Index: /issm/oecreview/Archive/17984-18295/Date.tex
===================================================================
--- /issm/oecreview/Archive/17984-18295/Date.tex (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/Date.tex (revision 18296)
@@ -0,0 +1,1 @@
+Jul-30-2014
Index: /issm/oecreview/Archive/17984-18295/ISSM-17984-17985.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-17984-17985.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-17984-17985.diff (revision 18296)
@@ -0,0 +1,12 @@
+Index: ../trunk-jpl/src/m/enum/EnumDefinitions.py
+===================================================================
+--- ../trunk-jpl/src/m/enum/EnumDefinitions.py (revision 17984)
++++ ../trunk-jpl/src/m/enum/EnumDefinitions.py (revision 17985)
+@@ -282,6 +282,7 @@
+ def TimesteppingCflCoefficientEnum(): return StringToEnum("TimesteppingCflCoefficient")[0]
+ def TimesteppingTimeAdaptEnum(): return StringToEnum("TimesteppingTimeAdapt")[0]
+ def TimesteppingTimeStepEnum(): return StringToEnum("TimesteppingTimeStep")[0]
++def TimesteppingInterpForcingsEnum(): return StringToEnum("TimesteppingInterpForcings")[0]
+ def TransientIsstressbalanceEnum(): return StringToEnum("TransientIsstressbalance")[0]
+ def TransientIsgroundinglineEnum(): return StringToEnum("TransientIsgroundingline")[0]
+ def TransientIsmasstransportEnum(): return StringToEnum("TransientIsmasstransport")[0]
Index: /issm/oecreview/Archive/17984-18295/ISSM-17990-17991.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-17990-17991.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-17990-17991.diff (revision 18296)
@@ -0,0 +1,94 @@
+Index: ../trunk-jpl/src/m/classes/model.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/model.py (revision 17990)
++++ ../trunk-jpl/src/m/classes/model.py (revision 17991)
+@@ -656,10 +656,11 @@
+ #connectivity
+ md.mesh.elementconnectivity=numpy.tile(md.mesh.elementconnectivity,(numlayers-1,1))
+ md.mesh.elementconnectivity[numpy.nonzero(md.mesh.elementconnectivity==0)]=-sys.maxint-1
+- for i in xrange(1,numlayers-1):
+- md.mesh.elementconnectivity[i*md.mesh.numberofelements2d:(i+1)*md.mesh.numberofelements2d,:] \
+- =md.mesh.elementconnectivity[i*md.mesh.numberofelements2d:(i+1)*md.mesh.numberofelements2d,:]+md.mesh.numberofelements2d
+- md.mesh.elementconnectivity[numpy.nonzero(md.mesh.elementconnectivity<0)]=0
++ if not numpy.isnan(md.mesh.lementconnectivity).all():
++ for i in xrange(1,numlayers-1):
++ md.mesh.elementconnectivity[i*md.mesh.numberofelements2d:(i+1)*md.mesh.numberofelements2d,:] \
++ =md.mesh.elementconnectivity[i*md.mesh.numberofelements2d:(i+1)*md.mesh.numberofelements2d,:]+md.mesh.numberofelements2d
++ md.mesh.elementconnectivity[numpy.nonzero(md.mesh.elementconnectivity<0)]=0
+
+ #materials
+ md.materials.rheology_B=project3d(md,'vector',md.materials.rheology_B,'type','node')
+@@ -763,7 +764,7 @@
+ md.stressbalance.referential=project2d(md,md.stressbalance.referential,md.mesh.numberoflayers)
+ md.stressbalance.loadingforce=project2d(md,md.stressbalance.loadingforce,md.mesh.numberoflayers)
+ md.masstransport.spcthickness=project2d(md,md.masstransport.spcthickness,md.mesh.numberoflayers)
+- md.damage.spcdamage=project2d(md,md.damage.spcdamage,md.mesh.numberoflayers-1)
++ if not numpy.isnan(md.damage.spcdamage).all(): md.damage.spcdamage=project2d(md,md.damage.spcdamage,md.mesh.numberoflayers-1)
+ md.thermal.spctemperature=project2d(md,md.thermal.spctemperature,md.mesh.numberoflayers-1)
+
+ #materials
+@@ -804,8 +805,8 @@
+ mesh.numberofvertices=md.mesh.numberofvertices2d
+ mesh.numberofelements=md.mesh.numberofelements2d
+ mesh.elements=md.mesh.elements2d
+- mesh.vertexonboundary=project2d(md,md.mesh.vertexonboundary,1)
+- mesh.elementconnectivity=project2d(md,md.mesh.elementconnectivity,1)
++ if not numpy.isnan(md.mesh.vertexonboundary).all(): mesh.vertexonboundary=project2d(md,md.mesh.vertexonboundary,1)
++ if not numpy.isnan(md.mesh.elementconnectivity).all(): mesh.elementconnectivity=project2d(md,md.mesh.elementconnectivity,1)
+ md.mesh=mesh
+
+ return md
+Index: ../trunk-jpl/src/m/classes/model.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/model.m (revision 17990)
++++ ../trunk-jpl/src/m/classes/model.m (revision 17991)
+@@ -207,7 +207,7 @@
+ md.stressbalance.referential=project2d(md,md.stressbalance.referential,md.mesh.numberoflayers);
+ md.stressbalance.loadingforce=project2d(md,md.stressbalance.loadingforce,md.mesh.numberoflayers);
+ md.masstransport.spcthickness=project2d(md,md.masstransport.spcthickness,md.mesh.numberoflayers);
+- md.damage.spcdamage=project2d(md,md.damage.spcdamage,md.mesh.numberoflayers)
++ if ~isnan(md.damage.spcdamage), md.damage.spcdamage=project2d(md,md.damage.spcdamage,md.mesh.numberoflayers); end
+ md.thermal.spctemperature=project2d(md,md.thermal.spctemperature,md.mesh.numberoflayers);
+
+ %materials
+@@ -235,6 +235,7 @@
+ md.geometry.thickness=project2d(md,md.geometry.thickness,1);
+ md.geometry.base=project2d(md,md.geometry.base,1);
+ md.geometry.bed=project2d(md,md.geometry.bed,1);
++
+ md.mask.groundedice_levelset=project2d(md,md.mask.groundedice_levelset,1);
+ md.mask.ice_levelset=project2d(md,md.mask.ice_levelset,1);
+
+@@ -249,8 +250,8 @@
+ mesh.numberofvertices=md.mesh.numberofvertices2d;
+ mesh.numberofelements=md.mesh.numberofelements2d;
+ mesh.elements=md.mesh.elements2d;
+- mesh.vertexonboundary=project2d(md,md.mesh.vertexonboundary,1);
+- mesh.elementconnectivity=project2d(md,md.mesh.elementconnectivity,1);
++ if ~isnan(md.mesh.vertexonboundary), mesh.vertexonboundary=project2d(md,md.mesh.vertexonboundary,1); end
++ if ~isnan(md.mesh.elementconnectivity), mesh.elementconnectivity=project2d(md,md.mesh.elementconnectivity,1); end
+ md.mesh=mesh;
+
+ end % }}}
+@@ -759,13 +760,15 @@
+ end
+
+ %connectivity
+- md.mesh.elementconnectivity=repmat(md.mesh.elementconnectivity,numlayers-1,1);
+- md.mesh.elementconnectivity(find(md.mesh.elementconnectivity==0))=NaN;
+- for i=2:numlayers-1,
+- md.mesh.elementconnectivity((i-1)*md.mesh.numberofelements2d+1:(i)*md.mesh.numberofelements2d,:)...
+- =md.mesh.elementconnectivity((i-1)*md.mesh.numberofelements2d+1:(i)*md.mesh.numberofelements2d,:)+md.mesh.numberofelements2d;
++ if ~isnan(md.mesh.elementconnectivity)
++ md.mesh.elementconnectivity=repmat(md.mesh.elementconnectivity,numlayers-1,1);
++ md.mesh.elementconnectivity(find(md.mesh.elementconnectivity==0))=NaN;
++ for i=2:numlayers-1,
++ md.mesh.elementconnectivity((i-1)*md.mesh.numberofelements2d+1:(i)*md.mesh.numberofelements2d,:)...
++ =md.mesh.elementconnectivity((i-1)*md.mesh.numberofelements2d+1:(i)*md.mesh.numberofelements2d,:)+md.mesh.numberofelements2d;
++ end
++ md.mesh.elementconnectivity(find(isnan(md.mesh.elementconnectivity)))=0;
+ end
+- md.mesh.elementconnectivity(find(isnan(md.mesh.elementconnectivity)))=0;
+
+ %materials
+ md.materials.rheology_B=project3d(md,'vector',md.materials.rheology_B,'type','node');
Index: /issm/oecreview/Archive/17984-18295/ISSM-17991-17992.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-17991-17992.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-17991-17992.diff (revision 18296)
@@ -0,0 +1,16 @@
+Index: ../trunk-jpl/src/m/enum/TimesteppingInterpForcingsEnum.m
+===================================================================
+--- ../trunk-jpl/src/m/enum/TimesteppingInterpForcingsEnum.m (revision 0)
++++ ../trunk-jpl/src/m/enum/TimesteppingInterpForcingsEnum.m (revision 17992)
+@@ -0,0 +1,11 @@
++function macro=TimesteppingInterpForcingsEnum()
++%TIMESTEPPINGINTERPFORCINGSENUM - Enum of TimesteppingInterpForcings
++%
++% WARNING: DO NOT MODIFY THIS FILE
++% this file has been automatically generated by src/c/shared/Enum/Synchronize.sh
++% Please read src/c/shared/Enum/README for more information
++%
++% Usage:
++% macro=TimesteppingInterpForcingsEnum()
++
++macro=StringToEnum('TimesteppingInterpForcings');
Index: /issm/oecreview/Archive/17984-18295/ISSM-17992-17993.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-17992-17993.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-17992-17993.diff (revision 18296)
@@ -0,0 +1,13473 @@
+Index: ../trunk-jpl/src/java/build/gui_elements/PathPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/PathPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/PathPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/PathPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/PathPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/IntegerPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/IntegerPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/IntegerPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/IntegerPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/IntegerPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/DecimalPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/DecimalPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/DecimalPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/DecimalPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/DecimalPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/GUIBuildException.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/GUIBuildException.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/GUIBuildException.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/GUIBuildException.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/GUIBuildException.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$1.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$1.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$1.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$1.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$1.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/ControlledPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/ControlledPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/ControlledPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/ControlledPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/ControlledPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/DuplicatorPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/DuplicatorPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/DuplicatorPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/DuplicatorPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/DuplicatorPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/OptionPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/OptionPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/OptionPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/OptionPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/OptionPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/AlternativePanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/AlternativePanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/AlternativePanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/AlternativePanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/AlternativePanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/CombinedPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/CombinedPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/CombinedPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/CombinedPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/CombinedPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/SelectorPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/SelectorPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/SelectorPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/SelectorPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/SelectorPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/ColorCellRenderer.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/ColorCellRenderer.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/ColorCellRenderer.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/ColorCellRenderer.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/ColorCellRenderer.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/CheckBoxPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/CheckBoxPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/CheckBoxPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/CheckBoxPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/CheckBoxPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$Type.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$Type.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$Type.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$Type.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/CombinedPanel$Type.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/TextfieldPanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/TextfieldPanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/TextfieldPanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/TextfieldPanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/TextfieldPanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/gui_elements/FramePanel.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/gui_elements/FramePanel.class
+===================================================================
+--- ../trunk-jpl/src/java/build/gui_elements/FramePanel.class (revision 17992)
++++ ../trunk-jpl/src/java/build/gui_elements/FramePanel.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/gui_elements/FramePanel.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/main/GUIBuilder.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/main/GUIBuilder.class
+===================================================================
+--- ../trunk-jpl/src/java/build/main/GUIBuilder.class (revision 17992)
++++ ../trunk-jpl/src/java/build/main/GUIBuilder.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/main/GUIBuilder.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/main/GUIBuilder$1.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/main/GUIBuilder$1.class
+===================================================================
+--- ../trunk-jpl/src/java/build/main/GUIBuilder$1.class (revision 17992)
++++ ../trunk-jpl/src/java/build/main/GUIBuilder$1.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/main/GUIBuilder$1.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/main/PanelControl.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/main/PanelControl.class
+===================================================================
+--- ../trunk-jpl/src/java/build/main/PanelControl.class (revision 17992)
++++ ../trunk-jpl/src/java/build/main/PanelControl.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/main/PanelControl.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/main/XMLHelper.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/main/XMLHelper.class
+===================================================================
+--- ../trunk-jpl/src/java/build/main/XMLHelper.class (revision 17992)
++++ ../trunk-jpl/src/java/build/main/XMLHelper.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/main/XMLHelper.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/main/GUI.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/main/GUI.class
+===================================================================
+--- ../trunk-jpl/src/java/build/main/GUI.class (revision 17992)
++++ ../trunk-jpl/src/java/build/main/GUI.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/main/GUI.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/main/PanelNode.class
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/main/PanelNode.class
+===================================================================
+--- ../trunk-jpl/src/java/build/main/PanelNode.class (revision 17992)
++++ ../trunk-jpl/src/java/build/main/PanelNode.class (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/main/PanelNode.class
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/document-open-2.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/document-open-2.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/document-open-2.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/document-open-2.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/document-open-2.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/document-preview.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/document-preview.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/document-preview.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/document-preview.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/document-preview.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/document-export-4.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/document-export-4.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/document-export-4.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/document-export-4.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/document-export-4.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/config_schema.xsd
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/config_schema.xsd (revision 0)
++++ ../trunk-jpl/src/java/build/resources/config_schema.xsd (revision 17993)
+@@ -0,0 +1,141 @@
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
+
+Property changes on: ../trunk-jpl/src/java/build/resources/config_schema.xsd
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/default_config.xml
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/default_config.xml (revision 0)
++++ ../trunk-jpl/src/java/build/resources/default_config.xml (revision 17993)
+@@ -0,0 +1,1284 @@
++
++
++
++
++
++
++
++ select a mesh dimension 0(default) or 3
++
++
++
++
++
++ number of elements
++
++
++
++ number of verticies
++
++
++
++ vertex indices of the mesh elements
++
++
++
++ vertices x coordinate [m]
++
++
++
++ vertices y coordinate [m]
++
++
++
++ vertices z coordinate [m]
++
++
++
++ edges of the 2d mesh (vertex1 vertex2 element1 element2)
++
++
++
++ number of edges of the 2d mesh
++
++
++
++
++
++
++ mesh dimension
++
++
++
++ number of extrusion layers
++
++
++
++ lower vertices flags list
++
++
++
++ lower elements flags list
++
++
++
++ upper vertices flags list
++
++
++
++ upper element flag list
++
++
++
++ upper vertex list (NaN for vertex on the upper surface)
++
++
++
++ upper element list (NaN for element on the upper layer)
++
++
++
++ lower vertex list (NaN for vertex on the lower surface)
++
++
++
++ lower element list (NaN for element on the lower layer
++
++
++
++ vertices on the boundary of the domain flag list
++
++
++
++ edges on domain boundary (vertex1 vertex2 element)
++
++
++
++ number associated to each segment
++
++
++
++ list of vertices connected to vertex_i
++
++
++
++ list of vertices connected to element_i
++
++
++
++ average number of vertices connected to one vertex
++
++
++
++
++
++
++ vertices extracted from the model
++
++
++
++ elements extracted from the model
++
++
++
++
++
++
++ vertices latitude [degrees]
++
++
++
++ verticies longitude [degrees]
++
++
++
++ Indicate hemisphere 'n' or 's'
++
++
++
++
++
++
++ is ice grounded ? grounded ice if > 0, grounding line position if = 0, floating ice if < 0
++
++
++
++ presence of ice if > 0, icefront position if = 0, no ice if < 0
++
++
++
++
++
++
++
++ surface elevation [m]
++
++
++
++ ice thickness [m]
++
++
++
++ bed elevation [m]
++
++
++
++ bathymetry elevation [m]
++
++
++
++ coefficient for ice shelves; thickness correction: hydrostatic_ratio H_obs+ (1-hydrostatic_ratio) H_hydro
++
++
++
++
++
++
++ gravitational acceleration [m/s^2]
++
++
++
++ number of seconds in a year [s/yr]
++
++
++
++ reference temperature used in the enthalpy model [K]
++
++
++
++
++
++ surface mass balance [m/yr ice eq]
++
++
++
++
++
++ basal melting rate (positive if melting) [m/yr]
++
++
++
++ additional melting applied to compensate for dh/dt [m/yr]
++
++
++
++ geothermal heat flux [W/m^2]
++
++
++
++
++
++ ice density [kg/m^3]
++
++
++
++ ocean water density [kg/m^3]
++
++
++
++ fresh water density [kg/m^3]
++
++
++
++ water viscosity [N s/m^2]
++
++
++
++ heat capacity [J/kg/K]
++
++
++
++ latent heat of fusion [J/kg]
++
++
++
++ ice thermal conductivity [W/m/K]
++
++
++
++ temperate ice thermal conductivity [W/m/K]
++
++
++
++ melting point of ice at 1atm in K
++
++
++
++ rate of change of melting point with pressure [K/Pa]
++
++
++
++ mixed layer capacity [W/kg/K]
++
++
++
++ thermal exchange velocity [m/s]
++
++
++
++ flow law parameter [Pa/s^(1/n)]
++
++
++
++ Glens flow law exponent
++
++
++
++ law for the temperature dependance of the rheology: "None", "Paterson", "Arrhenius" or "LliboutryDuval"
++
++
++
++ Lithosphere shear modulus [Pa]
++
++
++
++ Lithosphere density [g/cm^-3]
++
++
++
++ Mantle shear modulus [Pa]
++
++
++
++ Mantle density [g/cm^-3]
++
++
++
++
++
++
++
++
++
++ damage law (string) from {"undamaged","pralong"}
++
++
++
++ damage tensor (scalar)
++
++
++
++ damage law (string) from {"undamaged","pralong"}
++
++
++
++ damage constraints (NaN means no constraint)
++
++
++
++ maximum possible damage (0<=max_damage<1)
++
++
++
++ 0: no, 1: artificial_diffusivity, 2: SUPG
++
++
++
++ maximum number of non linear iterations
++
++
++
++ stabilize unstable damage constraints that keep zigzagging after n iteration (default is 0, no stabilization)
++
++
++
++ threshold to declare convergence of damage evolution solution (default is 0)
++
++
++
++ scaling exponent (default is 3)
++
++
++
++
++
++
++
++
++ friction coefficient [SI]
++
++
++
++ p exponent
++
++
++
++ q exponent
++
++
++
++
++
++
++
++
++ is the Shallow Ice Approximation (SIA) used ?
++
++
++
++ is the Shelfy-Stream Approximation (SSA) used ?
++
++
++
++ is the L1L2 approximation used ?
++
++
++
++ is the Higher-Order (HO) approximation used ?
++
++
++
++ are the Full-FS (FS) equations used ?
++
++
++
++ Finite Element for SSA "P1", "P1bubble" "P1bubblecondensed" "P2"
++
++
++
++ Finite Element for HO "P1" "P1bubble" "P1bubblecondensed" "P1xP2" "P2xP1" "P2"
++
++
++
++ Finite Element for FS "P1P1" (debugging only) "P1P1GLS" "MINIcondensed" "MINI" "TaylorHood"
++
++
++
++ flow equation for each vertex
++
++
++
++ flow equation for each element
++
++
++
++ vertices on SSAs border (for tiling)
++
++
++
++ vertices on HOs border (for tiling)
++
++
++
++ vertices on FS border (for tiling)
++
++
++
++
++
++
++ simulation starting time [yr]
++
++
++
++ final time to stop the simulation [yr]
++
++
++
++ length of time steps [yr]
++
++
++
++ use cfl condition to define time step ? (0 or 1)
++
++
++
++ coefficient applied to cfl condition
++
++
++
++
++
++
++
++
++ x component of velocity [m/yr]
++
++
++
++ y component of velocity [m/yr]
++
++
++
++ z component of velocity [m/yr]
++
++
++
++ velocity norm [m/yr]
++
++
++
++ pressure field [Pa]
++
++
++
++ fraction of water in the ice
++
++
++
++ ice thickness [m]
++
++
++
++ sediment water head of subglacial system [m]
++
++
++
++ epl water head of subglacial system [m]
++
++
++
++ thickness of subglacial water [m]
++
++
++
++
++
++
++ structure containing all rift information (vertices coordinates, segments, type of melange, ...)
++
++
++
++ N/A
++
++
++
++
++
++
++
++ use Valgrind to debug (0 or 1)
++
++
++
++
++ use gnu-profiler to find out where the time is spent
++
++
++
++
++ enables profiling (memory, flops, time)
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ results are output for all the nodes of each element
++
++
++
++ I/O gathering strategy for result outputs (default 1)
++
++
++
++ is the memory limited ? (0 or 1)
++
++
++
++ frequency at which results are saved in all solutions with multiple time_steps
++
++
++
++ maximum number of minutes to wait for batch results (NaN to deactivate)
++
++
++
++ server hostname where model should be uploaded
++
++
++
++ path on server where model should be uploaded
++
++
++
++ server login
++
++
++
++ port login (default is 0)
++
++
++
++ unique id generated when uploading the file to server
++
++
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++
++
++ thickness constraints (NaN means no constraint) [m]
++
++
++
++ ice thickening rate used in the mass conservation (dh/dt) [m/yr]
++
++
++
++ 0: None, 1: SU, 2: SSAs artificial diffusivity, 3:DG
++
++
++
++
++
++
++
++ mechanical equilibrium residual convergence criterion
++
++
++
++ velocity relative convergence criterion, NaN: not applied
++
++
++
++ velocity absolute convergence criterion, NaN: not applied
++
++
++
++ 0: Picards fixed point, 1: Newtons method, 2: hybrid
++
++
++
++ maximum number of nonlinear iterations
++
++
++
++ over-shooting constant new=new+C*(new-old)
++
++
++
++
++
++
++ x-axis velocity constraint (NaN means no constraint) [m/yr]
++
++
++
++ y-axis velocity constraint (NaN means no constraint) [m/yr]
++
++
++
++ z-axis velocity constraint (NaN means no constraint) [m/yr]
++
++
++
++
++
++
++ threshold for instability of mechanical constraints
++
++
++
++ number of iterations before rift penalties are locked
++
++
++
++
++
++
++ use dampening for floating ice ? Only for FS model
++
++
++
++ multiplier for incompressibility equation. Only for FS model
++
++
++
++ local referential
++
++
++
++ loading force applied on each point [N/m^3]
++
++
++
++ additional outputs requested
++
++
++
++
++
++
++
++
++
++ type of grounding line migration: "SoftMigration","AgressiveMigration" or "None"
++
++
++
++ melting rate applied when previously grounded parts start floating [m/yr]
++
++
++
++
++
++
++
++
++ water thickness constraints (NaN means no constraint) [m]
++
++
++
++ Manning roughness coefficient
++
++
++
++ tortuosity parameter
++
++
++
++ dimensionless exponent in Manning velocity formula
++
++
++
++ dimensionless exponent in Manning velocity formula
++
++
++
++ parameter in effective pressure formula
++
++
++
++ artificial diffusivity (default is 1). can be more than 1 to increase diffusivity.
