Index: sm/trunk-jpl/configs/config-linux64-ad.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-ad.sh	(revision 19678)
+++ 	(revision )
@@ -1,20 +1,0 @@
-#!/bin/sh
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--without-wrappers\
-	--with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install\
-	--without-thermal \
-	--without-control \
-	--without-hydrology \
-	--without-stressbalance \
-	--without-balanced \
-	--without-responses \
-	--without-slope \
-	--without-rifts \
-	--without-steadystate \
-	--without-transient \
-	--without-3d \
-	--without-groundingline \
-	--without-kriging  \
-	--with-adolc-dir=$ISSM_DIR/externalpackages/adolc/install
Index: sm/trunk-jpl/configs/config-linux64-cmake.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-cmake.sh	(revision 19678)
+++ 	(revision )
@@ -1,2 +1,0 @@
-rm $ISSM_DIR/CMakeCache.txt
-cmake -D GSL_DIR=${GSL_DIR} ${ISSM_DIR}
Index: sm/trunk-jpl/configs/config-linux64-larsen-ad.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-larsen-ad.sh	(revision 19678)
+++ 	(revision )
@@ -1,11 +1,0 @@
-#!/bin/sh
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--without-kriging  \
-	--without-kml  \
-	--with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install \
-	--with-adolc-dir=$ISSM_DIR/externalpackages/adolc/install \
-	--with-adolc-version=3 \
-	--with-matlab-dir="$ISSM_DIR/externalpackages/matlab/install" \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
Index: sm/trunk-jpl/configs/config-linux64-larsen-gia.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-larsen-gia.sh	(revision 19678)
+++ 	(revision )
@@ -1,31 +1,0 @@
-#!/bin/sh
-
-#External packages versions:
-#petsc 3.4
-#mpich 3.0
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-matlab-dir=$ISSM_DIR/externalpackages/matlab/install \
- --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-python-dir=$ISSM_DIR/externalpackages/python/install\
- --with-python-numpy-dir=$ISSM_DIR/externalpackages/python/install/lib/python2.7/site-packages/numpy/core/include/numpy\
- --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
- --with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
- --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
- --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich -lmpl " \
- --with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install \
- --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
- --with-shapelib-dir="$ISSM_DIR/externalpackages/shapelib/install" \
- --with-math77-dir="$ISSM_DIR/externalpackages/math77/install" \
- --with-gia="yes"\
- --with-fortran-lib="-L/usr/lib/gcc/x86_64-linux-gnu/4.6/ -lgfortran" \
- --with-graphics-lib="/usr/lib/x86_64-linux-gnu/libX11.so" \
- --with-cxxoptflags="-march=opteron -O2" \
- --with-numthreads=16 \
- --enable-debugging
Index: sm/trunk-jpl/configs/config-linux64-larsen.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-larsen.sh	(revision 19678)
+++ 	(revision )
@@ -1,27 +1,0 @@
-#!/bin/sh
-
-#External packages versions:
-#petsc 3.4
-#mpich 3.0
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-matlab-dir=$ISSM_DIR/externalpackages/matlab/install \
- --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-python-dir=$ISSM_DIR/externalpackages/python/install\
- --with-python-numpy-dir=$ISSM_DIR/externalpackages/python/install/lib/python2.7/site-packages/numpy/core/include/numpy\
- --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
- --with-boost-dir=$ISSM_DIR/externalpackages/boost/install/ \
- --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
- --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich -lmpl " \
- --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
- --with-fortran-lib="-L/usr/lib/gcc/x86_64-linux-gnu/4.6/ -lgfortran" \
- --with-graphics-lib="/usr/lib/x86_64-linux-gnu/libX11.so" \
- --with-cxxoptflags="-march=opteron -O2" \
- --with-numthreads=16 \
- --enable-debugging
Index: sm/trunk-jpl/configs/config-linux64-murdo-nopetsc.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-murdo-nopetsc.sh	(revision 19678)
+++ 	(revision )
@@ -1,16 +1,0 @@
-#!/bin/sh
-./configure \
-	--prefix=$ISSM_DIR\
-	--with-matlab-dir=$MATLAB_DIR \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
-	--with-metis-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
-	--with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich" \
-	--with-graphics-lib="/usr/lib/x86_64-linux-gnu/libX11.so" \
-	--with-cxxoptflags="-mtune=barcelona -ffast-math -O3 -msse4.2 -Wno-write-strings "\
-	--with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install\
-	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-numthreads=18  \
-	--enable-debugging 
Index: sm/trunk-jpl/configs/config-linux64-murdo.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-murdo.sh	(revision 19678)
+++ 	(revision )
@@ -1,24 +1,0 @@
-#!/bin/sh
-
-#petsc 3.2
-#mpich 1.4
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--with-matlab-dir="$ISSM_DIR/externalpackages/matlab/install" \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
-	--with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
-	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
-	--with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich" \
-	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-python-dir=$ISSM_DIR/externalpackages/python/install\
-	--with-python-numpy-dir=$ISSM_DIR/externalpackages/python/install/lib/python2.7/site-packages/numpy/core/include/numpy\
-	--with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
-	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
-	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
-	--with-graphics-lib="/usr/lib/x86_64-linux-gnu/libX11.so" \
-	--with-cxxoptflags="-mtune=barcelona -ffast-math -O3 -msse4.2 -Wno-write-strings "\
-	--with-numthreads=18 \
-	--enable-debugging 
Index: sm/trunk-jpl/configs/config-macosx64-static.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx64-static.sh	(revision 19678)
+++ 	(revision )
@@ -1,19 +1,0 @@
-#!/bin/sh
-
-./configure \
-	--prefix=$ISSM_DIR \
-   --disable-static \
-   --enable-standalone-executables \
-   --enable-standalone-libraries \
-	--with-matlab-dir=$MATLAB_DIR \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
-	--with-metis-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  \
-   --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
-	--with-mpi-libflags=" -L$ISSM_DIR/externalpackages/mpich/install/lib -lmpich -lpmpich" \
-	--with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install \
-   --with-fortran-lib="/usr/local/lib/libgfortran.a" \
-   --enable-debugging \
-	--with-numthreads=4
Index: sm/trunk-jpl/configs/config-win64.sh
===================================================================
--- /issm/trunk-jpl/configs/config-win64.sh	(revision 19678)
+++ 	(revision )
@@ -1,19 +1,0 @@
-#!/bin/sh
-
-# Works on Win8, but should also work on 7.
