC_ARG_WITH( - [python-version], - AS_HELP_STRING([--with-python-version=DIR], [Python forced version]), - [PYTHON_VERSION=${withval}], - [PYTHON_VERSION="no"] - ) - if test "x${PYTHON_ROOT}" == "xno"; then - HAVE_PYTHON=no - HAVE_PYTHON3=no - else - HAVE_PYTHON=yes - if ! test -d "${PYTHON_ROOT}"; then - AC_MSG_ERROR([Python directory provided (${PYTHON_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_PYTHON}]) - AM_CONDITIONAL([PYTHON], [test "x${HAVE_PYTHON}" == "xyes"]) - - dnl Python specifics - if test "x${HAVE_PYTHON}" == "xyes"; then - if test "x${PYTHON_VERSION}" == "xno"; then - AC_MSG_CHECKING([for Python version]) - dnl Query Python for its version number. Getting [:3] seems to be - dnl the best way to do this: it's what "site.py" does in the - dnl standard library. - PYTHON_VERSION=$(${PYTHON_ROOT}/bin/python -c "import sys; print(sys.version[[:3]])") - AC_MSG_RESULT([${PYTHON_VERSION}]) - else - AC_MSG_RESULT([enforced Python version is ${PYTHON_VERSION}]) - fi - dnl Determine major version - PYTHON_MAJOR=${PYTHON_VERSION%.*} - AC_DEFINE_UNQUOTED([_PYTHON_MAJOR_], ${PYTHON_MAJOR}, [Python version major]) - if test "x${PYTHON_MAJOR}" == "x3"; then - HAVE_PYTHON3="yes" - else - HAVE_PYTHON3="no" - fi - - AC_MSG_CHECKING([for Python header file Python.h]) - dnl Python.h might be in different locations: - if test -f "${PYTHON_ROOT}/include/Python.h"; then - PYTHONINCL=-I${PYTHON_ROOT}/include - elif test -f "${PYTHON_ROOT}/include/python${PYTHON_VERSION}/Python.h"; then - PYTHONINCL=-I${PYTHON_ROOT}/include/python${PYTHON_VERSION} - elif test -f "${PYTHON_ROOT}/include/python${PYTHON_VERSION}m/Python.h"; then - PYTHONINCL=-I${PYTHON_ROOT}/include/python${PYTHON_VERSION}m - else - AC_MSG_ERROR([Python.h not found! Please locate this file and contact ISSM developers via forum or email.]); - fi - AC_MSG_RESULT([found]) - - AC_MSG_CHECKING([for Python library libpython]) - if ls ${PYTHON_ROOT}/lib/x86_64-linux-gnu/libpython${PYTHON_VERSION}m.* 1> /dev/null 2>&1; then - PYTHONLIB="-L${PYTHON_ROOT}/lib/x86_64-linux-gnu -lpython${PYTHON_VERSION}m" - elif ls ${PYTHON_ROOT}/lib/x86_64-linux-gnu/libpython${PYTHON_VERSION}.* 1> /dev/null 2>&1; then - PYTHONLIB="-L${PYTHON_ROOT}/lib/x86_64-linux-gnu -lpython${PYTHON_VERSION}" - elif ls ${PYTHON_ROOT}/lib/libpython${PYTHON_VERSION}m.* 1> /dev/null 2>&1; then - PYTHONLIB="-L${PYTHON_ROOT}/lib -lpython${PYTHON_VERSION}m" - elif ls ${PYTHON_ROOT}/lib/libpython${PYTHON_VERSION}.* 1> /dev/null 2>&1; then - PYTHONLIB="-L${PYTHON_ROOT}/lib -lpython${PYTHON_VERSION}" - elif ls ${PYTHON_ROOT}/lib64/libpython${PYTHON_VERSION}m.* 1> /dev/null 2>&1; then - PYTHONLIB="-L${PYTHON_ROOT}/lib64 -lpython${PYTHON_VERSION}m" - elif ls ${PYTHON_ROOT}/lib64/libpython${PYTHON_VERSION}.* 1> /dev/null 2>&1; then - PYTHONLIB="-L${PYTHON_ROOT}/lib64 -lpython${PYTHON_VERSION}" - else - AC_MSG_ERROR([libpython not found! Please locate this file and contact ISSM developers via forum or email.]); - fi - AC_MSG_RESULT([found]) - - PYWRAPPEREXT=.so - case "${host_os}" in - *darwin*) - PYTHONLINK="-dynamiclib" - ;; - *linux*) - PYTHONLINK="-shared" - ;; - *mingw*) - PYTHONLINK="-shared" - ;; - esac - AC_DEFINE([_HAVE_PYTHON_], [1], [with Python in ISSM src]) - AC_SUBST([PYTHONINCL]) - AC_SUBST([PYTHONLIB]) - PYTHONWRAPPEREXT=${PYWRAPPEREXT} - AC_SUBST([PYTHONWRAPPEREXT]) - AC_SUBST([PYTHONLINK]) - fi - AM_CONDITIONAL([PYTHON3], [test "x${HAVE_PYTHON3}" == "xyes"]) - dnl }}} - dnl NumPy{{{ - dnl NOTE: You can find NumPy by running, - dnl - dnl >>> import numpy - dnl >>> numpy.__file__ - dnl - dnl TODO: - dnl - Replace references to python-numpy with numpy (and similar terms) - dnl project-wide - dnl - AC_MSG_CHECKING(for python-numpy) - AC_ARG_WITH( - [python-numpy-dir], - AS_HELP_STRING([--with-python-numpy-dir=DIR], [python-numpy root directory]), - [PYTHON_NUMPY_ROOT=${withval}], - [PYTHON_NUMPY_ROOT="no"] - ) - if test "x${PYTHON_NUMPY_ROOT}" == "xno"; then - HAVE_PYTHON_NUMPY=no - else - HAVE_PYTHON_NUMPY=yes - if ! test -d "${PYTHON_NUMPY_ROOT}"; then - AC_MSG_ERROR([NumPy directory provided (${PYTHON_NUMPY_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_PYTHON_NUMPY}]) - - dnl NumPy libraries and header files - if test "x${HAVE_PYTHON_NUMPY}" == "xyes"; then - PYTHON_NUMPYINCL="-I${PYTHON_NUMPY_ROOT} -I${PYTHON_NUMPY_ROOT}/core/include/numpy" - AC_DEFINE([_HAVE_PYTHON_NUMPY_], [1], [with NumPy in ISSM src]) - AC_SUBST([PYTHON_NUMPYINCL]) - fi - dnl }}} - dnl Chaco{{{ - AC_MSG_CHECKING([for Chaco]) - AC_ARG_WITH( - [chaco-dir], - AS_HELP_STRING([--with-chaco-dir=DIR], [Chaco root directory]), - [CHACO_ROOT=${withval}], - [CHACO_ROOT="no"] - ) - if test "x${CHACO_ROOT}" == "xno"; then - HAVE_CHACO=no - else - HAVE_CHACO=yes - if ! test -d "${CHACO_ROOT}"; then - AC_MSG_ERROR([Chaco directory provided (${CHACO_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_CHACO}]) - AM_CONDITIONAL([CHACO], [test "x${HAVE_CHACO}" == "xyes"]) - - dnl Chaco libraries and header files - if test "x${HAVE_CHACO}" == "xyes"; then - CHACOINCL="-I${CHACO_ROOT}/include" - if test "${IS_MSYS2}" == "yes"; then - CHACOLIB="-Wl,-L${CHACO_ROOT}/lib -Wl,-lchacominusblas" - else - CHACOLIB="-L${CHACO_ROOT}/lib -lchacominusblas" - fi - AC_DEFINE([_HAVE_CHACO_], [1], [with Chaco in ISSM src]) - AC_SUBST([CHACOINCL]) - AC_SUBST([CHACOLIB]) - fi - dnl }}} - dnl ESMF{{{ - AC_MSG_CHECKING([for ESMF]) - AC_ARG_WITH( - [esmf-dir], - AS_HELP_STRING([--with-esmf-dir=DIR], [ESMF root directory]), - [ESMF_ROOT=${withval}], - [ESMF_ROOT="no"] - ) - if test "x${ESMF_ROOT}" == "xno"; then - HAVE_ESMF=no - else - HAVE_ESMF=yes - if ! test -d "${ESMF_ROOT}"; then - AC_MSG_ERROR([ESMF directory provided (${ESMF_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_ESMF}]) - - dnl ESMF libraries and header files - if test "x${HAVE_ESMF}" == "xyes"; then - ESMFINCL="-I${ESMF_ROOT}/include" - ESMFLIB="-L${ESMF_ROOT}/lib/libO/Linux.gfortran.64.mpich.default/ -lesmf" - AC_DEFINE([_HAVE_ESMF_], [1], [with ESMF in ISSM src]) - AC_SUBST([ESMFINCL]) - AC_SUBST([ESMFLIB]) - fi - AM_CONDITIONAL([ESMF], [test "x${HAVE_ESMF}" == "xyes"]) - dnl }}} - dnl CoDiPack{{{ - AC_MSG_CHECKING([for CoDiPack]) - AC_ARG_WITH( - [codipack-dir], - AS_HELP_STRING([--with-codipack-dir=DIR], [CoDiPack root directory]), - [CODIPACK_ROOT=${withval}], - [CODIPACK_ROOT="no"] - ) - if test "x${CODIPACK_ROOT}" == "xno"; then - HAVE_CODIPACK=no - else - HAVE_CODIPACK=yes - if ! test -d "${CODIPACK_ROOT}"; then - AC_MSG_ERROR([CoDiPack directory provided (${CODIPACK_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_CODIPACK}]) - - dnl CoDiPack libraries and header files - if test "x${HAVE_CODIPACK}" == "xyes"; then - - AC_MSG_CHECKING(for CoDiPack version) - CODIPACK_MAJOR=`cat ${CODIPACK_ROOT}/include/codi.hpp | grep "#define CODI_MAJOR_VERSION" | sed 's/#define CODI_MAJOR_VERSION//' | sed 's/ //g'` - CODIPACK_MINOR=`cat ${CODIPACK_ROOT}/include/codi.hpp | grep "#define CODI_MINOR_VERSION" | sed 's/#define CODI_MINOR_VERSION//' | sed 's/ //g'` - if test -z "${CODIPACK_MAJOR}"; then - CODIPACK_MAJOR=`cat ${CODIPACK_ROOT}/include/codi/configure.h | grep "#define CODI_MAJOR_VERSION" | sed 's/#define CODI_MAJOR_VERSION//' | sed 's/ //g'` - CODIPACK_MINOR=`cat ${CODIPACK_ROOT}/include/codi/configure.h | grep "#define CODI_MINOR_VERSION" | sed 's/#define CODI_MINOR_VERSION//' | sed 's/ //g'` - fi - if test -z "${CODIPACK_MAJOR}"; then - AC_MSG_ERROR([Couldn't determine CoDiPack version]) - fi - AC_DEFINE_UNQUOTED([_CODIPACK_MAJOR_], ${CODIPACK_MAJOR}, [CoDiPack version major]) - AC_DEFINE_UNQUOTED([_CODIPACK_MINOR_], ${CODIPACK_MINOR}, [CoDiPack version minor]) - AC_MSG_RESULT([${CODIPACK_MAJOR}.${CODIPACK_MINOR}]) - - CODIPACKINCL="-I${CODIPACK_ROOT}/include" - AC_DEFINE([_HAVE_CODIPACK_], [1], [with CoDiPack in ISSM src]) - AC_DEFINE([_HAVE_AD_], [1], [with AD in ISSM src]) - AC_SUBST([CODIPACKINCL]) - fi - AM_CONDITIONAL([CODIPACK], [test "x${HAVE_CODIPACK}" == "xyes"]) - AM_COND_IF(CODIPACK, [CXXFLAGS+=" -std=c++11"]) - dnl }}} - dnl Tape Allocation {{{ - AC_MSG_CHECKING(for tape allocation) - AC_ARG_ENABLE( - [tape-alloc], dnl feature - AS_HELP_STRING([--enable-tape-alloc], [turn tape allocation support on]), - [enable_tape_alloc=${enableval}], - [enable_tape_alloc=no] - ) - if test "x${enable_tape_alloc}" == "xyes"; then - AC_DEFINE([_AD_TAPE_ALLOC_], [1], [enable a priori tape allocation for AD]) - fi - AC_MSG_RESULT([${enable_tape_alloc}]) - dnl }}} - dnl ADOL-C {{{ - AC_MSG_CHECKING([for ADOL-C]) - AC_ARG_WITH( - [adolc-dir], - AS_HELP_STRING([--with-adolc-dir=DIR], [ADOL-C root directory]), - [ADOLC_ROOT=${withval}], - [ADOLC_ROOT="no"] - ) - if test "x${ADOLC_ROOT}" == "xno"; then - HAVE_ADOLC=no - else - HAVE_ADOLC=yes - if ! test -d "${ADOLC_ROOT}"; then - AC_MSG_ERROR([ADOL-C directory provided (${ADOLC_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_ADOLC}]) - - dnl ADOL-C libraries and header files - if test "x${HAVE_ADOLC}" == "xyes"; then - ADOLCINCL="-I${ADOLC_ROOT}/include" - dnl ADOLCLIB="-L${ADOLC_ROOT}/lib64 -ladolc" used to be the path - ADOLCLIB="-L${ADOLC_ROOT}/lib -ladolc" - AC_DEFINE([_HAVE_ADOLC_], [1], [with ADOL-C in ISSM src]) - AC_DEFINE([_HAVE_AD_], [1], [with AD in ISSM src]) - AC_SUBST([ADOLCINCL]) - AC_SUBST([ADOLCLIB]) - fi - AM_CONDITIONAL([ADOLC], [test "x${HAVE_ADOLC}" == "xyes"]) - AM_COND_IF(ADOLC, [CXXFLAGS+=" -std=c++11"]) - dnl }}} - dnl ADOL-C version{{{ - AC_MSG_CHECKING(for ADOL-C version) - AC_ARG_WITH( - [adolc-version], - AS_HELP_STRING([--with-adolc-version=number], [ADOL-C version]), - [ADOLC_VERSION=${withval}], - [ADOLC_VERSION=2] - ) - AC_DEFINE_UNQUOTED([_ADOLC_VERSION_], ${ADOLC_VERSION}, [ADOL-C version]) - AC_MSG_RESULT(${ADOLC_VERSION}) - dnl }}} - dnl ADIC2 {{{ - AC_MSG_CHECKING([for ADIC2]) - AC_ARG_WITH( - [adic2-dir], - AS_HELP_STRING([--with-adic2-dir=DIR], [ADIC2 root directory]), - [ADIC2_ROOT=${withval}], - [ADIC2_ROOT="no"] - ) - if test "x${ADIC2_ROOT}" == "xno"; then - HAVE_ADIC2=no - else - HAVE_ADIC2=yes - if ! test -d "${ADIC2_ROOT}"; then - AC_MSG_ERROR([ADIC2 directory provided (${ADIC2_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_ADIC2}]) - - dnl ADIC2 libraries and header files - if test "x${HAVE_ADIC2}" == "xyes"; then - ADIC2INCL="-DADIC2_DENSE -I${ADIC2_ROOT}/include -I${ADIC2_ROOT}/share/runtime_dense" - ADIC2LIB="" - AC_DEFINE([_HAVE_ADIC2_], [1], [with ADIC2 in ISSM src]) - AC_SUBST([ADIC2INCL]) - AC_SUBST([ADIC2LIB]) - fi - AM_CONDITIONAL([ADIC2], [test "x${HAVE_ADIC2}" == "xyes"]) - dnl }}} - dnl ATLAS {{{ - AC_MSG_CHECKING(for ATLAS and CBLAS libraries) - AC_ARG_WITH( - [atlas-dir], - AS_HELP_STRING([--with-atlas-dir=DIR], [ATLAS root directory]), - [ATLAS_ROOT=${withval}], - [ATLAS_ROOT="no"] - ) - if test "x${ATLAS_ROOT}" == "xno"; then - HAVE_ATLAS=no - else - HAVE_ATLAS=yes - if ! test -d "${ATLAS_ROOT}"; then - AC_MSG_ERROR([ATLAS directory provided (${ATLAS_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_ATLAS}]) - - dnl ATLAS libraries and header files - if test "x${HAVE_ATLAS}" == "xyes"; then - case "${host_os}" in - *darwin*) - ATLASLIB="-L${ATLAS_ROOT}/lib -lcblas -latlas -lm" - ;; - *linux*) - ATLASLIB="-L${ATLAS_ROOT}/lib -lcblas -latlas -lm" - ;; - *mingw*) - ATLASLIB="-L${ATLAS_ROOT}/lib -lcblas -latlas -lm" - ;; - esac - AC_DEFINE([_HAVE_ATLAS_], [1], [with ATLAS in ISSM src]) - AC_SUBST([ATLASLIB]) - fi - dnl }}} - dnl GSL{{{ - AC_MSG_CHECKING([for GSL]) - AC_ARG_WITH( - [gsl-dir], - AS_HELP_STRING([--with-gsl-dir=DIR], [GSL root directory]), - [GSL_ROOT=${withval}], - [GSL_ROOT="no"] - ) - if test "x${GSL_ROOT}" == "xno"; then - HAVE_GSL=no - else - HAVE_GSL=yes - if ! test -d "${GSL_ROOT}"; then - AC_MSG_ERROR([GSL directory provided (${GSL_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_GSL}]) - - dnl GSL libraries and header files - if test "x${HAVE_GSL}" == "xyes"; then - GSLINCL="-I${GSL_ROOT}/include" - if test "x${HAVE_ATLAS}" == "xyes"; then - GSLLIB="-dy -L${GSL_ROOT}/lib -lgsl -L${ATLAS_ROOT}/lib -lcblas -latlas -lm" - else - GSLLIB="-L${GSL_ROOT}/lib -lgsl -lgslcblas -lm" - fi - AC_DEFINE([_HAVE_GSL_], [1], [with GSL in ISSM src]) - AC_SUBST([GSLINCL]) - AC_SUBST([GSLLIB]) - fi - AM_CONDITIONAL([GSL], [test "x${HAVE_GSL}" == "xyes"]) - dnl }}} - dnl AMPI (ADOL-C){{{ - AC_MSG_CHECKING([for AMPI]) - AC_ARG_WITH( - [ampi-dir], - AS_HELP_STRING([--with-ampi-dir=DIR], [Adjoinable MPI root directory]), - [AMPI_ROOT=${withval}], - [AMPI_ROOT="no"] - ) - if test "x${AMPI_ROOT}" == "xno"; then - HAVE_AMPI=no - else - HAVE_AMPI=yes - if ! test -d "${AMPI_ROOT}"; then - AC_MSG_ERROR([AMPI directory provided (${AMPI_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_AMPI}]) - - dnl AMPI libraries and header files - if test "x${HAVE_AMPI}" == "xyes"; then - AMPIINCL="-I${AMPI_ROOT}/include" - if test "x${ADOLC_ROOT}" == "xno"; then - AC_MSG_ERROR([cannot run AMPI without ADOL-C]); - fi - dnl AMPILIB="-dy -L${AMPI_ROOT}/lib -lampiCommon -L${ADOLC_ROOT}/lib -ladolc -L${AMPI_ROOT}/lib -lampiCommon -lampiBookkeeping -lampiTape" - dnl AMPILIB="-dy -L${AMPI_ROOT}/lib -L${ADOLC_ROOT}/lib -Wl,--start-group,-lampiCommon,-ladolc,-lampiCommon,-lampiBookkeeping,-lampiTape,-lampiPlainC,-lampiADtoolStubsST,--end-group" - dnl AMPILIB="-L${AMPI_ROOT}/lib -L${ADOLC_ROOT}/lib -Wl,--start-group -lampiCommon -ladolc -lampiCommon -lampiBookkeeping -lampiTape -lampiPlainC -lampiADtoolStubsST -Wl,--end-group" - dnl AMPILIB="${AMPI_ROOT}/lib/libampiCommon.so ${ADOLC_ROOT}/lib/libadolc.so ${AMPI_ROOT}/lib/libampiCommon.so ${AMPI_ROOT}/lib/libampiBookkeeping.so ${AMPI_ROOT}/lib/libampiTape.so ${AMPI_ROOT}/lib/libampiPlainC.so ${AMPI_ROOT}/lib/libampiADtoolStubsST.so" - dnl AMPILIB="-dy -L${AMPI_ROOT}/lib -L${ADOLC_ROOT}/lib -lampiCommon -ladolc -lampiCommon -lampiBookkeeping -lampiTape -lampiPlainC -lampiADtoolStubsST" - AMPILIB="-dy -L${AMPI_ROOT}/lib -lampiCommon -lampiBookkeeping -lampiTape" - AC_DEFINE([_HAVE_AMPI_], [1], [with AMPI in ISSM src]) - AC_SUBST([AMPIINCL]) - AC_SUBST([AMPILIB]) - fi - AM_CONDITIONAL([AMPI], [test "x${HAVE_AMPI}" == "xyes"]) - dnl }}} - dnl Adjoint MPI (CoDiPack){{{ - AC_MSG_CHECKING([for Adjoint MPI]) - AC_ARG_WITH( - [adjointmpi-dir], - AS_HELP_STRING([--with-adjointmpi-dir=DIR], [Adjoint MPI root directory]), - [ADJOINTMPI_ROOT=${withval}], - [ADJOINTMPI_ROOT="no"] - ) - if test "x${ADJOINTMPI_ROOT}" == "xno"; then - HAVE_ADJOINTMPI=no - else - HAVE_ADJOINTMPI=yes - if ! test -d "${ADJOINTMPI_ROOT}"; then - AC_MSG_ERROR([Adjoint MPI directory provided (${ADJOINTMPI_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_ADJOINTMPI}]) - - dnl Adjoint MPI libraries and header files - if test "x${HAVE_ADJOINTMPI}" == "xyes"; then - if test "x${CODIPACK_ROOT}" == "xno"; then - AC_MSG_ERROR([cannot run Adjoint MPI without CoDiPack]); - fi - ADJOINTMPIINCL="-I${ADJOINTMPI_ROOT}/include" - ADJOINTMPILIB="-L${ADJOINTMPI_ROOT}/lib -lAMPI" - dnl Also set _HAVE_AMPI_, because the interface is (almost) the same as - dnl for AMPI - AC_DEFINE([_HAVE_AMPI_], [1], [with AMPI in ISSM src]) - AC_DEFINE([_HAVE_ADJOINTMPI_], [1], [with Adjoint MPI in ISSM src]) - AC_SUBST([ADJOINTMPIINCL]) - AC_SUBST([ADJOINTMPILIB]) - fi - AM_CONDITIONAL([ADJOINTMPI], [test "x${HAVE_ADJOINTMPI}" == "xyes"]) - dnl }}} - dnl MeDiPack (CoDiPack, ADOL-C dev){{{ - AC_MSG_CHECKING([for MeDiPack]) - AC_ARG_WITH( - [medipack-dir], - AS_HELP_STRING([--with-medipack-dir=DIR], [MeDiPack root directory]), - [MEDIPACK_ROOT=${withval}], - [MEDIPACK_ROOT="no"] - ) - if test "x${MEDIPACK_ROOT}" == "xno"; then - HAVE_MEDIPACK=no - else - HAVE_MEDIPACK=yes - if ! test -d "${MEDIPACK_ROOT}"; then - AC_MSG_ERROR([MeDiPack directory provided (${MEDIPACK_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_MEDIPACK}]) - - dnl MeDiPack libraries and header files - if test "x${HAVE_MEDIPACK}" == "xyes"; then - if test "x${CODIPACK_ROOT}" == "xno"; then - AC_MSG_ERROR([cannot run MeDiPack without CoDiPack]); - fi - MEDIPACKINCL="-I${MEDIPACK_ROOT}/include -I${MEDIPACK_ROOT}/src" - dnl Also set _HAVE_AMPI_, because the interface is (almost) the same as - dnl for AMPI - AC_DEFINE([_HAVE_AMPI_], [1], [with AMPI in ISSM src]) - AC_DEFINE([_HAVE_MEDIPACK_], [1], [with MeDiPack in ISSM src]) - AC_SUBST([MEDIPACKINCL]) - fi - AM_CONDITIONAL([MEDIPACK], [test "x${HAVE_MEDIPACK}" == "xyes"]) - dnl }}} - dnl HDF5 {{{ - AC_MSG_CHECKING(for HDF5 libraries) - AC_ARG_WITH( - [hdf5-dir], - AS_HELP_STRING([--with-hdf5-dir=DIR], [HDF5 root directory]), - [HDF5_ROOT=${withval}], - [HDF5_ROOT="no"] - ) - if test "x${HDF5_ROOT}" == "xno"; then - HAVE_HDF5=no - else - HAVE_HDF5=yes - if ! test -d "${HDF5_ROOT}"; then - AC_MSG_ERROR([HDF5 directory provided (${HDF5_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_HDF5}]) - - dnl HDF5 libraries and header files - dnl - dnl TODO: Add check for if we need to link to libhdf5_fortran and - dnl libhdf5hl_fortran, if and when necessary. - dnl - if test "x${HAVE_HDF5}" == "xyes"; then - case "${host_os}" in - *darwin*) - HDF5LIB="-L${HDF5_ROOT}/lib -lhdf5 -lhdf5_hl" - ;; - *linux*) - HDF5LIB="-L${HDF5_ROOT}/lib -lhdf5 -lhdf5_hl" - ;; - *mingw*) - HDF5LIB="-L${HDF5_ROOT}/lib -lhdf5 -lhdf5_hl" - ;; - esac - AC_DEFINE([_HAVE_HDF5_], [1], [with HDF5 in ISSM src]) - AC_SUBST([HDF5LIB]) - fi - dnl }}} - dnl PETSc{{{ - AC_MSG_CHECKING([for PETSc]) - AC_ARG_WITH( - [petsc-dir], - AS_HELP_STRING([--with-petsc-dir=DIR], [PETSc root directory, necessary for parallel build]), - [PETSC_ROOT=${withval}], - [PETSC_ROOT="no"] - ) - if test "x${PETSC_ROOT}" == "xno"; then - HAVE_PETSC=no - else - HAVE_PETSC=yes - if ! test -d "${PETSC_ROOT}"; then - AC_MSG_ERROR([PETSc directory provided (${PETSC_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_PETSC}]) - AM_CONDITIONAL([PETSC], [test "x${HAVE_PETSC}" == "xyes"]) - - dnl PETSc libraries and header files - if test "x${HAVE_PETSC}" == "xyes"; then - if ! test -f "${PETSC_ROOT}/include/petscversion.h"; then - AC_MSG_ERROR([PETSc not instaled correctly: file (${PETSC_ROOT}/include/petscversion.h) does not exist!]); - fi - - AC_MSG_CHECKING(for PETSc version) - PETSC_MAJOR=`cat ${PETSC_ROOT}/include/petscversion.h | grep "#define PETSC_VERSION_MAJOR" | sed 's/#define PETSC_VERSION_MAJOR//' | sed 's/ //g'` - PETSC_MINOR=`cat ${PETSC_ROOT}/include/petscversion.h | grep "#define PETSC_VERSION_MINOR" | sed 's/#define PETSC_VERSION_MINOR//' | sed 's/ //g'` - AC_DEFINE_UNQUOTED([_PETSC_MAJOR_], ${PETSC_MAJOR}, [PETSc version major]) - AC_DEFINE_UNQUOTED([_PETSC_MINOR_], ${PETSC_MINOR}, [PETSc version minor]) - AC_MSG_RESULT([${PETSC_MAJOR}.