++
++
++
++
++
++
++
++ thickness constraints (NaN means no constraint) [m]
++
++
++
++ calving rate at given location [m/a]
++
++
++
++ do we use free surfaces (FS only) are mass conservation
++
++
++
++ minimum ice thickness allowed [m]
++
++
++
++ adjustment of ice shelves surface and bed elevations: 'Incremental' or 'Absolute'
++
++
++
++ 0: no, 1: artificial_diffusivity, 2: streamline upwinding, 3: discontinuous Galerkin
++
++
++
++
++
++
++ offset used by penalties: penalty = Kmax*10^offset
++
++
++
++ pairs of vertices that are penalized
++
++
++
++ additional outputs requested
++
++
++
++
++
++
++
++ temperature constraints (NaN means no constraint) [K]
++
++
++
++ 0: no, 1: artificial_diffusivity, 2: SUPG
++
++
++
++ maximum number of non linear iterations
++
++
++
++ stabilize unstable thermal constraints that keep zigzagging after n iteration (default is 0, no stabilization)
++
++
++
++ threshold to declare convergence of thermal solution (default is 0)
++
++
++
++ scaling exponent (default is 3)
++
++
++
++ use an enthalpy formulation to include temperate ice (default is 0)
++
++
++
++ enable dynamic setting of basal forcing. required for enthalpy formulation (default is 0)
++
++
++
++ additional outputs requested
++
++
++
++
++
++
++
++ relative tolerance criterion [K]
++
++
++
++ maximum number of iterations
++
++
++
++ additional requested outputs
++
++
++
++
++
++
++
++ indicates whether a masstransport solution is used in the transient
++
++
++
++ indicates whether a stressbalance solution is used in the transient
++
++
++
++ indicates whether a thermal solution is used in the transient
++
++
++
++ indicates whether a groundingline migration is used in the transient
++
++
++
++ indicates whether a postglacial rebound model is used in the transient
++
++
++
++ indicates whether damage evolution is used in the transient
++
++
++
++ LEVEL SET DESCRIPTION...
++
++
++
++ list of additional outputs requested
++
++
++
++
++
++
++
++ mantle viscosity[Pa s]
++
++
++
++ lithosphere thickness (km)
++
++
++
++ 1: square-edged (default). 2: elliptical. See iedge in GiaDeflectionCore
++
++
++
++
++
++
++
++
++ indicates if the automatic differentiation is activated
++
++
++
++ list of dependent variables
++
++
++
++ list of independent variables
++
++
++
++ ADOLC driver ('fos_forward' or 'fov_forward')
++
++
++
++ Number of operations per buffer (==OBUFSIZE in usrparms.h)
++
++
++
++ Number of locations per buffer (==LBUFSIZE in usrparms.h)
++
++
++
++ Number of values per buffer (==CBUFSIZE in usrparms.h)
++
++
++
++ Number of taylors per buffer (<=TBUFSIZE in usrparms.h)
++
++
++
++ free location block sorting/consolidation triggered if the ratio between allocated and used locations exceeds gcTriggerRatio
++
++
++
++ free location block sorting/consolidation triggered if the allocated locations exceed gcTriggerMaxSize
++
++
++
++
++
++
++
++ name of kml output targets file
++
++
++
++ name of kml input tracks file
++
++
++
++ structure of kml flight requirements (not used yet)
++
++
++
++ element or nodal criterion for flight path evaluation (metric)
++
++
++
++
++
++
++ number of grids at equator (determines resolution)
++
++
++
++
++ flag to consider target values for flight path evaluation
++
++
++
++
++ flag to split polygons on the antimeridian
++
++
++
++
++
++
++
++ optimize? (default false)
++
++
++
++ number of directions to test when moving a point. If this value = 1, a random direction is tested. A value > 1 results in directions equally spaced from [0, 2*PI] being tested. For example, 4 would result in directions [0, PI/2, PI, 3PI/2]
++
++
++
++ specifies the distance in km (default 25) to move a randomly selected path point on each iteration
++
++
++
++ number of iterations (default 30,000) to run for flightplan optimization, i.e. the number of times to randomly select a point and move it.
++
++
++
++
++
++
++ name of kml solution file
++
++
++
++ quality of kml solution
++
++
++
++
++
++
++
++ is inversion activated?
++
++
++
++ 1: linear viscosity, 0: non-linear viscosity
++
++
++
++ ex: {'FrictionCoefficient'}, or {'MaterialsRheologyBbar'}
++
++
++
++ number of optimization searches
++
++
++
++ indicate the type of response for each optimization step
++
++
++
++ cost_functions_coefficients applied to the misfit of each vertex and for each control_parameter
++
++
++
++ misfit convergence criterion. Default is 1%, NaN if not applied
++
++
++
++ maximum iterations during each optimization step
++
++
++
++ scaling factor on gradient direction during optimization, for each optimization step
++
++
++
++ decrease threshold for misfit, default is 30%
++
++
++
++ absolute minimum acceptable value of the inversed parameter on each vertex
++
++
++
++ absolute maximum acceptable value of the inversed parameter on each vertex
++
++
++
++ observed velocity x component [m/yr]
++
++
++
++ observed velocity y component [m/yr]
++
++
++
++ observed velocity magnitude [m/yr]
++
++
++
++ observed thickness [m])
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
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++ is qmu analysis activated?
++
++
++
++ (arrays of each variable class)
++
++
++
++ (arrays of each response class)
++
++
++
++ number of responses
++
++
++
++ (array of method-independent parameters)
++
++
++
++ (information from dakota files)
++
++
++
++ user provided mesh partitioning, defaults to metis if not specified
++
++
++
++ number of partitions for semi-discrete qmu
++
++
++
++
++
++
++
++ use an enthalpy formulation to include temperate ice (default is 0)
++
++
++
++ array of dakota_method class
++
++
++
++ directory for mass flux profiles
++
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++ additional outputs requested
++
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++ weight applied to each mesh vertex
++
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++ list of potential outputs that can be requested, but which need additional data to be defined
++
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++
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++ notes in a cell of strings
++
++
++
++ model name
++
++
++
++ empty field to store some data
++
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++
++
+\ No newline at end of file
+
+Property changes on: ../trunk-jpl/src/java/build/resources/default_config.xml
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/file_ops.xcf
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/file_ops.xcf
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/file_ops.xcf (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/file_ops.xcf (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/file_ops.xcf
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/filesave.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/filesave.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/filesave.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/filesave.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/filesave.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/viewmag.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/viewmag.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/viewmag.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/viewmag.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/viewmag.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/ini_open.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/ini_open.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/ini_open.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/ini_open.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/ini_open.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/fileopen.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/fileopen.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/fileopen.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/fileopen.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/fileopen.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/xml_open.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/xml_open.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/xml_open.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/xml_open.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/xml_open.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/filesaveas.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/filesaveas.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/filesaveas.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/filesaveas.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/filesaveas.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/opensettings.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/opensettings.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/opensettings.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/opensettings.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/opensettings.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/reset.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/reset.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/reset.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/reset.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/reset.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/advancedsettings.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/advancedsettings.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/advancedsettings.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/advancedsettings.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/advancedsettings.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/mydocuments.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/mydocuments.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/mydocuments.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/mydocuments.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/mydocuments.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/readme.txt
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/readme.txt (revision 0)
++++ ../trunk-jpl/src/java/build/resources/icons/readme.txt (revision 17993)
+@@ -0,0 +1,10 @@
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++This copyright and license notice covers the images in this directory.
++************************************************************************
++
++TITLE: Crystal Project Icons
++AUTHOR: Everaldo Coelho
++SITE: http://www.everaldo.com
++CONTACT: everaldo@everaldo.com
++
++Copyright (c) 2006-2007 Everaldo Coelho.
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/readme.txt
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/icons/kghostview.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/build/resources/icons/kghostview.png
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/icons/kghostview.png (revision 17992)
++++ ../trunk-jpl/src/java/build/resources/icons/kghostview.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/build/resources/icons/kghostview.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build/resources/config_schema-0.1.1.xsd
+===================================================================
+--- ../trunk-jpl/src/java/build/resources/config_schema-0.1.1.xsd (revision 0)
++++ ../trunk-jpl/src/java/build/resources/config_schema-0.1.1.xsd (revision 17993)
+@@ -0,0 +1,154 @@
++
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+
+Property changes on: ../trunk-jpl/src/java/build/resources/config_schema-0.1.1.xsd
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/License.txt
+===================================================================
+--- ../trunk-jpl/src/java/License.txt (revision 0)
++++ ../trunk-jpl/src/java/License.txt (revision 17993)
+@@ -0,0 +1,674 @@
++ GNU GENERAL PUBLIC LICENSE
++ Version 3, 29 June 2007
++
++ Copyright (C) 2007 Free Software Foundation, Inc.
++ Everyone is permitted to copy and distribute verbatim copies
++ of this license document, but changing it is not allowed.
++
++ Preamble
++
++ The GNU General Public License is a free, copyleft license for
++software and other kinds of works.
++
++ The licenses for most software and other practical works are designed
++to take away your freedom to share and change the works. By contrast,
++the GNU General Public License is intended to guarantee your freedom to
++share and change all versions of a program--to make sure it remains free
++software for all its users. We, the Free Software Foundation, use the
++GNU General Public License for most of our software; it applies also to
++any other work released this way by its authors. You can apply it to
++your programs, too.
++
++ When we speak of free software, we are referring to freedom, not
++price. Our General Public Licenses are designed to make sure that you
++have the freedom to distribute copies of free software (and charge for
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++want it, that you can change the software or use pieces of it in new
++free programs, and that you know you can do these things.
++
++ To protect your rights, we need to prevent others from denying you
++these rights or asking you to surrender the rights. Therefore, you have
++certain responsibilities if you distribute copies of the software, or if
++you modify it: responsibilities to respect the freedom of others.
++
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++
++ Developers that use the GNU GPL protect your rights with two steps:
++(1) assert copyright on the software, and (2) offer you this License
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++ For the developers' and authors' protection, the GPL clearly explains
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++ "Additional permissions" are terms that supplement the terms of this
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++for and in connection with specific products or compilations that
++contain the covered work, unless you entered into that arrangement,
++or that patent license was granted, prior to 28 March 2007.
++
++ Nothing in this License shall be construed as excluding or limiting
++any implied license or other defenses to infringement that may
++otherwise be available to you under applicable patent law.
++
++ 12. No Surrender of Others' Freedom.
++
++ If conditions are imposed on you (whether by court order, agreement or
++otherwise) that contradict the conditions of this License, they do not
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++to collect a royalty for further conveying from those to whom you convey
++the Program, the only way you could satisfy both those terms and this
++License would be to refrain entirely from conveying the Program.
++
++ 13. Use with the GNU Affero General Public License.
++
++ Notwithstanding any other provision of this License, you have
++permission to link or combine any covered work with a work licensed
++under version 3 of the GNU Affero General Public License into a single
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++License will continue to apply to the part which is the covered work,
++but the special requirements of the GNU Affero General Public License,
++section 13, concerning interaction through a network will apply to the
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++
++ 14. Revised Versions of this License.
++
++ The Free Software Foundation may publish revised and/or new versions of
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++be similar in spirit to the present version, but may differ in detail to
++address new problems or concerns.
++
++ Each version is given a distinguishing version number. If the
++Program specifies that a certain numbered version of the GNU General
++Public License "or any later version" applies to it, you have the
++option of following the terms and conditions either of that numbered
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++Foundation. If the Program does not specify a version number of the
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++
++ If the Program specifies that a proxy can decide which future
++versions of the GNU General Public License can be used, that proxy's
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++to choose that version for the Program.
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++ Later license versions may give you additional or different
++permissions. However, no additional obligations are imposed on any
++author or copyright holder as a result of your choosing to follow a
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++ 15. Disclaimer of Warranty.
++
++ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
++APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
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++IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
++ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
++
++ 16. Limitation of Liability.
++
++ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
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++PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
++EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
++SUCH DAMAGES.
++
++ 17. Interpretation of Sections 15 and 16.
++
++ If the disclaimer of warranty and limitation of liability provided
++above cannot be given local legal effect according to their terms,
++reviewing courts shall apply local law that most closely approximates
++an absolute waiver of all civil liability in connection with the
++Program, unless a warranty or assumption of liability accompanies a
++copy of the Program in return for a fee.
++
++ END OF TERMS AND CONDITIONS
++
++ How to Apply These Terms to Your New Programs
++
++ If you develop a new program, and you want it to be of the greatest
++possible use to the public, the best way to achieve this is to make it
++free software which everyone can redistribute and change under these terms.
++
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++to attach them to the start of each source file to most effectively
++state the exclusion of warranty; and each file should have at least
++the "copyright" line and a pointer to where the full notice is found.
++
++
++ Copyright (C)
++
++ This program is free software: you can redistribute it and/or modify
++ it under the terms of the GNU General Public License as published by
++ the Free Software Foundation, either version 3 of the License, or
++ (at your option) any later version.
++
++ This program is distributed in the hope that it will be useful,
++ but WITHOUT ANY WARRANTY; without even the implied warranty of
++ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++ GNU General Public License for more details.
++
++ You should have received a copy of the GNU General Public License
++ along with this program. If not, see .
++
++Also add information on how to contact you by electronic and paper mail.
++
++ If the program does terminal interaction, make it output a short
++notice like this when it starts in an interactive mode:
++
++ Copyright (C)
++ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
++ This is free software, and you are welcome to redistribute it
++ under certain conditions; type `show c' for details.
++
++The hypothetical commands `show w' and `show c' should show the appropriate
++parts of the General Public License. Of course, your program's commands
++might be different; for a GUI interface, you would use an "about box".
++
++ You should also get your employer (if you work as a programmer) or school,
++if any, to sign a "copyright disclaimer" for the program, if necessary.
++For more information on this, and how to apply and follow the GNU GPL, see
++.
++
++ The GNU General Public License does not permit incorporating your program
++into proprietary programs. If your program is a subroutine library, you
++may consider it more useful to permit linking proprietary applications with
++the library. If this is what you want to do, use the GNU Lesser General
++Public License instead of this License. But first, please read
++.
+
+Property changes on: ../trunk-jpl/src/java/License.txt
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/inishell.sh
+===================================================================
+--- ../trunk-jpl/src/java/inishell.sh (revision 0)
++++ ../trunk-jpl/src/java/inishell.sh (revision 17993)
+@@ -0,0 +1,8 @@
++#/bin/bash
++#This is just the necessary command line to run a jar file
++
++#recover file name:
++xmlfilename=$1
++
++#call inishell
++java -jar dist/inishell.jar $xmlfilename
+
+Property changes on: ../trunk-jpl/src/java/inishell.sh
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/Changelog_1.0.0.txt
+===================================================================
+--- ../trunk-jpl/src/java/Changelog_1.0.0.txt (revision 0)
++++ ../trunk-jpl/src/java/Changelog_1.0.0.txt (revision 17993)
+@@ -0,0 +1,29 @@
++This is the changelog for Inishell release 1.0.0
++ *editing existing ini file:
++ +populate the GUI according to the values in an existing ini file
++ +show progress bar while loading
++ +Comments are preserved, nested template parameters properly handled, unknown keys are preserved
++
++ *usability improvements:
++ +the file dialogs remember the last path they pointed to
++ +add ".ini" extension when saving to a config file if necessary
++ +new icons, hoping to make their meaning clearer
++ +reset button on the GUI to revert to defaults
++
++ *layout improvements:
++ +fixed help text horizontal alignements issues
++ +the help text is now verticaly aligned with the top of the widget
++ +Notion of hierarchy for an easier handling of layout issues
++ +layout now consistent between Linux and Windows, still some small spacing differences with osX
++ +possibility to group parameters in a frame with a frame title
++
++ *bug fixes:
++ +default value in comboBox is honored
++ +mandatory comboBox properly handled on osX
++ +better help text handling
++
++ *others:
++ +keys are printed in the order they appear on the GUI
++ +code cleanup and optimizations
++ +add version information in MANIFEST and title bar
++ +clean up and reorganization in build.xml, add help and pack targets
+
+Property changes on: ../trunk-jpl/src/java/Changelog_1.0.0.txt
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/dist/inishell.jar
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/dist/inishell.jar
+===================================================================
+--- ../trunk-jpl/src/java/dist/inishell.jar (revision 17992)
++++ ../trunk-jpl/src/java/dist/inishell.jar (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/dist/inishell.jar
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/doc/examples/io.ini
+===================================================================
+--- ../trunk-jpl/src/java/doc/examples/io.ini (revision 0)
++++ ../trunk-jpl/src/java/doc/examples/io.ini (revision 17993)
+@@ -0,0 +1,180 @@
++[General]
++PLUGINPATH = ../../lib/plugins ;super
++BUFF_CHUNK_SIZE = 30
++BUFF_BEFORE = 1.5
++
++[Input]
++COORDSYS = CH1903
++TIME_ZONE = 1
++; COORDSYS = PROJ4
++; COORDPARAM = 21781
++
++#reading ARC dem
++DEM = ARC
++DEMFILE = ./input/surface-grids/Switzerland_1000m.asc
++
++#reading ARPS dem
++; DEM = ARPS
++; DEMFILE = ./wgrt10r2_vw4.asc
++; ARPS_X = 653400
++; ARPS_Y = 112204
++
++#reading PGM image as dem
++; DEM = PGM
++; DEMFILE = ./Switzerland.pgm
++; PGM_XCOORD = 479500.
++; PGM_YCOORD = 73500.
++; PGM_CELLSIZE = 1000.
++; PGM_MIN = 193.
++; PGM_MAX = 4204.
++
++; LANDUSE = ARC
++; LANDUSEFILE = ch_as97.asc
++
++#Alpine3D traditional inputs -> A3D plugin
++; METEO = A3D
++; METEOPATH = ./input/meteo
++
++#Borma
++; METEO = BORMA
++; METEOPATH = ./input/xml
++; NROFSTATIONS = 1
++; STATION1 = 00.00.00.2
++
++#Snowpack input
++; METEO = SNOWPACK
++; METEOPATH = input
++; METAFILE = IMIS_Extracted_Info.txt ;metadata for all stations
++; STATION1 = MST96_RR.inp
++
++#SMET meteorological file format
++METEO = SMET
++METEOPATH = ./input/meteo
++STATION1 = FLU2.smet
++STATION2 = FIR2.smet
++STATION3 = FRA2.smet
++STATION4 = GLA2.smet
++STATION5 = ILI2.smet
++STATION6 = OTT2.smet
++STATION7 = TUJ3.smet
++
++#IMIS network database input -> IMIS plugin
++; METEO = IMIS
++; DBNAME = sdbo
++; DBUSER = XXX
++; DBPASS = XXX
++; NROFSTATIONS = 4
++; STATION1 = MORN2
++; STATION2 = DAV3
++; STATION3 = KLO2
++; STATION4 = *SAM0
++
++#GEOtop traditional inputs -> GEOTOP plugin
++; METEO = GEOTOP
++; METEOPATH = meteo/
++; METEOPREFIX = _meteo
++
++#GSN direct input -> GSN plugin
++; METEO = GSN
++; ENDPOINT = http://montblanc.slf.ch:22001/services/A3DWebService
++; STATION1 = wan_sen14_2008
++; STATION2 = wan2
++
++[Output]
++COORDSYS = CH1903
++TIME_ZONE = 1
++
++GRID2D = ARC
++GRID2DPATH = ./
++
++; GRID2D = PNG
++; GRID2DPATH = ./
++; PNG_MIN_SIZE = 800x600
++; PNG_WORLD_FILE = true
++; PNG_AUTOSCALE = false
++; PNG_SCALING = nearest
++
++METEO = SMET
++METEOPATH = ./
++
++[Filters]
++TA::filter1 = min_max
++TA::arg1 = 240 320
++
++RH::filter1 = min_max
++RH::arg1 = 0.01 1.2
++RH::filter2 = min_max
++RH::arg2 = soft 0.05 1.0
++
++HNW::filter1 = min
++HNW::arg1 = -0.1
++HNW::filter2 = min
++HNW::arg2 = soft 0.
++
++ISWR::filter1 = min_max
++ISWR::arg1 = -10. 1500.
++ISWR::filter2 = min
++ISWR::arg2 = soft 0.
++
++RSWR::filter1 = min_max
++RSWR::arg1 = -10 1500
++RSWR::filter2 = min
++RSWR::arg2 = soft 0
++
++#for TA between 240 and 320 K
++ILWR::filter1 = min_max
++ILWR::arg1 = 188 600
++ILWR::filter2 = min_max
++ILWR::arg2 = soft 200 400
++
++#we need to consider time with no snow -> TSS>0
++#min(TSS) in db since 1998: -50C
++TSS::filter1 = min_max
++TSS::arg1 = 200 320
++
++#idem
++TSG::filter1 = min_max
++TSG::arg1 = 200 320
++
++HS::filter1 = min
++HS::arg1 = soft 0.0
++HS::filter2 = rate
++HS::arg2 = 5.55e-5 ;0.20 m/h
++
++VW::filter1 = min_max
++VW::arg1 = -2 70
++VW::filter2 = min_max
++VW::arg2 = soft 0.2 50.0
++
++[Interpolations1D]
++WINDOW_SIZE = 86400
++
++TA::resample = linear
++
++RH::resample = linear
++
++HS::resample = linear
++
++VW::resample = nearest_neighbour
++VW::args = extrapolate
++
++HNW::resample = linear
++
++[Interpolations2D]
++TA::algorithms = IDW_LAPSE CST_LAPSE
++TA::cst_lapse = -0.008
++TA::idw_lapse = -0.008 soft
++
++RH::algorithms = RH IDW_LAPSE CST
++
++HNW::algorithms = IDW_LAPSE CST_LAPSE CST
++HNW::cst_lapse = 0.0005 frac
++
++VW::algorithms = IDW_LAPSE CST
++
++P::algorithms = STD_PRESS
++
++ILWR::algorithms = CST_LAPSE
++ILWR::cst_lapse = -0.03125
++
++RSWR::algorithms = IDW CST
+
+Property changes on: ../trunk-jpl/src/java/doc/examples/io.ini
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/doc/examples/meteoio_config.xml
+===================================================================
+--- ../trunk-jpl/src/java/doc/examples/meteoio_config.xml (revision 0)
++++ ../trunk-jpl/src/java/doc/examples/meteoio_config.xml (revision 17993)
+@@ -0,0 +1,919 @@
++
++
++
++
++
++ Size in days of a chunk of data to read at once.