-./configure --prefix=$ISSM_DIR \
-	--with-vendor=MSVC-Win64  \
-	--disable-static \
-	--enable-standalone-libraries \
-	--with-fortran=no  \
-	--without-Gia \
-	--without-kriging \
-	--with-matlab-dir="$ISSM_DIR/externalpackages/matlab/install" \
-	--with-metis-dir="$ISSM_DIR/externalpackages/metis/install" \
-	--with-triangle-dir="$ISSM_DIR/externalpackages/triangle/install" \
-	--with-petsc-dir="$ISSM_DIR/externalpackages/petsc/install" \
-	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/lib/  \
-	--with-mpi-libdir="$ISSM_DIR/externalpackages/petsc/install/lib" \
-   --with-mpi-libflags="-Wl,libpetsc.lib" \
-	--with-mpi-include="$ISSM_DIR/externalpackages/petsc/install/include/petsc/mpiuni" 
-
Index: sm/trunk-jpl/configs/config-win7-32.sh
===================================================================
--- /issm/trunk-jpl/configs/config-win7-32.sh	(revision 19678)
+++ 	(revision )
@@ -1,14 +1,0 @@
-#!/bin/sh
-
-#get configure.sh to pick up the win7 Visual Studio compiler 
-./configure --prefix=$ISSM_DIR \
-   --disable-static \
-   --with-vendor=intel-win7-32  \
-   --with-matlab-dir=""$ISSM_DIR/externalpackages/matlab/install"" \
-   --with-blas-lapack-dir="$ISSM_DIR/externalpackages/petsc/install" \
-   --with-triangle-dir="$ISSM_DIR/externalpackages/triangle/install" \
-   --with-metis-dir="$ISSM_DIR/externalpackages/metis/install" \
-   --with-petsc-dir="$ISSM_DIR/externalpackages/petsc/install" \
-   --with-mpi-libdir="$ISSM_DIR/externalpackages/petsc/install/lib" \
-   --with-mpi-libflags="-Wl,libpetsc.lib" \
-   --with-mpi-include="$ISSM_DIR/externalpackages/petsc/install/include/mpiuni" 
Index: sm/trunk-jpl/configs/config-win7-64-parallel.sh
===================================================================
--- /issm/trunk-jpl/configs/config-win7-64-parallel.sh	(revision 19678)
+++ 	(revision )
@@ -1,16 +1,0 @@
-#!/bin/sh
-
-#Dos style path needed for the windows sdk 7.1 cl compiler: 
-ISSM_DIR_WIN=`cygpath -m "$ISSM_DIR"`
-
-#get configure.sh to pick up the win7 Visual Studio compiler 
-./configure --prefix=$ISSM_DIR \
-	--with-vendor=intel-win7-64  \
-	--with-matlab-dir="C:/MATLAB/R2012b/"\
-	--with-triangle-dir="$ISSM_DIR_WIN/externalpackages/triangle/install" \
-	--with-metis-dir="$ISSM_DIR_WIN/externalpackages/metis/install" \
-	--with-petsc-dir="$ISSM_DIR_WIN/externalpackages/petsc/install" \
-	--with-blas-lapack-dir="$ISSM_DIR/externalpackages/petsc/install/lib"  \
-	--with-mpi-include="C:/MPICH2/include" \
-	--with-mpi-libflags="-LC:/MPICH2/lib mpi.lib"
-
Index: sm/trunk-jpl/configs/config-win7-64.sh
===================================================================
--- /issm/trunk-jpl/configs/config-win7-64.sh	(revision 19678)
+++ 	(revision )
@@ -1,14 +1,0 @@
-#!/bin/sh
-
-#get configure.sh to pick up the win7 Visual Studio compiler 
-./configure --prefix=$ISSM_DIR \
-   --disable-static \
-	--with-vendor=intel-win7-64  \
-	--with-matlab-dir=""$ISSM_DIR/externalpackages/matlab/install"" \
-	--with-triangle-dir="$ISSM_DIR/externalpackages/triangle/install" \
-	--with-metis-dir="$ISSM_DIR/externalpackages/metis/install" \
-	--with-petsc-dir="$ISSM_DIR/externalpackages/petsc/install" \
-	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/lib/  \
-	--with-mpi-libflags-dir="$ISSM_DIR/externalpackages/petsc/install/lib" \
-   --with-mpi-libflagss="-Wl,libpetsc.lib" \
-	--with-mpi-include-dir="$ISSM_DIR/externalpackages/petsc/install/include/mpiuni"