Index: ../trunk-jpl/src/ad/validation/Validation/Makefile
===================================================================
--- ../trunk-jpl/src/ad/validation/Validation/Makefile	(revision 19027)
+++ ../trunk-jpl/src/ad/validation/Validation/Makefile	(revision 19028)
@@ -1,2 +0,0 @@
-clean:
-	rm validation.lock validation.outlog validationRose.outlog
Index: ../trunk-jpl/src/ad/validation/Validation/validation.queue
===================================================================
--- ../trunk-jpl/src/ad/validation/Validation/validation.queue	(revision 19027)
+++ ../trunk-jpl/src/ad/validation/Validation/validation.queue	(revision 19028)
@@ -1,4 +0,0 @@
-#!/bin/sh
-#mpiexec -np 3 $ISSM_TIER/bin/issm.exe PrognosticSolution ./ validation > validation.outlog
-echo "\n Running issm.exe"
-mpiexec -np 3 $ISSM_TIER/src/ad/issm.exe PrognosticSolution ./ validation > validation.outlog 
Index: ../trunk-jpl/src/ad/validation/Validation/Archive.mat
===================================================================
Cannot display: file marked as a binary type.
svn:mime-type = application/octet-stream
Index: ../trunk-jpl/src/ad/validation/Validation/validation.bin
===================================================================
Cannot display: file marked as a binary type.
svn:mime-type = application/octet-stream
Index: ../trunk-jpl/src/ad/validation/Validation/validation.m
===================================================================
--- ../trunk-jpl/src/ad/validation/Validation/validation.m	(revision 19027)
+++ ../trunk-jpl/src/ad/validation/Validation/validation.m	(revision 19028)
@@ -1,31 +0,0 @@
-tolerance=1e-13;
-
-md=model;
-md.cluster=generic('name',oshostname(),'np',3);
-md.miscellaneous.name='validation';
-
-%run all scripts
-for i=1:2,
-
-	%run queuing script
-	if i==1,
-		disp('Checking src/ad/issm.exe ...');
-		!source validation.queue
-	elseif i==2,
-		disp('Checking src/ad/issmROSE.exe ...');
-		!source validationROSE.queue
-	end
-
-	%load solution and remove outbin
-	md=loadresultsfromdisk(md,'validation.outbin');
-	!rm validation.outbin
-
-	s=load('Archive.mat'); h0=s.thickness;
-	h=md.results.MasstransportSolution.Thickness;
-	error_diff=full(max(abs(h-h0))/(max(abs(h0))+eps));
-	if (error_diff>tolerance);
-		disp(sprintf(['\nERROR   difference: %-7.2g > %7.2g \n'],error_diff,tolerance));
-	else
-		disp(sprintf(['\nSUCCESS difference: %-7.2g < %7.2g \n'],error_diff,tolerance));
-	end
-end
Index: ../trunk-jpl/src/ad/validation/Validation/validationROSE.queue
===================================================================
--- ../trunk-jpl/src/ad/validation/Validation/validationROSE.queue	(revision 19027)
+++ ../trunk-jpl/src/ad/validation/Validation/validationROSE.queue	(revision 19028)
@@ -1,4 +0,0 @@
-#!/bin/sh
-#mpiexec -np 3 $ISSM_TIER/bin/issm.exe PrognosticSolution ./ validation > validation.outlog
-echo "\n Running issmRose.exe"
-mpiexec -np 3 $ISSM_TIER/src/ad/issmRose.exe PrognosticSolution ./ validation > validationRose.outlog 
Index: ../trunk-jpl/src/ad/validation/Validation/validation.petsc
===================================================================
--- ../trunk-jpl/src/ad/validation/Validation/validation.petsc	(revision 19027)
+++ ../trunk-jpl/src/ad/validation/Validation/validation.petsc	(revision 19028)
@@ -1,17 +0,0 @@
-%Petsc options file: validation.petsc written from Matlab solver array
-
-+NoneAnalysis
--mat_type mpiaij
--ksp_type preonly
--pc_type lu
--pc_factor_mat_solver_package mumps
--mat_mumps_icntl_14 120
--pc_factor_shift_positive_definite true
-
-+DiagnosticVertAnalysis
--mat_type mpiaij
--ksp_type preonly
--pc_type lu
--pc_factor_mat_solver_package mumps
--mat_mumps_icntl_14 120
--pc_factor_shift_positive_definite true
Index: ../trunk-jpl/src/ad/validation/Update/SquareShelfConstrained.data
===================================================================
Cannot display: file marked as a binary type.
svn:mime-type = application/octet-stream
Index: ../trunk-jpl/src/ad/validation/Update/Square.exp
===================================================================
--- ../trunk-jpl/src/ad/validation/Update/Square.exp	(revision 19027)
+++ ../trunk-jpl/src/ad/validation/Update/Square.exp	(revision 19028)
@@ -1,10 +0,0 @@
-## Name:domainoutline
-## Icon:0
-# Points Count  Value
-5 1.