++
++
++
++
++ Alternate way of buffer centering: When rebuffering, the new date will be located BUFF_BEFORE days from the
++ beginning of the buffer (therefore, it takes a value in days).
++
++
++
++
++
++
++
++
++
++
++
++ coordinate system
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ plugin for METEO data
++
++
++
++
++
++ The name of the parameter to copy (e.g. TA, RH, VW, ISWR, etc)
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ plugin for Digital Elevation Model data
++
++
++
++
++
++
++
++
++ plugin for land cover data
++
++
++
++
++
++
++
++
++
++
++
++
++
++ plugin for 2D gridded data
++
++
++
++
++
++ filename for station number #
++
++
++
++
++ station id for the given station number #
++
++
++
++
++ Coordinates are given as "lat lon" or "xcoord ycoord epsg_code"
++
++
++
++
++
++
++ string containing the path to the xml files
++
++
++
++
++
++
++ database name, as provided by your database administrator
++
++
++ database user name
++
++
++ database password associated with the user name
++
++
++
++
++ OPTIONAL: use ANETZ stations to provide precipitations for normal IMIS stations.
++ Each IMIS station is associated with one or two ANETZ stations and does a weighted
++ average to get what should be its local precipitations
++
++
++
++
++ OPTIONAL: if set to false (default), all IMIS precipitation will be deleted (since IMIS stations don't have heated rain gauges, their precipitation measurements are not good in winter conditions). If set to true, it is strongly advised to use a FilterHNWMelt filter to detect snow melting in the rain gauge and perform winter conditions detection in the application.
++
++
++
++
++ if set to true, the SNOWPACK simulated Snow Water Equivalent from the database will be used to compute HNW. Data gaps greater than 3 hours on SWE will lead to unchanged hnw while all data that can properly be computed will overwrite hnw. (default=false)
++
++
++
++
++
++
++
++ string containing the path to the grib files
++
++
++ grib file extension, or none for no file extension (default: .grb)
++
++
++
++
++
++
++
++ string containing the path to the data files
++
++
++ absolute filename of the geotop.inpts file
++
++
++ prefix to append when generating a file name for reading
++
++
++
++
++
++ string containing the path to the data files
++
++
++ specifiy in which order the columns should be printed out
++
++
++
++
++
++ webserver running GSN with its port number and full path. For example:
++ http://montblanc.slf.ch:22001/services/A3DWebService
++
++
++ Should the connection go through a proxy? This is useful for servers
++ filtering on domains but usually not necessary.
++
++
++
++
++
++
++
++
++
++
++ string containing the path to the smet files
++
++
++
++
++
++
++ string representing path where SMET files should be saved
++
++
++
++
++
++
++
++
++
++ string containing the path to the SNOWPACK files
++
++
++ filename of the meta data file (in METEOPATH)
++
++
++
++ the number of measured snow temperatures provided
++
++
++
++ the number of solutes for which input data are provided
++
++
++
++
++
++
++
++
++
++
++
++
++
++ OPTIONAL: wind velocity to use for blowing and drifting snow is provided
++
++
++
++
++ OPTIONAL: measured new snow density is provided
++
++
++
++
++
++
++
++
++
++
++ generate names compatible with Alpine3D's grid viewer?
++
++
++ grid file extension, or none for no file extension (default: .asc)
++
++
++
++
++
++ x coordinate of the lower left corner of the grids
++
++
++ y coordinate of the lower left corner of the grids
++
++
++ grid file extension, or none for no file extension (default: .asc)
++
++
++
++
++
++ prefix to append when generating a file name for reading (ie: something like "laf" for Cosmo-Analysis-full domain)
++
++
++ grib file extension, or none for no file extension (default: .grb)
++
++
++
++
++
++
++
++ generate a world file for each output file? This file contains the geolocalization information
++
++
++
++
++ generate a legend?
++
++
++
++
++ autoscale color scale?
++
++
++
++
++ scaling algorithm (default=bilinear)
++
++
++ minimum dimensions of the PNG, like 640x480
++
++
++ maximum dimensions of the PNG, like 1024x768
++
++
++
++
++ generate a color indexed file (default=true)
++
++
++
++
++ optimize for speed (default=false)
++
++
++ number of colors in the palette (default=30)
++
++
++
++
++
++ lower left x coordinate
++
++
++ lower left y coordinate
++
++
++ cellsize in meters
++
++
++ minimum value in real world coordinates to match with the minimum value read out of the PGM file (such minimum being greater than 0 because 0 is NODATA)
++
++
++ maximum value in real world coordinates to match with the maximum value read out of the PGM file
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Mean average processing. The mean average filter returns the mean value of all values within a user given time window.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Median average processing. The median average filter returns the median value of all values within a user given time window.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Standard deviation filter. Values outside of mean ± 2 std_dev are rejected.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Median Absolute Deviation. Values outside of median ± 3 σ_MAD are rejected. <br>
++ See http://en.wikipedia.org/wiki/Median_absolute_deviation for more information.
++
++
++
++
++
++
++ The keyword "soft" maybe added, if the window position is allowed to be adjusted to the data present.
++ The two arguments may be preceded by the keywords "left", "center" or "right", indicating the window position.
++
++
++ Tukey 53H method A smooth time sequence is generated from the median, substracted from the original signal and
++ compared with the standard deviation. see "Despiking Acoustic Doppler Velocimeter Data", Derek G. Goring and Vladimir
++ L. Nikora, Journal of Hydraulic Engineering, 128, 1, 2002 The deviation factor coeffecient is currently hard-coded as k=1.5.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Wind vector averaging. This calculates the vector average over a user given time period. Each wind vector
++ within this period is added and the final sum is normalized by the number of vectors that have been added.
++
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++ Alpha needs to be provided as last argument. Please note that the standard filter works with a left window!
++
++
++ Exponential smooting processing, exponential moving average s_0 = x_0 s_n = alpha*x_(t-1) + (1-alpha)*s_t-1
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++ Please note that the standard filter works with a left window!
++
++
++ Weighted moving average smoothing such as: WMA = (1*X1 + 2*X2 + ... + n*Xn) / sum_of_weights
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ This implements the standard methods for precipitation correction as described in "WMO Solid Precipitation Measurement Intercomparison", B. Goodison, P. Louie and D. Yang, 872, 1998 as well as the overview given by "Literature Study on the Correction of Precipitation Measurements", Annette Wagner, 2009. The correction parameters for the shielded Hellmann gauge (German version) are from "Wind-induced Precipitation Undercatch of the Hellmann Gauges", Daqing Yang et al, Nordic Hydrology, 30, 1999, pp 57-80.
++
++
++
++
++
++
++ This applies a constant correction factor to the precipitation, one for pure snow and one for mixed precipitation. The following thresholds are used: pure snow below -2 C; mixed precipitation between -2 and +2 C; pure rain above 2 C. These threshold can be changed (see online documentation).
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ Affects resampling: expresses (in seconds) how far a valid point can be
++ searched for when re-interpolating a missing value
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ Detrend the measured data, fill the grid with the average over all the stations, reapply the elevation trend
++
++
++
++
++ Detrend the measured data, apply Inverse Distance Weighted average, reapply elevation trend
++
++
++
++ Same as IDW_LAPSE, but only considering a given number of neighboring stations
++
++
++
++
++
++ Base algorithm (do not forget to add the options for the base algorithm)
++
++ Distribute precipitation with a base algorithm (IDW_LAPSE by default), then reduce/remove precipitation on
++ steep slopes and correct with the local curvature. This is to simulate snow redistribution processes.
++
++
++
++ Variogram model
++
++ Ordinary kriging (EXPERIMENTAL)
++
++
++
++
++
++
+\ No newline at end of file
+
+Property changes on: ../trunk-jpl/src/java/doc/examples/meteoio_config.xml
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/doc/examples/snowpack_config.xml
+===================================================================
+--- ../trunk-jpl/src/java/doc/examples/snowpack_config.xml (revision 0)
++++ ../trunk-jpl/src/java/doc/examples/snowpack_config.xml (revision 17993)
+@@ -0,0 +1,1084 @@
++
++
++
++
++
++
++ Size in days of a chunk of data to read at once.
++
++
++
++
++ Alternate way of buffer centering: When rebuffering, the new date will be located BUFF_BEFORE days from the
++ beginning of the buffer (therefore, it takes a value in days).
++
++
++
++
++
++
++
++
++
++
++
++ coordinate system
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ plugin for METEO data
++
++
++
++
++ The name of the parameter to copy (e.g. TA, RH, VW, ISWR, etc)
++
++ Copy a meteo parameter into a new one (you should not need this)
++
++
++
++
++
++
++
++
++ Path to the land surface and snow input parameters
++
++
++
++
++
++ Plugin to use for reading SNO data
++
++
++
++ file name for the initial profile for station number #
++
++
++
++
++
++
++
++ Path to the outputs (this path MUST exist, it won't be created)
++
++
++
++ Option to give an additional simulation specific output name to the run in addition to "STATION_NAME")
++
++
++
++
++
++
++
++ Write meteo data out?
++
++
++
++ When to start writing meteo data out (offset, in days)
++
++
++
++ How often to write meteo data out (in days: 3 hours=.125, 1 hour=4.1666e-2)
++
++
++
++
++
++ If AVGSUM_TIME_SERIES is set, mean fluxes and cumulated masses since last dump are written, else current energy fluxes, cumulated masses over last COMPUTATION_STEP_LENGTH (recommended setting in operational mode).
++
++
++
++
++
++ If CUMSUM_MASS is set, current value of cumulated masses since begin of run are dumped. Precipitations (rain and snow, rain) are always dumped as rates (kg m-2 h-1).
++
++
++
++
++
++ Write precipitation as rates (kg m-2 h-1, default) or as sums over the output time step. Please note that the units label in the output file and in SN_GUI <b>will remain kg m-2 h-1</b> and will therefore not match sums.
++
++
++
++
++
++
++
++
++
++ How to write the profiles (default: ASCII)
++
++
++
++
++
++ Write profile data out?
++
++
++
++ When to start writing profile data out (offset, in days)
++
++
++
++ How often to write profile data out (in days: 3 hours=.125, 1 hour=4.1666e-2)
++
++
++
++
++
++ Write the hand hardness in newtons (default) or as index
++
++
++
++
++
++ Classify the profile (default=false)? This is according to Schweizer, J. and M. Luetschg, <i>Characteristics of human-triggered avalanches</i>, 2001, Cold Reg. Sci. Technol. <b>33</b>(2-3)
++
++
++
++
++
++
++
++
++ Plugin to use for reading SNO data
++
++
++
++ Dump snow files every BACKUP_DAYS_BETWEEN days
++
++
++
++ First dump of sno files happens at end of run or after FIRST_BACKUP days, whichever happens first
++
++
++
++
++
++
++
++
++
++ Write canopy data out? To be set to TRUE only if CANOPY=TRUE
++
++
++
++
++
++ Write hazard data out? This must be FALSE for Alpine3D
++
++
++
++
++
++ Write turbulent fluxes out?
++
++
++
++
++
++ Write snow/soil temperatures out?
++
++
++
++
++
++
++ Write long wave radiation out?
++
++
++
++
++
++ Write short wave radiation out?
++
++
++
++
++
++ Write mass balance terms out?
++
++
++
++
++
++ Write meteo parameters out?
++
++
++
++
++
++ Write stability parameters out?
++
++
++
++
++
++
++
++
++
++ Internal time step (in minutes) used for model simulation. Please note that this MUST be the same as HNW::accumulate (the latter being in seconds) if re-acumulating precipitation, otherwise it would lead to wrong results.
++
++
++
++ Aerodynamic roughness length as a parameter for the Monin-Obukhov bulk formulation; A typical value for complex terrain is 0.01 m and for snow covered flat sites 0.001 m.
++
++
++
++ The instrument height (or model layer height) for meteorological input data except for wind, which may be at a different height; note that height is above ground for a standard SNOWPACK application but above surface (snow or ground) for Alpine3D applications.
++
++
++
++ The instrument height (or model layer height) for wind input data; note that height is above ground for a standard SNOWPACK application but above surface (snow or ground) for Alpine3D applications
++
++
++
++
++
++
++
++
++ Input mode by which a measurement of snow depth is used to drive the snow cover mass balance
++
++
++
++ Define the shortwave radiation input: <ol> <li value="0">Incoming shortwave radiation is measured and albedo estimated by the model;</li> <li>Reflected shortwave radiation is available as input and albedo is estimated by the model (IMIS standard);</li> <li>Incoming and reflected shortwave radiation are both measured and the albedo is estimated from both measurements subject to plausibility checks.</li> </ol>
++
++
++
++ Select the atmospheric stability correction model:<ol> <li value="-1"> use a simplified Richardson number stability correction;</li> <li>assume standard Monin-Obukhov bulk formulation for surface exchange iteration with Paulson, Stearns and Weidner (can be used with BC_CHANGE=0); </li> <li> force Monin-Obukhov formulation to assume neutral conditions regardless of the actual stratification; it has been shown to work well in complex terrain settings. It should be used with BC_CHANGE=1, i.e., Dirichlet bc but also is recommended with Neumann b.c., i.e., BC_CHANGE=0.</li> </ol>
++
++
++
++
++
++ Switch to tell the model that canopy is present (note that Canopy parameters should then be provided in the *.sno file)
++
++
++
++
++
++ A measured surface temperature is available and can be reliably used for various consistency tests (it needs to be set to true if enabling CHANGE_BC).
++
++
++
++
++
++ Use measured surface temperature as Dirichlet temperature BC for sub-freezing snowpacks and switch to Neumann only for melting snowpacks. If set to false, assumes Neumann boundary conditions.
++
++
++
++ Threshold value (small number below freezing), which switches from Dirichlet to Neumann BCs if CHANGE_BC is selected
++
++
++
++
++
++
++
++
++
++
++ Based on meteorological input from a (flat field) automatic station or numerical weather model, up to 8 expositions can be calculated in addition to the flat field if the corresponding *.sno files are provided. For example, if you provide a flat field *.snow file (mandatory), which is named KLO3.sno and you want 4 slopes to be calculated the corresponding slope files should be named KLO21.sno, …,KLO24.sno
++
++
++
++
++
++ Use the provided incoming long wave on the virtual slopes?
++
++
++
++
++
++ Specifies if redistribution of snow is allowed from (upwind) expositions to lee slopes. In case just the flat field is calculated, snow erosion is enabled but only for "ENFORCE_MEASURED_SNOW_HEIGHTS".
++
++
++
++
++
++
++
++
++ Soil layers as defined by the *.sno files are included in the simulation
++
++
++
++
++
++ Assume that the lower temperature boundary condition is given by GEO_HEAT (Neumann) and not by a measured temperature
++
++
++
++ Constant geothermal heat flux at great) depth W m-2): Lower flux boundary condition for temperature equation if BC is Neumann
++
++
++
++
++
++
++
++
++ <font color="FF0000">The keys in this section deeply affect the operation of the SNOWPACK model. This could lead to unexpected behavior or surprising results. If you are not an experienced Snowpack user, please do NOT change any keys below!</font>
++
++
++
++
++
++
++
++ variant selection (includes a choice of specific models)
++
++
++
++
++
++
++
++ perp_to_slope
++
++
++
++
++
++ Shifts the origin of the wind rose for snow redistribution and slope simulations: e.g. choose 45° to have NE/SE/SW/NW
++
++
++
++ Scaling factor to apply to wind values in case of drifting snow
++
++
++
++
++
++
++
++
++ Tell the model that relative humidity values are with respect to water regardless of the temperature
++
++
++
++ Temperature threshold for rain/snow transition
++
++
++
++ If ENFORCE_MEASURED_SNOW_HEIGHTS, relative humidity threshold for precipitation to occur
++
++
++
++ If ENFORCE_MEASURED_SNOW_HEIGHTS, (TA-TSS) threshold for precipitation to occur
++
++
++
++
++
++
++ Relative humidity threshold above which no surface hoar is allowed to form (because at very high humidity, typically no hoar crystals can form)
++
++
++
++ Wind speed threshold above which no surface hoar is allowed to form (because it will drift away)
++
++
++
++ Define the initial density for surface hoar at the time it gets buried by new snow
++
++
++
++ Define a threshold below which any traces of surface hoar will not be given a separate hoar layer when buried.
++
++
++
++ Assumed density of surface hoar while exposed at the surface and not buried
++
++
++
++
++
++
++ positions of temperatur sensors in snow or soil: positive values refer to heigths measured from the ground surface (snow only), negative values refer to depths measured from either the ground surface or the snow surface in case no soil layers are present. A sensor must at least be covered by MIN_DEPTH_SUBSURF (m) snow for its temperature to be output.
++
++
++
++
++ Minimum snow depth above a temperature sensor to accept the measurement
++
++
++
++ If you go to Antarctica or the tropics you may expect different reasonable temperatures
++
++
++
++ If you go to Antarctica or the tropics you may expect different reasonable temperatures
++
++
++
++
++
++
++
++
++
++
++
++ Choice of new snow density model (diverse statistical models)
++
++
++
++ Fixed value to be used as new snow density if a constant density model is chosen, otherwise the choices are "PARAMETERIZED" "EVENT" "MEASURED"
++
++
++
++
++
++ metamorphism_model
++
++
++
++ new_snow_grain_rad
++
++
++
++
++
++ strength_model
++
++
++
++
++
++ viscosity_model
++
++
++
++
++
++
++ hardness_model
++
++
++
++
++
++ Choose the Doorschot saltation model over the simple Sorenson parameterization
++
++
++
++
++
++ Select a multi stream model for shortwave radiation penetration into the snow cover
++
++
++
++
++
++ Force the model to work with a fixed albedo
++
++
++
++
++
++
++
++
++
++ Identify grass growing under the snow height sensor. This usually works well but might sometimes lead to problems
++
++
++
++
++
++ Switch to tell the model that a impermeable layer should be simulated on top of some snow or ice: this requires that the *.sno file contains this layer, which is characterized via the soil parameters; the option has successfully been used to simulate snow and ice protection using geo-textiles and saw dust.
++
++
++
++
++
++ If switched on, you can also simulate ponding on impermeable ice surfaces below the snow cover
++
++
++
++
++
++ Assuming an impermeable surface such as on a road or on geo-textiles (e.g. for snow farming), a liquid water layer is allowed to form on this surface
++
++
++
++
++
++
++ Standard size of a new element added to the stack of elements (layers) during snowfall events
++
++
++
++ Threshold value for enforcing the layer to be merged with the layer above or below
++
++
++
++
++
++ Combine neighboring elements based on a set of similarity conditions which are hard-coded
++
++
++
++
++
++
++ filename for station number #
++
++
++
++
++ station id for the given station number #
++
++
++
++
++ Coordinates are given as "lat lon" or "xcoord ycoord epsg_code"
++
++
++
++
++
++
++ string containing the path to the xml files
++
++
++
++
++
++
++ database name, as provided by your database administrator
++
++
++ database user name
++
++
++ database password associated with the user name
++
++
++
++
++ OPTIONAL: use ANETZ stations to provide precipitations for normal IMIS stations.
++ Each IMIS station is associated with one or two ANETZ stations and does a weighted
++ average to get what should be its local precipitations
++
++
++
++
++ OPTIONAL: if set to false (default), all IMIS precipitation will be deleted (since IMIS stations don't have heated rain gauges, their precipitation measurements are not good in winter conditions). If set to true, it is strongly advised to use a FilterHNWMelt filter to detect snow melting in the rain gauge and perform winter conditions detection in the application.
++
++
++
++
++ if set to true, the SNOWPACK simulated Snow Water Equivalent from the database will be used to compute HNW. Data gaps greater than 3 hours on SWE will lead to unchanged hnw while all data that can properly be computed will overwrite hnw. (default=false)
++
++
++
++
++
++
++
++ string containing the path to the grib files
++
++
++ grib file extension, or none for no file extension (default: .grb)
++
++
++
++
++
++
++
++ string containing the path to the data files
++
++
++ absolute filename of the geotop.inpts file
++
++
++ prefix to append when generating a file name for reading
++
++
++
++
++
++ webserver running GSN with its port number and full path. For example:
++ http://montblanc.slf.ch:22001/services/A3DWebService
++
++
++ Should the connection go through a proxy? This is useful for servers
++ filtering on domains but usually not necessary.
++
++
++
++
++
++
++
++
++
++
++ string containing the path to the smet files
++
++
++
++
++
++
++ string containing the path to the SNOWPACK files
++
++
++ filename of the meta data file (in METEOPATH)
++
++
++ the number of measured snow temperatures that are provided
++
++
++ the number of solutes for which input data are provided
++
++
++
++
++
++
++
++
++
++
++
++
++
++ OPTIONAL: wind velocity to use for blowing and drifting snow is provided
++
++
++
++
++ OPTIONAL: measured new snow density is provided
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Mean average processing. The mean average filter returns the mean value of all values within a user given time window.
++
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Median average processing. The median average filter returns the median value of all values within a user given time window.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Standard deviation filter. Values outside of mean ± 2 std_dev are rejected.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Median Absolute Deviation. Values outside of median ± 3 σ_MAD are rejected. <br>
++ See http://en.wikipedia.org/wiki/Median_absolute_deviation for more information.
++
++
++
++
++
++
++ The keyword "soft" maybe added, if the window position is allowed to be adjusted to the data present.
++ The two arguments may be preceded by the keywords "left", "center" or "right", indicating the window position.
++
++
++ Tukey 53H method A smooth time sequence is generated from the median, substracted from the original signal and
++ compared with the standard deviation. see "Despiking Acoustic Doppler Velocimeter Data", Derek G. Goring and Vladimir
++ L. Nikora, Journal of Hydraulic Engineering, 128, 1, 2002 The deviation factor coeffecient is currently hard-coded as k=1.5.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Wind vector averaging. This calculates the vector average over a user given time period. Each wind vector
++ within this period is added and the final sum is normalized by the number of vectors that have been added.
++
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++ Alpha needs to be provided as last argument. Please note that the standard filter works with a left window!