${PETSC_MINOR}]) - - AC_MSG_CHECKING(whether PETSc is the development version) - PETSC_RELEASE=`cat ${PETSC_ROOT}/include/petscversion.h | grep "#define PETSC_VERSION_RELEASE" | sed 's/#define PETSC_VERSION_RELEASE//' | sed 's/ //g'` - if test "${PETSC_RELEASE}" == "0"; then - AC_DEFINE([_HAVE_PETSCDEV_], [1], [with PETSc-dev]) - AC_MSG_RESULT([yes]) - else - AC_MSG_RESULT([no]) - fi - - AC_ARG_WITH( - [petsc-arch], - AS_HELP_STRING([--with-petsc-arch=DIR], [PETSc arch, necessary for PETSc < 3.0]), - [PETSC_ARCH=${withval}], - [PETSC_ARCH=""] - ) - - AC_MSG_CHECKING(for PETSc libraries and header files in ${PETSC_ROOT}) - dnl To get PETSc's libraries, - dnl - dnl cd $ISSM_DIR/externalpackages/petsc/src - dnl make getlinklibs - dnl - PETSCINCL=" -I${PETSC_ROOT}/include" - dnl Add other location (not needed anymore since at least PETSc 3.0) - if test -n "${PETSC_ARCH}" && test -d "${PETSC_ROOT}/${PETSC_ARCH}/include"; then - PETSCINCL+=" ${PETSC_ROOT}/${PETSC_ARCH}/include" - fi - if test -n "${PETSC_ARCH}" && test -d "${PETSC_ROOT}/include/${PETSC_ARCH}"; then - PETSCINCL+=" ${PETSC_ROOT}/include/${PETSC_ARCH}" - fi - - case "${host_os}" in - *darwin*) - if test ${PETSC_MAJOR} -lt 3; then - PETSCLIB="-L${PETSC_ROOT}/lib -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetscsnes -lpetscts -lpetsc" - else - PETSCLIB="-L${PETSC_ROOT}/lib -lpetsc" - if test ${PETSC_MAJOR} -gt 3 || test ${PETSC_MINOR} -ge 3; then - PETSCLIB+=" -lmetis" - fi - fi - ;; - *linux*) - if test ${PETSC_MAJOR} -lt 3; then - PETSCLIB="-L${PETSC_ROOT}/lib -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetscsnes -lpetscts -lmpiuni -lpetsc" - else - PETSCLIB="-L${PETSC_ROOT}/lib -lpetsc -ldl" - if test ${PETSC_MAJOR} -gt 3 || test ${PETSC_MINOR} -ge 3; then - PETSCLIB+=" -lparmetis -lmetis" - fi - fi - if test "x$host_os_version" = "x3.0.101-0.31.1_1.0502.8394-cray_gem_s"; then - PETSCLIB="-L${PETSC_ROOT}/lib -lcraypetsc_gnu_real -lmetis" - fi - if test x$HOST = "xmaui01"; then - PETSCLIB="-L${PETSC_ROOT}/lib -lcraypetsc_intel_real -lmetis" - fi - ;; - *mingw*) - PETSCLIB="-Wl,-L${PETSC_ROOT}/lib -Wl,-lpetsc" - ;; - esac - AC_MSG_RESULT([done]) - AC_DEFINE([_HAVE_PETSC_], [1], [with PETSc in ISSM src]) - AC_SUBST([PETSCINCL]) - AC_SUBST([PETSCLIB]) - fi - dnl }}} - dnl MPI{{{ - AC_MSG_CHECKING(for MPI) - AC_ARG_WITH( - [mpi-include], - AS_HELP_STRING([--with-mpi-include=DIR], [MPI include directory, necessary for parallel build]), - [MPI_INCLUDE=${withval}], - [MPI_INCLUDE=""] - ) - AC_ARG_WITH( - [mpi-libdir], - AS_HELP_STRING([--with-mpi-libdir=DIR], [MPI library directory, necessary for parallel build]), - [MPI_LIBDIR=${withval}], - [MPI_LIBDIR=""] - ) - AC_ARG_WITH( - [mpi-libflags], - AS_HELP_STRING([--with-mpi-libflags=LIBS], [MPI libraries to be used, necessary for parallel build]), - [MPI_LIBFLAGS=${withval}], - [MPI_LIBFLAGS=""] - ) - if test -z "${MPI_INCLUDE}"; then - HAVE_MPI=no - else - HAVE_MPI=yes - - dnl Processing for Windows - dnl - dnl NOTE: We know $VENDOR cannot be empty at this point, so no need to - dnl check again in the following conditionals - dnl - if test "${VENDOR}" == "intel-win7-32"; then - MPI_LIBDIR=`cygpath -m ${MPI_LIBDIR}` - MPI_INCLUDE=`cygpath -m ${MPI_INCLUDE}` - elif test "${VENDOR}" == "intel-win7-64"; then - MPI_LIBDIR="/I`cygpath -m ${MPI_LIBDIR}`" - MPI_INCLUDE=`cygpath -m ${MPI_INCLUDE}` - elif test "${VENDOR}" == "MSVC-Win64" || test "${VENDOR}" == "MSVC-Win64-par"; then - MPI_LIBDIR=`cygpath -m ${MPI_LIBDIR}` - MPI_INCLUDE=`cygpath -m ${MPI_INCLUDE}` - fi - - if test -z "${MPI_LIBDIR}"; then - MPILIB="${MPI_LIBFLAGS}" - else - MPILIB="${MPI_LIBDIR} ${MPI_LIBFLAGS}" - fi - - if test "x${IS_WINDOWS}" == "xyes"; then - MPIINCL=/I"${MPI_INCLUDE}" - else - MPIINCL="-I${MPI_INCLUDE}" - fi - - AC_DEFINE([_HAVE_MPI_], [1], [with MPI in ISSM src]) - AC_DEFINE([HAVE_MPI], [1], [MPI flag for Dakota (DO NOT REMOVE)]) - AC_SUBST([MPIINCL]) - AC_SUBST([MPILIB]) - fi - AM_CONDITIONAL([MPI], [test "x${HAVE_MPI}" == "xyes"]) - AC_MSG_RESULT([${HAVE_MPI}]) - dnl }}} - dnl SCOTCH{{{ - AC_MSG_CHECKING([for SCOTCH]) - AC_ARG_WITH( - [scotch-dir], - AS_HELP_STRING([--with-scotch-dir=DIR], [SCOTCH root directory]), - [SCOTCH_ROOT=$withval], - [SCOTCH_ROOT="no"] - ) - if test "x${SCOTCH_ROOT}" == "xno"; then - HAVE_SCOTCH=no - else - HAVE_SCOTCH=yes - if ! test -d "${SCOTCH_ROOT}"; then - AC_MSG_ERROR([SCOTCH directory provided (${SCOTCH_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_SCOTCH}]) - AM_CONDITIONAL([SCOTCH], [test "x${HAVE_SCOTCH}" == "xyes"]) - - dnl SCOTCH libraries and header files - if test "x${HAVE_SCOTCH}" == "xyes"; then - if test "x${SCOTCH_ROOT}" == "x${PETSC_ROOT}"; then - AC_DEFINE([_PETSC_SCOTCH_], [1], [is SCOTCH installed via PETSc]) - SCOTCHINCL="-DNOFILEIO -I${SCOTCH_ROOT}/include -DSCOTCH_VERSION=\\\"UNKNOWN\\\"" - SCOTCHLIB="-L${SCOTCH_ROOT}/lib -lnfioscotch -lnfioscotcherr -lnfioscotcherrexit " - else - SCOTCHINCL="-I${SCOTCH_ROOT}/include" - SCOTCHLIB="-L${SCOTCH_ROOT}/lib " - if test "x${HAVE_MPI}" == "xyes"; then - SCOTCHLIB+="-lptesmumps -lptscotch -lptscotcherr -lptscotcherrexit -lscotch" - else - SCOTCHLIB+="-lscotch -lscotcherr -lscotcherrexit" - fi - fi - AC_DEFINE([_HAVE_SCOTCH_], [1], [with SCOTCH in ISSM src]) - AC_SUBST([SCOTCHINCL]) - AC_SUBST([SCOTCHLIB]) - fi - dnl }}} - dnl METIS{{{ - AC_MSG_CHECKING([for METIS]) - AC_ARG_WITH( - [metis-dir], - AS_HELP_STRING([--with-metis-dir=DIR], [METIS root directory, necessary for serial build]), - [METIS_ROOT=${withval}], - [METIS_ROOT="no"] - ) - HAVE_METIS=no - if test "x${METIS_ROOT}" == "xno"; then - dnl Check if METIS was installed via PETSc - if test -f ${PETSC_ROOT}/install/include/metis.h; then - HAVE_METIS=yes - METIS_ROOT="${PETSC_ROOT}" - fi - else - if ! test -d "${METIS_ROOT}"; then - AC_MSG_ERROR([METIS directory provided (${METIS_ROOT}) does not exist!]); - fi + + else + HAVE_TRIANGLE=no + fi + AC_MSG_RESULT($HAVE_TRIANGLE) + + AC_MSG_CHECKING(for triangle and parallel status) + if test $HAVE_TRIANGLE = no; then + if test "$SERIAL_VALUE" = "yes" ; then + AC_MSG_ERROR([--with-triangle-dir missing. Triangle is needed to run ISSM serially!]) + fi + fi + AC_MSG_RESULT(ok) + + + dnl Metis directory + AC_ARG_WITH([metis-dir], + AS_HELP_STRING([--with-metis-dir = DIR], + [metis root directory. necessary for serial build]), + [METIS_ROOT=$withval],[METIS_ROOT=""]) + + if test -d "$METIS_ROOT"; then + + AC_MSG_CHECKING(for Metis headers and libraries in $METIS_ROOT) + + dnl defaults HAVE_METIS=yes - fi - if test "${HAVE_METIS}" = "yes"; then - METIS_VERSION=$(grep "#define METIS_VER_MAJOR" ${METIS_ROOT}/include/metis.h | sed 's|.*METIS_VER_MAJOR[[:space:]]*||') - dnl METIS libraries and header files - if test "x${METIS_VERSION}" == "x4"; then - METISINCL="-I${METIS_ROOT}/Lib" - case "${host_os}" in - *darwin*) - METISLIB="-L${METIS_ROOT} -lmetis" - ;; - *linux*) - METISLIB="-L${METIS_ROOT} -lmetis" - ;; - *mingw*) - METISLIB="-Wl,-L${METIS_ROOT}/lib -Wl,-lmetis" - ;; - esac - elif test "x${METIS_VERSION}" == "x5"; then - METISINCL="-I${METIS_ROOT}/include" - case "${host_os}" in - *darwin*) - METISLIB="-L${METIS_ROOT}/lib -lmetis" - ;; - *linux*) - METISLIB="-L${METIS_ROOT}/lib -lmetis" - ;; - *mingw*) - METISLIB="-Wl,-L${METIS_ROOT}/lib -Wl,-lmetis" - ;; - esac - else - AC_MSG_ERROR([METIS version ${METIS_VERSION} not yet supported! Please contact ISSM developers via forum or email.]) - fi - AC_DEFINE([_HAVE_METIS_], [1], [with METIS in ISSM src]) - AC_DEFINE_UNQUOTED([_METIS_VERSION_], ${METIS_VERSION}, [METIS version number]) + METISINCL=-I"$METIS_ROOT/Lib" + METISLIB=-L"$METIS_ROOT/ -lmetis" + + AC_DEFINE([_HAVE_METIS_],[1],[with Metis in ISSM src]) AC_SUBST([METISINCL]) AC_SUBST([METISLIB]) - fi - AC_MSG_RESULT([${HAVE_METIS}]) - AM_CONDITIONAL([METIS], [test "x${HAVE_METIS}" = "xyes"]) - dnl }}} - dnl ParMETIS{{{ - AC_MSG_CHECKING([for ParMETIS]) - AC_ARG_WITH( - [parmetis-dir], - AS_HELP_STRING([--with-parmetis-dir=DIR], [ParMETIS root directory, necessary for parallel build]), - [PARMETIS_ROOT=${withval}], - [PARMETIS_ROOT="no"] - ) - HAVE_PARMETIS=no - if test "x${PARMETIS_ROOT}" == "xno"; then - dnl Check if ParMETIS was installed via PETSc - if test -f ${PETSC_ROOT}/install/include/parmetis.h; then - HAVE_PARMETIS="yes" - PARMETIS_ROOT="${PETSC_ROOT}" - fi - else - if ! test -d "${PARMETIS_ROOT}"; then - AC_MSG_ERROR([ParMETIS directory provided (${PARMETIS_ROOT}) does not exist!]); - fi - if ! test -d "${METIS_ROOT}"; then - AC_MSG_ERROR([If supplying path to ParMETIS with option --with-parmetis-dir, must also supply path to METIS with option --with-metis-dir]); - fi - HAVE_PARMETIS="yes" - fi - if test "${HAVE_PARMETIS}" == "yes"; then - #PARMETIS_VERSION=$(grep "#define PARMETIS_MAJOR_VERSION" ${PARMETIS_ROOT}/include/parmetis.h | sed 's|.*PARMETIS_MAJOR_VERSION[[:space:]]*||') - dnl METIS libraries and header files - #if test "x${PARMETIS_VERSION}" == "x4"; then - PARMETISINCL="-I${PARMETIS_ROOT}/include" - case "${host_os}" in - *darwin*) - PARMETISLIB="-L${PARMETIS_ROOT}/lib -lparmetis" - ;; - *linux*) - PARMETISLIB="-L${PARMETIS_ROOT}/lib -lparmetis" - ;; - *mingw*) - PARMETISLIB="-Wl,-L${PARMETIS_ROOT}/lib -Wl,-lparmetis" - ;; - esac - #else - # AC_MSG_ERROR([ParMETIS version ${PARMETIS_VERSION} not yet supported! Please contact ISSM developers via forum or email.]) - #fi - AC_DEFINE([_HAVE_PARMETIS_], [1], [with ParMETIS in ISSM src]) - #AC_DEFINE([_PARMETIS_VERSION_], [${PARMETIS_VERSION}], [ParMETIS version number]) - AC_SUBST([PARMETISINCL]) - AC_SUBST([PARMETISLIB]) - fi - AC_MSG_RESULT([${HAVE_PARMETIS}]) - AM_CONDITIONAL([PARMETIS], [test "x${HAVE_PARMETIS}" = "xyes"]) - dnl }}} - dnl Toolkit for Advanced Optimization (TAO){{{ - AC_MSG_CHECKING([for TAO]) - AC_ARG_WITH( - [tao-dir], - AS_HELP_STRING([--with-tao-dir=DIR], [TAO root directory]), - [TAO_ROOT=${withval}], - [TAO_ROOT="no"] - ) - if test "x${HAVE_PETSC}" == "xyes" && test "x${PETSC_MAJOR}" == "x3" && test ${PETSC_MINOR} -ge 5; then - dnl In PETSc >= 3.5, TAO is provided - HAVE_TAO="yes" - AC_DEFINE([_HAVE_TAO_], [1], [with TAO in ISSM src]) - AC_MSG_RESULT([${HAVE_TAO}]) - else - if test "x${TAO_ROOT}" == "xno"; then - HAVE_TAO=no + else + HAVE_METIS=no + fi + + if test $HAVE_METIS = no; then + AC_MSG_ERROR([--with-metis-dir missing. Metis is needed to run ISSM]); + else + AC_MSG_RESULT($HAVE_METIS) + fi + + dnl Mpi options! + AC_MSG_CHECKING(for mpi...) + AC_ARG_WITH([mpi-lib], + AS_HELP_STRING([--with-mpi-lib = otions], + [mpi options, for ex: "-L$MPIROOT -lmpich]), + [MPILIB=$withval],[MPILIB=""]) + + AC_ARG_WITH([mpi-include], + AS_HELP_STRING([--with-mpi-include = DIR], + [mpi include directory, necessary for parallel build]), + [MPI_INCLUDE=$withval],[MPI_INCLUDE=""]) + + dnl check that --with-mpi-include and --with-mpi-lib have been provided + if test -z "$MPILIB" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + AC_MSG_ERROR([empty --with-mpi-lib options! MPI is needed to run ISSM in paralle!]) + fi + else + if test -z "$MPI_INCLUDE" ; then + if test "$PARALLEL_VALUE" = "yes" ; then + AC_MSG_ERROR([empty --with-mpi-include directory! MPI is needed to run ISSM in paralle!]) + fi else - HAVE_TAO=yes - if ! test -d "${TAO_ROOT}"; then - AC_MSG_ERROR([TAO directory provided (${TAO_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_TAO}]) - - dnl TAO libraries and header files - if test "x${HAVE_TAO}" == "xyes"; then - TAOINCL="-I${TAO_ROOT} -I${TAO_ROOT}/include -I${TAO_ROOT}/bmake" - TAOLIB="-L${TAO_ROOT}/lib -ltao -lpetsc" - AC_DEFINE([_HAVE_TAO_], [1], [with Tao in ISSM src]) - AC_SUBST([TAOINCL]) - AC_SUBST([TAOLIB]) - fi - fi - dnl }}} - dnl M1QN3{{{ - AC_MSG_CHECKING([for M1QN3]) - AC_ARG_WITH( - [m1qn3-dir], - AS_HELP_STRING([--with-m1qn3-dir=DIR], [M1QN3 root directory]), - [M1QN3_ROOT=${withval}], - [M1QN3_ROOT="no"] - ) - if test "x${M1QN3_ROOT}" == "xno"; then - HAVE_M1QN3=no - else - HAVE_M1QN3=yes - if ! test -d "${M1QN3_ROOT}"; then - AC_MSG_ERROR([M1QN3 directory provided (${M1QN3_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_M1QN3}]) - - dnl M1QN3 libraries and header files - if test "x${HAVE_M1QN3}" == "xyes"; then - if test "${IS_MSYS2}" == "yes"; then - M1QN3LIB="-Wl,-L${M1QN3_ROOT} -Wl,-lm1qn3 -Wl,-lddot" + HAVE_MPI=yes + MPIINCL=-I"$MPI_INCLUDE/" + + AC_DEFINE([_HAVE_MPI_],[1],[with Mpi in ISSM src]) + AC_SUBST([MPIINCL]) + AC_SUBST([MPILIB]) + fi + fi + AC_MSG_RESULT(done) + + dnl Petsc directory and architecture + AC_ARG_WITH([petsc-dir], + AS_HELP_STRING([--with-petsc-dir = DIR], + [petsc root directory, necessary for parallel build]), + [PETSC_ROOT=$withval],[PETSC_ROOT=""]) + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ROOT" = "" ; then + AC_MSG_ERROR([missing --with-petsc-dir argument for parallel compilation!]) + fi + fi + + AC_ARG_WITH([petsc-arch], + AS_HELP_STRING([--with-petsc-arch = DIR], + [petsc arch , necessary for parallel build]), + [PETSC_ARCH=$withval],[PETSC_ARCH=""]) + + if test "$PARALLEL_VALUE" = "yes" ; then + if test "$PETSC_ARCH" = "" ; then + AC_MSG_ERROR([missing --with-petsc-arch argument for parallel compilation!]) + fi + fi + + AC_MSG_CHECKING(for Petsc headers and libraries in $PETSC_ROOT for architecture $PETSC_ARCH) + + if test -d "$PETSC_ROOT"; then + + if test -d "$PETSC_ROOT/bmake/$PETSC_ARCH"; then + + PETSCINCL="-I$PETSC_ROOT/include -I$PETSC_ROOT/ -I$PETSC_ROOT/bmake/$PETSC_ARCH -I$PETSC_ROOT/src/mat/impls/dense/mpi/plapack/" + PETSCLIB="-L$PETSC_ROOT/lib/$PETSC_ARCH -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lpetscsnes -lpetscts" + + + + AC_DEFINE([_HAVE_PETSC_],[1],[with Petsc in ISSM src]) + AC_SUBST([PETSCINCL]) + AC_SUBST([PETSCLIB]) + + HAVE_PETSC=yes else - M1QN3LIB="${M1QN3_ROOT}/libm1qn3.a ${M1QN3_ROOT}/libddot.a" - fi - AC_DEFINE([_HAVE_M1QN3_], [1], [with M1QN3 in ISSM src]) - AC_SUBST([M1QN3LIB]) - fi - dnl }}} - dnl PROJ{{{ - AC_MSG_CHECKING([for PROJ]) - AC_ARG_WITH( - [proj-dir], - AS_HELP_STRING([--with-proj-dir=DIR], [PROJ root directory]), - [PROJ_ROOT=${withval}], - [PROJ_ROOT="no"] - ) - if test "x${PROJ_ROOT}" == "xno"; then - HAVE_PROJ=no - else - HAVE_PROJ=yes - if ! test -d "${PROJ_ROOT}"; then - AC_MSG_ERROR([PROJ directory provided (${PROJ_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_PROJ}]) - - dnl PROJ libraries and header files - if test "x${HAVE_PROJ}" == "xyes"; then - PROJINCL="-I${PROJ_ROOT}/include" - PROJLIB="-L${PROJ_ROOT}/lib -lproj" - AC_DEFINE([_HAVE_PROJ_], [1], [with PROJ in ISSM src]) - AC_SUBST([PROJINCL]) - AC_SUBST([PROJLIB]) - fi - AM_CONDITIONAL([PROJ], [test "x${HAVE_PROJ}" == "xyes"]) - dnl }}} - dnl SLEPc{{{ - AC_MSG_CHECKING([for SLEPc]) - AC_ARG_WITH( - [slepc-dir], - AS_HELP_STRING([--with-slepc-dir=DIR], [SLEPc root directory]), - [SLEPC_ROOT=${withval}], - [SLEPC_ROOT="no"] - ) - if test "x${SLEPC_ROOT}" == "xno"; then - HAVE_SLEPC=no - else + HAVE_PETSC=no + fi + else + HAVE_PETSC=no + fi + + if test $HAVE_PETSC = no; then + if test "$PARALLEL_VALUE" = "yes" ; then + AC_MSG_ERROR([could not find petsc. user should specify --with-petsc-dir and --with-petsc-arch options. Petsc is needed to run ISSM in paralle!]) + fi + else + AC_MSG_RESULT($HAVE_PETSC) + fi + + + dnl Slepc directory + AC_ARG_WITH([slepc-dir], + AS_HELP_STRING([--with-slepc-dir = DIR], + [slepc root directory]), + [SLEPC_ROOT=$withval],[SLEPC_ROOT=""]) + + AC_MSG_CHECKING(for Slepc headers and libraries in $SLEPC_ROOT) + if test -d "$SLEPC_ROOT"; then + + + dnl defaults HAVE_SLEPC=yes - if ! test -d "${SLEPC_ROOT}"; then - AC_MSG_ERROR([SLEPc directory provided (${SLEPC_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_SLEPC}]) - - dnl SLEPc libraries and header files - if test "x${HAVE_SLEPC}" == "xyes"; then - SLEPCINCL="-I${SLEPC_ROOT}/include" - SLEPCLIB="-L${SLEPC_ROOT}/lib -lslepc" - AC_DEFINE([_HAVE_SLEPC_], [1], [with SLEPc in ISSM src]) + SLEPCINCL=-I"$SLEPC_ROOT/include" + SLEPCLIB=-L"$SLEPC_ROOT/lib/ -lslepc" + + AC_DEFINE([_HAVE_SLEPC_],[1],[with Slepc in ISSM src]) AC_SUBST([SLEPCINCL]) AC_SUBST([SLEPCLIB]) - fi - dnl }}} - dnl shapelib{{{ - AC_MSG_CHECKING([for shapelib]) - AC_ARG_WITH( - [shapelib-dir], - AS_HELP_STRING([--with-shapelib-dir=DIR], [shapelib root directory]), - [SHAPELIB_ROOT=${withval}], - [SHAPELIB_ROOT="no"] - ) - if test "x${SHAPELIB_ROOT}" == "xno"; then - HAVE_SHAPELIB=no - else - HAVE_SHAPELIB=yes - if ! test -d "${SHAPELIB_ROOT}"; then - AC_MSG_ERROR([shapelib directory provided (${SHAPELIB_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_SHAPELIB}]) - - dnl shapelib libraries and header files - if test "x${HAVE_SHAPELIB}" == "xyes"; then - SHAPELIBINCL="-I${SHAPELIB_ROOT}/include" - if test -f "${SHAPELIB_ROOT}/lib/libshp.a"; then - SHAPELIBLIB="-L${SHAPELIB_ROOT}/lib -lshp" - else - SHAPELIBLIB="-L${SHAPELIB_ROOT}/lib -lshape" - fi - AC_DEFINE([_HAVE_SHAPELIB_], [1], [with shapelib in ISSM src]) - AC_SUBST([SHAPELIBINCL]) - AC_SUBST([SHAPELIBLIB]) - fi - AM_CONDITIONAL([SHP], [test "x${HAVE_SHAPELIB}" == "xyes"]) - dnl }}} - dnl ScaLAPACK{{{ - dnl NOTE: User should supply path to root directory or libraries, but not both - dnl - AC_MSG_CHECKING([for ScaLAPACK]) - AC_ARG_WITH( - [scalapack-dir], - AS_HELP_STRING([--with-scalapack-dir=DIR], [ScaLAPACK root directory]), - [SCALAPACK_ROOT=${withval}], - [SCALAPACK_ROOT="no"] - ) - AC_ARG_WITH( - [scalapack-lib], - AS_HELP_STRING([--with-scalapack-lib=LIBS], [ScaLAPACK libraries to link to]), - [SCALAPACKLIB=${withval}], - [SCALAPACKLIB="no"] - ) - if test "x${SCALAPACK_ROOT}" == "xno" && test "x${SCALAPACKLIB}" == "xno"; then + else + HAVE_SLEPC=no + fi + AC_MSG_RESULT($HAVE_SLEPC) + + dnl Scalapack directory + AC_ARG_WITH([scalapack-dir], + AS_HELP_STRING([--with-scalapack-dir = DIR], + [scalapack root directory]), + [SCALAPACK_ROOT=$withval],[SCALAPACK_ROOT=""]) + + AC_MSG_CHECKING(for Scalapack headers and libraries in $SCALAPACK_ROOT) + if test -d "$SCALAPACK_ROOT"; then + + + dnl defaults + HAVE_SCALAPACK=yes + SCALAPACKLIB=-L"$SCALAPACK_ROOT/ -lscalapack" + + AC_DEFINE([_HAVE_SCALAPACK_],[1],[with Scalapack in ISSM src]) + AC_SUBST([SCALAPACKLIB]) + else HAVE_SCALAPACK=no - SCALAPACKLIB="" - elif test "x${SCALAPACK_ROOT}" != "xno"; then - if ! test -d "${SCALAPACK_ROOT}"; then - AC_MSG_ERROR([ScaLAPACK directory provided (${SCALAPACK_ROOT}) does not exist!]); - fi - HAVE_SCALAPACK=yes - if test "${VENDOR}" == "win-msys2"; then - SCALAPACKLIB="-Wl,-L${SCALAPACK_ROOT}/lib -Wl,-lscalapack" - else - SCALAPACKLIB="-L${SCALAPACK_ROOT}/lib -lscalapack" - fi - elif test "x${SCALAPACKLIB}" != "xno"; then - dnl Value of SCALAPACKLIB should be valid here, so no need to set it (as above) - HAVE_SCALAPACK=yes - else - AC_MSG_ERROR([use --with-scalapack-dir or --with-scalapack-lib, but not both]) - fi - AC_MSG_RESULT([${HAVE_SCALAPACK}]) - - dnl ScaLAPACK libraries and header files - if test "x${HAVE_SCALAPACK}" == "xyes"; then - AC_DEFINE([_HAVE_SCALAPACK_], [1], [with ScaLAPACK in ISSM src]) - AC_SUBST([SCALAPACKLIB]) - fi - dnl }}} - dnl BLAS/LAPACK{{{ - AC_MSG_CHECKING([for BLAS/LAPACK]) - AC_ARG_WITH( - [blas-dir], - [AS_HELP_STRING([--with-blas-dir=DIR], [BLAS root directory])], - [BLAS_ROOT=$withval], - [BLAS_ROOT="no"] - ) - AC_ARG_WITH( - [lapack-dir], - [AS_HELP_STRING([--with-lapack-dir=DIR], [LAPACK root directory])], - [LAPACK_ROOT=$withval], - [LAPACK_ROOT="no"] - ) - AC_ARG_WITH( - [blas-lapack-dir], - AS_HELP_STRING([--with-blas-lapack-dir=DIR], [BLAS/LAPACK root directory]), - [BLASLAPACK_ROOT=$withval], - [BLASLAPACK_ROOT="no"] - ) - if (test "x${BLAS_ROOT}" = "xno" || test "x${LAPACK_ROOT}" = "xno") && test "x${BLASLAPACK_ROOT}" = "xno"; then + fi + AC_MSG_RESULT($HAVE_SCALAPACK) + + dnl Blas-lapack directory + AC_ARG_WITH([blas-lapack-dir], + AS_HELP_STRING([--with-blas-lapack-dir = DIR], + [blas-lapack root directory]), + [BLASLAPACK_ROOT=$withval],[BLASLAPACK_ROOT=""]) + + AC_MSG_CHECKING(for Blas and Lapack headers and libraries in $BLASLAPACK_ROOT) + if test -d "$BLASLAPACK_ROOT"; then + + + dnl defaults + HAVE_BLASLAPACK=yes + BLASLAPACKINCL="" + BLASLAPACKLIB=-L"$BLASLAPACK_ROOT -lmkl_lapack -lmkl -lguide" + + AC_DEFINE([_HAVE_BLASLAPACK_],[1],[with Scalapack in ISSM src]) + AC_SUBST([BLASLAPACKLIB]) + AC_SUBST([BLASLAPACKINCL]) + else HAVE_BLASLAPACK=no - else - HAVE_BLASLAPACK=yes - if ! test -d "${BLAS_ROOT}" || ! test -d "${LAPACK_ROOT}"; then - if ! test -d "${BLASLAPACK_ROOT}"; then - AC_MSG_ERROR([Use either --with-blas-dir and --with-lapack-dir *or* --with-blaslapack-dir]); - fi - fi - fi - AC_MSG_RESULT([${HAVE_BLASLAPACK}]) - - dnl BLAS/LAPACK libraries and header files - if test "x${HAVE_BLASLAPACK}" == "xyes"; then - case "${host_os}" in - *darwin*) - BLASLAPACKLIB="-L${BLASLAPACK_ROOT}/lib" - if ls ${BLASLAPACK_ROOT}/lib/libopenblas.* 1> /dev/null 2>&1; then - BLASLAPACKLIB+=" -lopenblas" - elif ls ${BLASLAPACK_ROOT}/lib/libf2clapack.* 1> /dev/null 2>&1; then - BLASLAPACKLIB+=" -lf2clapack -lf2cblas" - elif ls ${BLASLAPACK_ROOT}/lib/libflapack.* 1> /dev/null 2>&1; then - BLASLAPACKLIB+=" -lflapack -lfblas" - else - BLASLAPACKLIB+=" -llapack -lblas" - fi - ;; - *linux*) - BLASLAPACKLIB="-L${BLASLAPACK_ROOT}/lib" - if ls ${BLASLAPACK_ROOT}/lib/libopenblas.* 1> /dev/null 2>&1; then - BLASLAPACKLIB+=" -lopenblas" - elif ls ${BLASLAPACK_ROOT}/lib/libf2clapack.* 1> /dev/null 2>&1; then - BLASLAPACKLIB+=" -lf2clapack -lf2cblas" - elif ls ${BLASLAPACK_ROOT}/lib/libflapack.* 1> /dev/null 2>&1; then - BLASLAPACKLIB+=" -lflapack -lfblas" - else - BLASLAPACKLIB+=" -llapack -lblas" - fi - ;; - *mingw*) - if test -d "${BLASLAPACK_ROOT}"; then - BLASLAPACKLIB="-Wl,-L${BLASLAPACK_ROOT}/lib" - if ls ${BLASLAPACK_ROOT}/lib/libopenblas.* 1> /dev/null 2>&1; then - BLASLAPACKLIB+=" -lopenblas" - elif ls ${BLASLAPACK_ROOT}/lib/libf2clapack.* 1> /dev/null 2>&1; then - BLASLAPACKLIB+=" -lf2clapack -lf2cblas" - elif ls ${BLASLAPACK_ROOT}/lib/libflapack.