-# X pos Y pos
-0 0
-1000000 0
-1000000 1000000
-0 1000000
-0 0
Index: ../trunk-jpl/src/ad/validation/Update/SquareShelfConstrained.par
===================================================================
--- ../trunk-jpl/src/ad/validation/Update/SquareShelfConstrained.par	(revision 19027)
+++ ../trunk-jpl/src/ad/validation/Update/SquareShelfConstrained.par	(revision 19028)
@@ -1,51 +0,0 @@
-%Start defining model parameters here
-
-%Geometry
-hmin=300;
-hmax=1000;
-ymin=min(md.mesh.y);
-ymax=max(md.mesh.y);
-md.geometry.thickness=hmax+(hmin-hmax)*(md.mesh.y-ymin)/(ymax-ymin);
-md.geometry.bed=-md.materials.rho_ice/md.materials.rho_water*md.geometry.thickness;
-md.geometry.surface=md.geometry.bed+md.geometry.thickness;
-
-%Initial velocity 
-load('SquareShelfConstrained.data','-mat');
-md.initialization.vx=InterpFromMeshToMesh2d(index,x,y,vx,md.mesh.x,md.mesh.y);
-md.initialization.vy=InterpFromMeshToMesh2d(index,x,y,vy,md.mesh.x,md.mesh.y);
-clear vx vy x y index;
-md.initialization.vz=zeros(md.mesh.numberofvertices,1);
-md.initialization.pressure=zeros(md.mesh.numberofvertices,1);
-
-%Materials
-md.initialization.temperature=(273-20)*ones(md.mesh.numberofvertices,1);
-md.materials.rheology_B=paterson(md.initialization.temperature);
-md.materials.rheology_n=3*ones(md.mesh.numberofelements,1);
-
-%Surface mass balance and basal melting
-md.surfaceforcings.mass_balance=10*ones(md.mesh.numberofvertices,1);
-md.basalforcings.melting_rate=5*ones(md.mesh.numberofvertices,1);
-
-%Friction
-pos=find(md.mask.elementonfloatingice);
-md.friction.coefficient=20*ones(md.mesh.numberofvertices,1);
-md.friction.coefficient(md.mesh.elements(pos,:))=0;
-md.friction.p=ones(md.mesh.numberofelements,1);
-md.friction.q=ones(md.mesh.numberofelements,1);
-
-%Numerical parameters
-md.stressbalance.viscosity_overshoot=0.0;
-md.prognostic.stabilization=1;
-md.thermal.stabilization=1;
-md.verbose=verbose(0);
-md.settings.waitonlock=30;
-md.stressbalance.restol=0.05;
-md.stressbalance.reltol=0.05;
-md.steadystate.reltol=0.05;
-md.stressbalance.abstol=NaN;
-md.timestepping.time_step=1;
-md.timestepping.final_time=3;
-
-%Deal with boundary conditions:
-md=SetIceShelfBC(md);
-md.miscellaneous.name='validation';
Index: ../trunk-jpl/src/ad/validation/Update/update.m
===================================================================
--- ../trunk-jpl/src/ad/validation/Update/update.m	(revision 19027)
+++ ../trunk-jpl/src/ad/validation/Update/update.m	(revision 19028)
@@ -1,17 +0,0 @@
-tolerance=1e-13;
-
-md=setmesh(model,'Square.exp',150000);
-md=setmask(md,'all','');
-md=parameterize(md,'SquareShelfConstrained.par');
-md=setflowequation(md,'SSA','all');
-md.cluster=generic('name',oshostname(),'np',3);
-md.cluster.executionpath=[issmtier() '/src/ad/validation/Validation/'];
-
-md.autodiff.isautodiff=true;
-md.autodiff.forward=true;
-md.verbose=verbose('solution',true);
-
-md=solve(md,MasstransportSolutionEnum);
-
-thickness=md.results.MasstransportSolution.Thickness;
-save ../Validation/Archive.mat thickness;
Index: ../trunk-jpl/src/ad/validation.sh
===================================================================
--- ../trunk-jpl/src/ad/validation.sh	(revision 19027)
+++ ../trunk-jpl/src/ad/validation.sh	(revision 19028)
@@ -1,9 +0,0 @@
-#!/bin/bash
-#This is a quick validation test for new ADIC2 capability development
-#Just run it, it will fire up matlab, which will create a binary file
-#launch issm.exe using the binary file, post-process the output binary 
-#and compare it against an archive result.
-
-cd validation/Validation
-matlab -nojvm -r "addpath $ISSM_TIER/; startup;" < validation.m
-cd ..