++
++
++ Exponential smooting processing, exponential moving average s_0 = x_0 s_n = alpha*x_(t-1) + (1-alpha)*s_t-1
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++ Please note that the standard filter works with a left window!
++
++
++ Weighted moving average smoothing such as: WMA = (1*X1 + 2*X2 + ... + n*Xn) / sum_of_weights
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ This implements the standard methods for precipitation correction as described in "WMO Solid Precipitation Measurement Intercomparison", B. Goodison, P. Louie and D. Yang, 872, 1998 as well as the overview given by "Literature Study on the Correction of Precipitation Measurements", Annette Wagner, 2009. The correction parameters for the shielded Hellmann gauge (German version) are from "Wind-induced Precipitation Undercatch of the Hellmann Gauges", Daqing Yang et al, Nordic Hydrology, 30, 1999, pp 57-80.
++
++
++
++
++
++
++ This applies a constant correction factor to the precipitation, one for pure snow and one for mixed precipitation. The following thresholds are used: pure snow below -2 C; mixed precipitation between -2 and +2 C; pure rain above 2 C. These threshold can be changed (see online documentation).
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ Affects resampling: expresses (in seconds) how far a valid point can be
++ searched for when re-interpolating a missing value
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
+\ No newline at end of file
+
+Property changes on: ../trunk-jpl/src/java/doc/examples/snowpack_config.xml
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/doc/examples/issm.xml
+===================================================================
+--- ../trunk-jpl/src/java/doc/examples/issm.xml (revision 0)
++++ ../trunk-jpl/src/java/doc/examples/issm.xml (revision 17993)
+@@ -0,0 +1,1284 @@
++
++
++
++
++
++
++
++ select a mesh dimension 0(default) or 3
++
++
++
++
++
++ number of elements
++
++
++
++ number of verticies
++
++
++
++ vertex indices of the mesh elements
++
++
++
++ vertices x coordinate [m]
++
++
++
++ vertices y coordinate [m]
++
++
++
++ vertices z coordinate [m]
++
++
++
++ edges of the 2d mesh (vertex1 vertex2 element1 element2)
++
++
++
++ number of edges of the 2d mesh
++
++
++
++
++
++
++ mesh dimension
++
++
++
++ number of extrusion layers
++
++
++
++ lower vertices flags list
++
++
++
++ lower elements flags list
++
++
++
++ upper vertices flags list
++
++
++
++ upper element flag list
++
++
++
++ upper vertex list (NaN for vertex on the upper surface)
++
++
++
++ upper element list (NaN for element on the upper layer)
++
++
++
++ lower vertex list (NaN for vertex on the lower surface)
++
++
++
++ lower element list (NaN for element on the lower layer
++
++
++
++ vertices on the boundary of the domain flag list
++
++
++
++ edges on domain boundary (vertex1 vertex2 element)
++
++
++
++ number associated to each segment
++
++
++
++ list of vertices connected to vertex_i
++
++
++
++ list of vertices connected to element_i
++
++
++
++ average number of vertices connected to one vertex
++
++
++
++
++
++
++ vertices extracted from the model
++
++
++
++ elements extracted from the model
++
++
++
++
++
++
++ vertices latitude [degrees]
++
++
++
++ verticies longitude [degrees]
++
++
++
++ Indicate hemisphere 'n' or 's'
++
++
++
++
++
++
++ is ice grounded ? grounded ice if > 0, grounding line position if = 0, floating ice if < 0
++
++
++
++ presence of ice if > 0, icefront position if = 0, no ice if < 0
++
++
++
++
++
++
++
++ surface elevation [m]
++
++
++
++ ice thickness [m]
++
++
++
++ bed elevation [m]
++
++
++
++ bathymetry elevation [m]
++
++
++
++ coefficient for ice shelves; thickness correction: hydrostatic_ratio H_obs+ (1-hydrostatic_ratio) H_hydro
++
++
++
++
++
++
++ gravitational acceleration [m/s^2]
++
++
++
++ number of seconds in a year [s/yr]
++
++
++
++ reference temperature used in the enthalpy model [K]
++
++
++
++
++
++ surface mass balance [m/yr ice eq]
++
++
++
++
++
++ basal melting rate (positive if melting) [m/yr]
++
++
++
++ additional melting applied to compensate for dh/dt [m/yr]
++
++
++
++ geothermal heat flux [W/m^2]
++
++
++
++
++
++ ice density [kg/m^3]
++
++
++
++ ocean water density [kg/m^3]
++
++
++
++ fresh water density [kg/m^3]
++
++
++
++ water viscosity [N s/m^2]
++
++
++
++ heat capacity [J/kg/K]
++
++
++
++ latent heat of fusion [J/kg]
++
++
++
++ ice thermal conductivity [W/m/K]
++
++
++
++ temperate ice thermal conductivity [W/m/K]
++
++
++
++ melting point of ice at 1atm in K
++
++
++
++ rate of change of melting point with pressure [K/Pa]
++
++
++
++ mixed layer capacity [W/kg/K]
++
++
++
++ thermal exchange velocity [m/s]
++
++
++
++ flow law parameter [Pa/s^(1/n)]
++
++
++
++ Glens flow law exponent
++
++
++
++ law for the temperature dependance of the rheology: "None", "Paterson", "Arrhenius" or "LliboutryDuval"
++
++
++
++ Lithosphere shear modulus [Pa]
++
++
++
++ Lithosphere density [g/cm^-3]
++
++
++
++ Mantle shear modulus [Pa]
++
++
++
++ Mantle density [g/cm^-3]
++
++
++
++
++
++
++
++
++
++ damage law (string) from {"undamaged","pralong"}
++
++
++
++ damage tensor (scalar)
++
++
++
++ damage law (string) from {"undamaged","pralong"}
++
++
++
++ damage constraints (NaN means no constraint)
++
++
++
++ maximum possible damage (0<=max_damage<1)
++
++
++
++ 0: no, 1: artificial_diffusivity, 2: SUPG
++
++
++
++ maximum number of non linear iterations
++
++
++
++ stabilize unstable damage constraints that keep zigzagging after n iteration (default is 0, no stabilization)
++
++
++
++ threshold to declare convergence of damage evolution solution (default is 0)
++
++
++
++ scaling exponent (default is 3)
++
++
++
++
++
++
++
++
++ friction coefficient [SI]
++
++
++
++ p exponent
++
++
++
++ q exponent
++
++
++
++
++
++
++
++
++ is the Shallow Ice Approximation (SIA) used ?
++
++
++
++ is the Shelfy-Stream Approximation (SSA) used ?
++
++
++
++ is the L1L2 approximation used ?
++
++
++
++ is the Higher-Order (HO) approximation used ?
++
++
++
++ are the Full-FS (FS) equations used ?
++
++
++
++ Finite Element for SSA "P1", "P1bubble" "P1bubblecondensed" "P2"
++
++
++
++ Finite Element for HO "P1" "P1bubble" "P1bubblecondensed" "P1xP2" "P2xP1" "P2"
++
++
++
++ Finite Element for FS "P1P1" (debugging only) "P1P1GLS" "MINIcondensed" "MINI" "TaylorHood"
++
++
++
++ flow equation for each vertex
++
++
++
++ flow equation for each element
++
++
++
++ vertices on SSAs border (for tiling)
++
++
++
++ vertices on HOs border (for tiling)
++
++
++
++ vertices on FS border (for tiling)
++
++
++
++
++
++
++ simulation starting time [yr]
++
++
++
++ final time to stop the simulation [yr]
++
++
++
++ length of time steps [yr]
++
++
++
++ use cfl condition to define time step ? (0 or 1)
++
++
++
++ coefficient applied to cfl condition
++
++
++
++
++
++
++
++
++ x component of velocity [m/yr]
++
++
++
++ y component of velocity [m/yr]
++
++
++
++ z component of velocity [m/yr]
++
++
++
++ velocity norm [m/yr]
++
++
++
++ pressure field [Pa]
++
++
++
++ fraction of water in the ice
++
++
++
++ ice thickness [m]
++
++
++
++ sediment water head of subglacial system [m]
++
++
++
++ epl water head of subglacial system [m]
++
++
++
++ thickness of subglacial water [m]
++
++
++
++
++
++
++ structure containing all rift information (vertices coordinates, segments, type of melange, ...)
++
++
++
++ N/A
++
++
++
++
++
++
++
++ use Valgrind to debug (0 or 1)
++
++
++
++
++ use gnu-profiler to find out where the time is spent
++
++
++
++
++ enables profiling (memory, flops, time)
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ results are output for all the nodes of each element
++
++
++
++ I/O gathering strategy for result outputs (default 1)
++
++
++
++ is the memory limited ? (0 or 1)
++
++
++
++ frequency at which results are saved in all solutions with multiple time_steps
++
++
++
++ maximum number of minutes to wait for batch results (NaN to deactivate)
++
++
++
++ server hostname where model should be uploaded
++
++
++
++ path on server where model should be uploaded
++
++
++
++ server login
++
++
++
++ port login (default is 0)
++
++
++
++ unique id generated when uploading the file to server
++
++
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++ N/A
++
++
++
++
++
++ thickness constraints (NaN means no constraint) [m]
++
++
++
++ ice thickening rate used in the mass conservation (dh/dt) [m/yr]
++
++
++
++ 0: None, 1: SU, 2: SSAs artificial diffusivity, 3:DG
++
++
++
++
++
++
++
++ mechanical equilibrium residual convergence criterion
++
++
++
++ velocity relative convergence criterion, NaN: not applied
++
++
++
++ velocity absolute convergence criterion, NaN: not applied
++
++
++
++ 0: Picards fixed point, 1: Newtons method, 2: hybrid
++
++
++
++ maximum number of nonlinear iterations
++
++
++
++ over-shooting constant new=new+C*(new-old)
++
++
++
++
++
++
++ x-axis velocity constraint (NaN means no constraint) [m/yr]
++
++
++
++ y-axis velocity constraint (NaN means no constraint) [m/yr]
++
++
++
++ z-axis velocity constraint (NaN means no constraint) [m/yr]
++
++
++
++
++
++
++ threshold for instability of mechanical constraints
++
++
++
++ number of iterations before rift penalties are locked
++
++
++
++
++
++
++ use dampening for floating ice ? Only for FS model
++
++
++
++ multiplier for incompressibility equation. Only for FS model
++
++
++
++ local referential
++
++
++
++ loading force applied on each point [N/m^3]
++
++
++
++ additional outputs requested
++
++
++
++
++
++
++
++
++
++ type of grounding line migration: "SoftMigration","AgressiveMigration" or "None"
++
++
++
++ melting rate applied when previously grounded parts start floating [m/yr]
++
++
++
++
++
++
++
++
++ water thickness constraints (NaN means no constraint) [m]
++
++
++
++ Manning roughness coefficient
++
++
++
++ tortuosity parameter
++
++
++
++ dimensionless exponent in Manning velocity formula
++
++
++
++ dimensionless exponent in Manning velocity formula
++
++
++
++ parameter in effective pressure formula
++
++
++
++ artificial diffusivity (default is 1). can be more than 1 to increase diffusivity.
++
++
++
++
++
++
++
++ thickness constraints (NaN means no constraint) [m]
++
++
++
++ calving rate at given location [m/a]
++
++
++
++ do we use free surfaces (FS only) are mass conservation
++
++
++
++ minimum ice thickness allowed [m]
++
++
++
++ adjustment of ice shelves surface and bed elevations: 'Incremental' or 'Absolute'
++
++
++
++ 0: no, 1: artificial_diffusivity, 2: streamline upwinding, 3: discontinuous Galerkin
++
++
++
++
++
++
++ offset used by penalties: penalty = Kmax*10^offset
++
++
++
++ pairs of vertices that are penalized
++
++
++
++ additional outputs requested
++
++
++
++
++
++
++
++ temperature constraints (NaN means no constraint) [K]
++
++
++
++ 0: no, 1: artificial_diffusivity, 2: SUPG
++
++
++
++ maximum number of non linear iterations
++
++
++
++ stabilize unstable thermal constraints that keep zigzagging after n iteration (default is 0, no stabilization)
++
++
++
++ threshold to declare convergence of thermal solution (default is 0)
++
++
++
++ scaling exponent (default is 3)
++
++
++
++ use an enthalpy formulation to include temperate ice (default is 0)
++
++
++
++ enable dynamic setting of basal forcing. required for enthalpy formulation (default is 0)
++
++
++
++ additional outputs requested
++
++
++
++
++
++
++
++ relative tolerance criterion [K]
++
++
++
++ maximum number of iterations
++
++
++
++ additional requested outputs
++
++
++
++
++
++
++
++ indicates whether a masstransport solution is used in the transient
++
++
++
++ indicates whether a stressbalance solution is used in the transient
++
++
++
++ indicates whether a thermal solution is used in the transient
++
++
++
++ indicates whether a groundingline migration is used in the transient
++
++
++
++ indicates whether a postglacial rebound model is used in the transient
++
++
++
++ indicates whether damage evolution is used in the transient
++
++
++
++ LEVEL SET DESCRIPTION...
++
++
++
++ list of additional outputs requested
++
++
++
++
++
++
++
++ mantle viscosity[Pa s]
++
++
++
++ lithosphere thickness (km)
++
++
++
++ 1: square-edged (default). 2: elliptical. See iedge in GiaDeflectionCore
++
++
++
++
++
++
++
++
++ indicates if the automatic differentiation is activated
++
++
++
++ list of dependent variables
++
++
++
++ list of independent variables
++
++
++
++ ADOLC driver ('fos_forward' or 'fov_forward')
++
++
++
++ Number of operations per buffer (==OBUFSIZE in usrparms.h)
++
++
++
++ Number of locations per buffer (==LBUFSIZE in usrparms.h)
++
++
++
++ Number of values per buffer (==CBUFSIZE in usrparms.h)
++
++
++
++ Number of taylors per buffer (<=TBUFSIZE in usrparms.h)
++
++
++
++ free location block sorting/consolidation triggered if the ratio between allocated and used locations exceeds gcTriggerRatio
++
++
++
++ free location block sorting/consolidation triggered if the allocated locations exceed gcTriggerMaxSize
++
++
++
++
++
++
++
++ name of kml output targets file
++
++
++
++ name of kml input tracks file
++
++
++
++ structure of kml flight requirements (not used yet)
++
++
++
++ element or nodal criterion for flight path evaluation (metric)
++
++
++
++
++
++
++ number of grids at equator (determines resolution)
++
++
++
++
++ flag to consider target values for flight path evaluation
++
++
++
++
++ flag to split polygons on the antimeridian
++
++
++
++
++
++
++
++ optimize? (default false)
++
++
++
++ number of directions to test when moving a point. If this value = 1, a random direction is tested. A value > 1 results in directions equally spaced from [0, 2*PI] being tested. For example, 4 would result in directions [0, PI/2, PI, 3PI/2]
++
++
++
++ specifies the distance in km (default 25) to move a randomly selected path point on each iteration
++
++
++
++ number of iterations (default 30,000) to run for flightplan optimization, i.e. the number of times to randomly select a point and move it.
++
++
++
++
++
++
++ name of kml solution file
++
++
++
++ quality of kml solution
++
++
++
++
++
++
++
++ is inversion activated?
++
++
++
++ 1: linear viscosity, 0: non-linear viscosity
++
++
++
++ ex: {'FrictionCoefficient'}, or {'MaterialsRheologyBbar'}
++
++
++
++ number of optimization searches
++
++
++
++ indicate the type of response for each optimization step
++
++
++
++ cost_functions_coefficients applied to the misfit of each vertex and for each control_parameter
++
++
++
++ misfit convergence criterion. Default is 1%, NaN if not applied
++
++
++
++ maximum iterations during each optimization step
++
++
++
++ scaling factor on gradient direction during optimization, for each optimization step
++
++
++
++ decrease threshold for misfit, default is 30%
++
++
++
++ absolute minimum acceptable value of the inversed parameter on each vertex
++
++
++
++ absolute maximum acceptable value of the inversed parameter on each vertex
++
++
++
++ observed velocity x component [m/yr]
++
++
++
++ observed velocity y component [m/yr]
++
++
++
++ observed velocity magnitude [m/yr]
++
++
++
++ observed thickness [m])
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ is qmu analysis activated?
++
++
++
++ (arrays of each variable class)
++
++
++
++ (arrays of each response class)
++
++
++
++ number of responses
++
++
++
++ (array of method-independent parameters)
++
++
++
++ (information from dakota files)
++
++
++
++ user provided mesh partitioning, defaults to metis if not specified
++
++
++
++ number of partitions for semi-discrete qmu
++
++
++
++
++
++
++
++ use an enthalpy formulation to include temperate ice (default is 0)
++
++
++
++ array of dakota_method class
++
++
++
++ directory for mass flux profiles
++
++
++
++
++
++
++
++
++
++
++
++ additional outputs requested
++
++
++
++ weight applied to each mesh vertex
++
++
++
++
++
++
++
++ list of potential outputs that can be requested, but which need additional data to be defined
++
++
++
++
++
++
++
++ notes in a cell of strings
++
++
++
++ model name
++
++
++
++ empty field to store some data
++
++
++
++
++
+\ No newline at end of file
+
+Property changes on: ../trunk-jpl/src/java/doc/examples/issm.xml
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/doc/examples/min_example.xml
+===================================================================
+--- ../trunk-jpl/src/java/doc/examples/min_example.xml (revision 0)
++++ ../trunk-jpl/src/java/doc/examples/min_example.xml (revision 17993)
+@@ -0,0 +1,40 @@
++
++
++
++
++
++ This is a parameter that asks for a string value and that is present in
++ both the section "section1" and "section2".
++
++
++
++
++
++
++
++
++
++ This parameter belongs to section1.
++ When the "null" option is selected, the dropdown menu appears
++ red because this parameter is non-optional.
++ When the value "ONE" is selected a nested parameter "SOME_INTEGER" appears.
++
++
++
++
++
++
++
++
+\ No newline at end of file
+
+Property changes on: ../trunk-jpl/src/java/doc/examples/min_example.xml
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/lib/miglayout-4.0.jar
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/lib/miglayout-4.0.jar
+===================================================================
+--- ../trunk-jpl/src/java/lib/miglayout-4.0.jar (revision 17992)
++++ ../trunk-jpl/src/java/lib/miglayout-4.0.jar (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/lib/miglayout-4.0.jar
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/MANIFEST.MF
+===================================================================
+--- ../trunk-jpl/src/java/MANIFEST.MF (revision 0)
++++ ../trunk-jpl/src/java/MANIFEST.MF (revision 17993)
+@@ -0,0 +1,14 @@
++Manifest-Version: 1.0
++Ant-Version: Apache Ant 1.8.4
++Created-By: 1.6.0_51-b11-457-11M4509 (Apple Inc.)
++Built-By: larour
++Built-On: 2014-04-14
++Built-At: 14:27:23
++Main-Class: main/GUIBuilder
++Specification-Title: INI file generator
++Specification-Version: 1.0.0-20140414
++Specification-Vendor: SLF, www.slf.ch
++Implementation-Title: INIshell ini creator
++Implementation-Version: 1.0.0
++Implementation-Vendor: SLF, www.slf.ch
++
+Index: ../trunk-jpl/src/java/src/gui_elements/CombinedPanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/CombinedPanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/CombinedPanel.java (revision 17993)
+@@ -0,0 +1,267 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import java.awt.event.ItemEvent;
++import java.text.NumberFormat;
++import java.util.*;
++import java.text.DecimalFormat;
++import java.text.DecimalFormatSymbols;
++
++import javax.swing.JCheckBox;
++import javax.swing.JComponent;
++import javax.swing.JFormattedTextField;
++import javax.swing.JTextField;
++import javax.swing.JLabel;
++import javax.swing.JComboBox;
++
++import main.XMLHelper;
++
++import org.w3c.dom.Element;
++import org.w3c.dom.Node;
++import org.w3c.dom.NodeList;
++import net.miginfocom.swing.MigLayout;
++
++/**
++ * @brief The CombinedPanel may contain other panels, such as check and drop down boxes and text fields
++ *
++ * @author Thomas Egger
++ */
++public class CombinedPanel extends OptionPanel {
++ enum Type { CHOICE, INTEGER, DECIMAL, STRING, DROPDOWN }
++
++ /**
++ *
++ */
++ private static final long serialVersionUID = -6751282938445852408L;;
++
++ private final LinkedList valueComponents;
++
++ /**
++ * Constructor for a panel that can hold text, numbers and check boxes. It
++ * corresponds to the parameter type "combination" in the configuration file
++ * and its subcomponents correspond to the option values.