* 1> /dev/null 2>&1; then - BLASLAPACKLIB="-Wl,-L${BLASLAPACK_ROOT}/lib -Wl,-lflapack -Wl,-lfblas" - else - BLASLAPACKLIB+=" -Wl,-llapack -Wl,-lblas" - fi - else - BLASLAPACKLIB="${LAPACK_ROOT}/lib/liblapack.a ${BLAS_ROOT}/lib/libblas.a" - fi - ;; - esac - AC_DEFINE([_HAVE_BLASLAPACK_], [1], [with BLAS/LAPACK in ISSM src]) - AC_SUBST([BLASLAPACKLIB]) - fi - dnl }}} - dnl Math Kernel Library (MKL){{{ - AC_MSG_CHECKING([for MKL]) - AC_ARG_WITH( - [mkl-libflags], - AS_HELP_STRING([--with-mkl-libflags=LIBS], [MKL libraries to be used]), - [MKL_LIBFLAGS=${withval}], - [MKL_LIBFLAGS="no"] - ) - if test "x${MKL_LIBFLAGS}" == "xno"; then - HAVE_MKL=no - else - HAVE_MKL=yes - MKLLIB="${MKL_LIBFLAGS}" - AC_DEFINE([_HAVE_MKL_], [1], [with MKL in ISSM src]) - AC_SUBST([MKLLIB]) - AC_SUBST([MKLINCL]) - fi - AC_MSG_RESULT([${HAVE_MKL}]) - dnl }}} - dnl PlaLAPACK{{{ - dnl TODO: Handle user supplying path to root directory *or* individual - dnl arguments (like ScaLAPACK) - dnl - AC_MSG_CHECKING(for PlaLAPACK) - AC_ARG_WITH( - [plapack-lib], - AS_HELP_STRING([--with-plapack-lib=], [PlaLAPACK library]), - [PLAPACK_LIB=${withval}], - [PLAPACK_LIB=""] - ) - AC_ARG_WITH( - [plapack-include], - AS_HELP_STRING([--with-plapack-include=], [PlaLAPACK include]), - [PLAPACK_INCLUDE=${withval}], - [PLAPACK_INCLUDE=""] - ) - - if test -n "${PLAPACK_LIB}"; then - if test -n "${PLAPACK_INCLUDE}"; then - HAVE_PLAPACK=yes - PLAPACKINCL="${PLAPACK_INCLUDE}" - PLAPACKLIB="${PLAPACK_LIB}" - AC_DEFINE([_HAVE_PLAPACK_], [1], [with PlaLAPACK in ISSM src]) - AC_SUBST([PLAPACKINCL]) - AC_SUBST([PLAPACKLIB]) - else - HAVE_PLAPACK=no - fi + fi + AC_MSG_RESULT($HAVE_BLASLAPACK) + + + dnl Plapack directory + AC_ARG_WITH([plapack-dir], + AS_HELP_STRING([--with-plapack-dir = DIR], + [plapack root directory]), + [PLAPACK_ROOT=$withval],[PLAPACK_ROOT=""]) + + AC_MSG_CHECKING(for Plapack headers and libraries in $PLAPACK_ROOT) + if test -d "$PLAPACK_ROOT"; then + + + dnl defaults + HAVE_PLAPACK=yes + PLAPACKINCL=-I"$PLAPACK_ROOT/INCLUDE" + PLAPACKLIB=-L"$PLAPACK_ROOT/ -lPLAPACK" + + AC_DEFINE([_HAVE_PLAPACK_],[1],[with Plapack in ISSM src]) + AC_SUBST([PLAPACKINCL]) + AC_SUBST([PLAPACKLIB]) else HAVE_PLAPACK=no fi - AC_MSG_RESULT([${HAVE_PLAPACK}]) - dnl }}} - dnl MPLAPACK{{{ - AC_MSG_CHECKING([for MPLAPACK]) - AC_ARG_WITH( - [mplapack-dir], - AS_HELP_STRING([--with-mplapack-dir=DIR], [MPLAPACK root directory]), - [MPLAPACK_ROOT=${withval}], - [MPLAPACK_ROOT="no"] - ) - if test "x${MPLAPACK_ROOT}" == "xno"; then - HAVE_MPLAPACK=no - else - HAVE_MPLAPACK=yes - if ! test -d "${MPLAPACK_ROOT}"; then - AC_MSG_ERROR([MPLAPACK directory provided (${MPLAPACK_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_MPLAPACK}]) - - dnl MPLAPACK libraries and header files - if test "x${HAVE_MPLAPACK}" == "xyes"; then - MPLAPACKINCL="-I${MPLAPACK_ROOT}/include/mplapack -I${MPLAPACK_ROOT}/include" - MPLAPACKLIB="-L${MPLAPACK_ROOT}/lib -lmpblas__Float128 -lmplapack__Float128 -lgomp -lquadmath" - AC_DEFINE([_HAVE_MPLAPACK_], [1], [with MPLAPACK in ISSM src]) - AC_SUBST([MPLAPACKINCL]) - AC_SUBST([MPLAPACKLIB]) - fi - AM_CONDITIONAL([MPLAPACK], [test "x${HAVE_MPLAPACK}" == "xyes"]) - dnl }}} - dnl MUMPS{{{ - AC_MSG_CHECKING([for MUMPS]) - AC_ARG_WITH( - [mumps-dir], - AS_HELP_STRING([--with-mumps-dir=DIR], [MUMPS root directory]), - [MUMPS_ROOT=${withval}], - [MUMPS_ROOT="no"] - ) - if test "x${MUMPS_ROOT}" == "xno"; then - HAVE_MUMPS=no - else + AC_MSG_RESULT($HAVE_PLAPACK) + + dnl Mumps directory + AC_ARG_WITH([mumps-dir], + AS_HELP_STRING([--with-mumps-dir = DIR], + [mumps root directory]), + [MUMPS_ROOT=$withval],[MUMPS_ROOT=""]) + + AC_MSG_CHECKING(for Mumps headers and libraries in $MUMPS_ROOT) + if test -d "$MUMPS_ROOT"; then + + dnl defaults HAVE_MUMPS=yes - if ! test -d "${MUMPS_ROOT}"; then - AC_MSG_ERROR([MUMPS directory provided (${MUMPS_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_MUMPS}]) - - dnl MUMPS libraries and header files - if test "x${HAVE_MUMPS}" == "xyes"; then - MUMPSINCL="-I${MUMPS_ROOT}/include" - if test "x${MUMPS_ROOT}" == "x${PETSC_ROOT}"; then - if test "${VENDOR}" == "win-msys2"; then - MUMPSLIB="-Wl,-L${MUMPS_ROOT}/lib -Wl,-lcmumps -Wl,-ldmumps -Wl,-lsmumps -Wl,-lzmumps -Wl,-lmumps_common -Wl,-lpord" - else - MUMPSLIB="-L${MUMPS_ROOT}/lib -ldmumps -lcmumps -lmumps_common -lpord -lparmetis -lzmumps -lmetis" - fi - else - MUMPSLIB="-L${MUMPS_ROOT}/lib -ldmumps -lmumps_common -lpord -lparmetis" - fi - AC_DEFINE([_HAVE_MUMPS_], [1], [with MUMPS in ISSM src]) + MUMPSINCL=-I"$MUMPS_ROOT/include" + MUMPSLIB=-L"$MUMPS_ROOT/lib -ldmumps -lcmumps -lpord" + + AC_DEFINE([_HAVE_MUMPS_],[1],[with Mumps in ISSM src]) AC_SUBST([MUMPSINCL]) AC_SUBST([MUMPSLIB]) - fi - AM_CONDITIONAL([MUMPS], [test "x${HAVE_MUMPS}" == "xyes"]) - dnl }}} - dnl MUMPS2{{{ - if test "x${HAVE_MUMPS}" != "xyes"; then - AC_MSG_CHECKING(for MUMPS2 (standalone)) - AC_ARG_WITH( - [mumps2-include], - AS_HELP_STRING([--with-mumps2-include=DIR], [MUMPS2 include directory, necessary for parallel build]), - [MUMPS_INCLUDE=${withval}], - [MUMPS_INCLUDE=""] - ) - AC_ARG_WITH( - [mumps2-libflags], - AS_HELP_STRING([--with-mumps2-libflags=LIBS], [MUMPS2 libraries to be used, necessary for parallel build]), - [MUMPS_LIBFLAGS=${withval}], - [MUMPS_LIBFLAGS=""] - ) - if test -z "${MUMPS_INCLUDE}"; then - HAVE_MUMPS=no - else - HAVE_MUMPS=yes - - if test -z "${MUMPS_LIBDIR}"; then - MUMPSINCL="-I${MUMPS_INCLUDE}" - MUMPSLIB="${MUMPS_LIBFLAGS}" - else - MUMPSINCL="-I${MUMPS_INCLUDE}" - MUMPSLIB="-L${MUMPS_LIBDIR} ${MUMPS_LIBFLAGS}" - fi - AC_DEFINE([_HAVE_MUMPS_], [1], [with MUMPS]) - AC_SUBST([MUMPSINCL]) - AC_SUBST([MUMPSLIB]) - fi - AM_CONDITIONAL([MUMPS], [test "x${HAVE_MUMPS}" == "xyes"]) - AC_MSG_RESULT([${HAVE_MUMPS}]) - fi - dnl }}} - dnl BLACS{{{ - AC_MSG_CHECKING([for BLACS]) - AC_ARG_WITH( - [blacs-dir], - AS_HELP_STRING([--with-blacs-dir=DIR], [BLACS root directory]), - [BLACS_ROOT=${withval}], - [BLACS_ROOT="no"] - ) - if test "x${BLACS_ROOT}" == "xno"; then - HAVE_BLACS=no - else + else + HAVE_MUMPS=no + fi + AC_MSG_RESULT($HAVE_MUMPS) + + dnl Blacs directory + AC_ARG_WITH([blacs-dir], + AS_HELP_STRING([--with-blacs-dir = DIR], + [blacs root directory]), + [BLACS_ROOT=$withval],[BLACS_ROOT=""]) + + AC_MSG_CHECKING(for Blacs headers and libraries in $BLACS_ROOT) + if test -d "$BLACS_ROOT"; then + + dnl defaults HAVE_BLACS=yes - if ! test -d "${BLACS_ROOT}"; then - AC_MSG_ERROR([BLACS directory provided (${BLACS_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_BLACS}]) - - dnl BLACS libraries and header files - if test "x${HAVE_BLACS}" == "xyes"; then BLACSINCL="" - BLACSLIB="-L${BLACS_ROOT} -lblacs" - AC_DEFINE([_HAVE_BLACS_], [1], [with BLACS in ISSM src]) + BLACSLIB=-L"$BLACS_ROOT/ -lblacs" + + AC_DEFINE([_HAVE_BLACS_],[1],[with Blacs in ISSM src]) AC_SUBST([BLACSINCL]) AC_SUBST([BLACSLIB]) - fi - dnl }}} - dnl HYPRE{{{ - AC_MSG_CHECKING([for HYPRE]) - AC_ARG_WITH( - [hypre-dir], - AS_HELP_STRING([--with-hypre-dir=DIR], [HYPRE root directory]), - [HYPRE_ROOT=${withval}], - [HYPRE_ROOT="no"] - ) - if test "x${HYPRE_ROOT}" == "xno"; then - HAVE_HYPRE=no - else - HAVE_HYPRE=yes - if ! test -d "${HYPRE_ROOT}"; then - AC_MSG_ERROR([HYPRE directory provided (${HYPRE_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_HYPRE}]) - - dnl HYPRE libraries and header files - if test "x${HAVE_HYPRE}" == "xyes"; then - HYPREINCL="" - HYPRELIB="-L${HYPRE_ROOT}/lib -lHYPRE" - AC_DEFINE([_HAVE_HYPRE_], [1], [with HYPRE in ISSM src]) - AC_SUBST([HYPREINCL]) - AC_SUBST([HYPRELIB]) - fi - dnl }}} - dnl Prometheus{{{ - AC_MSG_CHECKING([for Prometheus]) - AC_ARG_WITH( - [prometheus-dir], - AS_HELP_STRING([--with-prometheus-dir=DIR], [Prometheus root directory]), - [PROMETHEUS_ROOT=${withval}], - [PROMETHEUS_ROOT="no"] - ) - if test "x${PROMETHEUS_ROOT}" == "xno"; then - HAVE_PROMETHEUS=no - else - HAVE_PROMETHEUS=yes - if ! test -d "${PROMETHEUS_ROOT}"; then - AC_MSG_ERROR([Prometheus directory provided (${PROMETHEUS_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_PROMETHEUS}]) - - dnl Prometheus libraries and header files - if test "x${HAVE_PROMETHEUS}" == "xyes"; then - PROMETHEUSINCL="-I${PROMETHEUS_ROOT}/include" - PROMETHEUSLIB="-L${PROMETHEUS_ROOT}/lib -lpromfei -lprometheus -lparmetis" - AC_DEFINE([_HAVE_PROMETHEUS_], [1], [with Prometheus in ISSM src]) - AC_SUBST([PROMETHEUSINCL]) - AC_SUBST([PROMETHEUSLIB]) - fi - dnl }}} - dnl SEMIC{{{ - AC_MSG_CHECKING([for SEMIC]) - AC_ARG_WITH( - [semic-dir], - AS_HELP_STRING([--with-semic-dir=DIR], [SEMIC root directory]), - [SEMIC_ROOT=${withval}], - [SEMIC_ROOT="no"] - ) - if test "x${SEMIC_ROOT}" == "xno"; then - HAVE_SEMIC=no - else - HAVE_SEMIC=yes - if ! test -d "${SEMIC_ROOT}"; then - AC_MSG_ERROR([SEMIC directory provided (${SEMIC_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_SEMIC}]) - - dnl SEMIC libraries and header files - if test "x${HAVE_SEMIC}" == "xyes"; then - SEMICINCL="-I${SEMIC_ROOT}" - if test "${IS_MSYS2}" == "yes"; then - SEMICLIB="-Wl,-L${SEMIC_ROOT}/lib -Wl,-lsurface_physics -Wl,-lutils" - else - SEMICLIB="-L${SEMIC_ROOT}/lib -lsurface_physics -lutils" - fi - AC_DEFINE([_HAVE_SEMIC_], [1], [with SEMIC in ISSM src]) - AC_SUBST([SEMICLIB]) - AC_SUBST([SEMICINCL]) - fi - AM_CONDITIONAL([SEMIC], [test "x${HAVE_SEMIC}" == "xyes"]) - dnl }}} - dnl SPAI{{{ - AC_MSG_CHECKING([for SPAI]) - AC_ARG_WITH( - [spai-dir], - AS_HELP_STRING([--with-spai-dir=DIR], [SPAI root directory]), - [SPAI_ROOT=${withval}], - [SPAI_ROOT="no"] - ) - if test "x${SPAI_ROOT}" == "xno"; then - HAVE_SPAI=no - else - HAVE_SPAI=yes - if ! test -d "${SPAI_ROOT}"; then - AC_MSG_ERROR([SPAI directory provided (${SPAI_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_SPAI}]) - - dnl SPAI libraries and header files - if test "x${HAVE_SPAI}" == "xyes"; then - SPAIINCL="-I${SPAI_ROOT}/include" - SPAILIB="-L${SPAI_ROOT}/lib -lspai" - AC_DEFINE([_HAVE_SPAI_], [1], [with SPAI in ISSM src]) - AC_SUBST([SPAIINCL]) - AC_SUBST([SPAILIB]) - fi - dnl }}} - dnl SuperLU{{{ - AC_MSG_CHECKING([for SuperLU]) - AC_ARG_WITH( - [superlu-dir], - AS_HELP_STRING([--with-superlu-dir=DIR], [SuperLU root directory]), - [SUPERLU_ROOT=${withval}], - [SUPERLU_ROOT="no"] - ) - if test "x${SUPERLU_ROOT}" == "xno"; then - HAVE_SUPERLU=no - else - HAVE_SUPERLU=yes - if ! test -d "${SUPERLU_ROOT}"; then - AC_MSG_ERROR([SuperLU directory provided (${SUPERLU_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_SUPERLU}]) - - dnl SuperLU libraries and header files - if test "x${HAVE_SUPERLU}" == "xyes"; then - SUPERLUINCL="-I${SUPERLU_ROOT}/include" - SUPERLULIB="-L${SUPERLU_ROOT}/lib -lsuperlu_dist" - AC_DEFINE([_HAVE_SUPERLU_], [1], [with SuperLU in ISSM src]) - AC_SUBST([SUPERLUINCL]) - AC_SUBST([SUPERLULIB]) - fi - dnl }}} - dnl SPOOLES{{{ - AC_MSG_CHECKING([for SPOOLES]) - AC_ARG_WITH( - [spooles-dir], - AS_HELP_STRING([--with-spooles-dir=DIR], [SPOOLES root directory]), - [SPOOLES_ROOT=${withval}], - [SPOOLES_ROOT="no"] - ) - if test "x${SPOOLES_ROOT}" == "xno"; then - HAVE_SPOOLES=no - else - HAVE_SPOOLES=yes - if ! test -d "${SPOOLES_ROOT}"; then - AC_MSG_ERROR([SPOOLES directory provided (${SPOOLES_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_SPOOLES}]) - - dnl SPOOLES libraries and header files - if test "x${HAVE_SPOOLES}" == "xyes"; then - SPOOLESINCL="-I${SPOOLES_ROOT}/include" - SPOOLESLIB="-L${SPOOLES_ROOT}/lib -lspooles" - AC_DEFINE([_HAVE_SPOOLES_], [1], [with SPOOLES in ISSM src]) - AC_SUBST([SPOOLESINCL]) - AC_SUBST([SPOOLESLIB]) - fi - dnl }}} - dnl PaStiX{{{ - AC_MSG_CHECKING([for PaStiX]) - AC_ARG_WITH( - [pastix-dir], - AS_HELP_STRING([--with-pastix-dir=DIR], [PaStiX root directory]), - [PASTIX_ROOT=${withval}], - [PASTIX_ROOT="no"] - ) - if test "x${PASTIX_ROOT}" == "xno"; then - HAVE_PASTIX=no - else - HAVE_PASTIX=yes - if ! test -d "${PASTIX_ROOT}"; then - AC_MSG_ERROR([PaStiX directory provided (${PASTIX_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_PASTIX}]) - - dnl PaStiX libraries and header files - if test "x${HAVE_PASTIX}" == "xyes"; then - PASTIXINCL="-I${PASTIX_ROOT}/include" - PASTIXLIB="-L${PASTIX_ROOT}/lib -lpastix_XXbit_mpi_smp_nobubble_int32_simple_real_scotch_i686_pc_linux -lptscotch -lptscotcherr -lpastix" - AC_DEFINE([_HAVE_PASTIX_], [1], [with PaStiX in ISSM src]) - AC_SUBST([PASTIXINCL]) - AC_SUBST([PASTIXLIB]) - fi - dnl }}} - dnl }}} - dnl ml{{{ - AC_MSG_CHECKING([for ml]) - AC_ARG_WITH( - [ml-dir], - AS_HELP_STRING([--with-ml-dir=DIR],[ml root directory]), - [ML_ROOT=$withval], - [ML_ROOT="no"] - ) - if test "x${ML_ROOT}" == "xno"; then - HAVE_ML=no - else - HAVE_ML=yes - if ! test -d "${ML_ROOT}"; then - AC_MSG_ERROR([ml directory provided (${ML_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_ML}]) - - dnl ml libraries and header files - if test "x${HAVE_ML}" == "xyes"; then - MLINCL=-I"${ML_ROOT}/include" - MLLIB=-L"${ML_ROOT}/lib -lml" - AC_DEFINE([_HAVE_ML_], [1], [with ml in ISSM src]) - AC_SUBST([MLINCL]) - AC_SUBST([MLLIB]) - fi - dnl }}} - dnl UMFPACK{{{ - AC_MSG_CHECKING([for UMFPACK]) - AC_ARG_WITH( - [umfpack-dir], - AS_HELP_STRING([--with-umfpack-dir=DIR], [UMFPACK root directory]), - [UMFPACK_ROOT=${withval}], - [UMFPACK_ROOT="no"] - ) - if test "x${UMFPACK_ROOT}" == "xno"; then - HAVE_UMFPACK=no - else - HAVE_UMFPACK=yes - if ! test -d "${UMFPACK_ROOT}"; then - AC_MSG_ERROR([UMFPACK directory provided (${UMFPACK_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_UMFPACK}]) - - dnl UMFPACK libraries and header files - if test "x${HAVE_UMFPACK}" == "xyes"; then - UMFPACKINCL="" - UMFPACKLIB="-L${UMFPACK_ROOT}/lib -lumfpack -lumfpack.5.5.1" - AC_DEFINE([_HAVE_UMFPACK_], [1], [with UMFPACK in ISSM src]) - AC_SUBST([UMFPACKINCL]) - AC_SUBST([UMFPACKLIB]) - fi - dnl }}} - dnl libm (GNU math library){{{ - AC_MSG_CHECKING(for libm) - AC_ARG_WITH( - [math-lib], - AS_HELP_STRING([--with-math-lib=LIB], [libm (GNU math library) to use]), - [MATH_LIB=${withval}], - [MATH_LIB=""] - ) - if test -n "${MATH_LIB}"; then - HAVE_MATH=yes - MATHLIB="${MATH_LIB}" - AC_DEFINE([_HAVE_MATH_], [1], [with libm (GNU math library) in ISSM src]) - AC_SUBST([MATHLIB]) - fi - AC_MSG_RESULT([done]) - dnl }}} - dnl MATH77{{{ - AC_MSG_CHECKING([for MATH77]) - AC_ARG_WITH( - [math77-dir], - AS_HELP_STRING([--with-math77-dir=DIR], [MATH77 root directory]), - [MATH77_ROOT=${withval}], - [MATH77_ROOT="no"] - ) - if test "x${MATH77_ROOT}" == "xno"; then - HAVE_MATH77=no - else - HAVE_MATH77=yes - if ! test -d "${MATH77_ROOT}"; then - AC_MSG_ERROR([MATH77 directory provided (${MATH77_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_MATH77}]) - - dnl MATH77 libraries and header files - if test "x${HAVE_MATH77}" == "xyes"; then - MATH77LIB="-L${MATH77_ROOT} -lmath77" - AC_DEFINE([_HAVE_MATH77_], [1], [with MATH77 in ISSM src]) - AC_SUBST([MATH77LIB]) - fi - dnl }}} - dnl Fortran{{{ - AC_MSG_CHECKING(for Fortran compilation) - AC_ARG_WITH( - [fortran], - AS_HELP_STRING([--with-fortran=YES], [do we compile Fortran code (default: yes)]), - [FORTRAN=${withval}], - [FORTRAN=yes] - ) - if test "x${FORTRAN}" == "xyes"; then - HAVE_FORTRAN=yes - AC_DEFINE([_HAVE_FORTRAN_], [1], [with Fortran capability]) - else - HAVE_FORTRAN=no - fi - AM_CONDITIONAL([FORTRAN], [test "x${FORTRAN}" == "xyes"]) - AC_MSG_RESULT([${FORTRAN}]) - - IS_FORTRANDIR_A_DIR=no - if test "x${FORTRAN}" == "xyes"; then - dnl Fortran library - AC_MSG_CHECKING([for Fortran library]) - AC_ARG_WITH( - [fortran-lib], - AS_HELP_STRING([--with-fortran-lib=LIB], [Fortran library to use (and, if needed, libraries on which it depends)]), - [FORTRAN_LIB=${withval}], - [FORTRAN_LIB=""] - ) - if test -n "${FORTRAN_LIB}"; then - FORTRAN_DIR=$(echo ${FORTRAN_LIB} | sed -e "s/-Wl,//g" | sed -e "s/-L//g" | awk '{print $[1]}') - if test -d "${FORTRAN_DIR}" || test -f "${FORTRAN_DIR}"; then - FORTRANDIR="${FORTRAN_DIR}" - if test -n "${FORTRAN_DIR}"; then - IS_FORTRANDIR_A_DIR=yes - fi - FORTRANLIB="${FORTRAN_LIB}" - AC_DEFINE([_HAVE_FORTRAN_], [1], [with Fortran library in ISSM src]) - AC_SUBST([FORTRANDIR]) - AC_SUBST([FORTRANLIB]) - else - if test "x${HAVE_MPI}" == "xyes"; then - MPI_REC_FORTRAN_LIB=$(mpif77 -print-file-name="libgfortran.a") - if test -f "${FORTRANLIB}"; then - AC_MSG_ERROR([Fortran library provided (${FORTRAN_LIB}) does not exist! MPI suggests the following library: ${MPI_REC_FORTRAN_LIB}]); - fi - fi - AC_MSG_ERROR([Fortran library provided (${FORTRAN_LIB}) does not exist!]); - fi - fi - AC_MSG_RESULT([done]) - fi - AM_CONDITIONAL([HAVE_FORTRANDIR], [test "x${IS_FORTRANDIR_A_DIR}" == "xyes"]) - dnl }}} - dnl Xlib (graphics library){{{ - AC_MSG_CHECKING([for Xlib (graphics library)]) - AC_ARG_WITH( - [graphics-lib], - AS_HELP_STRING([--with-graphics-lib=options], [Xlib (graphics library) to use]), - [GRAPHICS_LIB=${withval}], - [GRAPHICS_LIB=""] - ) - if test -n "${GRAPHICS_LIB}"; then - GRAPHICS_DIR=$(echo ${GRAPHICS_LIB} | sed -e "s/-L//g" | awk '{print $[1]}') - if test -d "${GRAPHICS_DIR}" || test -f "${GRAPHICS_DIR}"; then - HAVE_GRAPHICS=yes - GRAPHICSLIB="${GRAPHICS_LIB}" - AC_DEFINE([_HAVE_GRAPHICS_], [1], [with Xlib (graphics library) in ISSM src]) - AC_SUBST([GRAPHICSLIB]) - else - if test -f "${PETSC_ROOT}/conf/petscvariables"; then - PETSC_REC_GRAPHICS_LIB=$(cat ${PETSC_ROOT}/conf/petscvariables | grep X_LIB) - AC_MSG_ERROR([Xlib (graphics library) provided (${GRAPHICS_LIB}) does not exist! PETSc suggests the following library: ${PETSC_REC_GRAPHICS_LIB}]); - fi - AC_MSG_ERROR([Xlib (graphics library) provided (${GRAPHICS_LIB}) does not exist!]); - fi - fi - AC_MSG_RESULT([done]) - dnl }}} - dnl MeteoIO{{{ - AC_MSG_CHECKING([for MeteoIO]) - AC_ARG_WITH( - [meteoio-dir], - AS_HELP_STRING([--with-meteoio-dir=DIR], [use MeteoIO in conjunction with SNOWPACK model]), - [METEOIO_ROOT=${withval}], - [METEOIO_ROOT="no"] - ) - if test "x${METEOIO_ROOT}" == "xno"; then - HAVE_METEOIO=no - else - HAVE_METEOIO=yes - if ! test -d "${METEOIO_ROOT}"; then - AC_MSG_ERROR([MeteoIO directory provided (${METEOIO_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_METEOIO}]) - - dnl MeteoIO libraries and header files - if test "x${HAVE_METEOIO}" == "xyes"; then - METEOIOINCL="-I${METEOIO_ROOT}/include" - METEOIOLIB="-dy -L${METEOIO_ROOT}/lib -lmeteoio" - - AC_DEFINE([_HAVE_METEOIO_], [1], [with MeteoIO]) - AC_SUBST([METEOIOINCL]) - AC_SUBST([METEOIOLIB]) - fi - AM_CONDITIONAL([METEOIO], [test "x${HAVE_METEOIO}" == "xyes"]) - dnl }}} - dnl SNOWPACK{{{ - AC_MSG_CHECKING([for SNOWPACK]) - AC_ARG_WITH( - [snowpack-dir], - AS_HELP_STRING([--with-snowpack-dir=DIR], [use SNOWPACK for surface mass balance model]), - [SNOWPACK_ROOT=${withval}], - [SNOWPACK_ROOT="no"] - ) - if test "x${SNOWPACK_ROOT}" == "xno"; then - HAVE_SNOWPACK=no - else - HAVE_SNOWPACK=yes - if ! test -d "${SNOWPACK_ROOT}"; then - AC_MSG_ERROR([SNOWPACK directory provided (${SNOWPACK_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_SNOWPACK}]) - - dnl SNOWPACK libraries and header files - if test "x${HAVE_SNOWPACK}" == "xyes"; then - SNOWPACKINCL="-I${SNOWPACK_ROOT}/include" - SNOWPACKLIB="-dy -L${SNOWPACK_ROOT}/lib -lsnowpack" - AC_DEFINE([_HAVE_SNOWPACK_], [1], [with SNOWPACK for surface mass balance model]) - AC_SUBST([SNOWPACKINCL]) - AC_SUBST([SNOWPACKLIB]) - fi - AM_CONDITIONAL([SNOWPACK], [test "x${HAVE_SNOWPACK}" == "xyes"]) - dnl }}} - dnl NeoPZ{{{ - AC_MSG_CHECKING([for NeoPZ]) - AC_ARG_WITH( - [neopz-dir], - AS_HELP_STRING([--with-neopz-dir=DIR], [NeoPZ root directory]), - [NEOPZ_ROOT=${withval}], - [NEOPZ_ROOT="no"] - ) - if test "x${NEOPZ_ROOT}" == "xno"; then - HAVE_NEOPZ=no - else - HAVE_NEOPZ=yes - if ! test -d "${NEOPZ_ROOT}"; then - AC_MSG_ERROR([NeoPZ directory provided (${NEOPZ_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_NEOPZ}]) - - dnl NeoPZ libraries and header files - if test "x${HAVE_NEOPZ}" == "xyes"; then - NEOPZLIB="${NEOPZ_ROOT}/lib/libpz.a" - NEOPZINCL="-I${NEOPZ_ROOT}/include" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Analysis" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Common" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/External" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Frontal" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Geom" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Integral" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/LinearSolvers" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Material" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Matrix" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Mesh" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Multigrid" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/PerfUtil" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Post" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Pre" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Refine" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Save" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Shape" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/SpecialMaps" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/StrMatrix" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/SubStruct" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Topology" - NEOPZINCL+=" -I${NEOPZ_ROOT}/include/Util" - CXXFLAGS+=" -std=c++11" - AC_DEFINE([_HAVE_NEOPZ_], [1], [with NeoPZ in ISSM src]) - AC_SUBST([NEOPZINCL]) - AC_SUBST([NEOPZLIB]) - fi - AM_CONDITIONAL([NEOPZ], [test "x${HAVE_NEOPZ}" == "xyes"]) - dnl }}} - dnl Gmsh{{{ - AC_MSG_CHECKING([for Gmsh]) - AC_ARG_WITH( - [gmsh-dir], - AS_HELP_STRING([--with-gmsh-dir=DIR], [Gmsh root directory]), - [GMSH_ROOT=${withval}], - [GMSH_ROOT="no"] - ) - if test "x${GMSH_ROOT}" == "xno"; then - HAVE_GMSH=no - else - HAVE_GMSH=yes - if ! test -d "${GMSH_ROOT}"; then - AC_MSG_ERROR([Gmsh