++ *
++ * @param element
++ * @throws GUIBuildException
++ */
++ public CombinedPanel(Element element, ControlledPanel parent) throws GUIBuildException {
++ super(element, parent, false); //doing layout by itself
++
++ //System.out.println("Hierarchy: Parent: " + parent.getKey() + ": "+ parent.getHierarchy() + " own: " + getHierarchy());
++
++ int column1 = 200;
++ column1 -= getHierarchy() * 5;
++ this.setLayout(new MigLayout("gapx 6, wrap 8, ins n 5 n n", "["+column1+"!][78!][78!][78!][78!][78!][78!][20!][200:400:400]", ""));
++
++ this.add(jlabel, "gapleft " + getHierarchy() * 5);
++ this.add(help, "cell 8 0, wrap");
++
++ valueComponents = new LinkedList();
++
++ final Element[] optionElements = XMLHelper.getElementArray(element, "option");
++
++ byte lblcounter = 0;
++
++ DecimalFormat format = (DecimalFormat)DecimalFormat.getInstance();
++ DecimalFormatSymbols custom = new DecimalFormatSymbols();
++ custom.setDecimalSeparator('.');
++ format.setDecimalFormatSymbols(custom);
++ format.setGroupingUsed(false);
++
++ DecimalFormat integerFormat = (DecimalFormat)DecimalFormat.getIntegerInstance();
++ integerFormat.setGroupingUsed(false);
++
++ int row = 0;
++ int column = 1;
++
++ for (int i=0;i 12) width = 2; //for oversize labels
++
++ if (column+width >= 7) {
++ column = 1;
++ row++;
++ }
++ lblcomponent = new JLabel(label);
++ valueComponents.add(lblcomponent);
++
++ //System.out.println("component: " + component.getClass() + ");
++ //System.out.println("component: " + lblcomponent.getClass() + " size: " + lblcomponent.getWidth() + " col: " + column + " row: " + row);
++ this.add(lblcomponent, "cell " + column + " " + row + " " + width + " 1");
++ column += width;
++ width = 1;
++ lblcomponent.setVisible(true);
++ }
++
++ if (column >= 7) {
++ column = 1;
++ row++;
++ }
++ //System.out.println("component: " + component.getClass() + " size: " + component.getWidth() + " col: " + column + " row: " + row);
++ this.add(component, "cell " + column + " " + row + " " + width + " 1");
++ column++;
++
++ valueComponents.add(component);
++ component.setVisible(true);
++ }
++
++ //System.out.println("\t-->Instantiated one Combined Panel with " + optionElements.length + " components");
++ }
++
++ @Override
++ public void close() {
++ // TODO Auto-generated method stub
++
++ }
++
++ @Override
++ public void set(HashMap hm, String inkey, String invalue) {
++ if (!hm.containsKey(hashKey)) return;
++ String val = (String)hm.get(hashKey);
++
++ //System.out.println("\tSetting CombinedPanel: " + hashKey + " = " + val);
++ //System.out.println("\tThis CombinedPanel has the key: " + this.getKey() + " should be: " + inkey + " val: " + invalue);
++
++ //Now loop through valueComponents and see if the value string can be matched
++ if (val == null) return;
++
++ String[] tokens = val.split("\\s+");
++ int counter = 0;
++
++ //System.out.println("\t\tLooking at VAL param: " + val);
++ for (final JComponent comp : valueComponents) {
++ boolean digested = false;
++ if (tokens.length <= counter) break;
++ //System.out.println("\t\tLooking at USER param: " + tokens[counter]);
++
++ if (comp.getClass() == JCheckBox.class) {
++ String cbString = ((JCheckBox) comp).getText();
++ if (tokens[counter].equals(cbString)) {
++ ((JCheckBox) comp).setSelected(true);
++ digested = true;
++ }
++ } else if (comp.getClass() == JComboBox.class) {
++ JComboBox box = (JComboBox) comp;
++
++ for (int ii=0; ii 0)
++ value += " ";
++ }
++
++ if (value.equals("")) return null;
++ else return value;
++ }
++
++ @Override
++ public void itemStateChanged(ItemEvent arg0) {
++ String selectedOption = null;
++
++ if (arg0.getItemSelectable().getClass() == JCheckBox.class) {
++ selectedOption = ((JCheckBox) arg0.getItemSelectable()).getText();
++ super.handleItemEvent(arg0, selectedOption);
++ } else if (arg0.getItemSelectable().getClass() == JComboBox.class) {
++ selectedOption = ((String)((JComboBox)arg0.getItemSelectable()).getSelectedItem());
++ //HACK: should call super...
++ }
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/CombinedPanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/SelectorPanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/SelectorPanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/SelectorPanel.java (revision 17993)
+@@ -0,0 +1,233 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++ *
++ * INIshell is free software: you can redistribute it and/or modify
++ * it under the terms of the GNU General Public License as published by
++ * the Free Software Foundation, either version 3 of the License, or
++ * (at your option) any later version.
++ *
++ * INIshell is distributed in the hope that it will be useful,
++ * but WITHOUT ANY WARRANTY; without even the implied warranty of
++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++ * GNU General Public License for more details.
++ *
++ * You should have received a copy of the GNU General Public License
++ * along with INIshell. If not, see .
++ *
++ */
++
++package gui_elements;
++
++import java.awt.event.ActionEvent;
++import java.awt.event.ActionListener;
++
++import javax.swing.JButton;
++import javax.swing.JOptionPane;
++
++
++import main.GUIBuilder;
++import main.XMLHelper;
++
++import org.w3c.dom.Element;
++import org.w3c.dom.Node;
++import org.w3c.dom.NodeList;
++
++import java.util.List;
++import java.util.ArrayList;
++import java.util.HashMap;
++
++/**
++ * This class introduces more flexibility into the inishell interface:
++ * The SelectorPanel offers the user to add a specific parameter to
++ * the interface.
++ *
++ * @author Thomas Egger
++ */
++public class SelectorPanel extends ControlledPanel implements ActionListener {
++
++ private static final long serialVersionUID = 8610877538909126920L;
++
++ String[] parameters;
++
++ JButton addButton;
++ JButton removeButton;
++ Element template;
++ String templateKey;
++ HashMap mapOfParameters;
++ ControlledPanel cp = null;
++
++ public SelectorPanel(Element element, ControlledPanel parent) {
++ super(element, parent);
++ templateKey = ""; //will store the pattern of the key
++
++ addButton = new JButton("+");
++ this.add(addButton, "cell 1 0, split 2, grow");
++ addButton.addActionListener(this);
++
++ removeButton = new JButton("-");
++ this.add(removeButton, "cell 1 0, grow, wrap");
++ removeButton.addActionListener(this);
++
++ //The following lines try to extract the template key (e.g. %::filters#, %::resample, COPY::%)
++ final NodeList nodelist = element.getChildNodes();
++ for (int ii = 0; ii < nodelist.getLength(); ii++) {
++ if (nodelist.item(ii).getNodeType() == Node.ELEMENT_NODE) {
++ Element currentElement = (Element)nodelist.item(ii);
++ if (currentElement.getAttribute("template").equals("true")){
++ template = (Element)currentElement.cloneNode(true);
++ templateKey = template.getAttribute("key");
++ template.setAttribute("template", "false");
++ }
++ }
++ }
++
++ final Element[] options = XMLHelper.getElementArray(element, "option");
++ parameters = new String[options.length + 1];
++ for (int ii=0; ii < options.length; ii++) {
++ parameters[ii] = options[ii].getAttribute("value");
++ }
++ parameters[options.length] = "Other...";
++
++ key = templateKey; //IMPORTANT: this changes the key only, not the label!
++ hashKey = this.getSection().toUpperCase() + "::" + this.getKey().toUpperCase();
++ mapOfParameters = new HashMap();
++ }
++
++ @Override
++ public void actionPerformed(ActionEvent arg0) {
++ if (arg0.getSource() == addButton) {
++ add();
++ } else if (arg0.getSource() == removeButton) {
++ remove();
++ }
++ }
++
++ @Override
++ public void set(HashMap hm, String key, String value) {
++ //HACK
++ //System.out.println("\tKEY: " + key + " VAL: " + value);
++
++ String myKey = this.section.toUpperCase() + "::" + templateKey.toUpperCase().replace("%","([a-zA-Z0-9_]+)");
++ myKey = myKey.replace("#","[1-9]+[0-9]*"); //all integer numbers from 1 to infinity
++ //System.out.println("PATTERN: " + myKey);
++ String myKey2 = key.replaceAll(myKey, "$1");
++ String myKey3 = key.replaceAll(myKey, "$0");
++
++ //System.out.println("HUHUI: " + templateKey + " --- " + myKey2 + " -- " + myKey3);
++
++ boolean toAdd = true;
++ if (mapOfParameters.get(myKey2) != null) toAdd = false; //Parameter already exists
++
++ if (toAdd) {
++ ControlledPanel child = add(myKey2, true, hm, key, value);
++ cp = child;
++ if (child != null) child.set(hm, key, value);
++ } else {
++ if (cp != null) cp.set(hm, key, value);
++ }
++ }
++
++ public void add() {
++ String param = "";
++ String choice = "Other...";
++
++ if (parameters.length > 1)
++ choice = (String)JOptionPane.showInputDialog(this, "Add a parameter", "Add", JOptionPane.QUESTION_MESSAGE, null, parameters, null);
++
++ if (choice == null) return;
++
++ if (choice.equals("Other...")) {
++ param = JOptionPane.showInputDialog(this, "Enter the name of a meteo parameter\n(e.g. VW_AVG, P2");
++ } else {
++ param = choice;
++ }
++
++ add(param, false, null, null, null);
++ }
++
++ public ControlledPanel add(String param, boolean doSet, HashMap hm, String key, String value) {
++ //System.out.println("Trying to add SelectorPanel: " + key + " ... " + value);
++
++ if ((param == null) || (param.length() == 0)) return null;
++ param = param.toUpperCase();
++
++ if (mapOfParameters.get(param) != null) return null; //Parameter already exists
++
++ Element child = (Element)template.cloneNode(true);
++ recursiveKeyReplace(child, param);
++ element.appendChild(child);
++
++ ControlledPanel childPanel = null;
++ try {
++ childPanel = ControlledPanel.createSingleParameterPanel(child, this);
++ childPanel.setKey(childPanel.getKey());
++ GUIBuilder.gui.addToTab(childPanel, section, this);
++ childPanel.hold();
++ GUIBuilder.control(childPanel);
++ GUIBuilder.recursiveBuild(child, this, doSet, hm, key, value);
++
++ mapOfParameters.put(param, childPanel);
++ } catch (final GUIBuildException e1) {
++ e1.printStackTrace();
++ }
++
++ this.invalidate();
++
++ return childPanel;
++ }
++
++ @Override
++ public void close() {
++
++ }
++
++ @Override
++ public String getValue() {
++ return null;
++ }
++
++ public void remove() {
++ if (mapOfParameters.size() == 0) return;
++
++ String choice = (String)JOptionPane.showInputDialog(this, "Remove a parameter", "Remove", JOptionPane.QUESTION_MESSAGE, null, mapOfParameters.keySet().toArray(), null);
++
++ if (choice == null) return; //nothing to do
++
++ String childKey = templateKey.replaceAll("%", choice);
++ final Element child = XMLHelper.getCertainChildElement(element, "parameter", "key", childKey);
++
++ if (child == null) return;
++
++ try { //this makes sure that all child nodes are destroyed
++ GUIBuilder.recursiveDestruct(child, this);
++ element.removeChild(child);
++ final ControlledPanel childPanel = GUIBuilder.panelControl.get(section, childKey);
++
++ childPanel.release();
++ childPanel.close();
++
++ if (!childPanel.isNeeded())
++ GUIBuilder.gui.removeFromTab(childPanel, section, this);
++
++ mapOfParameters.remove(choice);
++ } catch (final GUIBuildException e) {
++ e.printStackTrace();
++ }
++
++ this.invalidate();
++ }
++
++ private void recursiveKeyReplace(Element element, String string) {
++ if (element.hasAttribute("key"))
++ element.setAttribute("key", element.getAttribute("key").replaceAll("%", string));
++
++ final NodeList nodelist = element.getChildNodes();
++ for (int i = 0; i < nodelist.getLength(); i++) {
++ if (nodelist.item(i).getNodeType() == Node.ELEMENT_NODE) {
++ recursiveKeyReplace(((Element) nodelist.item(i)), string);
++ }
++ }
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/SelectorPanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/GUIBuildException.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/GUIBuildException.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/GUIBuildException.java (revision 17993)
+@@ -0,0 +1,33 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++public class GUIBuildException extends Exception {
++
++ /**
++ *
++ */
++ private static final long serialVersionUID = 1L;
++
++ public GUIBuildException(String message) {
++ super(message);
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/GUIBuildException.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/ControlledPanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/ControlledPanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/ControlledPanel.java (revision 17993)
+@@ -0,0 +1,285 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import java.awt.Color;
++import java.awt.Component;
++import java.awt.Font;
++
++import javax.swing.JEditorPane;
++import javax.swing.JLabel;
++import javax.swing.JPanel;
++import javax.swing.JSeparator;
++import javax.swing.*;
++import java.util.HashMap;
++import javax.swing.border.*;
++
++import main.GUI;
++import main.GUIBuilder;
++import main.XMLHelper;
++import net.miginfocom.swing.MigLayout;
++
++import org.w3c.dom.Element;
++import org.w3c.dom.Node;
++
++/**
++ * Abstract class for JPanels that are maintained with their key and designated
++ * section and can return their current value.
++ */
++public abstract class ControlledPanel extends JPanel {
++
++ private static final long serialVersionUID = 1L;
++
++ private int dependencies;
++
++ protected JLabel jlabel;
++
++ protected String section;
++ protected String key;
++ protected String label;
++ protected String hashKey;
++
++ protected Element element;
++
++ protected boolean optional;
++ protected String replace;
++
++ protected int hierarchy;
++ protected String helptext;
++ protected JEditorPane help;
++
++ /**
++ * Constructor for a controlled panel.
++ *
++ * @param element
++ */
++ public ControlledPanel(Element element, ControlledPanel parent) {
++ this(element, parent, true);
++ }
++
++ public ControlledPanel(Element element, ControlledPanel parent, boolean doLayout) {
++ super();
++ initialize(element, parent);
++
++ if (doLayout) {
++ int column1 = 200;
++ column1 -= getHierarchy() * 5; //Indentation for the label, 5px per hierarchy level
++
++ setLayout(new MigLayout("gapx 6, wrap 8, top, ins n 5 n n", "["+ column1 + "!][100!][100!][100!][100!][100!][300:400:400]", ""));
++ add(jlabel, "growx, ay top, gaptop 5, gapleft " + getHierarchy() * 5);
++ add(help, "cell 6 0, wrap");
++ }
++ }
++
++ private void initialize(Element element, ControlledPanel parent) {
++ dependencies = 0;
++
++ this.element = element;
++ this.key = element.getAttribute("key");
++ this.label = this.key;
++
++ this.section = element.getAttribute("section");
++ this.hashKey = this.section.toUpperCase() + "::" + this.key.toUpperCase();
++ this.optional = element.getAttribute("optional").equals("true");
++
++ jlabel = new JLabel(this.label + ": ");
++ jlabel.setForeground(GUI.LABEL_COLOR);
++
++ this.setBackground(Color.white);
++ this.setVisible(true);
++
++ /* Add help to the right side of the panel. */
++ helptext = XMLHelper.getChildElementContent(element, "help");
++ help = ControlledPanel.createHelpPane(""+helptext+"");
++ if (helptext != null) help.setText(helptext);
++
++ if (parent != null) {
++ setHierarchy(parent.getHierarchy() + 1);
++ } else {
++ setHierarchy(0);
++ }
++ }
++
++ /**
++ * Creates a ControlledPanel for a parameter that matches its type. (i.e.
++ * radio buttons for an option parameter, ...
++ *
++ * @param element
++ * @return the Controlled Panel
++ * @throws GUIBuildException
++ */
++ public static ControlledPanel createSingleParameterPanel(Element element, ControlledPanel parent) throws GUIBuildException {
++ ControlledPanel panel;
++
++ //System.out.println("IN create: " + XMLHelper.getString((Node)element));
++
++ if (element.hasAttribute("counter")) {
++ panel = new DuplicatorPanel(element, parent);
++ } else if (element.getTagName().equals("frame")) {
++ panel = new FramePanel(element, parent);
++ } else if (element.getAttribute("type").equals("path") || element.getAttribute("type").equals("file")) {
++ panel = new PathPanel(element, parent);
++ } else if (element.getAttribute("type").equals("alternative") || element.getAttribute("type").equals("logical")) {
++ panel = new AlternativePanel(element, parent);
++ } else if (element.getAttribute("type").equals("choice")) {
++ panel = new CheckBoxPanel(element, parent);
++ } else if (element.getAttribute("type").equals("integer") || element.getAttribute("type").equals("integer+")){
++ panel = new IntegerPanel(element, parent);
++ } else if (element.getAttribute("type").equals("decimal")) {
++ panel = new DecimalPanel(element, parent);
++ } else if (element.getAttribute("type").equals("double")) {
++ panel = new TextfieldPanel(element, parent);
++ } else if (element.getAttribute("type").equals("string") || element.getAttribute("type").equals("char") || element.getAttribute("type").equals("cell")){
++ panel = new TextfieldPanel(element, parent);
++ } else if (element.getAttribute("type").equals("combination")) {
++ panel = new CombinedPanel(element, parent);
++ } else if (element.getAttribute("type").equals("selector")) {
++ panel = new SelectorPanel(element, parent);
++ } else {
++ throw new GUIBuildException("Cannot create a GUI panel for a parameter of type " + element.getAttribute("type"));
++ }
++
++ return panel;
++ }
++
++ public static JEditorPane createHelpPane(String helptext){
++ JEditorPane help = new JEditorPane();
++ help.putClientProperty(JEditorPane.HONOR_DISPLAY_PROPERTIES, Boolean.TRUE);
++ help.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 12));
++ help.setEditable(false);
++ help.setContentType("text/html");
++ help.setForeground(Color.GRAY);
++ help.addHyperlinkListener(GUIBuilder.gui);
++
++ if (helptext!=null) {
++ help.setText(""+helptext+"");
++ } else {
++ help.setText("");
++ }
++
++ return help;
++ }
++
++ public void setHierarchy(int val) {
++ hierarchy = val;
++ }
++
++ public int getHierarchy() {
++ return hierarchy;
++ }
++
++ /**
++ * This method should be called when the panel is removed.
++ */
++ public abstract void close();
++
++ /**
++ * @return the GUI component.
++ */
++ public Component getComponent() {
++ return this;
++ }
++
++ /**
++ * @return the number of dependencies on the panel.
++ */
++ public int getDependencies() {
++ return dependencies;
++ }
++
++ /**
++ * @return the key of the corresponding key / value set
++ */
++ public String getKey() {
++ return key;
++ }
++
++ /**
++ * @return the current value of the key / value set null if the key value
++ * set should not be printed
++ */
++ public abstract String getValue();
++
++ /**
++ * This method should be called when another panel depends needs this panel
++ * to exist.
++ */
++ public synchronized void hold() {
++ this.dependencies++;
++ }
++
++ /**
++ * @return true if dependencies on this panel exist
++ * @throws GUIBuildException
++ */
++ public synchronized boolean isNeeded() throws GUIBuildException {
++ if (dependencies == 0) {
++ return false;
++ } else if (dependencies > 0) {
++ return true;
++ } else {
++ throw new GUIBuildException("Inplausible number of dependencies on panel");
++ }
++ }
++
++ /**
++ * @return true if a value for the underlying parameter is optional
++ */
++ public boolean isOptional() {
++ return optional;
++ }
++
++ /**
++ * This method should be called when a panel no longer needs this panel to
++ * exist. The panel will be removed if no dependency exists.
++ */
++ public synchronized void release() {
++ this.dependencies--;
++ }
++
++ public void set(HashMap hm, String key, String value) {
++ System.out.println("Set not implemented for ControlledPanel: " + serialVersionUID);
++ }
++
++ public String getHashKey() {
++ return hashKey;
++ }
++
++ /**
++ * This method sets a new key for a panel and changes its label.
++ *
++ * @param key
++ * the new key
++ */
++ public void setKey(String key) {
++ this.key = key;
++ element.setAttribute("key", key);
++ jlabel.setText(this.label + ": ");
++ }
++
++ /**
++ * Getter method for the section.
++ * @return the section
++ */
++ public String getSection() {
++ return section;
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/ControlledPanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/CheckBoxPanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/CheckBoxPanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/CheckBoxPanel.java (revision 17993)
+@@ -0,0 +1,139 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import main.*;
++
++import java.awt.Color;
++import java.awt.event.ItemEvent;
++import java.util.HashMap;
++
++import javax.swing.JCheckBox;
++import javax.swing.JOptionPane;
++import javax.swing.JLabel;
++
++import org.w3c.dom.Element;
++import org.w3c.dom.Node;
++
++public class CheckBoxPanel extends OptionPanel {
++
++ private static final long serialVersionUID = 552186457208697362L;
++ private final JCheckBox[] boxes;
++ String concat;
++ private String setKey = null, setValue = null;
++ private boolean doSet = false;
++ private HashMap setMap;
++
++
++ /**
++ * Constructor for a panel that can hold a number of checkboxes to compose
++ * the value for a key/value set.
++ *
++ * @param element
++ * @throws GUIBuildException
++ */
++ public CheckBoxPanel(Element element, ControlledPanel parent) throws GUIBuildException {
++ super(element, parent);
++
++ concat = "";
++ boxes = new JCheckBox[values.length];
++ for (int i = 0; i < values.length; i++) {
++ boxes[i] = new JCheckBox(values[i]);
++
++ this.add(boxes[i], "cell 1 " + i + ", wrap, ay top");
++
++ String extra = "";
++ if (i > 0)
++ extra = ", gapleft 12";
++
++ this.add(ControlledPanel.createHelpPane(this.helptexts[i]), "cell 6 "+ i +", width 200:400:400, wrap" + extra);
++
++ boxes[i].setBackground(Color.white);
++ boxes[i].setVisible(true);
++ boxes[i].addItemListener(this);
++ if (defaultTrues.contains(values[i])) {
++ boxes[i].setSelected(true);
++ concat += values[i] + " ";
++ }
++ }
++ }
++
++ @Override
++ public void close() {
++ for (final JCheckBox box : boxes)
++ box.setSelected(false);
++ }
++
++ @Override
++ public String getValue() {
++ if (!isOptional() && concat.equals("")) {
++ JOptionPane.showMessageDialog(null, "No option was selected for "
++ + getKey() + " (section '" + getSection().toUpperCase() + "')"
++ + ".\nA value is required. Your .ini-file is probably incorrect.",
++ "Problem when building .ini file",
++ JOptionPane.WARNING_MESSAGE);
++ }
++
++ if (concat.equals("")) return null;
++ else return concat.trim();
++ }
++
++ public synchronized void set(HashMap hm, String key, String value) {
++ String val = ((String)hm.get(hashKey)).toUpperCase();
++ //System.out.println("\tABOUT TO CHANGE CHECKBOXPANEL KEY: " + key + " VAL: " + val);
++
++ String[] tokens = val.split("\\s+");
++ for (final JCheckBox box : boxes) {
++ box.setSelected(false);
++
++ for (final String token : tokens) {
++ if (token.equals(box.getText())) {
++ //System.out.println("\t\tSelecting Checkbox: " + token);
++ doSet = true;
++ setKey = key;
++ setValue = value;
++ setMap = hm;
++ box.setSelected(true);
++ }
++ }
++ }
++ }
++
++
++ @Override
++ public synchronized void itemStateChanged(ItemEvent arg0) {
++ final String selectedOption = ((JCheckBox) arg0.getItemSelectable()).getText();
++
++ if (arg0.getStateChange() == ItemEvent.SELECTED) {
++ concat += selectedOption + " ";
++ } else {
++ concat = concat.replaceAll(new String(" " + selectedOption + " "), " ");
++ concat = concat.replaceFirst(new String("^" + selectedOption + " "), ""); //at the beginning of the concat
++ }
++
++ //super.handleItemEvent(arg0, selectedOption);
++ super.handleItemEvent(arg0, selectedOption, doSet, setMap, setKey, setValue);
++ doSet = false;
++ setKey = null;
++ setMap = null;
++ setValue = null;
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/CheckBoxPanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/DuplicatorPanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/DuplicatorPanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/DuplicatorPanel.java (revision 17993)
+@@ -0,0 +1,175 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import java.awt.event.ActionEvent;
++import java.awt.event.ActionListener;
++import java.util.*;
++
++import javax.swing.JButton;
++
++import main.GUIBuilder;
++import main.XMLHelper;
++
++import org.w3c.dom.Element;
++import org.w3c.dom.Node;
++import org.w3c.dom.NodeList;
++
++public class DuplicatorPanel extends ControlledPanel implements ActionListener {
++
++ /**
++ *
++ */
++ private static final long serialVersionUID = 6801877538909126920L;
++ JButton addButton;
++ Element clone;
++
++ JButton removeButton;
++
++ public DuplicatorPanel(Element element, ControlledPanel parent) {
++ super(element, parent);
++
++ addButton = new JButton("+");
++ this.add(addButton, "cell 1 0, split 2, grow");
++ addButton.addActionListener(this);
++
++ removeButton = new JButton("-");
++ this.add(removeButton, "cell 1 0, grow, wrap");
++ removeButton.addActionListener(this);
++
++ clone = (Element) element.cloneNode(true);
++ clone.removeAttribute("counter");
++ clone.setAttribute("counted", "true");
++ }
++
++ @Override
++ public void actionPerformed(ActionEvent arg0) {
++ if (arg0.getSource() == addButton) {
++ add();
++ } else if (arg0.getSource() == removeButton) {
++ remove();
++ }
++ }
++
++ @Override
++ public void set(HashMap hm, String key, String value) {
++ //System.out.println("Trying to add DUPLICATOR Panel: " + key + " ... " + value + " HashKey: " + this.getHashKey());
++
++ if (key.indexOf('#') == -1) {
++ ControlledPanel child = add(true, hm, key, value);
++ child.set(hm, key, value);
++ }
++ }
++
++ public ControlledPanel add() {
++ return add(false, null, null, null);
++ }
++
++ public ControlledPanel add(boolean doSet, HashMap hm, String key, String value) {
++
++ final Element child = (Element) this.clone.cloneNode(true);
++ final int counter = Integer.parseInt(element.getAttribute("counter"));
++ element.setAttribute("counter", (counter + 1) + "");
++
++ // child.setAttribute("key",element.getAttribute("key").replaceAll("#",counter+""));
++
++ //System.out.println("\t-->Adding a child panel to DUPLICATOR with key: " + key + " val: " + value + " HASH: " + this.getHashKey() + " hier: " + this.getHierarchy());
++
++ recursiveKeyReplace(child, counter + "");
++ element.appendChild(child);
++
++ ControlledPanel childPanel = null;
++ try {
++ childPanel = ControlledPanel.createSingleParameterPanel(child, this);
++ childPanel.setKey(childPanel.getKey());
++ GUIBuilder.gui.addToTab(childPanel, section, this);
++ childPanel.hold();
++ GUIBuilder.control(childPanel);
++ GUIBuilder.recursiveBuild(child, this, doSet, hm, key, value);
++
++ } catch (final GUIBuildException e1) {
++ // TODO Auto-generated catch block
++ e1.printStackTrace();
++ }
++
++ this.invalidate();
++
++ return childPanel;
++ }
++
++ @Override
++ public void close() {
++ boolean doRemove = true;
++
++ do {
++ doRemove = remove();
++ } while (doRemove);
++ }
++
++ @Override
++ public String getValue() {
++ return null;
++ }
++
++ public boolean remove() {
++ final int counter = Integer.parseInt(element.getAttribute("counter")) - 1;
++ final String childKey = element.getAttribute("key").replace("#", counter + "");
++ final Element child = XMLHelper.getCertainChildElement(element, "parameter", "key", childKey);
++
++ if (child == null) return false;
++
++ element.removeChild(child);
++ element.setAttribute("counter", (counter) + "");
++
++ final ControlledPanel childPanel = GUIBuilder.panelControl.get(section, childKey);
++
++ if (childPanel != null) {
++ childPanel.release();
++ childPanel.close();
++
++ try {
++ if (!childPanel.isNeeded()) {
++ GUIBuilder.gui.removeFromTab(childPanel, section, this);
++ }
++ } catch (final GUIBuildException e) {
++ // TODO Auto-generated catch block
++ e.printStackTrace();
++ }
++ }
++
++ this.invalidate();
++
++ return true;
++ }
++
++ private void recursiveKeyReplace(Element element, String string) {
++ if (element.hasAttribute("key")) {
++ element.setAttribute("key", element.getAttribute("key").replaceAll("#", string));
++ }
++ final NodeList nodelist = element.getChildNodes();
++ for (int i = 0; i < nodelist.getLength(); i++) {
++ if (nodelist.item(i).getNodeType() == Node.ELEMENT_NODE) {
++ recursiveKeyReplace(((Element) nodelist.item(i)), string);
++ }
++ }
++ }
++
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/DuplicatorPanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/OptionPanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/OptionPanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/OptionPanel.java (revision 17993)
+@@ -0,0 +1,144 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import java.awt.event.ItemEvent;
++import java.awt.event.ItemListener;
++import java.util.LinkedList;
++import java.util.HashMap;
++import javax.swing.event.EventListenerList;
++
++import main.GUIBuilder;
++import main.XMLHelper;
++
++import org.w3c.dom.Element;
++import org.w3c.dom.Node;
++
++/**
++ * A ControlledPanel that maintains a group of choices and invokes panel
++ * creation according to the current choices.
++ *
++ * @author korhammer et egger
++ *
++ */
++public abstract class OptionPanel extends ControlledPanel implements ItemListener {
++
++ private static final long serialVersionUID = 88L;
++
++ protected LinkedList defaultTrues;
++ protected EventListenerList listenerList;
++
++ protected String[] values;
++ protected String[] labels;
++ protected String[] helptexts;
++
++ /**
++ * The constructor for an OptionPanel.
++ *
++ * @param element
++ * : The xml element which the OptionPanel is created for.
++ * @throws GUIBuildException
++ */
++ public OptionPanel(Element element, ControlledPanel parent) throws GUIBuildException {
++ this(element, parent, true);
++ }
++
++ public OptionPanel(Element element, ControlledPanel parent, boolean doLayout) throws GUIBuildException {
++ super(element, parent, doLayout);
++
++ String elementdefault = "";
++
++ if (element.hasAttribute("default"))
++ elementdefault = element.getAttribute("default");
++
++ listenerList = new EventListenerList();
++
++ final Element[] options = XMLHelper.getElementArray(element, "option");
++ defaultTrues = new LinkedList();
++
++ values = new String[options.length];
++ labels = new String[options.length];
++ helptexts = new String[options.length];
++
++ for (int i=0;i.
++*
++*/
++
++package gui_elements;
++
++import main.GUI;
++
++import java.awt.*;
++import java.awt.event.*;
++import java.util.HashMap;
++
++import javax.swing.JTextField;
++import javax.swing.JOptionPane;
++
++import org.w3c.dom.Element;
++
++/**
++ * A panel that contains a textfield.
++ *
++ * @author korhammer et egger
++ *
++ */
++public class TextfieldPanel extends ControlledPanel implements KeyListener {
++
++ private static final long serialVersionUID = 1L;
++ private String defaultText;
++
++ protected JTextField textfield;
++
++ /**
++ * The constructor for a TextfieldPanel.
++ *
++ * @param element
++ */
++ public TextfieldPanel(Element element, ControlledPanel parent) {
++ super(element, parent);
++ textfield = new JTextField(10);
++ textfield.setVisible(true);
++ this.add(textfield, "width 250:100:400, cell 1 0, growx, ay top, gaptop 3");
++ textfield.addKeyListener(this);
++
++ defaultText = "";
++ if (element.hasAttribute("default")) {
++ defaultText = element.getAttribute("default");
++ }
++ textfield.setText(defaultText);
++
++ if (!optional)
++ textfield.setBackground(GUI.WARNING_BACKGROUND_COLOR);
++
++ this.checkBgColor();
++ textfield.invalidate();
++ }
++
++
++
++ @Override
++ public void close() {
++ // TODO Auto-generated method stub
++
++ }
++
++ @Override
++ public void set(HashMap hm, String key, String value) {
++ //System.out.println("\tI'm changing the label of the TextField with key '" + this.getKey() + "'");
++ String val = (String)hm.get(hashKey);
++ if (val != null) textfield.setText(val);
++ this.checkBgColor();
++ }
++
++ @Override
++ public String getValue() {
++ String thetext = textfield.getText();
++
++ if (!isOptional() && thetext.equals("")) {
++ JOptionPane.showMessageDialog(null, "No value was entered for "
++ + getKey() + " (section '" + getSection().toUpperCase() + "')"
++ + ".\nA value is required. Your .ini-file is probably incorrect.",
++ "Problem when building .ini file",
++ JOptionPane.WARNING_MESSAGE);
++ }
++
++ if (thetext.equals(""))
++ return null;
++
++ return thetext;
++ }
++
++ /** Handle the key typed event from the text field. */
++ public void keyTyped(KeyEvent e) {}
++
++ /** Handle the key-pressed event from the text field. */
++ public void keyPressed(KeyEvent e) {}
++
++ /** Handle the key-released event from the text field. */
++ public void keyReleased(KeyEvent e) {
++ checkBgColor();
++ }
++
++ public void checkBgColor() {
++ String text = textfield.getText();
++
++ if (!optional) {
++ if (text.length() > 0) {
++ textfield.setBackground(GUI.NORMAL_BACKGROUND_COLOR);
++ } else {
++ textfield.setBackground(GUI.WARNING_BACKGROUND_COLOR);
++ }
++ textfield.invalidate();
++ }
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/TextfieldPanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/FramePanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/FramePanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/FramePanel.java (revision 17993)
+@@ -0,0 +1,71 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import main.GUIBuilder;
++import main.XMLHelper;
++
++import java.util.HashMap;
++import javax.swing.JPanel;
++import javax.swing.border.*;
++import javax.swing.BorderFactory;
++
++import org.w3c.dom.Element;
++import org.w3c.dom.Node;
++import org.w3c.dom.NodeList;
++import net.miginfocom.swing.MigLayout;
++
++public class FramePanel extends ControlledPanel {
++
++ private static final long serialVersionUID = 1987664773406118295L;
++ protected String title = "";
++
++ /**
++ *
++ *
++ * @param element
++ * @throws GUIBuildException
++ */
++ public FramePanel(Element element, ControlledPanel parent) throws GUIBuildException {
++ super(element, parent, false);
++ this.setLayout(new MigLayout("wrap 8, top, ins n 5 n n", "[200!][100!][100!][100!][100!][100!][300:400:400]", ""));
++
++ if (parent == null) hierarchy = 1;
++
++ title = element.getAttribute("label");
++
++ Border mytitledborder = BorderFactory.createTitledBorder(title);
++ //Border loweredetched = BorderFactory.createEtchedBorder(EtchedBorder.LOWERED);
++ this.setBorder(mytitledborder);
++
++ this.invalidate();
++ }
++
++ @Override
++ public String getValue() {
++ return null;
++ }
++
++ @Override
++ public void close() {
++
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/FramePanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/PathPanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/PathPanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/PathPanel.java (revision 17993)
+@@ -0,0 +1,118 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import java.awt.event.ActionEvent;
++import java.awt.event.ActionListener;
++import java.util.HashMap;
++
++import javax.swing.JButton;
++import javax.swing.JFileChooser;
++import javax.swing.JPanel;
++
++import org.w3c.dom.Element;
++
++public class PathPanel extends TextfieldPanel implements ActionListener {
++
++ /**
++ *
++ */
++ private static final long serialVersionUID = 1486664773406118295L;
++
++ JButton select_button;
++
++ /**
++ * Creates a panel with a text field and a file / path chooser button.
++ *
++ * @param element
++ * @throws GUIBuildException
++ */
++ public PathPanel(Element element, ControlledPanel parent) throws GUIBuildException {
++ super(element, parent);
++
++ if (element.getAttribute("type").equals("path")) {
++ select_button = new JButton("Select Path");
++ } else if (element.getAttribute("type").equals("file")) {
++ select_button = new JButton("Select File");
++ } else {
++ throw new GUIBuildException("PathPanel is not applicable for parameter types other than 'file' and 'path'.");
++ }
++
++ this.remove(textfield);
++ this.add(textfield, "cell 1 0, growx, span2");
++
++ select_button.addActionListener(this);
++ select_button.setActionCommand("open chooser");
++ select_button.setVisible(true);
++ this.add(select_button, "cell 3 0, growx, wrap");
++
++ }
++
++ @Override
++ public void actionPerformed(ActionEvent event) {
++ if (event.getActionCommand().equals("open chooser") && event.getSource() == this.select_button) {
++ try {
++ chooseFile();
++ } catch (final GUIBuildException e) {
++ // TODO Auto-generated catch block
++ e.printStackTrace();
++ }
++ }
++ }
++
++ @Override
++ public void set(HashMap hm, String key, String value) {
++ String val = (String)hm.get(hashKey);
++ if (val != null) textfield.setText(val);
++ this.checkBgColor();
++ }
++
++ /**
++ * Opens the file chooser dialog and writes the path / filepath into the
++ * texfield.
++ *
++ * @throws GUIBuildException
++ */
++ public void chooseFile() throws GUIBuildException {
++ final JFileChooser filechooser = new JFileChooser(System.getProperty("user.dir"));
++
++ if (element.getAttribute("type").equals("path")) {
++ filechooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
++ } else if (element.getAttribute("type").equals("file")) {
++ filechooser.setFileSelectionMode(JFileChooser.FILES_ONLY);
++ } else {
++ throw new GUIBuildException("PathPanel is not applicable for parameter types other than 'file' and 'path'.");
++ }
++
++ final int returnVal = filechooser.showOpenDialog(new JPanel());
++
++ if (returnVal == JFileChooser.APPROVE_OPTION) {
++ if (element.getAttribute("type").equals("path")) {
++ textfield.setText(filechooser.getSelectedFile().getAbsolutePath());
++ } else {
++ textfield.setText(filechooser.getSelectedFile().getName());
++ }
++
++ checkBgColor();
++ }
++ }
++
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/PathPanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/IntegerPanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/IntegerPanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/IntegerPanel.java (revision 17993)
+@@ -0,0 +1,246 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import java.awt.event.*;
++import java.util.HashMap;
++
++import javax.swing.JButton;
++import javax.swing.JOptionPane;
++import javax.swing.SwingConstants;
++
++import org.w3c.dom.Element;
++
++/**
++ * A panel that maintains a number in an editable textfield,
++ * optionally with a maximum and minimum value.
++ * @author korhammer
++ *
++ */
++/**
++ * @author korhammer
++ *
++ */
++public class IntegerPanel extends TextfieldPanel implements ActionListener, FocusListener {
++ /**
++ *
++ */
++ private static final long serialVersionUID = -8959578535487185306L;
++
++ private int defaultvalue;
++ private int maximumvalue;
++ private int minimumvalue;
++
++ private boolean printPlus;
++
++ private final JButton down;
++ private final JButton up;
++
++ /**
++ * Constructor for a NumberPanel.
++ *
++ * @param element
++ * @throws GUIBuildException
++ */
++ public IntegerPanel(Element element, ControlledPanel parent) throws GUIBuildException {
++ super(element, parent);
++
++ setDefaultvalue(0);
++ minimumvalue = Integer.MIN_VALUE;
++ maximumvalue = Integer.MAX_VALUE;
++ printPlus = false;
++
++ if (element.getAttribute("type").equals("integer+")) {
++ setPrintplus(true);
++ } else {
++ setPrintplus(false);
++ }
++
++ if (element.hasAttribute("default")) {
++ setDefaultvalue(element.getAttribute("default"));
++ }
++ if (element.hasAttribute("maximum")) {
++ setMaximumvalue(element.getAttribute("maximum"));
++ }
++ if (element.hasAttribute("minimum")) {
++ setMinimumvalue(element.getAttribute("minimum"));
++ }
++
++ textfield.setColumns(4);
++ textfield.invalidate();
++ textfield.setHorizontalAlignment(SwingConstants.RIGHT);
++
++ up = new JButton("+");
++ up.addActionListener(this);
++ down = new JButton("-");
++ down.addActionListener(this);
++ this.add(up, "split 2, growx, ay top");
++ this.add(down, "growx, ay top");
++ textfield.addActionListener(this);
++ textfield.addFocusListener(this);
++
++ }
++
++ /**
++ * Parses a String to an integer. Different from the standard methods as it
++ * handles the + sign e.g. in time zones.
++ *
++ * @param text
++ * @return the parsed number
++ * @throws NumberFormatException
++ */
++ private static int parse(String text) throws NumberFormatException {
++
++ final char first = text.charAt(0);
++
++ if (first == '+')
++ return Integer.parseInt(text.substring(1));
++ if (first == '-')
++ return Integer.parseInt(text);
++ return Integer.parseInt(text);
++ }
++
++ /*
++ * (non-Javadoc)
++ *
++ * @see
++ * java.awt.event.ActionListener#actionPerformed(java.awt.event.ActionEvent)
++ */
++ @Override
++ public void actionPerformed(ActionEvent e) {
++ if (e.getSource() == up) {
++ manipulateNumber(1);
++ } else if (e.getSource() == down) {
++ manipulateNumber(-1);
++ } else if (e.getSource() == textfield) {
++ parseTextfield();
++ }
++ }
++
++ @Override
++ public void set(HashMap hm, String key, String value) {
++ String val = (String)hm.get(hashKey);
++ if (val != null) {
++ try {
++ Integer.parseInt(val);
++ textfield.setText(val);
++ } catch (Exception e) {} //Do nothing if conversion fails
++ }
++ }
++
++ @Override
++ public void focusGained(FocusEvent arg0) {
++
++ }
++
++ @Override
++ public void focusLost(FocusEvent arg0) {
++ parseTextfield();
++ }
++
++ /**
++ * Manipulates the number in the text field by parsing it, adding the
++ * increment and writing it back into the textfield.
++ *
++ * @param increment
++ */
++ public void manipulateNumber(int increment) {
++ int number;
++
++ try {
++ number = parseTextfield();
++ } catch (final NumberFormatException nfe) {
++ return;
++ }
++
++ if (number + increment <= maximumvalue
++ && number + increment >= minimumvalue) {
++ number += increment;
++ } else if (number + increment < minimumvalue) {
++ number = minimumvalue;
++ } else if (number + increment > maximumvalue) {
++ number = maximumvalue;
++ }
++
++ printToTextfield(number);
++ }
++
++ /**
++ * Calls the parse method on the textfield.
++ *
++ * @return
++ * @throws NumberFormatException
++ */
++ public int parseTextfield() throws NumberFormatException {
++ try {
++ return parse(textfield.getText());
++ } catch (final NumberFormatException nfe) {
++ JOptionPane.showMessageDialog(null, "The textfield " + getKey()
++ + " does not contain a number.");
++ throw nfe;
++ }
++ }
++
++ /**
++ * Prints a number to the text field optionally with a plus sign.
++ *
++ * @param number
++ */
++ public void printToTextfield(int number) {
++ if (this.printPlus && number > 0) {
++ textfield.setText("+" + number);
++ } else {
++ textfield.setText("" + number);
++ }
++ checkBgColor();
++ }
++
++ public void setDefaultvalue(int defaultvalue) {
++ this.defaultvalue = defaultvalue;
++ this.printToTextfield(defaultvalue);
++ }
++
++ public void setDefaultvalue(String defaultvalue) {
++ this.defaultvalue = parse(defaultvalue);
++ this.printToTextfield(this.defaultvalue);
++ }
++
++ public void setMaximumvalue(int maximumvalue) {
++ this.maximumvalue = maximumvalue;
++ }
++
++ public void setMaximumvalue(String maximumvalue) {
++ this.maximumvalue = parse(maximumvalue);
++ }
++
++ public void setMinimumvalue(int minimumvalue) {
++ this.minimumvalue = minimumvalue;
++ }
++
++ public void setMinimumvalue(String minimumvalue) {
++ this.minimumvalue = parse(minimumvalue);
++ }
++
++ public void setPrintplus(boolean printPlus) {
++ this.printPlus = printPlus;
++ printToTextfield(parse(textfield.getText()));
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/IntegerPanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/AlternativePanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/AlternativePanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/AlternativePanel.java (revision 17993)
+@@ -0,0 +1,177 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import java.awt.event.ItemEvent;
++
++import javax.swing.JComboBox;
++import javax.swing.JOptionPane;
++import java.util.HashMap;
++import javax.swing.*;
++import java.awt.*;
++
++import main.GUI;
++
++import org.w3c.dom.Element;
++
++/**
++ * The AlternativePanel contains a dropdown list with alternatives to choose from.
++ *
++ * @author Thomas Egger
++ *
++ */
++public class AlternativePanel extends OptionPanel {
++
++ private static final long serialVersionUID = 4468480774697888798L;
++ private final JComboBox box;
++
++ private String setKey = null, setValue = null;
++ private boolean doSet = false;
++ private HashMap setMap;
++
++ /**
++ * Constructor for the AlternativePanel
++ *
++ * @param element the element for which the panel is created.