directory provided (${GMSH_ROOT}) does not exist!]); - fi - fi - AC_MSG_RESULT([${HAVE_GMSH}]) - AM_CONDITIONAL([GMSH], [test "x${HAVE_GMSH}" == "xyes"]) - - if test "x${HAVE_GMSH}" == "xyes"; then - AC_DEFINE([_HAVE_GMSH_], [1], [with Gmsh in ISSM src]) - - AC_MSG_CHECKING(for Gmsh version) - GMSH_VERSION_MAJOR=`${GMSH_ROOT}/bin/gmsh -info | grep "Version" | sed -e "s/Version@<:@@<:@:blank:@:>@@:>@*:@<:@@<:@:blank:@:>@@:>@//" | cut -d "." -f 1` - AC_MSG_RESULT([${GMSH_VERSION_MAJOR}]) - AC_DEFINE_UNQUOTED([_GMSH_VERSION_MAJOR_], ${GMSH_VERSION_MAJOR}, [Gmsh major version]) - fi - dnl }}} - dnl Capabilities - dnl with-bamg{{{ - AC_MSG_CHECKING([for BAMG capability compilation]) - AC_ARG_WITH( - [bamg], - AS_HELP_STRING([--with-bamg=YES], [compile with BAMG capabilities (default: yes)]), - [BAMG=${withval}], - [BAMG=yes] - ) - HAVE_BAMG=no - if test "x${BAMG}" == "xyes"; then - HAVE_BAMG=yes - AC_DEFINE([_HAVE_BAMG_], [1], [with BAMG meshing capability]) - fi - AM_CONDITIONAL([BAMG], [test "x${HAVE_BAMG}" == "xyes"]) - AC_MSG_RESULT([${HAVE_BAMG}]) - dnl }}} - dnl with-ocean{{{ - AC_MSG_CHECKING(for ice/ocean coupling capability compilation) - AC_ARG_WITH( - [ocean], - AS_HELP_STRING([--with-ocean = YES], [compile with ice/ocean coupling capability (default: no)]), - [OCEAN=${withval}], - [OCEAN=no] - ) - HAVE_OCEAN=no - if test "x${OCEAN}" == "xyes"; then - HAVE_OCEAN=yes - AC_DEFINE([_HAVE_OCEAN_], [1], [with ice/ocean coupling capability]) - fi - AM_CONDITIONAL([OCEAN], [test "x${HAVE_OCEAN}" == "xyes"]) - AC_MSG_RESULT([${HAVE_OCEAN}]) - dnl }}} - dnl with-kml{{{ - AC_MSG_CHECKING(for kml capability compilation) - AC_ARG_WITH( - [kml], - AS_HELP_STRING([--with-kml=YES], [compile with kml capabilities (default: no)]), - [KML=${withval}], - [KML=no] - ) - HAVE_KML=no - if test "x${KML}" == "xyes"; then - HAVE_KML=yes - AC_DEFINE([_HAVE_KML_], [1], [with kml capability]) - fi - AM_CONDITIONAL([KML], [test "x${HAVE_KML}" == "xyes"]) - AC_MSG_RESULT([${HAVE_KML}]) - dnl }}} - dnl with-kriging{{{ - AC_MSG_CHECKING(for kriging capability compilation) - AC_ARG_WITH( - [kriging], - AS_HELP_STRING([--with-kriging=YES], [compile with kriging capabilities (default: yes)]), - [KRIGING=${withval}], - [KRIGING=yes] - ) - HAVE_KRIGING=no - if test "x${KRIGING}" == "xyes"; then - HAVE_KRIGING=yes - AC_DEFINE([_HAVE_KRIGING_], [1], [with kriging capability]) - fi - AM_CONDITIONAL([KRIGING], [test "x${HAVE_KRIGING}" == "xyes"]) - AC_MSG_RESULT([${HAVE_KRIGING}]) - dnl }}} - - dnl Analyses - AX_ANALYSES_SELECTION - - dnl Platform specifics - dnl with-ios{{{ - AC_MSG_CHECKING(for iOS compilation) - AC_ARG_WITH( - [ios], - AS_HELP_STRING([--with-ios=YES], [compile with iOS capabilities (default: no)]), - [IOS=${withval}], - [IOS=no] - ) - HAVE_IOS=no - if test "x${IOS}" == "xyes"; then - HAVE_IOS=yes - AC_DEFINE([_HAVE_IOS_], [1], [with iOS capability]) - fi - AM_CONDITIONAL([IOS], [test "x${HAVE_IOS}" != "xno"]) - AC_MSG_RESULT([${HAVE_IOS}]) - dnl }}} - dnl with-android{{{ - AC_MSG_CHECKING([for Android capability compilation]) - AC_ARG_WITH( - [android], - AS_HELP_STRING([--with-android=EXE], [compile with Android capabilities (default: "no"; alternatives: "exe", "jni")]), - [ANDROID=${withval}], - [ANDROID=no] - ) - if test "x${ANDROID}" == "xjni"; then - HAVE_ANDROID=jni - AC_DEFINE([_HAVE_ANDROID_], [1], [with Android capability]) - AC_DEFINE([_HAVE_ANDROID_JNI_], [1], [with Android Java Native Interface (JNI)]) - elif test "x${ANDROID}" == "xexe"; then - HAVE_ANDROID=exe - AC_DEFINE([_HAVE_ANDROID_], [1], [with Android capability]) - elif test "x${ANDROID}" == "xno"; then - HAVE_ANDROID=no - else - AC_MSG_ERROR([--with-android should be either "no", "exe" or "jni"]) - fi - AM_CONDITIONAL([ANDROID], [test "x${HAVE_ANDROID}" != "xno"]) - AM_CONDITIONAL([ANDROIDJNI], [test "x${HAVE_ANDROID}" == "xjni"]) - AM_CONDITIONAL([ANDROIDEXE], [test "x${HAVE_ANDROID}" == "xexe"]) - AC_MSG_RESULT([${HAVE_ANDROID}]) - dnl }}} - dnl with-android-ndk{{{ - AC_MSG_CHECKING([with Android Native Development Kit (NDK)]) - AC_ARG_WITH( - [android-ndk], - AS_HELP_STRING([--with-android-ndk=DIR], [Android NDK root directory]), - [ANDROID_NDK_ROOT=${withval}], - [ANDROID_NDK_ROOT=""] - ) - if test -d "${ANDROID_NDK_ROOT}"; then - HAVE_ANDROID_NDK=yes - ANDROID_NDKINCL="-I${ANDROID_NDK_ROOT}/arm-linux-android-install/sysroot/usr/include" - AC_DEFINE([_HAVE_ANDROID_NDK_], [1], [with Android NDK in ISSM src]) - AC_SUBST([ANDROID_NDKINCL]) - else - HAVE_ANDROID_NDK=no - fi - AC_MSG_RESULT([${HAVE_ANDROID_NDK}]) - dnl }}} - - dnl other options - dnl optimization{{{ - dnl -- bypass standard optimization -g -O2 -fPIC? - AC_MSG_CHECKING(for C++ optimization flags) - AC_ARG_WITH( - [cxxoptflags], - AS_HELP_STRING([--with-cxxoptflags=CXXOPTFLAGS], [C++ optimization flags (i.e. --with-cxxoptflags="-march=opteron -O3 -std=c++11"]), - [CXXOPTFLAGS=${withval}], - [CXXOPTFLAGS="-g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_"] - ) - AC_SUBST([CXXOPTFLAGS]) - AC_MSG_RESULT([${CXXOPTFLAGS}]) - dnl }}} - dnl multithreading{{{ - AC_MSG_CHECKING(for number of threads) - AC_ARG_WITH( - [numthreads], - AS_HELP_STRING([--with-numthreads=NUMTHREADS_VALUE], [number of threads (default: 1)]), - [NUMTHREADS_VALUE=${withval}], - [NUMTHREADS_VALUE=1] - ) - dnl Check that supplied value is an integer - if test "${NUMTHREADS_VALUE}" != "${NUMTHREADS_VALUE}"; then - AC_MSG_ERROR([Number of threads provided (${NUMTHREADS_VALUE}) is not an integer!]); - elif test "${NUMTHREADS_VALUE}" == "0"; then - AC_MSG_ERROR([Number of threads must be at least 1!]); - fi - MULTITHREADING=no - MULTITHREADINLIB="" - if test "x${NUMTHREADS_VALUE}" != "x1"; then - MULTITHREADINGLIB="-lpthread -lrt" - case "${host_os}" in - *darwin*) - MULTITHREADINGLIB="-lpthread" - ;; - *linux*) - MULTITHREADINGLIB="-lpthread -lrt" - ;; - *mingw*) - MULTITHREADINGLIB="" - ;; - esac - AC_DEFINE([_MULTITHREADING_], [1], [with multithreading enabled]) - fi - AC_DEFINE_UNQUOTED([_NUMTHREADS_], ${NUMTHREADS_VALUE}, [number of threads]) - AC_SUBST([MULTITHREADINGLIB]) - AC_MSG_RESULT([${NUMTHREADS_VALUE}]) - dnl }}} - dnl 64-bit indices{{{ - AC_MSG_CHECKING([for 64-bit indices]) - AC_ARG_WITH( - [64bit-indices], - AS_HELP_STRING([--with-64bit-indices=bool], [use 64-bit indices (default: 0)]), - [USE_64BIT_INDICES=${withval}], - [USE_64BIT_INDICES=0] - ) - if test "x${USE_64BIT_INDICES}" == "x1"; then - AC_DEFINE([ISSM_USE_64BIT_INDICES], [1], [with 64-bit indices]) - else - AC_DEFINE([ISSM_USE_64BIT_INDICES], [0], [with 64-bit indices]) - fi - AC_MSG_RESULT([${USE_64BIT_INDICES}]) - dnl }}} - - dnl Checks {{{ - AC_MSG_CHECKING(consistency between all external packages) - - dnl Check that if PETSc is requested, MPI is specified - if test "x${HAVE_PETSC}" == "xyes"; then - if test "x${HAVE_MPI}" == "xno"; then - AC_MSG_ERROR([PETSc requires MPI!]); - fi - fi - - dnl Check that we have MATLAB and/or Python support if we compile the modules - if test "x${MODULES_VALUE}" == "xyes" && test "${HAVE_MATLAB}" == "xno" && test "${HAVE_PYTHON}" == "xno"; then - AC_MSG_ERROR([need at least MATLAB and/or Python support to compile modules! (or use --with-modules=no)]); - fi - - dnl Check that Fortran is provided if Gia is on - if test "x${HAVE_GIA}" == "xyes" && test "${HAVE_FORTRAN}" == "xno"; then - AC_MSG_ERROR([need Fortran compiler to compile Gia! (or use --without-Gia)]); - fi - - dnl Check that Fortran is provided if Love is on - if test "x${HAVE_LOVE}" == "xyes" && test "x${HAVE_FORTRAN}" == "xno"; then - AC_MSG_ERROR([need Fortran compiler to compile Love! (or use --without-Love)]); - fi - - dnl Check that if we have MPI, we have METIS - if test "x${HAVE_METIS}" == "xyes" && test "x${HAVE_MPI}" == "xno"; then - AC_MSG_ERROR([need MPI if using the METIS partitioner!]); - fi - - dnl Check that if we run ADOL-C, we don't compile kriging.exe - if test "x${HAVE_ADOLC}" == "xyes" && test "${HAVE_KRIGING}" == "xyes"; then - AC_MSG_ERROR([cannot compile kriging.exe under ADOL-C conditions!]); - fi - - dnl Check that if we run ADOL-C, we don't use PETSc for now - if test "x${HAVE_ADOLC}" == "xyes" && test "x${HAVE_PETSC}" == "xyes"; then - AC_MSG_ERROR([cannot compile ISSM with both PETSc and ADOL-C!]); - fi - if test "x${HAVE_ADOLC}" == "xyes" && test "x${HAVE_CODIPACK}" == "xyes"; then - AC_MSG_ERROR([cannot compile ISSM with both ADOL-C and CoDiPack!]); - fi - if test "x${HAVE_ADJOINTMPI}" == "xyes" && test "x${HAVE_MEDIPACK}" == "xyes"; then - AC_MSG_ERROR([cannot compile ISSM with both MeDiPack and AdjointMPI!]); - fi - dnl Check that if we run MeteoIO, we have SNOWPACK also - if test "x${HAVE_METEOIO}" == "xyes" && test "x${HAVE_SNOWPACK}" == "xno"; then - AC_MSG_ERROR([cannot compile MeteoIO package without SNOWPACK!]); - fi - dnl Check that if we run SNOWPACK, we have MeteoIO also - if test "${HAVE_METEOIO}" == "xno" && test "${HAVE_SNOWPACK}" == "xyes"; then - AC_MSG_ERROR([cannot compile SNOWPACK package without MeteoIO!]); - fi - - AC_MSG_RESULT([done]) - dnl }}} + else + HAVE_BLACS=no + fi + AC_MSG_RESULT($HAVE_BLACS) + + + + ]) Index: /issm/trunk/m4/matlab.m4 =================================================================== --- /issm/trunk/m4/matlab.m4 (revision 1) +++ /issm/trunk/m4/matlab.m4 (revision 1) @@ -0,0 +1,1119 @@ +##### http://autoconf-archive.cryp.to/ax_cflags_warn_all.html +# +# SYNOPSIS +# +# AX_CFLAGS_WARN_ALL [(shellvar [,default, [A/NA]])] +# +# DESCRIPTION +# +# Try to find a compiler option that enables most reasonable +# warnings. This macro is directly derived from VL_PROG_CC_WARNINGS +# which is split up into two AX_CFLAGS_WARN_ALL and +# AX_CFLAGS_WARN_ALL_ANSI +# +# For the GNU CC compiler it will be -Wall (and -ansi -pedantic) The +# result is added to the shellvar being CFLAGS by default. +# +# Currently this macro knows about GCC, Solaris C compiler, Digital +# Unix C compiler, C for AIX Compiler, HP-UX C compiler, IRIX C +# compiler, NEC SX-5 (Super-UX 10) C compiler, and Cray J90 (Unicos +# 10.0.0.8) C compiler. +# +# - $1 shell-variable-to-add-to : CFLAGS +# - $2 add-value-if-not-found : nothing +# - $3 action-if-found : add value to shellvariable +# - $4 action-if-not-found : nothing +# +# LAST MODIFICATION +# +# 2006-12-12 +# +# COPYLEFT +# +# Copyright (c) 2006 Guido U. Draheim +# +# This program is free software; you can redistribute it and/or +# modify it under the terms of the GNU General Public License as +# published by the Free Software Foundation; either version 2 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA +# 02111-1307, USA. +# +# As a special exception, the respective Autoconf Macro's copyright +# owner gives unlimited permission to copy, distribute and modify the +# configure scripts that are the output of Autoconf when processing +# the Macro. You need not follow the terms of the GNU General Public +# License when using or distributing such scripts, even though +# portions of the text of the Macro appear in them. The GNU General +# Public License (GPL) does govern all other use of the material that +# constitutes the Autoconf Macro. +# +# This special exception to the GPL applies to versions of the +# Autoconf Macro released by the Autoconf Macro Archive. When you +# make and distribute a modified version of the Autoconf Macro, you +# may extend this special exception to the GPL to apply to your +# modified version as well. + +AC_DEFUN([AX_CFLAGS_WARN_ALL],[dnl +AS_VAR_PUSHDEF([FLAGS],[CFLAGS])dnl +AS_VAR_PUSHDEF([VAR],[ac_cv_cflags_warn_all])dnl +AC_CACHE_CHECK([m4_ifval($1,$1,FLAGS) for maximum warnings], +VAR,[VAR="no, unknown" + AC_LANG_SAVE + AC_LANG_C + ac_save_[]FLAGS="$[]FLAGS" +for ac_arg dnl +in "-pedantic % -Wall" dnl GCC + "-xstrconst % -v" dnl Solaris C + "-std1 % -verbose -w0 -warnprotos" dnl Digital Unix + "-qlanglvl=ansi % -qsrcmsg -qinfo=all:noppt:noppc:noobs:nocnd" dnl AIX + "-ansi -ansiE % -fullwarn" dnl IRIX + "+ESlit % +w1" dnl HP-UX C + "-Xc % -pvctl[,]fullmsg" dnl NEC SX-5 (Super-UX 10) + "-h conform % -h msglevel 2" dnl Cray C (Unicos) + # +do FLAGS="$ac_save_[]FLAGS "`echo $ac_arg | sed -e 's,%%.*,,' -e 's,%,,'` + AC_TRY_COMPILE([],[return 0;], + [VAR=`echo $ac_arg | sed -e 's,.*% *,,'` ; break]) +done + FLAGS="$ac_save_[]FLAGS" + AC_LANG_RESTORE +]) +case ".$VAR" in + .ok|.ok,*) m4_ifvaln($3,$3) ;; + .|.no|.no,*) m4_ifvaln($4,$4,[m4_ifval($2,[ + AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"])]) ;; + *) m4_ifvaln($3,$3,[ + if echo " $[]m4_ifval($1,$1,FLAGS) " | grep " $VAR " 2>&1 >/dev/null + then AC_RUN_LOG([: m4_ifval($1,$1,FLAGS) does contain $VAR]) + else AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR" + fi ]) ;; +esac +AS_VAR_POPDEF([VAR])dnl +AS_VAR_POPDEF([FLAGS])dnl +]) + +dnl the only difference - the LANG selection... and the default FLAGS + +AC_DEFUN([AX_CXXFLAGS_WARN_ALL],[dnl +AS_VAR_PUSHDEF([FLAGS],[CXXFLAGS])dnl +AS_VAR_PUSHDEF([VAR],[ac_cv_cxxflags_warn_all])dnl +AC_CACHE_CHECK([m4_ifval($1,$1,FLAGS) for maximum warnings], +VAR,[VAR="no, unknown" + AC_LANG_SAVE + AC_LANG_CPLUSPLUS + ac_save_[]FLAGS="$[]FLAGS" +for ac_arg dnl +in "-pedantic % -Wall" dnl GCC + "-xstrconst % -v" dnl Solaris C + "-std1 % -verbose -w0 -warnprotos" dnl Digital Unix + "-qlanglvl=ansi % -qsrcmsg -qinfo=all:noppt:noppc:noobs:nocnd" dnl AIX + "-ansi -ansiE % -fullwarn" dnl IRIX + "+ESlit % +w1" dnl HP-UX C + "-Xc % -pvctl[,]fullmsg" dnl NEC SX-5 (Super-UX 10) + "-h conform % -h msglevel 2" dnl Cray C (Unicos) + # +do FLAGS="$ac_save_[]FLAGS "`echo $ac_arg | sed -e 's,%%.*,,' -e 's,%,,'` + AC_TRY_COMPILE([],[return 0;], + [VAR=`echo $ac_arg | sed -e 's,.*% *,,'` ; break]) +done + FLAGS="$ac_save_[]FLAGS" + AC_LANG_RESTORE +]) +case ".$VAR" in + .ok|.ok,*) m4_ifvaln($3,$3) ;; + .|.no|.no,*) m4_ifvaln($4,$4,[m4_ifval($2,[ + AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $2"])]) ;; + *) m4_ifvaln($3,$3,[ + if echo " $[]m4_ifval($1,$1,FLAGS) " | grep " $VAR " 2>&1 >/dev/null + then AC_RUN_LOG([: m4_ifval($1,$1,FLAGS) does contain $VAR]) + else AC_RUN_LOG([: m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR"]) + m4_ifval($1,$1,FLAGS)="$m4_ifval($1,$1,FLAGS) $VAR" + fi ]) ;; +esac +AS_VAR_POPDEF([VAR])dnl +AS_VAR_POPDEF([FLAGS])dnl +]) + +dnl implementation tactics: +dnl the for-argument contains a list of options. The first part of +dnl these does only exist to detect the compiler - usually it is +dnl a global option to enable -ansi or -extrawarnings. All other +dnl compilers will fail about it. That was needed since a lot of +dnl compilers will give false positives for some option-syntax +dnl like -Woption or -Xoption as they think of it is a pass-through +dnl to later compile stages or something. The "%" is used as a +dnl delimimiter. A non-option comment can be given after "%%" marks +dnl which will be shown but not added to the respective C/CXXFLAGS. + + + + + + + + +dnl matlabdir.m4 --- define Matlab directory names. +dnl +dnl Copyright (C) 2002, 2003 Ralph Schleicher +dnl +dnl This program is free software; you can redistribute it and/or +dnl modify it under the terms of the GNU General Public License as +dnl published by the Free Software Foundation; either version 2, +dnl or (at your option) any later version. +dnl +dnl This program is distributed in the hope that it will be useful, +dnl but WITHOUT ANY WARRANTY; without even the implied warranty of +dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +dnl GNU General Public License for more details. +dnl +dnl You should have received a copy of the GNU General Public License +dnl along with this program; see the file COPYING. If not, write to +dnl the Free Software Foundation, Inc., 59 Temple Place, Suite 330, +dnl Boston, MA 02111-1307, USA. +dnl +dnl As a special exception to the GNU General Public License, if +dnl you distribute this file as part of a program that contains a +dnl configuration script generated by GNU Autoconf, you may include +dnl it under the same distribution terms that you use for the rest +dnl of that program. +dnl +dnl Code: + +# AX_MATLAB_DIR +# ------------- +# Define Matlab directory names. +AC_DEFUN([AX_MATLAB_DIR], +[dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB_VERSION]) +AC_REQUIRE([AC_CANONICAL_HOST]) +ax_matlab_dir="\${datadir}/matlab" +AC_ARG_WITH([matlab-dir], AC_HELP_STRING([--with-matlab-dir=ARG], [use ARG as the top-level installation directory for Matlab files [[$(datadir)/matlab]]]), +[case $withval in + yes | no) + AC_MSG_ERROR([invalid value '$withval' for --with-matlab-dir]) + ;; + *) + ax_matlab_dir=$withval + ;; +esac]) +AC_MSG_CHECKING([for top-level installation directory for Matlab files]) +AC_MSG_RESULT([$ax_matlab_dir]) +matlabdir=$ax_matlab_dir +AC_SUBST([matlabdir]) +matlabverdir="\${matlabdir}/$MATLAB_VERSION" +AC_SUBST([matlabverdir]) +matlabarchdir="\${matlabverdir}/$host" +AC_SUBST([matlabarchdir]) +matlabprivatedir="\${matlabdir}/private" +AC_SUBST([matlabprivatedir]) +matlabprivateverdir="\${matlabverdir}/private" +AC_SUBST([matlabprivateverdir]) +matlabprivatearchdir="\${matlabarchdir}/private" +AC_SUBST([matlabprivatearchdir]) +]) + +dnl matlabdir.m4 ends here + +dnl matlabver.m4 --- check for Matlab version number. +dnl +dnl Copyright (C) 2000--2003 Ralph Schleicher +dnl +dnl This program is free software; you can redistribute it and/or +dnl modify it under the terms of the GNU General Public License as +dnl published by the Free Software Foundation; either version 2, +dnl or (at your option) any later version. +dnl +dnl This program is distributed in the hope that it will be useful, +dnl but WITHOUT ANY WARRANTY; without even the implied warranty of +dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +dnl GNU General Public License for more details. +dnl +dnl You should have received a copy of the GNU General Public License +dnl along with this program; see the file COPYING. If not, write to +dnl the Free Software Foundation, Inc., 59 Temple Place, Suite 330, +dnl Boston, MA 02111-1307, USA. +dnl +dnl As a special exception to the GNU General Public License, if +dnl you distribute this file as part of a program that contains a +dnl configuration script generated by GNU Autoconf, you may include +dnl it under the same distribution terms that you use for the rest +dnl of that program. +dnl +dnl Code: + +# AX_MATLAB_VERSION +# ----------------- +# Check for Matlab version number. +AC_DEFUN([AX_MATLAB_VERSION], +[dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AC_PROG_CC]) +AC_REQUIRE([AX_MATLAB]) +AC_CACHE_CHECK([for Matlab version], [ax_cv_matlab_version], +[if test "${MATLAB_VERSION+set}" = set ; then + ax_cv_matlab_version=$MATLAB_VERSION +else + ax_cv_matlab_version= + # Loop over all known architectures. The final dot covers + # Matlab R11 and Matlab V4 for Windows. + for ax_arch in alpha glnxa64 glnx86 hp700 hpux ibm_rs sgi sol2 win32 mac maci . ; do + for ax_exec_name in matlab$EXEEXT MATLAB ; do + ax_matlab_exec=$MATLAB/bin/$ax_arch/${ax_exec_name} + if test -f $ax_matlab_exec ; then + # For Matlab R12, the version number is stored in a + # shared library. + ax_matlab_exec_2=`find $MATLAB/bin/$ax_arch -type f -name libmwservices\* -print 2> /dev/null` + if test -n "$ax_matlab_exec_2" ; then + ax_cv_matlab_version=`strings $ax_matlab_exec_2 2> /dev/null | egrep '^\|build_version_\|@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^|build_version_|\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + # For Matlab R11 and Matlab V4, the version number + # is stored in the executable program. + ax_cv_matlab_version=`strings $ax_matlab_exec 2> /dev/null | egrep '^@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+\.@<:@0-9@:>@+' | head -1 | sed 's/^\(@<:@0-9@:>@*\.@<:@0-9@:>@*\).*/\1/'` + if test -n "$ax_cv_matlab_version" ; then + break + fi + fi + done + if test -n "$ax_cv_matlab_version" ; then + break + fi + done + if test -z "$ax_cv_matlab_version" ; then + ax_cv_matlab_version="not found" + fi +fi]) +case $ax_cv_matlab_version in + @<:@1-9@:>@.@<:@0-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@.@<:@0-9@:>@) + MATLAB_VERSION=$ax_cv_matlab_version + MATLAB_MAJOR=`echo $MATLAB_VERSION | sed -e 's/^\(@<:@0-9@:>@*\)\.@<:@0-9@:>@*.