++ * @throws GUIBuildException
++ */
++ public AlternativePanel(Element element, ControlledPanel parent) throws GUIBuildException {
++ super(element, parent);
++
++ box = new JComboBox(labels);
++ box.insertItemAt("", 0); //Add an empty label
++ box.setVisible(true);
++ box.setSelectedIndex(0);
++ box.addItemListener(this);
++
++ //Issue 263: On OSX the box.setBackground method does not function without this tweak:
++ if (System.getProperty("os.name").equals("Mac OS X"))
++ box.setRenderer(new ColorCellRenderer(box.getPreferredSize().width));
++
++ if (!optional) box.setBackground(GUI.WARNING_BACKGROUND_COLOR);
++
++ if (defaultTrues.size() > 1) {
++ throw new GUIBuildException("Element " + getHashKey() + " has multiple default values");
++ } else if (defaultTrues.size() == 1) {
++ box.setSelectedItem(defaultTrues.getFirst());
++ }
++
++ this.add(box, "cell 1 0, growx, ay top, wrap");
++ }
++
++ @Override
++ public void close() {
++ this.box.setSelectedIndex(0);
++ }
++
++ @Override
++ public String getValue() {
++
++ if (box.getSelectedIndex() != 0) {
++ //String selectedString = (String) box.getSelectedItem();
++ int index = box.getSelectedIndex() - 1;
++ if (index < 0)
++ return "";
++
++ return values[index];
++ }
++
++ if (!isOptional()) {
++ JOptionPane.showMessageDialog(null, "No option was selected for "
++ + getKey() + " (section '" + getSection().toUpperCase() + "')"
++ + ".\nA value is required. Your .ini-file is probably incorrect.",
++ "Problem when building .ini file",
++ JOptionPane.WARNING_MESSAGE);
++ }
++
++ return null;
++ }
++
++ @Override
++ public synchronized void set(HashMap hm, String key, String value) {
++ doSet = true;
++ setKey = key;
++ setValue = value;
++ setMap = hm;
++
++ if (!hm.containsKey(hashKey)) return;
++ String val = ((String)hm.get(hashKey)).toUpperCase();
++
++ //System.out.println("\tAP: Setting AlternativePanel: " + hashKey + " = " + val);
++
++ for (int ii=0; ii 0) && (helptexts[box.getSelectedIndex()-1] != null)) {
++ help.setText("" + helptexts[box.getSelectedIndex()-1] + "");
++ } else {
++ if (helptext != null)
++ help.setText("" + helptext + "");
++ }
++
++ //handle selected Item
++ final String selectedOption = (String) arg0.getItem();
++ if (selectedOption == "") {
++ if (!optional) {
++ box.setBackground(GUI.WARNING_BACKGROUND_COLOR);
++ }
++ } else {
++ if (!optional) {
++ box.setBackground(GUI.NORMAL_BACKGROUND_COLOR);
++ }
++ //System.out.println("\tDOSET of AlternativePanel: " + doSet);
++ super.handleItemEvent(arg0, selectedOption, doSet, setMap, setKey, setValue);
++ doSet = false;
++ setKey = null;
++ setMap = null;
++ setValue = null;
++ }
++ }
++}
++
++class ColorCellRenderer implements ListCellRenderer {
++ protected DefaultListCellRenderer defaultRenderer = new DefaultListCellRenderer();
++ private Dimension preferredSize = new Dimension(0, 18);
++
++ public ColorCellRenderer(int width) {
++ width -= 50;
++
++ if (width < 100) width = 100; //Default size on OSX
++
++ preferredSize = new Dimension(width, 18);
++ }
++
++ public Component getListCellRendererComponent(JList list, Object value, int index, boolean isSelected, boolean cellHasFocus) {
++ JLabel renderer = (JLabel) defaultRenderer.getListCellRendererComponent(list, value, index, isSelected, cellHasFocus);
++ renderer.setPreferredSize(preferredSize);
++ return renderer;
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/gui_elements/AlternativePanel.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/gui_elements/DecimalPanel.java
+===================================================================
+--- ../trunk-jpl/src/java/src/gui_elements/DecimalPanel.java (revision 0)
++++ ../trunk-jpl/src/java/src/gui_elements/DecimalPanel.java (revision 17993)
+@@ -0,0 +1,133 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package gui_elements;
++
++import java.awt.event.ActionEvent;
++import java.awt.event.ActionListener;
++import java.awt.event.FocusEvent;
++import java.awt.event.FocusListener;
++import java.util.HashMap;
++
++import java.text.DecimalFormat;
++import java.text.ParseException;
++import java.text.DecimalFormatSymbols;
++import javax.swing.JFormattedTextField;
++
++import org.w3c.dom.Element;
++
++public class DecimalPanel extends TextfieldPanel implements ActionListener, FocusListener{
++
++ /**
++ *
++ */
++ private static final long serialVersionUID = 1555742510677354674L;
++ double defaultvalue;
++ double maximumvalue;
++ double minimumvalue;
++
++ JFormattedTextField textfield;
++
++ public DecimalPanel(Element element, ControlledPanel parent) {
++ super(element, parent);
++ this.remove(super.textfield);
++
++ DecimalFormat format = (DecimalFormat)DecimalFormat.getInstance();
++ DecimalFormatSymbols custom = new DecimalFormatSymbols();
++ custom.setDecimalSeparator('.');
++ format.setDecimalFormatSymbols(custom);
++ format.setGroupingUsed(false);
++
++ textfield = new JFormattedTextField(format);
++ textfield.addActionListener(this);
++ textfield.addFocusListener(this);
++ this.add(textfield,"cell 1 0, growx, ay top, gaptop 3");
++ textfield.setVisible(true);
++ this.invalidate();
++ defaultvalue = 0.0;
++ maximumvalue = Double.MAX_VALUE;
++ minimumvalue = Double.MIN_VALUE;
++
++
++ if(element.hasAttribute("minimum")){
++ minimumvalue = Double.parseDouble(element.getAttribute("minimum"));
++ }
++ if(element.hasAttribute("maximum")){
++ maximumvalue = Double.parseDouble(element.getAttribute("maximum"));
++ }
++ if(element.hasAttribute("default")){
++ defaultvalue = Double.parseDouble(element.getAttribute("default"));
++ }
++ setToDefaultValue();
++ }
++
++ private void setToDefaultValue() {
++ textfield.setValue(new Double(defaultvalue));
++ this.invalidate();
++ }
++
++ private void checkValue(){
++ try {
++ textfield.commitEdit();
++ } catch (ParseException e) {
++ // TODO Auto-generated catch block
++ e.printStackTrace();
++ }
++ double currentvalue = ((Number)textfield.getValue()).doubleValue();
++ if(currentvalue > maximumvalue){
++ textfield.setValue(new Double(maximumvalue));
++ }
++ else if(currentvalue.
++*
++*/
++
++package main;
++
++import gui_elements.ControlledPanel;
++
++import java.io.File;
++import java.io.FileWriter;
++import java.io.IOException;
++import java.util.HashMap;
++import java.util.LinkedList;
++import java.util.Set;
++import java.util.TreeMap;
++import java.util.Iterator;
++
++/**
++ * Class that maintains all ControlledPanels so that values can be retrieved
++ * from panels, ini-files can be written. And a panel is not multiply created.
++ *
++ * @author korhammer
++ *
++ */
++public class PanelControl {
++
++ LinkedList order;
++ HashMap> panels;
++ HashMap comments = null;
++ HashMap added_comments = null;
++ HashMap> unusedKeys = null;
++ PanelNode rootNode = null;
++
++ /**
++ * Constructor for the panel control.
++ */
++ public PanelControl() {
++ panels = new HashMap>();
++ order = new LinkedList();
++
++ unusedKeys = new HashMap>();
++ }
++
++ public PanelControl(PanelControl p) {
++ panels = new HashMap>(p.panels);
++ order = new LinkedList(p.order);
++ if (added_comments != null)
++ added_comments = new HashMap(p.added_comments);
++
++ if (comments != null)
++ comments = new HashMap(p.comments);
++ }
++
++ public void setUnusedKeys(String key, String value) {
++ //Parse key
++ int offset = key.indexOf("::");
++ String section = key.substring(0, offset);
++ String sectionkey = key.substring(offset + 2);
++
++ HashMap hm = unusedKeys.get(section);
++ if (hm == null) unusedKeys.put(section, new HashMap());
++
++ unusedKeys.get(section).put(sectionkey, value);
++ }
++
++ public void setComments(HashMap inaddedcomments, HashMap incomments) {
++ this.added_comments = new HashMap(inaddedcomments);
++ this.comments = new HashMap(incomments);
++ }
++
++ /**
++ * @param section
++ * @param key
++ * @return true if a panel with such key is maintained in the specified
++ * section
++ */
++ public boolean contains(String section, String key) {
++ if (!panels.containsKey(section))
++ return false;
++
++ return panels.get(section).containsKey(key);
++ }
++
++ /**
++ *
++ * @param section
++ * @param key
++ * @return the panel with the specified section / key pair
++ */
++ public ControlledPanel get(String section, String key) {
++ return panels.get(section).get(key);
++ }
++
++ /**
++ * Prints the ini-file at the specified path.
++ *
++ * @param path
++ */
++ public void printToFile(String path) {
++ /* create file */
++ final File file = new File(path);
++
++ try {
++ final FileWriter writer = new FileWriter(file);
++
++ writer.write(this.toString());
++ writer.close();
++ } catch (final IOException e) {
++ // TODO Auto-generated catch block
++ e.printStackTrace();
++ }
++ }
++
++ /**
++ * Adds the panel to the specified section.
++ *
++ * @param section
++ * @param panel
++ */
++ public void put(String section, ControlledPanel panel) {
++ final String key = panel.getKey();
++ if (!panels.containsKey(section)) {
++ order.add(section);
++ panels.put(section, new TreeMap());
++ }
++ panels.get(section).put(key, panel);
++ }
++
++ /**
++ * Removes the panel with the specified section and key.
++ *
++ * @param section
++ * @param key
++ * @return the panel
++ */
++ public ControlledPanel remove(String section, String key) {
++ return panels.get(section).remove(key);
++ }
++
++ /**
++ * Prints the maintained panels to a string.
++ *
++ * @return an ini-file-like structure
++ */
++ public void setRootNode(PanelNode inrootNode) {
++ rootNode = inrootNode;
++ }
++
++ public String extractKey(String instring) {
++ int offset = instring.indexOf("::");
++ if (offset == -1) return null;
++
++ return instring.substring(offset+2);
++ }
++
++ @Override
++ public String toString() {
++ String out = "";
++
++ for (final String section : order) {
++ /* create section */
++ final String sectionstring = "[" + section.toUpperCase() + "]\n";
++ String keyvaluestring = "";
++
++ /* print section */
++ LinkedList keys = new LinkedList();
++ PanelNode sectionNode = rootNode.get(section.toUpperCase());
++ if (sectionNode != null) sectionNode.getKeyList(keys);
++
++ //final Set keys = panels.get(section).keySet();
++ for (final String hashKey : keys) {
++ String key = extractKey(hashKey);
++ if (key == null) continue;
++
++ final String value = panels.get(section).get(key).getValue();
++ if (value != null) {
++ if ((comments != null) && comments.containsKey(hashKey.toUpperCase())) {
++ String precomments = comments.get(hashKey.toUpperCase());
++ if (!precomments.equals(""))
++ keyvaluestring += precomments;
++ }
++
++ keyvaluestring += key + "\t=\t" + value;
++
++ if ((added_comments != null) && added_comments.containsKey(hashKey.toUpperCase()))
++ keyvaluestring += "\t" + added_comments.get(hashKey.toUpperCase());
++
++ keyvaluestring += "\n";
++ }
++ }
++
++ //Add unused keys
++ HashMap extra = unusedKeys.get(section.toUpperCase());
++ if (extra != null) {
++ if (!keyvaluestring.equals("")) keyvaluestring += "\n";
++
++ for (String extrakey : extra.keySet()) {
++ String hashKey = section.toUpperCase() + "::" + extrakey.toUpperCase();
++ if ((comments != null) && comments.containsKey(hashKey)) {
++ String precomments = comments.get(hashKey);
++ if (!precomments.equals(""))
++ keyvaluestring += precomments;
++ }
++
++ keyvaluestring += extrakey + "\t=\t" + extra.get(extrakey);
++
++ if ((added_comments != null) && added_comments.containsKey(hashKey))
++ keyvaluestring += "\t" + added_comments.get(hashKey);
++
++ keyvaluestring += "\n";
++ }
++ }
++
++ //check if there aren't any comments in that section
++ String hashKey = section.toUpperCase() + "::";
++ if ((comments != null) && comments.containsKey(hashKey)) {
++ String precomments = comments.get(hashKey);
++ if (!precomments.equals("")) {
++ if (precomments.indexOf("\n") == -1) precomments += "\n";
++ keyvaluestring = precomments + keyvaluestring + "\n";
++ }
++ }
++
++ /* add section only if keys / values are printed */
++ if (!keyvaluestring.equals("")) {
++ out += sectionstring + keyvaluestring + "\n";
++ }
++ }
++
++ return out;
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/main/PanelControl.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/main/XMLHelper.java
+===================================================================
+--- ../trunk-jpl/src/java/src/main/XMLHelper.java (revision 0)
++++ ../trunk-jpl/src/java/src/main/XMLHelper.java (revision 17993)
+@@ -0,0 +1,525 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package main;
++
++import gui_elements.GUIBuildException;
++
++import java.io.IOException;
++import java.util.LinkedList;
++
++import javax.xml.parsers.DocumentBuilder;
++import javax.xml.parsers.DocumentBuilderFactory;
++import javax.xml.parsers.ParserConfigurationException;
++import javax.xml.transform.TransformerConfigurationException;
++import javax.xml.transform.TransformerException;
++import javax.xml.transform.TransformerFactory;
++
++import org.w3c.dom.Document;
++import org.w3c.dom.Element;
++import org.w3c.dom.Node;
++import org.w3c.dom.NodeList;
++import org.xml.sax.SAXException;
++
++//for the XML printing
++import javax.xml.transform.stream.StreamResult;
++import javax.xml.transform.*;
++import javax.xml.transform.dom.*;
++import java.io.StringWriter;
++
++public class XMLHelper {
++
++ /**
++ * Find the parameter values for which the element should be cloned
++ * e.g. for section tags.
++ *
++ * @param element
++ * @param tagName
++ * @param attributeName
++ * @param parentArgument
++ * @return the
++ */
++ public static String[] findApplicableValues(Element element,
++ String tagName, String attributeName, String parentArgument) {
++
++ final String[] argumentsFromElement = getAttributesFromChildren(
++ element, tagName, attributeName);
++
++ /*
++ * If no such arguments are specified for the current element but there
++ * are for the parent element, take that of the parent.
++ */
++ if (argumentsFromElement.length == 0 && parentArgument != null)
++ return new String[] { parentArgument };
++ else if ((argumentsFromElement.length > 0 && parentArgument != null)) {
++ if (getCertainChildElement(element, tagName, attributeName,
++ parentArgument) != null)
++ return new String[] { parentArgument };
++ else
++ /*
++ * The empty intersection is an empty array so that his case can
++ * be handled differently from the null case below.
++ */
++ return new String[0];
++ }
++
++ /*
++ * If no arguments are specified for the parent use all element
++ * arguments.
++ */
++ else if (argumentsFromElement.length > 0 && parentArgument == null)
++ return argumentsFromElement;
++ else if (argumentsFromElement.length == 0 && parentArgument == null)
++ return null;
++ return null;
++ }
++
++ /**
++ * Get all children of an element that have a certain element tag and
++ * extract the values for a certain attribute.
++ *
++ * @param parent
++ * the parent element
++ * @param tag
++ * the element tag
++ * @param attribute
++ * the attribute name
++ *
++ * @return a String array with the attribute values
++ */
++ public static String[] getAttributesFromChildren(Element parent, String tag, String attribute) {
++ final Element[] elements = getElementArray(parent, tag);
++
++ final String[] attributes = new String[elements.length];
++ for (int i = 0; i < elements.length; i++) {
++ attributes[i] = elements[i].getAttribute(attribute);
++ }
++ return attributes;
++ }
++
++ /**
++ * Returns the first child element that has the specified element tag and
++ * the value for the specified attribute.
++ *
++ * @param parent
++ * @param tag
++ * @param attribute
++ * @param value
++ * @return the first child element that meets the criteria
++ */
++ public static Element getCertainChildElement(Element parent, String tag,
++ String attribute, String value) {
++ final Element[] allElements = getElementArray(parent, tag);
++ for (final Element element : allElements) {
++ if (element.hasAttribute(attribute)) {
++ if (element.getAttribute(attribute).equals(value))
++ return element;
++ }
++ }
++ return null;
++ }
++
++ /**
++ * For the specified element gets the text that is contained in the first
++ * child that has a certain element name.
++ *
++ *
++ * @param parent
++ * the parent element
++ * @param tag
++ * the element tag for the child
++ * @return the text content
++ */
++ public static String getChildElementContent(Element parent, String tag) {
++ final Element[] elements = getElementArray(parent, tag);
++ if (elements.length == 0)
++ return null;
++
++ return elements[0].getTextContent();
++ }
++
++
++
++ /**
++ * @param parent
++ * @param tag
++ * @return all child elements of the parent with the specified tag
++ */
++ public static Element[] getElementArray(Element parent, String tag) {
++ if (!parent.hasChildNodes())
++ return new Element[0];
++
++ final NodeList nodeList = parent.getChildNodes();
++ final LinkedList elementlist = new LinkedList();
++ for (int i = 0; i < nodeList.getLength(); i++) {
++
++ final Node element = nodeList.item(i);
++ if (element.getNodeType() == Node.ELEMENT_NODE && ((Element) element).getTagName().equals(tag)) {
++ elementlist.add((Element) element);
++ }
++ }
++ final Element[] elements = new Element[elementlist.size()];
++
++ return elementlist.toArray(elements);
++ }
++
++ public static Element[] getElementArray(Element parent, String[] tags) {
++ if (!parent.hasChildNodes())
++ return new Element[0];
++
++ final NodeList nodeList = parent.getChildNodes();
++ final LinkedList elementlist = new LinkedList();
++ for (int ii = 0; ii < nodeList.getLength(); ii++) {
++
++ final Node element = nodeList.item(ii);
++ if (element.getNodeType() == Node.ELEMENT_NODE) {
++ //Loop through all possible tags
++ for (int jj=0; jj.
++*
++*/
++
++package main;
++
++import gui_elements.ControlledPanel;
++import gui_elements.GUIBuildException;
++
++import java.awt.BorderLayout;
++import java.awt.Color;
++import java.awt.Component;
++import java.awt.Container;
++import java.awt.Desktop;
++import java.awt.*;
++import java.awt.event.ActionEvent;
++import java.awt.event.ActionListener;
++import java.awt.event.WindowEvent;
++import java.awt.event.WindowListener;
++import java.io.IOException;
++import java.net.URISyntaxException;
++import java.util.HashMap;
++import java.util.LinkedList;
++
++import javax.swing.BoxLayout;
++import javax.swing.ImageIcon;
++import javax.swing.JButton;
++import javax.swing.JEditorPane;
++import javax.swing.JFileChooser;
++import javax.swing.JFrame;
++import javax.swing.JOptionPane;
++import javax.swing.JPanel;
++import javax.swing.JScrollPane;
++import javax.swing.JTabbedPane;
++import javax.swing.JToolBar;
++import javax.swing.event.HyperlinkEvent;
++import javax.swing.event.HyperlinkListener;
++import javax.swing.filechooser.FileNameExtensionFilter;
++import java.io.*;
++import javax.swing.*;
++import java.awt.*;
++import java.awt.event.*;
++
++import net.miginfocom.swing.MigLayout;
++
++/**
++ * The GUI created by the author.
++ *
++ * @author korhammer et egger
++ *
++ */
++public class GUI extends JFrame implements WindowListener, ActionListener, HyperlinkListener {
++
++ /**
++ *
++ */
++ private static final long serialVersionUID = -2428732881181670225L;
++ public static PanelNode rootNode = null;
++
++ private static String title = GUI.class.getPackage().getImplementationTitle() + " " + GUI.class.getPackage().getImplementationVersion();
++
++ public static final Color LABEL_COLOR = Color.decode("#000080");
++ public static Color NORMAL_BACKGROUND_COLOR = Color.decode("#EEEEEE");
++ public static Color WARNING_BACKGROUND_COLOR = Color.decode("#FF0011");
++
++ public static ImageIcon openicon = new ImageIcon(GUI.class.getClassLoader().getResource("resources/icons/xml_open.png"));
++ public static ImageIcon openiniicon = new ImageIcon(GUI.class.getClassLoader().getResource("resources/icons/fileopen.png"));
++ public static ImageIcon exporticon = new ImageIcon(GUI.class.getClassLoader().getResource("resources/icons/filesave.png"));
++ public static ImageIcon previewicon = new ImageIcon(GUI.class.getClassLoader().getResource("resources/icons/kghostview.png"));
++ public static ImageIcon reseticon = new ImageIcon(GUI.class.getClassLoader().getResource("resources/icons/reset.png"));
++
++ private final JButton createbutton;
++ private final JButton previewButton;
++ private final JButton openbutton;
++ private final JButton openinibutton;
++ private final JButton resetbutton;
++
++ private final JTabbedPane tabpane;
++ private final JToolBar toolbar;
++ private HashMap tabpanels;
++
++ private String configFilePath, iniFilePath;
++
++ /*
++ * Creates a window with the static components of the GUI, i.e. components
++ * that do not depend on the configuration file.
++ */
++ public GUI() throws GUIBuildException {
++ super(title);
++
++ configFilePath = System.getProperty("user.dir");
++ iniFilePath = System.getProperty("user.dir");
++
++ tabpanels = new HashMap();
++
++ Dimension screenDim = new Dimension(1280, 800);
++ Dimension maxDim = null;
++
++ if (this.getMaximizedBounds() == null) {
++ Toolkit tk = Toolkit.getDefaultToolkit();
++ maxDim = tk.getScreenSize();
++ this.setMaximizedBounds(new Rectangle(0, 0, (int)maxDim.getWidth(), (int)maxDim.getHeight()));
++ } else {
++ maxDim = this.getMaximizedBounds().getSize();
++ }
++
++ if (maxDim.height < screenDim.height) {
++ screenDim.height = maxDim.height;
++ if (screenDim.height > 100)
++ screenDim.height -= 25;
++ }
++
++ if (maxDim.width < screenDim.width) {
++ screenDim.width = maxDim.width;
++ if (screenDim.width > 100)
++ screenDim.width -= 25;
++ }
++
++ this.setSize(screenDim);
++ //this.setExtendedState(MAXIMIZED_BOTH);
++ this.setVisible(true);
++ this.setLayout(new BorderLayout());
++
++ this.toolbar = new JToolBar();
++ toolbar.setLayout(new BoxLayout(toolbar, 1));
++ toolbar.setFloatable(false);
++ this.setVisible(true);
++ this.add(toolbar, BorderLayout.WEST);
++
++ this.tabpane = new JTabbedPane();
++ this.add(tabpane);
++ tabpane.setVisible(true);
++
++ this.openbutton = new JButton(openicon);
++ this.openbutton.setActionCommand("open config");
++ this.openbutton.setToolTipText("Open XML-configuration");
++ openbutton.addActionListener(this);
++ toolbar.add(this.openbutton);
++
++ this.openinibutton = new JButton(openiniicon);
++ this.openinibutton.setActionCommand("open ini");
++ this.openinibutton.setToolTipText("Open existing INI file");
++ openinibutton.addActionListener(this);
++ toolbar.add(this.openinibutton);
++
++ this.resetbutton = new JButton(reseticon);
++ this.resetbutton.setActionCommand("reset");
++ this.resetbutton.setToolTipText("Reset Interface");
++ resetbutton.addActionListener(this);
++ toolbar.add(this.resetbutton);
++
++ this.createbutton = new JButton(exporticon);
++ this.createbutton.setActionCommand("write config");
++ this.createbutton.setToolTipText("Write to INI-file");
++ createbutton.addActionListener(this);
++ toolbar.add(this.createbutton);
++
++ this.previewButton = new JButton(previewicon);
++ this.previewButton.setActionCommand("preview");
++ this.previewButton.setToolTipText("Preview INI-file");
++ previewButton.addActionListener(this);
++ toolbar.add(previewButton);
++
++ this.addWindowListener(this);
++
++ rootNode = new PanelNode("");
++ }
++
++ /**
++ * Writes the application name into the GUI window title bar.