*/\1/'` + MATLAB_MINOR=`echo $MATLAB_VERSION | sed -e 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` + ;; + *) + if test x$ax_enable_matlab = xyes ; then + AC_MSG_ERROR([can not determine Matlab version number]) + fi + MATLAB_VERSION= + MATLAB_MAJOR= + MATLAB_MINOR= + ;; +esac +AC_SUBST([MATLAB_VERSION]) +AC_SUBST([MATLAB_MAJOR]) +AC_SUBST([MATLAB_MINOR]) +if test x$MATLAB_VERSION != x ; then + AC_DEFINE_UNQUOTED([MATLAB_MAJOR], [$MATLAB_MAJOR], [Define to the Matlab major version number.]) + AC_DEFINE_UNQUOTED([MATLAB_MINOR], [$MATLAB_MINOR], [Define to the Matlab minor version number.]) +fi +]) + +# AX_REQUIRE_MATLAB_VERSION([MINIMUM-VERSION]) +# -------------------------------------------- +# Check if Matlab version number is sufficient. +AC_DEFUN([AX_REQUIRE_MATLAB_VERSION], +[dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB_VERSION]) +if test x$MATLAB_VERSION = x ; then + AC_MSG_ERROR([can not determine Matlab version number]) +fi +m4_if([$1], [], [], +[AC_MSG_CHECKING([if Matlab version is sufficient]) +ax_version='$1' +case $ax_version in + @<:@1-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@) + ax_major=$ax_version + ax_minor='' + ;; + @<:@1-9@:>@.@<:@0-9@:>@ | @<:@1-9@:>@@<:@0-9@:>@.@<:@0-9@:>@) + ax_major=`echo $ax_version | sed 's/^\(@<:@0-9@:>@*\)\.@<:@0-9@:>@*.*/\1/'` + ax_minor=`echo $ax_version | sed 's/^@<:@0-9@:>@*\.\(@<:@0-9@:>@*\).*/\1/'` + ;; + *) + AC_MSG_RESULT([failure]) + AC_MSG_NOTICE([report this bug to the responsible package maintainer]) + AC_MSG_ERROR([invalid Matlab version number argument to AX_REQUIRE_MATLAB_VERSION]) + ;; +esac +ax_ans=yes +if test $MATLAB_MAJOR -eq $ax_major ; then + if test x$ax_minor != x && test $MATLAB_MINOR -lt $ax_minor ; then + ax_ans=no + fi +elif test $MATLAB_MAJOR -lt $ax_major ; then + ax_ans=no +fi +AC_MSG_RESULT([$ax_ans]) +if test x$ax_ans = xno ; then + AC_MSG_ERROR([require Matlab version $ax_version or above]) +fi]) +]) + +dnl matlabver.m4 ends here + +dnl matlab.m4 --- check for Matlab. +dnl +dnl Copyright (C) 2000--2003 Ralph Schleicher +dnl +dnl This program is free software; you can redistribute it and/or +dnl modify it under the terms of the GNU General Public License as +dnl published by the Free Software Foundation; either version 2, +dnl or (at your option) any later version. +dnl +dnl This program is distributed in the hope that it will be useful, +dnl but WITHOUT ANY WARRANTY; without even the implied warranty of +dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +dnl GNU General Public License for more details. +dnl +dnl You should have received a copy of the GNU General Public License +dnl along with this program; see the file COPYING. If not, write to +dnl the Free Software Foundation, Inc., 59 Temple Place, Suite 330, +dnl Boston, MA 02111-1307, USA. +dnl +dnl As a special exception to the GNU General Public License, if +dnl you distribute this file as part of a program that contains a +dnl configuration script generated by GNU Autoconf, you may include +dnl it under the same distribution terms that you use for the rest +dnl of that program. +dnl +dnl Code: + +# AX_MATLAB +# --------- +# Check for Matlab. +AC_DEFUN([AX_MATLAB], +[dnl +AC_PREREQ([2.50]) +ax_enable_matlab= +AC_ARG_WITH([matlab-dir], AC_HELP_STRING([--with-matlab-dir=ARG], [check for Matlab [[yes]]]), +[case $withval in + yes | no) + # Explicitly enable or disable Matlab but determine + # Matlab prefix automatically. + ax_enable_matlab=$withval + ;; + *) + # Enable Matlab and use ARG as the Matlab prefix. + # ARG must be an existing directory. + ax_enable_matlab=yes + MATLAB=`cd "${withval-/}" > /dev/null 2>&1 && pwd` + if test -z "$MATLAB" ; then + AC_MSG_ERROR([invalid value '$withval' for --with-matlab]) + fi + ;; +esac]) +if test x$ax_enable_matlab != xno ; then +AC_CACHE_CHECK([for Matlab prefix], [ax_cv_matlab], +[if test "${MATLAB+set}" = set ; then + ax_cv_matlab=`cd "${MATLAB-/}" > /dev/null 2>&1 && pwd` +else + ax_cv_matlab= + IFS=${IFS= } ; ax_ifs=$IFS ; IFS=: + for ax_dir in ${PATH-/opt/bin:/usr/local/bin:/usr/bin:/bin} ; do + if test -z "$ax_dir" ; then + ax_dir=. + fi + if test -x "$ax_dir/matlab" ; then + ax_dir=`echo "$ax_dir" | sed 's,/bin$,,'` + # Directory sanity check. + ax_cv_matlab=`cd "${ax_dir-/}" > /dev/null 2>&1 && pwd` + if test -n "$ax_cv_matlab" ; then + break + fi + fi + done + IFS=$ax_ifs +fi +if test -z "$ax_cv_matlab" ; then + ax_cv_matlab="not found" +fi]) +if test "$ax_cv_matlab" = "not found" ; then + unset MATLAB +else + # Strip trailing dashes. + MATLAB=`echo "$ax_cv_matlab" | sed 's,/*$,,'` +fi +AC_MSG_CHECKING([whether to enable Matlab support]) +if test x$ax_enable_matlab != xno ; then + if test "${MATLAB+set}" = set && test -d "$MATLAB/extern/include" ; then + ax_enable_matlab=yes + elif test x$ax_enable_matlab = x ; then + ax_enable_matlab=no + else + # Fail if Matlab was explicitly enabled. + AC_MSG_RESULT([failure]) + AC_MSG_ERROR([check your Matlab setup]) + fi +fi +AC_MSG_RESULT([$ax_enable_matlab]) +if test x$ax_enable_matlab = xyes ; then + AC_DEFINE([HAVE_MATLAB], [1], [Define if you have Matlab.]) +fi +fi +AC_SUBST([MATLAB]) +]) + +# AX_REQUIRE_MATLAB +# ----------------- +# Like AX_MATLAB but fail if Matlab support is disabled. +AC_DEFUN([AX_REQUIRE_MATLAB], +[dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB]) +if test x$ax_enable_matlab = xno ; then + AC_MSG_ERROR([can not enable Matlab support]) +fi +]) + +# AX_MATLAB_CONDITIONAL +# --------------------- +# Define Matlab conditional for GNU Automake. +AC_DEFUN([AX_MATLAB_CONDITIONAL], +[dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB]) +AM_CONDITIONAL([MATLAB], [test x$ax_enable_matlab = xyes]) +]) + +dnl matlab.m4 ends here + +dnl mex.m4 --- check for mex(1) command. +dnl +dnl Copyright (C) 2000--2003 Ralph Schleicher +dnl +dnl This program is free software; you can redistribute it and/or +dnl modify it under the terms of the GNU General Public License as +dnl published by the Free Software Foundation; either version 2, +dnl or (at your option) any later version. +dnl +dnl This program is distributed in the hope that it will be useful, +dnl but WITHOUT ANY WARRANTY; without even the implied warranty of +dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +dnl GNU General Public License for more details. +dnl +dnl You should have received a copy of the GNU General Public License +dnl along with this program; see the file COPYING. If not, write to +dnl the Free Software Foundation, Inc., 59 Temple Place, Suite 330, +dnl Boston, MA 02111-1307, USA. +dnl +dnl As a special exception to the GNU General Public License, if +dnl you distribute this file as part of a program that contains a +dnl configuration script generated by GNU Autoconf, you may include +dnl it under the same distribution terms that you use for the rest +dnl of that program. +dnl +dnl Code: + +# AX_PATH_MEX +# ----------- +# Check for mex(1) command. +AC_DEFUN([AX_PATH_MEX], +[dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_MATLAB]) +AC_REQUIRE([AX_MEX_OPTIONS]) +AC_REQUIRE([AC_CANONICAL_HOST]) +if test "${MEX+set}" != set ; then + case $host_os in + *cygwin* | *mingw32*) + ax_list='mextool mex mex.bat' + ;; + *) + ax_list='mex' + ;; + esac + AC_PATH_PROGS([MEX], $ax_list, mex, $MATLAB/bin:$PATH) +fi +AC_SUBST([MEX]) +if test "${MEXFLAGS+set}" != set ; then + MEXFLAGS=-O +fi +AC_SUBST([MEXFLAGS]) +if test "${MEXLDADD+set}" != set ; then + MEXLDADD= +fi +AC_SUBST([MEXLDADD]) +]) + +dnl mex.m4 ends here + +dnl mexopt.m4 --- check for MEX options file. +dnl +dnl Copyright (C) 2001--2003 Ralph Schleicher +dnl +dnl This program is free software; you can redistribute it and/or +dnl modify it under the terms of the GNU General Public License as +dnl published by the Free Software Foundation; either version 2, +dnl or (at your option) any later version. +dnl +dnl This program is distributed in the hope that it will be useful, +dnl but WITHOUT ANY WARRANTY; without even the implied warranty of +dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +dnl GNU General Public License for more details. +dnl +dnl You should have received a copy of the GNU General Public License +dnl along with this program; see the file COPYING. If not, write to +dnl the Free Software Foundation, Inc., 59 Temple Place, Suite 330, +dnl Boston, MA 02111-1307, USA. +dnl +dnl As a special exception to the GNU General Public License, if +dnl you distribute this file as part of a program that contains a +dnl configuration script generated by GNU Autoconf, you may include +dnl it under the same distribution terms that you use for the rest +dnl of that program. +dnl +dnl Code: + +# AX_MEX_OPTIONS +# -------------- +# Check for MEX options file. +AC_DEFUN([AX_MEX_OPTIONS], +[dnl +AC_PREREQ([2.50]) +mex_options=yes +AC_ARG_WITH([mex-options], AC_HELP_STRING([--with-mex-options=ARG], [use MEX options file ARG [[standard]]]), +[mex_options=$withval]) +AC_MSG_CHECKING([for MEX options file handling]) +case $mex_options in + yes) + AC_MSG_RESULT([standard]) + mexopts_sh= + ;; + no) + AC_MSG_RESULT([disabled]) + mexopts_sh=$ac_aux_dir/noopts.sh + ;; + *) + AC_MSG_RESULT([enabled]) + mexopts_sh=$mex_options + ;; +esac +if test -n "$mexopts_sh" ; then + AC_MSG_CHECKING([whether MEX options file exists]) + if test -f "$mexopts_sh" ; then + AC_MSG_RESULT([yes]) + # Canonicalize file name. + mexopts_sh_dir=`echo "$mexopts_sh" | sed 's,[[^/]]*$,,'` + mexopts_sh_dir=`cd "${mexopts_sh_dir-.}" && pwd` + mexopts_sh_name=`echo "$mexopts_sh" | sed 's,.*/,,'` + mexopts_sh="$mexopts_sh_dir/$mexopts_sh_name" + else + AC_MSG_RESULT([no]) + AC_MSG_ERROR([$mexopts_sh: no such file]) + fi + MEXOPTS="-f $mexopts_sh" +else + MEXOPTS= +fi +AC_SUBST([mexopts_sh]) +AC_SUBST([MEXOPTS]) +]) + +dnl mexopt.m4 ends here + +dnl mexext.m4 --- check for MEX-file suffix. +dnl +dnl Copyright (C) 2000--2003 Ralph Schleicher +dnl +dnl This program is free software; you can redistribute it and/or +dnl modify it under the terms of the GNU General Public License as +dnl published by the Free Software Foundation; either version 2, +dnl or (at your option) any later version. +dnl +dnl This program is distributed in the hope that it will be useful, +dnl but WITHOUT ANY WARRANTY; without even the implied warranty of +dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +dnl GNU General Public License for more details. +dnl +dnl You should have received a copy of the GNU General Public License +dnl along with this program; see the file COPYING. If not, write to +dnl the Free Software Foundation, Inc., 59 Temple Place, Suite 330, +dnl Boston, MA 02111-1307, USA. +dnl +dnl As a special exception to the GNU General Public License, if +dnl you distribute this file as part of a program that contains a +dnl configuration script generated by GNU Autoconf, you may include +dnl it under the same distribution terms that you use for the rest +dnl of that program. +dnl +dnl Code: + +# AX_MEXEXT +# --------- +# Check for MEX-file suffix. +AC_DEFUN([AX_MEXEXT], +[dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_PATH_MEX]) +AC_CACHE_CHECK([for MEX-file suffix], [ax_cv_mexext], +[if test "${MEXEXT+set}" = set ; then + ax_cv_mexext="$MEXEXT" +else + if test -x ${MATLAB}/bin/mexext ; then + ax_cv_mexext=`${MATLAB}/bin/mexext` + fi +fi +if test "x${ax_cv_mexext}" = "x" ; then + echo 'mexFunction () {}' > ax_c_test.c + $MEX $MEXOPTS $MEXFLAGS -output ax_c_test ax_c_test.c $MEXLDADD 2> /dev/null 1>&2 + if test -f ax_c_test.dll ; then + ax_cv_mexext=dll + elif test -f ax_c_test.mex ; then + ax_cv_mexext=mex + elif test -f ax_c_test.mexaxp ; then + ax_cv_mexext=mexaxp + elif test -f ax_c_test.mexglx ; then + ax_cv_mexext=mexglx + elif test -f ax_c_test.mexa64 ; then + ax_cv_mexext=mexa64 + elif test -f ax_c_test.mexmac ; then + ax_cv_mexext=mexmac + elif test -f ax_c_test.mexmaci ; then + ax_cv_mexext=mexmaci + elif test -f ax_c_test.mexhp7 ; then + ax_cv_mexext=mexhp7 + elif test -f ax_c_test.mexhpux ; then + ax_cv_mexext=mexhpux + elif test -f ax_c_test.mexrs6 ; then + ax_cv_mexext=mexrs6 + elif test -f ax_c_test.mexsg ; then + ax_cv_mexext=mexsg + elif test -f ax_c_test.mexsol ; then + ax_cv_mexext=mexsol + elif test -f ax_c_test.mexs64 ; then + ax_cv_mexext=mexs64 + elif test -f ax_c_test.mexw32 ; then + ax_cv_mexext=mexw32 + elif test -f ax_c_test.mexw64 ; then + ax_cv_mexext=mexw64 + else + ax_cv_mexext=unknown + fi + rm -f ax_c_test* +fi]) +MEXEXT="$ax_cv_mexext" +AC_SUBST([MEXEXT]) +]) + +# AX_DOT_MEXEXT +# ------------- +# Check for MEX-file suffix with leading dot. +AC_DEFUN([AX_DOT_MEXEXT], +[dnl +AC_REQUIRE([AX_MEXEXT]) +case $MEXEXT in + .*) + ;; + unknown) + ;; + *) + if test -n "$MEXEXT" ; then + MEXEXT=.$MEXEXT + AC_MSG_RESULT([setting MEX-file suffix to $MEXEXT]) + AC_SUBST([MEXEXT]) + fi + ;; +esac +]) + +dnl mexext.m4 ends here + +dnl ccmex.m4 --- check how to compile c programs using mex +dnl +dnl Copyright (C) 2007 Duncan Brown +dnl +dnl This program is free software; you can redistribute it and/or +dnl modify it under the terms of the GNU General Public License as +dnl published by the Free Software Foundation; either version 2, +dnl or (at your option) any later version. +dnl +dnl This program is distributed in the hope that it will be useful, +dnl but WITHOUT ANY WARRANTY; without even the implied warranty of +dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +dnl GNU General Public License for more details. +dnl +dnl You should have received a copy of the GNU General Public License +dnl along with this program; see the file COPYING. If not, write to +dnl the Free Software Foundation, Inc., 59 Temple Place, Suite 330, +dnl Boston, MA 02111-1307, USA. +dnl +dnl As a special exception to the GNU General Public License, if +dnl you distribute this file as part of a program that contains a +dnl configuration script generated by GNU Autoconf, you may include +dnl it under the same distribution terms that you use for the rest +dnl of that program. +dnl +dnl Code: + +# AX_CC_MEX +# ------------ +# Check for the flags needed to build a file with mex +AC_DEFUN([AX_CC_MEX], +[dnl +AC_REQUIRE([AX_PATH_MEX]) +AC_REQUIRE([AX_DOT_MEXEXT]) +AC_LANG([C]) + +dnl Source code for the test matlab C program +ac_mex_source='[#include "mex.h" +void mexFunction( int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) { return; }]' + +dnl Check that the test C program can be compiled with mex +ac_exeext_save=$ac_exeext +ac_exeext=$MEXEXT +ac_link_save=$ac_link +ac_link='$MEX $MEXOPTS $MEXFLAGS -output conftest$ac_exeext conftest.$ac_ext $MEXLDADD >&AS_MESSAGE_LOG_FD' +AC_MSG_CHECKING([if mex works]) +AC_LINK_IFELSE([AC_LANG_SOURCE($ac_mex_source)], +[AC_MSG_RESULT([yes])], +[AC_MSG_RESULT([no])]) + +dnl Try to figure out how mex compiles a C program +ax_cv_mex_version= +ac_cv_mex_cppflags= +ac_cv_mex_includes= +ac_cv_mex_cflags= +ac_cv_mex_libs= +ac_cv_mex_ldflags= + +dnl Variable that will be subsituted +MEX_VERSION_C= +MEX_LDFLAGS= +MEX_CPPFLAGS= +MEX_INCLUDES= +MEX_CFLAGS= +MEX_LIBS= +MEX_LDFLAGS= + +AC_MSG_CHECKING([if mex -n works]) +ac_save_MEXOPTS=$MEXOPTS +MEXOPTS="-n $MEXOPTS" +AC_LANG_CONFTEST([AC_LANG_SOURCE($ac_mex_source)]) +(eval echo $as_me:__oline__: \"$ac_link\") >&AS_MESSAGE_LOG_FD +ac_cv_mex_n_output=`eval $ac_link AS_MESSAGE_LOG_FD>&1 2>&1` +ac_cv_mex_n_result=$? +echo "$ac_cv_mex_n_output" >&AS_MESSAGE_LOG_FD +MEXOPTS=$ac_save_MEXOPTS +rm -f conftest* +ac_exeext=$ac_exeext_save +ac_link=$ac_link_save + +if test $ac_cv_mex_n_result -eq 0 ; then + ac_cv_mex_working=yes + AC_MSG_RESULT([$ac_cv_mex_working]) + + dnl Save positional arguments (if any) + ac_save_positional="$[@]" + + set X $ac_cv_mex_n_output + while test $[@%:@] != 1; do + shift + ac_arg=$[1] + case $ac_arg in + *mexversion.c) + ax_cv_mex_version=$ac_arg + ;; + -pthread) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cflags, , + ac_cv_mex_cflags="$ac_cv_mex_cflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + -mt) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cflags, , + ac_cv_mex_cflags="$ac_cv_mex_cflags $ac_arg") + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + -ansi) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + ;; + -D*) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cppflags, , + ac_cv_mex_cppflags="$ac_cv_mex_cppflags $ac_arg") + ;; + -I*) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_includes, , + ac_cv_mex_includes="$ac_cv_mex_includes $ac_arg") + ;; + -f* | -O* | -xO* | -xlibmil ) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_cflags, , + ac_cv_mex_cflags="$ac_cv_mex_cflags $ac_arg") + ;; + -l*) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_libs, , + ac_cv_mex_libs="$ac_cv_mex_libs $ac_arg") + ;; + -L) + # When -L is seen by itself, it takes an argument + # We remove the space between option and argument and re-iterate + # unless we find an empty arg or a new option (starting with -) + case $[2] in + "" | -*);; + *) + ac_arg="$ac_arg$[2]" + shift; shift + set X $ac_arg "$[@]" + ;; + esac + ;; + -L* | -Wl,* | -shared | -bundle | -G) + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + -undefined) + # the darwin linker undefined option takes and argument + ac_arg="$ac_arg $[2]" + shift + _AC_LIST_MEMBER_IF($ac_arg, $ac_cv_mex_ldflags, , + ac_cv_mex_ldflags="$ac_cv_mex_ldflags $ac_arg") + ;; + # ignore everything else + esac + done + + # restore positional arguments + set X $ac_save_positional; shift + + MEX_VERSION_C=$ax_cv_mex_version + + AC_MSG_CHECKING([for CPPFLAGS needed to build mex objects]) + if test "x$ac_cv_mex_cppflags" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_CPPFLAGS=`echo $ac_cv_mex_cppflags | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_CPPFLAGS]) + fi + AC_MSG_CHECKING([for INCLUDES needed to build mex objects]) + if test "x$ac_cv_mex_includes" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_INCLUDES=`echo $ac_cv_mex_includes | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_INCLUDES]) + fi + AC_MSG_CHECKING([for CFLAGS needed to build mex objects]) + if test "x$ac_cv_mex_cflags" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_CFLAGS=`echo $ac_cv_mex_cflags | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_CFLAGS]) + fi + AC_MSG_CHECKING([for LIBS needed to build mex objects]) + if test "x$ac_cv_mex_libs" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_LIBS=`echo $ac_cv_mex_libs | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_LIBS]) + fi + AC_MSG_CHECKING([for LDFLAGS needed to build mex objects]) + if test "x$ac_cv_mex_ldflags" = "x" ; then + AC_MSG_RESULT([none]) + else + MEX_LDFLAGS=`echo $ac_cv_mex_ldflags | sed 's/^[ \t]*//;s/[ \t]*$//'` + AC_MSG_RESULT([$MEX_LDFLAGS]) + fi +else + ac_cv_mex_working=no + AC_MSG_RESULT([$ac_cv_mex_working]) +fi + +AC_SUBST(MEX_VERSION_C) +AC_SUBST(MEX_CPPFLAGS) +AC_SUBST(MEX_INCLUDES) +AC_SUBST(MEX_CFLAGS) +AC_SUBST(MEX_LIBS) +AC_SUBST(MEX_LDFLAGS) + +]) + +# AX_MEX_CONDITIONAL +# --------------------- +# Define Matlab conditional for GNU Automake. +AC_DEFUN([AX_MEX_CONDITIONAL], +[dnl +AC_PREREQ([2.50]) +AC_REQUIRE([AX_CC_MEX]) +AM_CONDITIONAL(MEX, test x$ac_cv_mex_working = xyes) +AM_CONDITIONAL(MEX_VERSION_C, test x$ax_cv_mex_version != x) +]) + +dnl ccmex.m4 ends here + +# AX_MATLAB_SYS_ZLIB +# ------------ +# Matlab preloads an old version of zlib which means that we cannot +# just dynamically link against the libz.so found by the linker. +# Instead we search for a working version of zlib in the system +# location and use that. +AC_DEFUN([AX_MATLAB_SYS_ZLIB], +[dnl +AC_REQUIRE([AX_PATH_MEX]) +AC_LANG([C]) + +ax_matlab_sys_zlib= + +if test x$ax_cv_mexext != xunknown && test x$ax_cv_mexext != x ; then + # Where should we search for libraries + ax_sys_lib_search_path="/lib /usr/lib /usr/local/lib" + + # If this is a 64 bit link box look in the place where redhat keeps libs + if test x$ax_cv_mexext = xmexa64; then + ax_sys_lib_search_path="/lib64 /usr/lib64 /usr/local/lib64 $ax_sys_lib_search_path" + fi + + # set the extension of the library we are looking for + if test x$ax_cv_mexext = xmexmac || test x$ax_cv_mexext = xmexmaci ; then + ax_zlib_lib_ext=".dylib" + else + ax_zlib_lib_ext=".a" + fi + + for lib_path in $ax_sys_lib_search_path ; do + ax_matlab_search_zlib=$lib_path/libz$ax_zlib_lib_ext + + AC_CHECK_FILE([$ax_matlab_search_zlib], + [ + AC_MSG_CHECKING([for gzungetc in $ax_matlab_search_zlib]) + ac_save_LIBS=$LIBS + LIBS="$ax_matlab_search_zlib $LIBS" + AC_LINK_IFELSE( + [ AC_LANG_PROGRAM( ,[[gzungetc();]]) ], + [ + AC_MSG_RESULT([yes]) + ax_matlab_sys_zlib=$ax_matlab_search_zlib + ], + [ AC_MSG_RESULT([no]) ] + ) + LIBS=$ac_save_LIBS + ], ) + + if test x$ax_matlab_sys_zlib != x ; then + break + fi + done +fi + +MATLAB_SYS_ZIB=$ax_matlab_sys_zlib + +AC_SUBST([MATLAB_SYS_ZIB]) + +]) + + +##### http://autoconf-archive.cryp.to/check_zlib.html +# +# SYNOPSIS +# +# CHECK_ZLIB() +# +# DESCRIPTION +# +# This macro searches for an installed zlib library. If nothing was +# specified when calling configure, it searches first in /usr/local +# and then in /usr. If the --with-zlib=DIR is specified, it will try +# to find it in DIR/include/zlib.h and DIR/lib/libz.a. If +# --without-zlib is specified, the library is not searched at all. +# +# If either the header file (zlib.h) or the library (libz) is not +# found, the configuration exits on error, asking for a valid zlib +# installation directory or --without-zlib. +# +# The macro defines the symbol HAVE_LIBZ if the library is found. You +# should use autoheader to include a definition for this symbol in a +# config.h file. Sample usage in a C/C++ source is as follows: +# +# #ifdef HAVE_LIBZ +# #include +# #endif /* HAVE_LIBZ */ +# +# LAST MODIFICATION +# +# 2004-09-20 +# +# COPYLEFT +# +# Copyright (c) 2004 Loic Dachary +# +# This program is free software; you can redistribute it and/or +# modify it under the terms of the GNU General Public License as +# published by the Free Software Foundation; either version 2 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA +# 02111-1307, USA. +# +# As a special exception, the respective Autoconf Macro's copyright +# owner gives unlimited permission to copy, distribute and modify the +# configure scripts that are the output of Autoconf when processing +# the Macro. You need not follow the terms of the GNU General Public +# License when using or distributing such scripts, even though +# portions of the text of the Macro appear in them. The GNU General +# Public License (GPL) does govern all other use of the material that +# constitutes the Autoconf Macro. +# +# This special exception to the GPL applies to versions of the +# Autoconf Macro released by the Autoconf Macro Archive. When you +# make and distribute a modified version of the Autoconf Macro, you +# may extend this special exception to the GPL to apply to your +# modified version as well. + +AC_DEFUN([CHECK_ZLIB], [ +AC_ARG_WITH([zlib], [AS_HELP_STRING([--with-zlib=DIR], [root directory path of zlib installation (defaults to /usr/local or /usr if not found in /usr/local), --without-zlib to disable zlib usage completely])], [], [with_zlib=yes]) + +if test "x$with_zlib" != xno ; then + if test "x$with_zlib" != xyes ; then + ZLIB_HOME=$with_zlib + else + # default locations + ZLIB_HOME=/usr/local + if test ! -f "${ZLIB_HOME}/include/zlib.h" + then + ZLIB_HOME=/usr + fi + fi + + ZLIB_OLD_LDFLAGS=$LDFLAGS + ZLIB_OLD_CPPFLAGS=$LDFLAGS + LDFLAGS="$LDFLAGS -L${ZLIB_HOME}/lib" + CPPFLAGS="$CPPFLAGS -I${ZLIB_HOME}/include" + AC_LANG_PUSH([C]) + AC_CHECK_HEADERS([zlib.h]) + AC_CHECK_LIB([z], [inflateEnd]) + AC_LANG_POP([C]) + + if test "x$ac_cv_header_zlib_h" = "xyes" -a "x$ac_cv_lib_z_inflateEnd" = "xyes" ; then + AC_MSG_RESULT([zlib found in $ZLIB_HOME]) + AC_SUBST([HAVE_LIBZ], [$ac_cv_lib_z_inflateEnd]) + else + LDFLAGS="$ZLIB_OLD_LDFLAGS" + CPPFLAGS="$ZLIB_OLD_CPPFLAGS" + AC_MSG_ERROR(either specify a valid zlib installation with --with-zlib=DIR or disable zlib usage with --without-zlib) + fi +fi]) Index: /issm/trunk/missing =================================================================== --- /issm/trunk/missing (revision 1) +++ /issm/trunk/missing (revision 1) @@ -0,0 +1,1 @@ +link /u/wilkes-r1b/larour/Bin/automake/share/automake-1.10/missing Index: /issm/trunk/reconfigure.sh =================================================================== --- /issm/trunk/reconfigure.sh (revision 1) +++ /issm/trunk/reconfigure.sh (revision 1) @@ -0,0 +1,10 @@ +#!/bin/sh +# this shell script will automatically reconfigure the entire ISSM +# archive. + +rm -rf config.cach +aclocal -I m4 +autoconf +autoheader +automake -a +exit Index: sm/trunk/scripts/BinRead.py =================================================================== --- /issm/trunk/scripts/BinRead.py (revision 28275) +++ (revision ) @@ -1,191 +1,0 @@ -#!/usr/bin/env python3 -import numpy as np -from os import environ, path -import sys -import struct -from argparse import ArgumentParser - -def BinRead(infile, outfile='', verbose=0): #{{{ - - print('reading binary file') - f = open(infile, 'rb') - - if outfile: - sys.stdout = open(outfile, 'w') - - while True: - try: - # Step 1: Read size of record name - recordnamesize = struct.unpack('i', f.read(struct.calcsize('i')))[0] - except struct.error as e: - print('probable EOF: {}'.format(e)) - break - - print('============================================================================') - if verbose > 2: - print('\n recordnamesize = {}'.format(recordnamesize)) - recordname = struct.unpack('{}s'.format(recordnamesize), f.read(recordnamesize))[0].decode('ASCII') - print('field: {}'.format(recordname)) - - # Step 2: Read the data itself - # First read length of record - #reclen = struct.unpack('i', f.read(struct.calcsize('i')))[0] - reclen = struct.unpack('q', f.read(struct.calcsize('q')))[0] - if verbose > 1: - print('reclen = {}'.format(reclen)) - - # Read data code - code = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print('Format = {} (code {})'.format(CodeToFormat(code), code)) - - if code == FormatToCode('Boolean'): - bval = struct.unpack('i', f.read(reclen - struct.calcsize('i')))[0] - print('value = {}'.format(bval)) - - elif code == FormatToCode('Integer'): - ival = struct.unpack('i', f.read(reclen - struct.calcsize('i')))[0] - print('value = {}'.format(ival)) - - elif code == FormatToCode('Double'): - dval = struct.unpack('d', f.read(reclen - struct.calcsize('i')))[0] - print('value = {}'.format(dval)) - - elif code == FormatToCode('String'): - strlen = struct.unpack('i', f.read(struct.calcsize('i')))[0] - if verbose > 1: - print('strlen = {}'.format(strlen)) - sval = struct.unpack('{}s'.format(strlen), f.read(strlen))[0] - print('value = {}'.format(sval)) - - elif code == FormatToCode('BooleanMat'): - # Read matrix type - mattype = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print('mattype = {}'.format(mattype)) - - # Read matrix - s = [0, 0] - s[0] = struct.unpack('i', f.read(struct.calcsize('i')))[0] - s[1] = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print('size = [{}x{}]'.format(s[0], s[1])) - data = np.zeros((s[0], s[1])) - for i in range(s[0]): - for j in range(s[1]): - data[i][j] = struct.unpack('d', f.read(struct.calcsize('d')))[0] - if verbose > 2: - print('data[{}, {}] = {}'.format(i, j, data[i][j])) - - elif code == FormatToCode('IntMat'): - # Read matrix type - mattype = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print('mattype = {}'.format(mattype)) - - # Read matrix - s = [0, 0] - s[0] = struct.unpack('i', f.read(struct.calcsize('i')))[0] - s[1] = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print('size = [{}x{}]'.format(s[0], s[1])) - data = np.zeros((s[0], s[1])) - for i in range(s[0]): - for j in range(s[1]): - data[i][j] = struct.unpack('d', f.read(struct.calcsize('d')))[0] - if verbose > 2: - print('data[{}, {}] = {}'.format(i, j, data[i][j])) - - elif code == FormatToCode('DoubleMat'): - # Read matrix type - mattype = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print('mattype = {}'.format(mattype)) - - # Read matrix - s = [0, 0] - s[0] = struct.unpack('i', f.read(struct.calcsize('i')))[0] - s[1] = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print('size = [{}x{}]'.format(s[0], s[1])) - data = np.zeros((s[0], s[1])) - for i in range(s[0]): - for j in range(s[1]): - data[i][j] = struct.unpack('d', f.read(struct.calcsize('d')))[0] - if verbose > 2: - print('data[{}, {}] = {}'.format(i, j, data[i][j])) - - elif code == FormatToCode('MatArray'): - f.seek(reclen - 4, 1) - print('skipping {} bytes for code {}'.format(code, reclen - 4)) - elif code == FormatToCode('StringArray'): - f.seek(reclen - 4, 1) - print('skipping {} bytes for code {}'.format(code, reclen - 4)) - - else: - raise TypeError('BinRead error message: data type: {} not supported yet! ({})'.format(code, recordname)) - - f.close() -#}}} - -def FormatToCode(format): # {{{ - """This routine takes the format string and converts it into an integer, - which is passed along with the record in order to identify the nature of - the data being sent. - """ - - if format == 'Boolean': - code = 1 - elif format == 'Integer': - code = 2 - elif format == 'Double': - code = 3 - elif format == 'String': - code = 4 - elif format == 'BooleanMat': - code = 5 - elif format == 'IntMat': - code = 6 - elif format == 'DoubleMat': - code = 7 - elif format == 'MatArray': - code = 8 - elif format == 'StringArray': - code = 9 - else: - raise IOError('FormatToCode error message: data type not supported yet!') - - return code -# }}} - -def CodeToFormat(code): # {{{ - """This routine takes a datatype code and converts it to the corresponding - string in order to identify the nature of the data retrieved. - """ - - if code == 1: - format = 'Boolean' - elif code == 2: - format = 'Integer' - elif code == 3: - format = 'Double' - elif code == 4: - format = 'String' - elif code == 5: - format = 'BooleanMat' - elif code == 6: - format = 'IntMat' - elif code == 7: - format = 'DoubleMat' - elif code == 8: - format = 'MatArray' - elif code == 9: - format = 'StringArray' - else: - raise TypeError('FormatToCode error message: code {} not supported yet!'.format(code)) - - return format -# }}} - -if __name__ == '__main__': #{{{ - parser = ArgumentParser(description='BinRead - function to read binary input file.') - parser.add_argument('-f', '--infile', help='name of binary input file', default='') - parser.add_argument('-o', '--outfile', help='optional name of text output file', default='') - parser.add_argument('-v', '--verbose', help='optional level of output', default=0) - args = parser.parse_args() - - BinRead(args.infile, args.outfile, args.verbose) -#}}} Index: sm/trunk/scripts/ConvertAllNetcdfArchivesToArch.m =================================================================== --- /issm/trunk/scripts/ConvertAllNetcdfArchivesToArch.m (revision 28275) +++ (revision ) @@ -1,20 +1,0 @@ -root=pwd; -cd('../test/Archives/'); -ncdir=pwd; -cd(root); - -file_regexp=strcat(ncdir,'/*.nc'); -flist=dir(file_regexp); -fnames={flist.name}'; - -pattern='.nc'; -replacement='.arch'; -for i=1:numel(fnames) - % Remove the extension '.nc' and replace with '.arch' - arch_file_name=regexprep(fnames{i},pattern,replacement); - disp(['Converting ' fnames{i} ' to .arch format']); - % Reconstruct file path - fpath=strcat(ncdir,'/',fnames{i}); - archpath=strcat(ncdir,'/',arch_file_name); - netcdf2arch(fpath,archpath); -end Index: sm/trunk/scripts/DownloadExamplesDatasets.sh =================================================================== --- /issm/trunk/scripts/DownloadExamplesDatasets.sh (revision 28275) +++ (revision ) @@ -1,47 +1,0 @@ -#!/bin/bash -################################################################################ -# This script downloads all datasets needed for running the ISSM tutorials. -# -# The default behavior is to download datasets to the examples/Data directory -# relative to this script. An alternate output directory can be designated by -# supplying a command line argument. -# -# NOTE: -# - This script does not clobber existing files, intentionally. To download and -# unzip new copies, first remove existing files manually. -################################################################################ - -## Constants -# -DATASETS_URL="https://issm.jpl.nasa.gov/documentation/tutorials/datasets" -DIRECTORY_PREFIX=$(cd $(dirname "$0"); pwd)"/../examples/Data" # Default behavior is to download datasets to examples/Data directory relative to this script - -if [ $# -gt 0 ]; then - DIRECTORY_PREFIX=$1 - - if [ ! -d "${DIRECTORY_PREFIX}" ]; then - mkdir -p "${DIRECTORY_PREFIX}" - fi -fi - -# Get content of page that hosts datasets, reduce to just datasets list, then -# parse out dataset links -# -# NOTE: Clear DYLD_LIBRARY_PATH in case we have installed our own copy of cURL -# and $ISSM_DIR/etc/environment.sh has been sourced as there may be a -# conflict between versions of cURL executable and libcurl -# -dataset_urls=$(\ - DYLD_LIBRARY_PATH=""; \ - curl -Ls ${DATASETS_URL} |\ - sed '//,// !d' |\ - sed -n 's/.*
  • .*/\1/p' -) - -# Get datasets -# -echo "Downloading examples datasets..." -wget --quiet --no-clobber --directory-prefix="${DIRECTORY_PREFIX}" -i - <<< "${dataset_urls}" - -# Expand zip files -unzip -n -d "${DIRECTORY_PREFIX}" "${DIRECTORY_PREFIX}/*.zip" Index: sm/trunk/scripts/DownloadExternalPackage.py =================================================================== --- /issm/trunk/scripts/DownloadExternalPackage.py (revision 28275) +++ (revision ) @@ -1,35 +1,0 @@ -#!/usr/bin/env python -# -*- coding: ISO-8859-1 -*- - -import os -import sys -import urllib - -#Check inputs -if(len(sys.argv) != 3): - raise NameError('usage: . / DownloadExternalPackage.py URL localfile') - -url = sys.argv[1] -localFile = sys.argv[2] - -#Remove file if it already exists -if os.path.exists(localFile): - print("File " + localFile + " already exists and will not be downloaded...") - sys.exit() - -#Try to download from url -httpfail = -1 -try: - print("Fetching %s" % localFile) - urllib.request(url, localFile) - httpfail = 0 -except urllib.error.URLError as e: - failureMessage = ''' - =========================================================================== - Unable to download package {} from: {} due to {} - * If URL specified manually - perhaps there is a typo? - * If your network is disconnected - please reconnect - * Alternatively, you can download the above URL manually - =========================================================================== - '''.format(localFile, url, e) - print(failureMessage) Index: sm/trunk/scripts/DownloadExternalPackage.sh =================================================================== --- /issm/trunk/scripts/DownloadExternalPackage.sh (revision 28275) +++ (revision ) @@ -1,66 +1,0 @@ -#!/bin/bash -# -# DownloadExternalPackage.bash -# Generally, used to download a hosted file from a URL -# URL - Location of file to download -# file - File to write to (including path) -# usage: download_external_package.bash URL file - -## Constants -# -MSG_ERR_NO_GET_CMD="No supported file download command was found" -MSG_USAGE="usage: $(basename ${0}) [-h] URL file - URL : Location of file to download - file : File to write to (including path)" - -## Variables -# -OUT_FILE="" -URL="" - -## Check that number of args is 2 (note that this also handles case where user -# explicitly requests help) -# -if [ $# != 2 ] -then - echo "$MSG_USAGE" - exit 0 -fi - -## Retrieve args -# -URL=$1 -OUT_FILE=$2 - -## Check if OUT_FILE already exists -# -if [ -f ${OUT_FILE} ] -then - echo "File ${OUT_FILE} already exists and will not be downloaded..." - exit 0 -fi - -## Download file -# -if [ ! -z `which curl` ]; then - curl --silent $URL -o $OUT_FILE - - # Try wget if curl exists but fails - if [ $? -ne 0 ]; then - if [ ! -z `which wget` ]; then - wget --quiet -O $OUT_FILE $URL - - if [ $? -ne 0 ]; then - echo "Error: both curl and wget failed. To debug, download package manually using curl without '--silent' option and/or wget without '--quiet' option." - exit 0 - fi - else - echo $MSG_ERR_NO_GET_CMD - exit 0 - fi - fi -elif [ ! -z `which wget` ]; then - wget --quiet -O $OUT_FILE $URL -else - echo $MSG_ERR_NO_GET_CMD -fi Index: sm/trunk/scripts/GenerateReferences.sh =================================================================== --- /issm/trunk/scripts/GenerateReferences.sh (revision 28275) +++ (revision ) @@ -1,38 +1,0 @@ -#!/bin/bash -#Generate a RTF file with references provided in CITE -#Use AGU bibliography style and delete labels for easy copy/paste -#Version: 04/28/11 - -#Genetare a pdf with the list of references provided in $CITE -CITE="Joughin2009,Rignot2002,Frey2001" - -#First erase files; -rm -rf references.rtf - -#create Latex file -cat < references.tex -\documentclass{article} -\bibliographystyle{agu} -\begin{document} -\nocite{$CITE} -\bibliography{$JPL_SVN/publications/bibtex/references} -\end{document} -END -#Generate pdf -echo "Compiling document" -latex -interaction=batchmode -file-line-error references.tex > /dev/null -echo "Running Bibtex" -bibtex references -echo "Removing labels" -cat references.bbl | sed -e "s-ibitem.*\]-DELETE-" | grep -v DELETE > references.bak1 #delete labels that hold in one line -cat references.bak1 | sed -e "/ibitem/,/]/d" > references.bak2 #delete labels that are on multiple lines -mv references.bak2 references.bbl -echo "Converting to rtf" -$ISSM_DIR/externalpackages/latex2rtf/install/latex2rtf -P $ISSM_DIR/externalpackages/latex2rtf/install/cfg/ references - -#Remove all but rtf file -rm -rf references.[!rtf]* -rm -rf references.tex - -#open output -#open references.rtf Index: sm/trunk/scripts/OutbinRead.py =================================================================== --- /issm/trunk/scripts/OutbinRead.py (revision 28275) +++ (revision ) @@ -1,142 +1,0 @@ -#!/usr/bin/env python -import numpy as np -from os import environ, path -import sys -import struct -from argparse import ArgumentParser - -def OutbinRead(filin, filout='', verbose=0): #{{{ - - yts = 365*24*3600. - - print("reading binary file.") - f = open(filin, 'rb') - - if filout: - sys.stdout = open(filout, 'w') - - while True: - try: - #Step 1: read size of record name - recordnamesize = struct.unpack('i', f.read(struct.calcsize('i')))[0] - except struct.error as e: - print("probable EOF: {}".format(e)) - break - - print("============================================================================ ") - if verbose > 2: - print("\n recordnamesize = {}".format(recordnamesize)) - recordname = struct.unpack('{}s'.format(recordnamesize), f.read(recordnamesize))[0] - print("field: {}".format(recordname)) - - #read time and step - time = struct.unpack('d', f.read(struct.calcsize('d')))[0] - step = struct.unpack('i', f.read(struct.calcsize('i')))[0] - if time!=-9999.: time = time/yts - print("time = {} step = {}".format(time,step)) - - #read data code: - code = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print("Format = {} (code {})".format(CodeToFormat(code), code)) - - #read size: - M = struct.unpack('i', f.read(struct.calcsize('i')))[0] - N = 1 #default - - #Step 2: read the data itself. - if code == FormatToCode('Double'): - dval = struct.unpack('d', f.read(struct.calcsize('d')))[0] - print("value = {}".format(dval)) - - elif code == FormatToCode('String'): - strlen = M - if verbose > 1: - print("strlen = {}".format(strlen)) - sval = struct.unpack('{}s'.format(strlen), f.read(strlen))[0] - print("value = '{}'".format(sval)) - - elif code == FormatToCode('IntMat'): - s = [0, 0] - s[0] = M - s[1] = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print("size = [{}x{}]".format(s[0], s[1])) - data = np.zeros((s[0], s[1])) - for i in range(s[0]): - for j in range(s[1]): - data[i][j] = struct.unpack('d', f.read(struct.calcsize('d')))[0] #get to the "c" convention, hence the transpose - if verbose > 2: - print("data[{}, {}] = {}".format(i, j, data[i][j])) - - elif code == FormatToCode('DoubleMat'): - #now read matrix - s = [0, 0] - s[0] = M - s[1] = struct.unpack('i', f.read(struct.calcsize('i')))[0] - print("size = [{}x{}]".format(s[0], s[1])) - if True: - f.read(struct.calcsize('d')*s[0]*s[1]) - else: - data = np.zeros((s[0], s[1])) - for i in range(s[0]): - for j in range(s[1]): - data[i][j] = struct.unpack('d', f.read(struct.calcsize('d')))[0] #get to the "c" convention, hence the transpose - if verbose > 2: - print("data[{}, {}] = {}".format(i, j, data[i][j])) - - else: - raise TypeError('OutbinRead error message: data type: {} not supported yet! ({})'.format(code, recordname)) - - f.close() -#}}} - -def FormatToCode(format): # {{{ - """ - This routine takes the format string, and hardcodes it into an integer, which - is passed along the record, in order to identify the nature of the dataset being - sent. - """ - - if format == 'Double': - code = 1 - elif format == 'String': - code = 2 - elif format == 'DoubleMat': - code = 3 - elif format == 'IntMat': - code = 4 - else: - raise IOError('FormatToCode error message: data type not supported yet!') - - return code -# }}} - -def CodeToFormat(code): # {{{ - """ - This routine takes the format string, and hardcodes it into an integer, which - is passed along the record, in order to identify the nature of the dataset being - sent. - """ - - if code == 1: - format = 'Double' - elif code == 2: - format = 'String' - elif code == 3: - format = 'DoubleMat' - elif code == 4: - format = 'IntMat' - else: - raise TypeError('FormatToCode error message: code {} not supported yet!'.format(code)) - - return format -# }}} - -if __name__ == '__main__': #{{{ - parser = ArgumentParser(description='OutbinRead - function to read binary input file.') - parser.add_argument('-f', '--filin', help='name of binary input file', default='') - parser.add_argument('-o', '--filout', help='optional name of text output file', default='') - parser.add_argument('-v', '--verbose', help='optional level of output', default=0) - args = parser.parse_args() - - OutbinRead(args.filin, args.filout, args.verbose) -#}}} Index: /issm/trunk/scripts/archive.sh =================================================================== --- /issm/trunk/scripts/archive.sh (revision 1) +++ /issm/trunk/scripts/archive.sh (revision 1) @@ -0,0 +1,30 @@ +#!/bin/bash +#This bash routine will create a tar file for the ISSM +#code. Just run the following command: + +#> source ./archive.sh + + +#Some local script functions +function today_date { +suffix=`date | awk '{printf("%s-%s-%s",$2,$3,$6);}'` +echo $suffix; +} + +#Main + +#Cleanup code +cd $ISSM_DIR +make -f MakefileIce clean +make clean +make distclean + +#Get rid of packages +rm packages + +cd $ISSM_DIR/.. + +#Create tar file, with today's date in the title; +today=`today_date` + +tar zcvf issm-1.0-$today.tar.gz `basename $ISSM_DIR` Index: sm/trunk/scripts/automakererun.sh =================================================================== --- /issm/trunk/scripts/automakererun.sh (revision 28275) +++ (revision ) @@ -1,13 +1,0 @@ -#!/bin/sh -# -# automakererun.sh -# Remakes GNU Build System files. -# -# Currently, a wrapper for Autotools' autoreconf script. -# -# Run, -# autoreconf --help -# for more information. - -cd $ISSM_DIR -autoreconf -ivf Index: sm/trunk/scripts/cloc =================================================================== --- /issm/trunk/scripts/cloc (revision 28275) +++ (revision ) @@ -1,11676 +1,0 @@ -#!/usr/bin/env perl -# cloc -- Count Lines of Code {{{1 -# Copyright (C) 2006-2017 Al Danial -# First release August 2006 -# -# Includes code from: -# - SLOCCount v2.26 -# http://www.dwheeler.com/sloccount/ -# by David Wheeler. -# - Regexp::Common v2013031301 -# http://search.cpan.org/~abigail/Regexp-Common-2013031301/lib/Regexp/Common.pm -# by Damian Conway and Abigail. -# - Win32::Autoglob -# http://search.cpan.org/~sburke/Win32-Autoglob-1.01/Autoglob.pm -# by Sean M. Burke. -# - Algorithm::Diff -# http://search.cpan.org/~tyemq/Algorithm-Diff-1.1902/lib/Algorithm/Diff.pm -# by Tye McQueen. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU General Public License as published by -# the Free Software Foundation; either version 2 of the License, or -# (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU General Public License for more details: -# . -# -# 1}}} -my $VERSION = "1.72"; # odd number == beta; even number == stable -my $URL = "github.com/AlDanial/cloc"; # 'https://' pushes header too wide -require 5.006; -# use modules {{{1 -use warnings; -use strict; -use Getopt::Long; -use File::Basename; -use File::Temp qw { tempfile tempdir }; -use File::Find; -use File::Path; -use File::Spec; -use IO::File; -use POSIX "strftime"; - -# Digest::MD5 isn't in the standard distribution. Use it only if installed. -my $HAVE_Digest_MD5 = 0; -eval "use Digest::MD5;"; -if (defined $Digest::MD5::VERSION) { - $HAVE_Digest_MD5 = 1; -} else { - warn "Digest::MD5 not installed; will skip file uniqueness checks.\n"; -} - -# Time::HiRes became standard with Perl 5.8 -my $HAVE_Time_HiRes = 0; -eval "use Time::HiRes;"; -$HAVE_Time_HiRes = 1 if defined $Time::HiRes::VERSION; - -my $HAVE_Rexexp_Common; -# Regexp::Common isn't in the standard distribution. It will -# be installed in a temp directory if necessary. -BEGIN { - if (eval "use Regexp::Common;") { - $HAVE_Rexexp_Common = 1; - } else { - $HAVE_Rexexp_Common = 0; - } -} - -my $HAVE_Algorith_Diff = 0; -# Algorithm::Diff isn't in the standard distribution. It will -# be installed in a temp directory if necessary. -eval "use Algorithm::Diff qw ( sdiff ) "; -if (defined $Algorithm::Diff::VERSION) { - $HAVE_Algorith_Diff = 1; -} else { - Install_Algorithm_Diff(); -} -# print "2 HAVE_Algorith_Diff = $HAVE_Algorith_Diff\n"; -# test_alg_diff($ARGV[$#ARGV - 1], $ARGV[$#ARGV]); die; -# die "Hre=$HAVE_Rexexp_Common Had=$HAVE_Algorith_Diff"; - -# Uncomment next two lines when building Windows executable with perl2exe -# or if running on a system that already has Regexp::Common. -#use Regexp::Common; -#$HAVE_Rexexp_Common = 1; - -#perl2exe_include "Regexp/Common/whitespace.pm" -#perl2exe_include "Regexp/Common/URI.pm" -#perl2exe_include "Regexp/Common/URI/fax.pm" -#perl2exe_include "Regexp/Common/URI/file.pm" -#perl2exe_include "Regexp/Common/URI/ftp.pm" -#perl2exe_include "Regexp/Common/URI/gopher.pm" -#perl2exe_include "Regexp/Common/URI/http.pm" -#perl2exe_include "Regexp/Common/URI/pop.pm" -#perl2exe_include "Regexp/Common/URI/prospero.pm" -#perl2exe_include "Regexp/Common/URI/news.pm" -#perl2exe_include "Regexp/Common/URI/tel.pm" -#perl2exe_include "Regexp/Common/URI/telnet.pm" -#perl2exe_include "Regexp/Common/URI/tv.pm" -#perl2exe_include "Regexp/Common/URI/wais.pm" -#perl2exe_include "Regexp/Common/CC.pm" -#perl2exe_include "Regexp/Common/SEN.pm" -#perl2exe_include "Regexp/Common/number.pm" -#perl2exe_include "Regexp/Common/delimited.pm" -#perl2exe_include "Regexp/Common/profanity.pm" -#perl2exe_include "Regexp/Common/net.pm" -#perl2exe_include "Regexp/Common/zip.pm" -#perl2exe_include "Regexp/Common/comment.pm" -#perl2exe_include "Regexp/Common/balanced.pm" -#perl2exe_include "Regexp/Common/lingua.pm" -#perl2exe_include "Regexp/Common/list.pm" -#perl2exe_include "File/Glob.pm" - -use Text::Tabs qw { expand }; -use Cwd qw { cwd }; -use File::Glob; -# 1}}} -# Usage information, options processing. {{{1 -my $ON_WINDOWS = 0; - $ON_WINDOWS = 1 if ($^O =~ /^MSWin/) or ($^O eq "Windows_NT"); -if ($ON_WINDOWS and $ENV{'SHELL'}) { - if ($ENV{'SHELL'} =~ m{^/}) { - $ON_WINDOWS = 0; # make Cygwin look like Unix - } else { - $ON_WINDOWS = 1; # MKS defines $SHELL but still acts like Windows - } -} - -my $NN = chr(27) . "[0m"; # normal - $NN = "" if $ON_WINDOWS or !(-t STDERR); # -t STDERR: is it a terminal? -my $BB = chr(27) . "[1m"; # bold - $BB = "" if $ON_WINDOWS or !(-t STDERR); -my $script = basename $0; -my $brief_usage = " - cloc -- Count Lines of Code - -Usage: - $script [options] - Count physical lines of source code and comments in the given files - (may be archives such as compressed tarballs or zip files) and/or - recursively below the given directories. - Example: cloc src/ include/ main.c - - $script [options] --diff - Compute differences of physical lines of source code and comments - between a pair of directories or archive files. - Example: cloc --diff Python-3.5.tar.xz python-3.6/ - -$script --help shows full documentation on the options. -http://$URL has numerous examples and more information. -"; -my $usage = " -Usage: $script [options] | | - - Count, or compute differences of, physical lines of source code in the - given files (may be archives such as compressed tarballs or zip files) - and/or recursively below the given directories. - - ${BB}Input Options${NN} - --extract-with= This option is only needed if cloc is unable - to figure out how to extract the contents of - the input file(s) by itself. - Use to extract binary archive files (e.g.: - .tar.gz, .zip, .Z). Use the literal '>FILE<' as - a stand-in for the actual file(s) to be - extracted. For example, to count lines of code - in the input files - gcc-4.2.tar.gz perl-5.8.8.tar.gz - on Unix use - --extract-with='gzip -dc >FILE< | tar xf -' - or, if you have GNU tar, - --extract-with='tar zxf >FILE<' - and on Windows use, for example: - --extract-with=\"\\\"c:\\Program Files\\WinZip\\WinZip32.exe\\\" -e -o >FILE< .\" - (if WinZip is installed there). - --list-file= Take the list of file and/or directory names to - process from , which has one file/directory - name per line. Only exact matches are counted; - relative path names will be resolved starting from - the directory where cloc is invoked. - See also --exclude-list-file. - --vcs= Invoke a system call to to obtain a list of - files to work on. If is 'git', then will - invoke 'git ls-files' to get a file list and - 'git submodule status' to get a list of submodules - whose contents will be ignored. If is 'svn' - then will invoke 'svn list -R'. The primary benefit - is that cloc will then skip files explicitly - excluded by the versioning tool in question, - ie, those in .gitignore or have the svn:ignore - property. - Alternatively may be any system command - that generates a list of files. - Note: cloc must be in a directory which can read - the files as they are returned by . cloc will - not download files from remote repositories. - 'svn list -R' may refer to a remote repository - to obtain file names (and therefore may require - authentication to the remote repository), but - the files themselves must be local. - --unicode Check binary files to see if they contain Unicode - expanded ASCII text. This causes performance to - drop noticeably. - - ${BB}Processing Options${NN} - --autoconf Count .in files (as processed by GNU autoconf) of - recognized languages. - --by-file Report results for every source file encountered. - --by-file-by-lang Report results for every source file encountered - in addition to reporting by language. - --count-and-diff - First perform direct code counts of source file(s) - of and separately, then perform a diff - of these. Inputs may be pairs of files, directories, - or archives. See also --diff, --diff-alignment, - --diff-timeout, --ignore-case, --ignore-whitespace. - --diff Compute differences in code and comments between - source file(s) of and . The inputs - may be pairs of files, directories, or archives. - Use --diff-alignment to generate a list showing - which file pairs where compared. See also - --count-and-diff, --diff-alignment, --diff-timeout, - --ignore-case, --ignore-whitespace. - --diff-timeout Ignore files which take more than seconds - to process. Default is 10 seconds. - (Large files with many repeated lines can cause - Algorithm::Diff::sdiff() to take hours.) - --follow-links [Unix only] Follow symbolic links to directories - (sym links to files are always followed). - --force-lang=[,] - Process all files that have a extension - with the counter for language . For - example, to count all .f files with the - Fortran 90 counter (which expects files to - end with .f90) instead of the default Fortran 77 - counter, use - --force-lang=\"Fortran 90\",f - If is omitted, every file will be counted - with the counter. This option can be - specified multiple times (but that is only - useful when is given each time). - See also --script-lang, --lang-no-ext. - --force-lang-def= Load language processing filters from , - then use these filters instead of the built-in - filters. Note: languages which map to the same - file extension (for example: - MATLAB/Mathematica/Objective C/MUMPS/Mercury; - Pascal/PHP; Lisp/OpenCL; Lisp/Julia; Perl/Prolog) - will be ignored as these require additional - processing that is not expressed in language - definition files. Use --read-lang-def to define - new language filters without replacing built-in - filters (see also --write-lang-def). - --ignore-whitespace Ignore horizontal white space when comparing files - with --diff. See also --ignore-case. - --ignore-case Ignore changes in case; consider upper- and lower- - case letters equivalent when comparing files with - --diff. See also --ignore-whitespace. - --lang-no-ext= Count files without extensions using the - counter. This option overrides internal logic - for files without extensions (where such files - are checked against known scripting languages - by examining the first line for #!). See also - --force-lang, --script-lang. - --max-file-size= Skip files larger than megabytes when - traversing directories. By default, =100. - cloc's memory requirement is roughly twenty times - larger than the largest file so running with - files larger than 100 MB on a computer with less - than 2 GB of memory will cause problems. - Note: this check does not apply to files - explicitly passed as command line arguments. - --original-dir [Only effective in combination with - --strip-comments] Write the stripped files - to the same directory as the original files. - --read-binary-files Process binary files in addition to text files. - This is usually a bad idea and should only be - attempted with text files that have embedded - binary data. - --read-lang-def= Load new language processing filters from - and merge them with those already known to cloc. - If defines a language cloc already knows - about, cloc's definition will take precedence. - Use --force-lang-def to over-ride cloc's - definitions (see also --write-lang-def ). - --script-lang=, Process all files that invoke as a #! - scripting language with the counter for language - . For example, files that begin with - #!/usr/local/bin/perl5.8.8 - will be counted with the Perl counter by using - --script-lang=Perl,perl5.8.8 - The language name is case insensitive but the - name of the script language executable, , - must have the right case. This option can be - specified multiple times. See also --force-lang, - --lang-no-ext. - --sdir= Use as the scratch directory instead of - letting File::Temp chose the location. Files - written to this location are not removed at - the end of the run (as they are with File::Temp). - --skip-uniqueness Skip the file uniqueness check. This will give - a performance boost at the expense of counting - files with identical contents multiple times - (if such duplicates exist). - --stdin-name= Give a file name to use to determine the language - for standard input. (Use - as the input name to - receive source code via STDIN.) - --strip-comments= For each file processed, write to the current - directory a version of the file which has blank - lines and comments removed. The name of each - stripped file is the original file name with - . appended to it. It is written to the - current directory unless --original-dir is on. - --sum-reports Input arguments are report files previously - created with the --report-file option. Makes - a cumulative set of results containing the - sum of data from the individual report files. - --unix Override the operating system autodetection - logic and run in UNIX mode. See also - --windows, --show-os. - --use-sloccount If SLOCCount is installed, use its compiled - executables c_count, java_count, pascal_count, - php_count, and xml_count instead of cloc's - counters. SLOCCount's compiled counters are - substantially faster than cloc's and may give - a performance improvement when counting projects - with large files. However, these cloc-specific - features will not be available: --diff, - --count-and-diff, --strip-comments, --unicode. - --windows Override the operating system autodetection - logic and run in Microsoft Windows mode. - See also --unix, --show-os. - - ${BB}Filter Options${NN} - --exclude-dir=[,D2,] Exclude the given comma separated directories - D1, D2, D3, et cetera, from being scanned. For - example --exclude-dir=.cache,test will skip - all files and subdirectories that have /.cache/ - or /test/ as their parent directory. - Directories named .bzr, .cvs, .hg, .git, and - .svn are always excluded. - This option only works with individual directory - names so including file path separators is not - allowed. Use --fullpath and --not-match-d= - to supply a regex matching multiple subdirectories. - --exclude-ext=[,[...]] - Do not count files having the given file name - extensions. - --exclude-lang=[,L2,] Exclude the given comma separated languages - L1, L2, L3, et cetera, from being counted. - --exclude-list-file= Ignore files and/or directories whose names - appear in . should have one file - name per line. Only exact matches are ignored; - relative path names will be resolved starting from - the directory where cloc is invoked. - See also --list-file. - --fullpath Modifies the behavior of --match-f, --not-match-f, - and --not-match-d to include the file's path - in the regex, not just the file's basename. - (This does not expand each file to include its - absolute path, instead it uses as much of - the path as is passed in to cloc.) - Note: --match-d always looks at the full - path and therefore is unaffected by --fullpath. - --include-lang=[,L2,] Count only the given comma separated languages - L1, L2, L3, et cetera. - --match-d= Only count files in directories matching the Perl - regex. For example - --match-d='/(src|include)/' - only counts files in directories containing - /src/ or /include/. Unlike --not-match-d, - --match-f, and --not-match-f, --match-d always - compares the fully qualified path against the regex. - --not-match-d= Count all files except those in directories - matching the Perl regex. Only the trailing - directory name is compared, for example, when - counting in /usr/local/lib, only 'lib' is - compared to the regex. - Add --fullpath to compare parent directories to - the regex. - Do not include file path separators at the beginning - or end of the regex. - --match-f= Only count files whose basenames match the Perl - regex. For example - --match-f='^[Ww]idget' - only counts files that start with Widget or widget. - Add --fullpath to include parent directories - in the regex instead of just the basename. - --not-match-f= Count all files except those whose basenames - match the Perl regex. Add --fullpath to include - parent directories in the regex instead of just - the basename. - --skip-archive= Ignore files that end with the given Perl regular - expression. For example, if given - --skip-archive='(zip|tar(\.(gz|Z|bz2|xz|7z))?)' - the code will skip files that end with .zip, - .tar, .tar.gz, .tar.Z, .tar.bz2, .tar.xz, and - .tar.7z. - --skip-win-hidden On Windows, ignore hidden files. - - ${BB}Debug Options${NN} - --categorized= Save names of categorized files to . - --counted= Save names of processed source files to . - --diff-alignment= Write to a list of files and file pairs - showing which files were added, removed, and/or - compared during a run with --diff. This switch - forces the --diff mode on. - --explain= Print the filters used to remove comments for - language and exit. In some cases the - filters refer to Perl subroutines rather than - regular expressions. An examination of the - source code may be needed for further explanation. - --help Print this usage information and exit. - --found= Save names of every file found to . - --ignored= Save names of ignored files and the reason they - were ignored to . - --print-filter-stages Print processed source code before and after - each filter is applied. - --show-ext[=] Print information about all known (or just the - given) file extensions and exit. - --show-lang[=] Print information about all known (or just the - given) languages and exit. - --show-os Print the value of the operating system mode - and exit. See also --unix, --windows. - -v[=] Verbose switch (optional numeric value). - -verbose[=] Long form of -v. - --version Print the version of this program and exit. - --write-lang-def= Writes to the language processing filters - then exits. Useful as a first step to creating - custom language definitions (see also - --force-lang-def, --read-lang-def). - - ${BB}Output Options${NN} - --3 Print third-generation language output. - (This option can cause report summation to fail - if some reports were produced with this option - while others were produced without it.) - --by-percent X Instead of comment and blank line counts, show - these values as percentages based on the value - of X in the denominator: - X = 'c' -> # lines of code - X = 'cm' -> # lines of code + comments - X = 'cb' -> # lines of code + blanks - X = 'cmb' -> # lines of code + comments + blanks - For example, if using method 'c' and your code - has twice as many lines of comments as lines - of code, the value in the comment column will - be 200%. The code column remains a line count. - --csv Write the results as comma separated values. - --csv-delimiter= Use the character as the delimiter for comma - separated files instead of ,. This switch forces - --json Write the results as JavaScript Object Notation - (JSON) formatted output. - --md Write the results as Markdown-formatted text. - --out= Synonym for --report-file=. - --progress-rate= Show progress update after every files are - processed (default =100). Set to 0 to - suppress progress output (useful when redirecting - output to STDOUT). - --quiet Suppress all information messages except for - the final report. - --report-file= Write the results to instead of STDOUT. - --sql= Write results as SQL create and insert statements - which can be read by a database program such as - SQLite. If is -, output is sent to STDOUT. - --sql-append Append SQL insert statements to the file specified - by --sql and do not generate table creation - statements. Only valid with the --sql option. - --sql-project= Use as the project identifier for the - current run. Only valid with the --sql option. - --sql-style= - - -
    
-';
-    print "<- html_header\n" if $opt_v > 2;
-} # 1}}}
-sub html_end {                               # {{{1
-return
-'
    - - -'; -} # 1}}} -sub die_unknown_lang { # {{{1 - my ($lang, $option_name) = @_; - die "Unknown language '$lang' used with $option_name option. " . - "The command\n $script --show-lang\n" . - "will print all recognized languages. Language names are " . - "case sensitive.\n" ; -} # 1}}} -sub unicode_file { # {{{1 - my $file = shift @_; - - print "-> unicode_file($file)\n" if $opt_v > 2; - return 0 if (-s $file > 2_000_000); - # don't bother trying to test binary files bigger than 2 MB - - my $IN = new IO::File $file, "r"; - if (!defined $IN) { - warn "Unable to read $file; ignoring.\n"; - return 0; - } - my @lines = <$IN>; - $IN->close; - - if (unicode_to_ascii( join('', @lines) )) { - print "<- unicode_file()\n" if $opt_v > 2; - return 1; - } else { - print "<- unicode_file()\n" if $opt_v > 2; - return 0; - } - -} # 1}}} -sub unicode_to_ascii { # {{{1 - my $string = shift @_; - - # A trivial attempt to convert UTF-16 little or big endian - # files into ASCII. These files exhibit the following byte - # sequence: - # byte 1: 255 - # byte 2: 254 - # byte 3: ord of ASCII character - # byte 4: 0 - # byte 3+i: ord of ASCII character - # byte 4+i: 0 - # or - # byte 1: 255 - # byte 2: 254 - # byte 3: 0 - # byte 4: ord of ASCII character - # byte 3+i: 0 - # byte 4+i: ord of ASCII character - - my $length = length $string; -#print "length=$length\n"; - return '' if $length <= 3; - my @unicode = split(//, $string); - - # check the first 100 characters for big or little endian UTF-16 encoding - my $max_peek = $length < 200 ? $length : 200; - my @view_1 = (); - for (my $i = 2; $i < $max_peek; $i += 2) { push @view_1, $unicode[$i] } - my @view_2 = (); - for (my $i = 3; $i < $max_peek; $i += 2) { push @view_2, $unicode[$i] } - - my $points_1 = 0; - foreach my $C (@view_1) { - ++$points_1 if (32 <= ord($C) and ord($C) <= 127) or ord($C) == 13 - or ord($C) == 10 - or ord($C) == 9; - } - - my $points_2 = 0; - foreach my $C (@view_2) { - ++$points_2 if (32 <= ord($C) and ord($C) <= 127) or ord($C) == 13 - or ord($C) == 10 - or ord($C) == 9; - } -#print "points 1: $points_1\n"; -#print "points 2: $points_2\n"; - - my $offset = undef; - if ($points_1 > 90) { $offset = 2; } - elsif ($points_2 > 90) { $offset = 3; } - else { return '' } # neither big or little endian UTF-16 - - my @ascii = (); - for (my $i = $offset; $i < $length; $i += 2) { push @ascii, $unicode[$i]; } - return join("", @ascii); -} # 1}}} -sub uncompress_archive_cmd { # {{{1 - my ($archive_file, ) = @_; - - # Wrap $archive_file in single or double quotes in the system - # commands below to avoid filename chicanery (including - # spaces in the names). - - print "-> uncompress_archive_cmd($archive_file)\n" if $opt_v > 2; - my $extract_cmd = ""; - my $missing = ""; - if ($opt_extract_with) { - ( $extract_cmd = $opt_extract_with ) =~ s/>FILE -"; - } elsif (($archive_file =~ /\.tar\.(gz|Z)$/ or - $archive_file =~ /\.tgz$/ ) and !$ON_WINDOWS) { - if (external_utility_exists("gzip --version")) { - if (external_utility_exists("tar --version")) { - $extract_cmd = "gzip -dc '$archive_file' | tar xf -"; - } else { - $missing = "tar"; - } - } else { - $missing = "gzip"; - } - } elsif ($archive_file =~ /\.tar\.bz2$/ and !$ON_WINDOWS) { - if (external_utility_exists("bzip2 --help")) { - if (external_utility_exists("tar --version")) { - $extract_cmd = "bzip2 -dc '$archive_file' | tar xf -"; - } else { - $missing = "tar"; - } - } else { - $missing = "bzip2"; - } - } elsif ($archive_file =~ /\.tar\.xz$/ and !$ON_WINDOWS) { - if (external_utility_exists("unxz --version")) { - if (external_utility_exists("tar --version")) { - $extract_cmd = "unxz -dc '$archive_file' | tar xf -"; - } else { - $missing = "tar"; - } - } else { - $missing = "bzip2"; - } - } elsif ($archive_file =~ /\.tar$/ and !$ON_WINDOWS) { - $extract_cmd = "tar xf '$archive_file'"; - } elsif ($archive_file =~ /\.src\.rpm$/i and !$ON_WINDOWS) { - if (external_utility_exists("cpio --version")) { - if (external_utility_exists("rpm2cpio")) { - $extract_cmd = "rpm2cpio '$archive_file' | cpio -i"; - } else { - $missing = "rpm2cpio"; - } - } else { - $missing = "bzip2"; - } - } elsif ($archive_file =~ /\.zip$/i and !$ON_WINDOWS) { - if (external_utility_exists("unzip")) { - $extract_cmd = "unzip -qq -d . '$archive_file'"; - } else { - $missing = "unzip"; - } - } elsif ($archive_file =~ /\.deb$/i and !$ON_WINDOWS) { - # only useful if the .deb contains source code--most - # .deb files just have compiled executables - if (external_utility_exists("dpkg-deb")) { - $extract_cmd = "dpkg-deb -x '$archive_file' ."; - } else { - $missing = "dpkg-deb"; - } - } elsif ($ON_WINDOWS and $archive_file =~ /\.zip$/i) { - # zip on Windows, guess default Winzip install location - $extract_cmd = ""; - my $WinZip = '"C:\\Program Files\\WinZip\\WinZip32.exe"'; - if (external_utility_exists($WinZip)) { - $extract_cmd = "$WinZip -e -o \"$archive_file\" ."; -#print "trace 5 extract_cmd=[$extract_cmd]\n"; - } else { -#print "trace 6\n"; - $missing = $WinZip; - } - } - print "<- uncompress_archive_cmd\n" if $opt_v > 2; - if ($missing) { - die "Unable to expand $archive_file because external\n", - "utility '$missing' is not available.\n", - "Another possibility is to use the --extract-with option.\n"; - } else { - return $extract_cmd; - } -} -# 1}}} -sub read_list_file { # {{{1 - my ($file, ) = @_; - - print "-> read_list_file($file)\n" if $opt_v > 2; - my $IN = new IO::File $file, "r"; - if (!defined $IN) { - warn "Unable to read $file; ignoring.\n"; - return (); - } - my @entry = (); - while (<$IN>) { - next if /^\s*$/ or /^\s*#/; # skip empty or commented lines - s/\cM$//; # DOS to Unix - chomp; - push @entry, $_; - } - $IN->close; - - print "<- read_list_file\n" if $opt_v > 2; - return @entry; -} -# 1}}} -sub external_utility_exists { # {{{1 - my $exe = shift @_; - - my $success = 0; - if ($ON_WINDOWS) { - $success = 1 unless system $exe . ' > nul'; - } else { - $success = 1 unless system $exe . ' >/dev/null 2>&1'; - if (!$success) { - $success = 1 unless system "which" . " $exe" . ' >/dev/null 2>&1'; - } - } - - return $success; -} # 1}}} -sub write_xsl_file { # {{{1 - my $OUT = new IO::File $CLOC_XSL, "w"; - if (!defined $OUT) { - warn "Unable to write $CLOC_XSL $!\n"; - return; - } - my $XSL = # {{{2 -' - - - - - - - CLOC Results - - - -

    -'; -# 2}}} - - if ($opt_by_file) { - $XSL .= #
    {{{2 -' - - - - - - - -'; - $XSL .= -' - -' if $opt_3; - $XSL .= -' - - - - - - - - - -'; - $XSL .= -' - -' if $opt_3; - $XSL .= -' - - - - - - - -'; - $XSL .= -' - -' if $opt_3; - $XSL .= -' - -
    FileBlankCommentCodeLanguage3rd Generation EquivalentScale
    Total
    -
    -'; -# 2}}} - } - - if (!$opt_by_file or $opt_by_file_by_lang) { - $XSL .= #
    {{{2 -' - - - - - - - -'; - $XSL .= -' - -' if $opt_3; - $XSL .= -' - - - - - - - - - -'; - $XSL .= -' - -' if $opt_3; - $XSL .= -' - - - - - - - -'; - $XSL .= -' - -' if $opt_3; - $XSL .= -' - -
    LanguageFilesBlankCommentCodeScale3rd Generation Equivalent
    Total
    -'; -# 2}}} - } - - $XSL.= <<'EO_XSL'; # {{{2 - - -     -     - -EO_XSL -# 2}}} - - my $XSL_DIFF = <<'EO_DIFF_XSL'; # {{{2 - - - - - - - - CLOC Results - - - -

    -EO_DIFF_XSL -# 2}}} - - if ($opt_by_file) { - $XSL_DIFF.= <<'EO_DIFF_XSL'; # {{{2 - - - - - - - - - - - - - - - - - - - - - -
    Same
    FileBlankCommentCode
    - - - - - - - - - - - - - - - - - - - - - - -
    Modified
    FileBlankCommentCode
    - - - - - - - - - - - - - - - - - - - - - - -
    Added
    FileBlankCommentCode
    - - - - - - - - - - - - - - - - - - - - - - -
    Removed
    FileBlankCommentCode
    -EO_DIFF_XSL -# 2}}} - } - - if (!$opt_by_file or $opt_by_file_by_lang) { - $XSL_DIFF.= <<'EO_DIFF_XSL'; # {{{2 - - - - - - - - - - - - - - - - - - - - - - - -
    Same
    LanguageFilesBlankCommentCode
    - - - - - - - - - - - - - - - - - - - - - - - - -
    Modified
    LanguageFilesBlankCommentCode
    - - - - - - - - - - - - - - - - - - - - - - - - -
    Added
    LanguageFilesBlankCommentCode
    - - - - - - - - - - - - - - - - - - - - - - - - -
    Removed
    LanguageFilesBlankCommentCode
    -EO_DIFF_XSL -# 2}}} - - } - - $XSL_DIFF.= <<'EO_DIFF_XSL'; # {{{2 - - -     -     -EO_DIFF_XSL -# 2}}} - if ($opt_diff) { - print $OUT $XSL_DIFF; - } else { - print $OUT $XSL; - } - $OUT->close(); -} # 1}}} -sub normalize_file_names { # {{{1 - my (@files, ) = @_; - - # Returns a hash of file names reduced to a canonical form - # (fully qualified file names, all path separators changed to /, - # Windows file names lowercased). Hash values are the original - # file name. - - my %normalized = (); - foreach my $F (@files) { - my $F_norm = $F; - if ($ON_WINDOWS) { - $F_norm = lc $F_norm; # for case insensitive file name comparisons - $F_norm =~ s{\\}{/}g; # Windows directory separators to Unix - $F_norm =~ s{^\./}{}g; # remove leading ./ - if (($F_norm !~ m{^/}) and ($F_norm !~ m{^\w:/})) { - # looks like a relative path; prefix with cwd - $F_norm = lc "$cwd/$F_norm"; - } - } else { - $F_norm =~ s{^\./}{}g; # remove leading ./ - if ($F_norm !~ m{^/}) { - # looks like a relative path; prefix with cwd - $F_norm = lc "$cwd/$F_norm"; - } - } - # Remove trailing / so it does not interfere with further regex code - # that does not expect it - $F_norm =~ s{/+$}{}; - $normalized{ $F_norm } = $F; - } - return %normalized; -} # 1}}} -sub combine_diffs { # {{{1 - # subroutine by Andy (awalshe@sf.net) - # https://sourceforge.net/tracker/?func=detail&aid=3261017&group_id=174787&atid=870625 - my ($ra_files) = @_; - - my $res = "$URL v $VERSION\n"; - my $dl = '-'; - my $width = 79; - # columns are in this order - my @cols = ('files', 'blank', 'comment', 'code'); - my %HoH = (); - - foreach my $file (@{$ra_files}) { - my $IN = new IO::File $file, "r"; - if (!defined $IN) { - warn "Unable to read $file; ignoring.\n"; - next; - } - - my $sec; - while (<$IN>) { - chomp; - s/\cM$//; - next if /^(http|Language|-----)/; - if (/^[A-Za-z0-9]+/) { # section title - $sec = $_; - chomp($sec); - $HoH{$sec} = () if ! exists $HoH{$sec}; - next; - } - - if (/^\s(same|modified|added|removed)/) { # calculated totals row - my @ar = grep { $_ ne '' } split(/ /, $_); - chomp(@ar); - my $ttl = shift @ar; - my $i = 0; - foreach(@ar) { - my $t = "${ttl}${dl}${cols[$i]}"; - $HoH{$sec}{$t} = 0 if ! exists $HoH{$sec}{$t}; - $HoH{$sec}{$t} += $_; - $i++; - } - } - } - $IN->close; - } - - # rows are in this order - my @rows = ('same', 'modified', 'added', 'removed'); - - $res .= sprintf("%s\n", "-" x $width); - $res .= sprintf("%-19s %14s %14s %14s %14s\n", 'Language', - $cols[0], $cols[1], $cols[2], $cols[3]); - $res .= sprintf("%s\n", "-" x $width); - - for my $sec ( keys %HoH ) { - next if $sec =~ /SUM:/; - $res .= "$sec\n"; - foreach (@rows) { - $res .= sprintf(" %-18s %14s %14s %14s %14s\n", - $_, $HoH{$sec}{"${_}${dl}${cols[0]}"}, - $HoH{$sec}{"${_}${dl}${cols[1]}"}, - $HoH{$sec}{"${_}${dl}${cols[2]}"}, - $HoH{$sec}{"${_}${dl}${cols[3]}"}); - } - } - $res .= sprintf("%s\n", "-" x $width); - my $sec = 'SUM:'; - $res .= "$sec\n"; - foreach (@rows) { - $res .= sprintf(" %-18s %14s %14s %14s %14s\n", - $_, $HoH{$sec}{"${_}${dl}${cols[0]}"}, - $HoH{$sec}{"${_}${dl}${cols[1]}"}, - $HoH{$sec}{"${_}${dl}${cols[2]}"}, - $HoH{$sec}{"${_}${dl}${cols[3]}"}); - } - $res .= sprintf("%s\n", "-" x $width); - - return $res; -} # 1}}} -sub get_time { # {{{1 - if ($HAVE_Time_HiRes) { - return Time::HiRes::time(); - } else { - return time(); - } -} # 1}}} -sub really_is_D { # {{{1 - # Ref bug 131, files ending with .d could be init.d scripts - # instead of D language source files. - my ($file , # in - $rh_Err , # in hash of error codes - $raa_errors , # out - ) = @_; - print "-> really_is_D($file)\n" if $opt_v > 2; - my $possible_script = peek_at_first_line($file, $rh_Err, $raa_errors); - - print "<- really_is_D($file)\n" if $opt_v > 2; - return $possible_script; # null string if D, otherwise a language -} # 1}}} -# subroutines copied from SLOCCount -my %lex_files = (); # really_is_lex() -my %expect_files = (); # really_is_expect() -my %php_files = (); # really_is_php() -sub really_is_lex { # {{{1 -# Given filename, returns TRUE if its contents really is lex. -# lex file must have "%%", "%{", and "%}". -# In theory, a lex file doesn't need "%{" and "%}", but in practice -# they all have them, and requiring them avoid mislabeling a -# non-lexfile as a lex file. - - my $filename = shift; - chomp($filename); - - my $is_lex = 0; # Value to determine. - my $percent_percent = 0; - my $percent_opencurly = 0; - my $percent_closecurly = 0; - - # Return cached result, if available: - if ($lex_files{$filename}) { return $lex_files{$filename};} - - open(LEX_FILE, "<$filename") || - die "Can't open $filename to determine if it's lex.\n"; - while() { - $percent_percent++ if (m/^\s*\%\%/); - $percent_opencurly++ if (m/^\s*\%\{/); - $percent_closecurly++ if (m/^\s*\%\}/); - } - close(LEX_FILE); - - if ($percent_percent && $percent_opencurly && $percent_closecurly) - {$is_lex = 1;} - - $lex_files{$filename} = $is_lex; # Store result in cache. - - return $is_lex; -} # 1}}} -sub really_is_expect { # {{{1 -# Given filename, returns TRUE if its contents really are Expect. -# Many "exp" files (such as in Apache and Mesa) are just "export" data, -# summarizing something else # (e.g., its interface). -# Sometimes (like in RPM) it's just misc. data. -# Thus, we need to look at the file to determine -# if it's really an "expect" file. - - my $filename = shift; - chomp($filename); - -# The heuristic is as follows: it's Expect _IF_ it: -# 1. has "load_lib" command and either "#" comments or {}. -# 2. {, }, and one of: proc, if, [...], expect - - my $is_expect = 0; # Value to determine. - - my $begin_brace = 0; # Lines that begin with curly braces. - my $end_brace = 0; # Lines that begin with curly braces. - my $load_lib = 0; # Lines with the Load_lib command. - my $found_proc = 0; - my $found_if = 0; - my $found_brackets = 0; - my $found_expect = 0; - my $found_pound = 0; - - # Return cached result, if available: - if ($expect_files{$filename}) { return expect_files{$filename};} - - open(EXPECT_FILE, "<$filename") || - die "Can't open $filename to determine if it's expect.\n"; - while() { - - if (m/#/) {$found_pound++; s/#.*//;} - if (m/^\s*\{/) { $begin_brace++;} - if (m/\{\s*$/) { $begin_brace++;} - if (m/^\s*\}/) { $end_brace++;} - if (m/\};?\s*$/) { $end_brace++;} - if (m/^\s*load_lib\s+\S/) { $load_lib++;} - if (m/^\s*proc\s/) { $found_proc++;} - if (m/^\s*if\s/) { $found_if++;} - if (m/\[.*\]/) { $found_brackets++;} - if (m/^\s*expect\s/) { $found_expect++;} - } - close(EXPECT_FILE); - - if ($load_lib && ($found_pound || ($begin_brace && $end_brace))) - {$is_expect = 1;} - if ( $begin_brace && $end_brace && - ($found_proc || $found_if || $found_brackets || $found_expect)) - {$is_expect = 1;} - - $expect_files{$filename} = $is_expect; # Store result in cache. - - return $is_expect; -} # 1}}} -sub really_is_pascal { # {{{1 -# Given filename, returns TRUE if its contents really are Pascal. - -# This isn't as obvious as it seems. -# Many ".p" files are Perl files -# (such as /usr/src/redhat/BUILD/ispell-3.1/dicts/czech/glob.p), -# others are C extractions -# (such as /usr/src/redhat/BUILD/linux/include/linux/umsdos_fs.p -# and some files in linuxconf). -# However, test files in "p2c" really are Pascal, for example. - -# Note that /usr/src/redhat/BUILD/ucd-snmp-4.1.1/ov/bitmaps/UCD.20.p -# is actually C code. The heuristics determine that they're not Pascal, -# but because it ends in ".p" it's not counted as C code either. -# I believe this is actually correct behavior, because frankly it -# looks like it's automatically generated (it's a bitmap expressed as code). -# Rather than guess otherwise, we don't include it in a list of -# source files. Let's face it, someone who creates C files ending in ".p" -# and expects them to be counted by default as C files in SLOCCount needs -# their head examined. I suggest examining their head -# with a sucker rod (see syslogd(8) for more on sucker rods). - -# This heuristic counts as Pascal such files such as: -# /usr/src/redhat/BUILD/teTeX-1.0/texk/web2c/tangleboot.p -# Which is hand-generated. We don't count woven documents now anyway, -# so this is justifiable. - - my $filename = shift; - chomp($filename); - -# The heuristic is as follows: it's Pascal _IF_ it has all of the following -# (ignoring {...} and (*...*) comments): -# 1. "^..program NAME" or "^..unit NAME", -# 2. "procedure", "function", "^..interface", or "^..implementation", -# 3. a "begin", and -# 4. it ends with "end.", -# -# Or it has all of the following: -# 1. "^..module NAME" and -# 2. it ends with "end.". -# -# Or it has all of the following: -# 1. "^..program NAME", -# 2. a "begin", and -# 3. it ends with "end.". -# -# The "end." requirements in particular filter out non-Pascal. -# -# Note (jgb): this does not detect Pascal main files in fpc, like -# fpc-1.0.4/api/test/testterminfo.pas, which does not have "program" in -# it - - my $is_pascal = 0; # Value to determine. - - my $has_program = 0; - my $has_unit = 0; - my $has_module = 0; - my $has_procedure_or_function = 0; - my $found_begin = 0; - my $found_terminating_end = 0; - my $has_begin = 0; - - open(PASCAL_FILE, "<$filename") || - die "Can't open $filename to determine if it's pascal.\n"; - while() { - s/\{.*?\}//g; # Ignore {...} comments on this line; imperfect, but effective. - s/\(\*.*?\*\)//g; # Ignore (*...*) comments on this line; imperfect, but effective. - if (m/\bprogram\s+[A-Za-z]/i) {$has_program=1;} - if (m/\bunit\s+[A-Za-z]/i) {$has_unit=1;} - if (m/\bmodule\s+[A-Za-z]/i) {$has_module=1;} - if (m/\bprocedure\b/i) { $has_procedure_or_function = 1; } - if (m/\bfunction\b/i) { $has_procedure_or_function = 1; } - if (m/^\s*interface\s+/i) { $has_procedure_or_function = 1; } - if (m/^\s*implementation\s+/i) { $has_procedure_or_function = 1; } - if (m/\bbegin\b/i) { $has_begin = 1; } - # Originally I said: - # "This heuristic fails if there are multi-line comments after - # "end."; I haven't seen that in real Pascal programs:" - # But jgb found there are a good quantity of them in Debian, specially in - # fpc (at the end of a lot of files there is a multiline comment - # with the changelog for the file). - # Therefore, assume Pascal if "end." appears anywhere in the file. - if (m/end\.\s*$/i) {$found_terminating_end = 1;} -# elsif (m/\S/) {$found_terminating_end = 0;} - } - close(PASCAL_FILE); - - # Okay, we've examined the entire file looking for clues; - # let's use those clues to determine if it's really Pascal: - - if ( ( ($has_unit || $has_program) && $has_procedure_or_function && - $has_begin && $found_terminating_end ) || - ( $has_module && $found_terminating_end ) || - ( $has_program && $has_begin && $found_terminating_end ) ) - {$is_pascal = 1;} - - return $is_pascal; -} # 1}}} -sub really_is_incpascal { # {{{1 -# Given filename, returns TRUE if its contents really are Pascal. -# For .inc files (mainly seen in fpc) - - my $filename = shift; - chomp($filename); - -# The heuristic is as follows: it is Pascal if any of the following: -# 1. really_is_pascal returns true -# 2. Any usual reserved word is found (program, unit, const, begin...) - - # If the general routine for Pascal files works, we have it - if (really_is_pascal($filename)) { - return 1; - } - - my $is_pascal = 0; # Value to determine. - my $found_begin = 0; - - open(PASCAL_FILE, "<$filename") || - die "Can't open $filename to determine if it's pascal.\n"; - while() { - s/\{.*?\}//g; # Ignore {...} comments on this line; imperfect, but effective. - s/\(\*.*?\*\)//g; # Ignore (*...*) comments on this line; imperfect, but effective. - if (m/\bprogram\s+[A-Za-z]/i) {$is_pascal=1;} - if (m/\bunit\s+[A-Za-z]/i) {$is_pascal=1;} - if (m/\bmodule\s+[A-Za-z]/i) {$is_pascal=1;} - if (m/\bprocedure\b/i) {$is_pascal = 1; } - if (m/\bfunction\b/i) {$is_pascal = 1; } - if (m/^\s*interface\s+/i) {$is_pascal = 1; } - if (m/^\s*implementation\s+/i) {$is_pascal = 1; } - if (m/\bconstant\s+/i) {$is_pascal=1;} - if (m/\bbegin\b/i) { $found_begin = 1; } - if ((m/end\.\s*$/i) && ($found_begin = 1)) {$is_pascal = 1;} - if ($is_pascal) { - last; - } - } - - close(PASCAL_FILE); - return $is_pascal; -} # 1}}} -sub really_is_php { # {{{1 -# Given filename, returns TRUE if its contents really is php. - - my $filename = shift; - chomp($filename); - - my $is_php = 0; # Value to determine. - # Need to find a matching pair of surrounds, with ending after beginning: - my $normal_surround = 0; # - my $script_surround = 0; # ; bit 0 =