++ *
++ * @param application
++ */
++ public void setApplicationForTitle(String application){
++ if(application.equals("")){
++ this.setTitle(title);
++ }
++ else{
++ this.setTitle(title + " for "+application);
++ }
++ }
++
++ public void hideOpenButton(){
++ openbutton.setVisible(false);
++ }
++
++ /**
++ * Closes all tabs.
++ */
++ public void closeAllTabs(){
++ tabpane.removeAll();
++ }
++
++ /**
++ * Adds a component to the tab specified and creates the tab if it does not
++ * already exist.
++ *
++ * @param comp
++ * @param tabName
++ * @throws GUIBuildException
++ */
++ public void addToTab(ControlledPanel comp, String tabName, ControlledPanel parentPanel) throws GUIBuildException {
++ tabName = Character.toUpperCase(tabName.charAt(0)) + tabName.substring(1).toLowerCase();
++
++ String section = ((ControlledPanel)comp).getSection().toUpperCase();
++ String key = section + "::" + ((ControlledPanel)comp).getKey();//((ControlledPanel)comp).getHashKey();
++ //System.out.println("\tPanel: " + ((ControlledPanel)comp).getHashKey() + " Section: " + ((ControlledPanel)comp).getSection());
++
++ PanelNode sectionNode = rootNode.getChild(section);
++ if (sectionNode == null) {
++ PanelNode tmp = new PanelNode(section);
++ //System.out.println("\t--Adding section '" + section + "' to tree");
++ sectionNode = rootNode.add(tmp);
++ }
++
++ if (parentPanel != null) {
++ //System.out.println("\tLooking for node: " + parentPanel.getHashKey());
++ sectionNode = sectionNode.get(parentPanel.getSection().toUpperCase() + "::" + parentPanel.getKey());
++ }
++
++ if (sectionNode != null) {
++ PanelNode keyNode = sectionNode.get(key);
++ if (keyNode == null) {
++ PanelNode tmp = new PanelNode(key);
++ keyNode = sectionNode.add(tmp);
++ //System.out.println("\t--Adding key '" + key + "' to tree as leaf to " + sectionNode.getData());
++ }
++ }
++
++ JPanel tab;
++ if (tabpane.indexOfTab(tabName) == -1) {
++
++ tab = new JPanel();
++ tab.setBackground(Color.white);
++ tab.setVisible(true);
++ tab.setLayout(new MigLayout("wrap 1"));
++
++ JScrollPane scrollpane = new JScrollPane(tab);
++ tabpane.add(tabName, scrollpane);
++ tabpanels.put(tabName, tab);
++
++ } else {
++ tab = tabpanels.get(tabName);
++ }
++
++ if (parentPanel != null && containsPanel(tab, parentPanel)) {
++ parentPanel.add(comp, "span");
++ } else {
++ tab.add(comp);
++ }
++
++ //JViewport jv = ((JScrollPane)tabpane.getComponentAt(tabpane.indexOfTab(tabName))).getViewport();
++ //jv.setViewPosition(new Point(0,0));
++
++ this.validate();
++ }
++
++ public void removeFromTab(ControlledPanel parameterPanel, String section, ControlledPanel parentPanel) {
++ final String tabTitle = section.substring(0, 1).toUpperCase() + section.substring(1).toLowerCase();
++ final int index = tabpane.indexOfTab(tabTitle);
++
++ final Container container = (Container) tabpane.getComponentAt(index);
++
++ //System.out.println("Removing Panel: " + parameterPanel.getHashKey());
++ PanelNode tmp = rootNode.get(parameterPanel.getSection().toUpperCase() + "::" + parameterPanel.getKey());
++ tmp.getParent().remove(tmp);
++
++ if (parentPanel != null && containsPanel(container, parentPanel)) {
++ parentPanel.remove(parameterPanel);
++ } else {
++ container.remove(parameterPanel);
++ }
++
++ GUIBuilder.panelControl.remove(section, parameterPanel.getKey());
++
++ container.repaint();
++ this.validate();
++ }
++
++ public boolean containsPanel(Container container, JPanel panel) {
++
++ for (final Component component : container.getComponents()) {
++ if (component == panel)
++ return true;
++ if (containsPanel((Container) component, panel))
++ return true;
++ }
++ return false;
++ }
++
++ @Override
++ public void actionPerformed(ActionEvent e) {
++ if (e.getActionCommand().equals("write config") && GUIBuilder.application!=null ) {
++ GUIBuilder.panelControl.setRootNode(rootNode);
++
++ try {
++ GUIBuilder.printIOFile();
++ } catch (final IOException e1) {
++ // TODO Auto-generated catch block
++ e1.printStackTrace();
++ } catch (final GUIBuildException e2) {
++ // TODO Auto-generated catch block
++ e2.printStackTrace();
++ }
++ } else if (e.getActionCommand().equals("preview") && GUIBuilder.application!=null) {
++ GUIBuilder.panelControl.setRootNode(rootNode);
++ previewINIFile();
++ } else if (e.getActionCommand().equals("reset") && GUIBuilder.application!=null) {
++ resetGUI();
++ } else if( (e.getActionCommand().equals("open config"))) {
++ openFile();
++ } else if( (e.getActionCommand().equals("open ini"))) {
++ openINIFile();
++ }
++ }
++
++ public void resetGUI() {
++ try {
++ int returnval = GUIBuilder.closeFile();
++ if (returnval == JOptionPane.CANCEL_OPTION) return;
++ GUIBuilder.buildGUI(GUIBuilder.currentConfigFile);
++ } catch (GUIBuildException e) {
++ e.printStackTrace();
++ }
++ }
++
++ public void previewINIFile(){
++ JFrame frame = new JFrame();
++ frame.setSize(600,800);
++ frame.setVisible(true);
++ //frame.setLayout(new BorderLayout());
++
++ JEditorPane pane = new JEditorPane();
++
++ pane.setText(GUIBuilder.panelControl.toString());
++ pane.setVisible(true);
++ pane.setEditable(false);
++
++ JScrollPane scrollPane = new JScrollPane(pane);
++ scrollPane.setVisible(true);
++ frame.add(scrollPane);
++
++ frame.validate();
++ frame.repaint();
++ }
++
++ public void openINIFile(){
++ final FileNameExtensionFilter inifilter = new FileNameExtensionFilter(".ini files", "ini");
++ final JFileChooser filechooser = new JFileChooser(iniFilePath);
++ filechooser.setFileFilter(inifilter);
++ final int returnval = filechooser.showOpenDialog(new JPanel());
++
++ HashMap hm = new HashMap();
++ HashMap comments = new HashMap();
++ HashMap added_comments = new HashMap();
++
++ if (returnval == JFileChooser.APPROVE_OPTION) {
++ final String path = filechooser.getSelectedFile().toString();
++ if (filechooser.getSelectedFile().isDirectory()) return;
++
++ iniFilePath = filechooser.getSelectedFile().getParent();
++
++ System.out.println("Opening INI file: " + path);
++
++ try {
++ BufferedReader br = new BufferedReader(new FileReader(path));
++ String line;
++
++ String section = "GENERAL::";
++ String clines = "";
++
++ while((line = br.readLine()) != null) {
++ int offset = line.indexOf(";");
++ int offset2 = line.indexOf("#");
++
++ if ((offset2 != -1) && (offset != -1)) {
++ if (offset2 < offset) offset = offset2;
++ } else if ((offset2 != -1) && (offset == -1)) {
++ offset = offset2;
++ }
++
++ String comment = null;
++ //System.out.println("CLINES" + clines);
++ if (offset != -1) {
++ //System.out.println("COMMENT: " + line.substring(offset));
++ comment = line.substring(offset);
++ } else {
++ //System.out.println("COMMENTLESS");
++ }
++
++ if (-1 != offset) line = line.substring(0, offset);
++
++ offset = line.indexOf("#");
++ if (-1 != offset) line = line.substring(0, offset);
++
++ line = line.trim(); //take away ws
++
++ if (line.length()>1) {
++
++ if (line.charAt(0) == '[') {
++ offset = line.indexOf("]");
++ if ((offset == -1) || (offset <= 1)) continue;
++
++ if (!clines.equals("")) {
++ int lbr = clines.indexOf("\n");
++ clines = clines.substring(0, lbr);
++ //System.out.println("Adding the precomment: " + clines);
++ comments.put(section, clines);
++ clines = "";
++ }
++
++ section = line.substring(1, offset).toUpperCase() + "::";
++ //System.out.println("New Section: " + section);
++
++ } else {
++ String[] tokens = line.split("=");
++ if (tokens.length == 2) {
++ String key = tokens[0].trim();
++ String value = tokens[1].trim();
++ if (key.length() > 0) {
++ hm.put(section + key.toUpperCase(), value);
++ if (comment != null) added_comments.put(section + key.toUpperCase(), comment);
++ if (!clines.equals("")) {
++ //System.out.println("Adding the precomment: " + clines);
++ comments.put(section + key.toUpperCase(), clines);
++ clines = "";
++ }
++ }
++ }
++ }
++
++ //System.out.println(line);
++ } else {
++ //it was a comment line only, associate it with the next key
++ if (comment != null) clines += comment;
++ clines += "\n";
++ }
++ }
++ br.close();
++
++ GUIBuilder.setValues(hm, added_comments, comments);
++ } catch (Exception e) {
++ // TODO Auto-generated catch block
++ e.printStackTrace();
++ }
++ }
++ }
++
++ public void openFile(){
++ /* If a configuration is already open, ask for close. */
++ final FileNameExtensionFilter xmlfilter = new FileNameExtensionFilter(".xml files", "xml");
++ final JFileChooser filechooser = new JFileChooser(configFilePath);
++ filechooser.setFileFilter(xmlfilter);
++ final int returnval = filechooser.showOpenDialog(new JPanel());
++ if (returnval == JFileChooser.APPROVE_OPTION) {
++ if(GUIBuilder.application != null){
++ final int returnval2 = GUIBuilder.closeFile();
++ if (returnval2 == JOptionPane.CANCEL_OPTION) return;
++ }
++
++ final String path = filechooser.getSelectedFile().toString();
++ if (filechooser.getSelectedFile().isDirectory()) return;
++
++ configFilePath = filechooser.getSelectedFile().getParent();
++
++ try {
++ GUIBuilder.buildGUI(path);
++ } catch (GUIBuildException e) {
++ // TODO Auto-generated catch block
++ e.printStackTrace();
++ }
++ }
++ }
++
++ @Override
++ public void windowActivated(WindowEvent e) {
++ // TODO Auto-generated method stub
++
++ }
++
++ @Override
++ public void windowClosed(WindowEvent e) {
++ // TODO Auto-generated method stub
++
++ }
++
++ @Override
++ public void windowClosing(WindowEvent e) {
++ System.exit(NORMAL);
++
++ }
++
++ @Override
++ public void windowDeactivated(WindowEvent e) {
++ // TODO Auto-generated method stub
++
++ }
++
++ @Override
++ public void windowDeiconified(WindowEvent e) {
++ // TODO Auto-generated method stub
++
++ }
++
++ @Override
++ public void windowIconified(WindowEvent e) {
++ // TODO Auto-generated method stub
++
++ }
++
++ @Override
++ public void windowOpened(WindowEvent e) {
++ // TODO Auto-generated method stub
++
++ }
++
++ @Override
++ public void hyperlinkUpdate(HyperlinkEvent e) {
++
++ if (e.getEventType() == HyperlinkEvent.EventType.ACTIVATED) {
++ try {
++ Desktop.getDesktop().browse(e.getURL().toURI());
++ } catch (IOException e1) {
++ // TODO Auto-generated catch block
++ e1.printStackTrace();
++ } catch (URISyntaxException e1) {
++ // TODO Auto-generated catch block
++ e1.printStackTrace();
++ }
++ }
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/main/GUI.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/main/PanelNode.java
+===================================================================
+--- ../trunk-jpl/src/java/src/main/PanelNode.java (revision 0)
++++ ../trunk-jpl/src/java/src/main/PanelNode.java (revision 17993)
+@@ -0,0 +1,69 @@
++package main;
++
++import java.util.List;
++import java.util.LinkedList;
++
++public class PanelNode {
++ private String data;
++ private PanelNode parent;
++ private LinkedList children = new LinkedList();
++
++ public PanelNode(String indata) {
++ data = indata;
++ parent = null;
++ }
++
++ public PanelNode(PanelNode p) {
++ data = p.data;
++ parent = p.parent;
++ children = new LinkedList(p.children);
++ }
++
++ public String getData() {
++ return data;
++ }
++
++ public PanelNode getChild(String data) {
++ for (PanelNode child : children) {
++ if (child.data.equals(data))
++ return child;
++ }
++
++ return null;
++ }
++
++ public PanelNode add(PanelNode c) {
++ c.parent = this;
++ children.add(c);
++
++ return children.getLast();
++ }
++
++ public PanelNode get(String searchstring) {
++ if (data.equals(searchstring)) return this;
++
++ for (PanelNode child : children) {
++ PanelNode tmp = child.get(searchstring);
++ if (tmp != null) return tmp;
++ }
++
++ return null; //Nothing found in subtree
++ }
++
++ public boolean remove(PanelNode tmp) {
++ return children.remove(tmp);
++ }
++
++ public PanelNode getParent() {
++ return parent;
++ }
++
++ public void getKeyList(LinkedList keyList) {
++ if ((data.indexOf('#') == -1) && (data.indexOf('%') == -1))
++ keyList.add(data);
++
++ for (PanelNode child : children) {
++ child.getKeyList(keyList);
++ }
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/main/PanelNode.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/main/GUIBuilder.java
+===================================================================
+--- ../trunk-jpl/src/java/src/main/GUIBuilder.java (revision 0)
++++ ../trunk-jpl/src/java/src/main/GUIBuilder.java (revision 17993)
+@@ -0,0 +1,391 @@
++/***********************************************************************************/
++/* Copyright 2012 WSL Institute for Snow and Avalanche Research SLF-DAVOS */
++/***********************************************************************************/
++/* This file is part of INIshell.
++*
++* INIshell is free software: you can redistribute it and/or modify
++* it under the terms of the GNU General Public License as published by
++* the Free Software Foundation, either version 3 of the License, or
++* (at your option) any later version.
++*
++* INIshell is distributed in the hope that it will be useful,
++* but WITHOUT ANY WARRANTY; without even the implied warranty of
++* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++* GNU General Public License for more details.
++*
++* You should have received a copy of the GNU General Public License
++* along with INIshell. If not, see .
++*
++*/
++
++package main;
++
++import gui_elements.ControlledPanel;
++import gui_elements.GUIBuildException;
++
++import java.io.IOException;
++
++import javax.swing.ProgressMonitor;
++import javax.swing.JFileChooser;
++import javax.swing.JOptionPane;
++import javax.swing.JPanel;
++import javax.swing.filechooser.FileNameExtensionFilter;
++
++import java.util.*;
++
++import org.w3c.dom.Document;
++import org.w3c.dom.Element;
++
++/**
++ * The main class to build the .ini file creator. Upon construction it reads an
++ * XML file and creates the corresponding GUI. Maintains an ElementControl
++ * object.
++ *
++ * @author korhammer et egger
++ *
++ */
++public class GUIBuilder {
++ public static ProgressMonitor monitor;
++
++ public static final String xsd = GUIBuilder.class.getClassLoader().getResource("resources/config_schema-0.1.1.xsd").toString();
++ public static String res_filepath = GUIBuilder.class.getClassLoader().getResource("resources/default_config.xml").toString(); //the default config to start with
++ public static Document doc;
++
++ public static GUI gui;
++ public static PanelControl panelControl;
++
++ public static String application;
++ public static String currentConfigFile;
++
++ public static String saveFilePath = System.getProperty("user.dir");
++
++
++ private static String getFileExtension(final String file_and_path) {
++ final String file_sep = System.getProperty("file.separator");
++
++ // get filename without path
++ final int fileSepIndex = file_and_path.lastIndexOf(file_sep);
++ if (fileSepIndex == -1) {
++ return "";
++ }
++ final String filename = file_and_path.substring(fileSepIndex+1); //remove path
++
++ // get the extension from the filename
++ final int extIndex = filename.lastIndexOf(".");
++ if (extIndex == -1)
++ return "";
++
++ return filename.substring(extIndex+1);
++ }
++
++ /**
++ * The main method. Opens the GUI Builder with a menu bar on the side.
++ * If an XML filepath is handed over as an argument,
++ * the XML file is opened.
++ *
++ * @param args
++ * @throws GUIBuildException
++ */
++ public static void main(String args[]) throws GUIBuildException {
++
++ new GUIBuilder();
++
++ if ((args.length != 0) && (args[0].length() > 0))
++ res_filepath = args[0]; //User may provice xml file as first argument
++
++ buildGUI(res_filepath);
++ //gui.hideOpenButton();
++ }
++
++ /**
++ * Builds a GUI from the XML-file specified with validation through
++ * the specified schema.
++ *
++ * @param filepath
++ * @param schemapath
++ * @throws GUIBuildException
++ */
++ public GUIBuilder() throws GUIBuildException {
++ if (System.getProperty("mrj.version") != null) { //detect if running on mac
++ System.setProperty("com.apple.mrj.application.apple.menu.about.name", "Inishell");
++ System.setProperty("apple.awt.brushMetalLook", "true");
++ }
++ gui = new GUI();
++ }
++
++ public static void setComments(HashMap added_comments, HashMap comments) {
++ panelControl.setComments(added_comments, comments);
++ }
++
++ /**
++ * Builds the gui for a filepath that can either be handed over as an argument
++ * on application start or chosen by using the open button.
++ *
++ * @param filepath
++ * @throws GUIBuildException
++ */
++ public static void buildGUI(String filepath) throws GUIBuildException{
++ currentConfigFile = filepath;
++
++ doc = XMLHelper.readXML(filepath, xsd);
++ doc = XMLHelper.resolveReferences(doc);
++
++ application = doc.getDocumentElement().getAttribute("application");
++
++ gui.setApplicationForTitle(application);
++
++ panelControl = new PanelControl();
++
++ final Element root = doc.getDocumentElement();
++ recursiveBuild(root, null, false);
++ }
++
++
++ public static void setValues(final HashMap hm, final HashMap added_comments, final HashMap comments) {
++ if (hm == null) return;
++
++ monitor = new ProgressMonitor(gui, "Loading INI file", "0 out of " + panelControl.order.size() + " sections loaded", 0, panelControl.order.size());
++ monitor.setMillisToPopup(0);
++
++ Thread myrunner = new Thread() {
++ public void run() {
++ int progress_counter = 0; //Effectively counts the sections already parsed into the GUI
++ try {
++ final int returnval = GUIBuilder.closeFile();
++ if (returnval == JOptionPane.CANCEL_OPTION) return;
++ monitor.setProgress(progress_counter);
++
++ GUIBuilder.buildGUI(currentConfigFile);
++ } catch (GUIBuildException e) {
++ e.printStackTrace();
++ }
++
++ gui.setEnabled(false); //Disable user interaction while the ProgressMonitor is on
++
++ HashSet usedKeys = new HashSet(); //save all keys that were used from the HashMap
++ HashSet unusedKeys = new HashSet(); //save all keys that were used from the HashMap
++
++ Iterator>> sectionIterator = panelControl.panels.entrySet().iterator();
++ while (sectionIterator.hasNext()) {
++ progress_counter++;
++ monitor.setProgress(progress_counter);
++ monitor.setNote(progress_counter + " out of " + panelControl.order.size() + " sections loaded");
++
++ if (monitor.isCanceled()) { //user cancelled loading
++ monitor.close();
++ gui.setEnabled(true);
++ break; //HACK, should reset the whole environment before breaking
++ }
++
++ Map.Entry> entry = sectionIterator.next();
++ TreeMap value = entry.getValue();
++
++ List sectionKeys = new ArrayList(hm.keySet()); //all keys as defined in the existing ini
++ String sectionKey = entry.getKey().toUpperCase() + "::"; //The section string
++ filterList(sectionKey, sectionKeys); //filter keys for current section only (optimization)
++
++ LinkedList todos = new LinkedList();
++ LinkedList keys = new LinkedList();
++ LinkedList values = new LinkedList();
++
++ do {
++ todos.clear();
++ keys.clear();
++ values.clear();
++
++ Iterator> keyIterator = value.entrySet().iterator();
++ while(keyIterator.hasNext()) { //go through all keys of current section
++ final ControlledPanel mypanel = keyIterator.next().getValue();
++ //System.out.println("\t" + mypanel.getKey());
++
++ String pattern = mypanel.getHashKey();
++ pattern = pattern.replace("%","[a-zA-Z0-9_]+");
++ pattern = pattern.replace("#","[1-9]+[0-9]*"); //all integer numbers from 1 to infinity
++ //System.out.println("Current pattern: " + pattern);
++
++ //Loop through all defined keys of this section and compare them with pattern
++ Iterator keyit = sectionKeys.iterator();
++ while (keyit.hasNext()) {
++ final String currkey = keyit.next();
++ //System.out.println("sectionKeys contains: " + currkey);
++
++ if ((!usedKeys.contains(currkey)) && currkey.matches(pattern)) {
++ //Add mypanel to list of todos
++ //System.out.println("Adding panel for " + currkey);
++ todos.add(mypanel);
++ keys.add(currkey);
++ values.add(hm.get(currkey));
++
++ usedKeys.add(currkey);
++ }
++ }
++ }
++
++ for (int jj = 0; jj < todos.size(); jj++) {
++ //System.out.println("--> SETTING " + keys.get(jj) + " = " +values.get(jj));
++ todos.get(jj).set(hm, keys.get(jj), values.get(jj));
++ }
++ } while (todos.size() != 0);
++
++ if (progress_counter == panelControl.order.size()) gui.setEnabled(true);
++ }
++
++ //Now find out all keys that were not used in the hashmap
++ for (String key : hm.keySet()) {
++ if (!usedKeys.contains(key)) {
++ //System.out.println("Unknown key = " + key);
++ unusedKeys.add(key);
++ panelControl.setUnusedKeys(key, hm.get(key));
++ }
++ }
++
++ setComments(added_comments, comments);
++ }
++ };//thread
++ myrunner.start();
++ }
++
++ private static void filterList(String filter, List list) {
++ for (Iterator it=list.iterator(); it.hasNext();) {
++ final String next = it.next();
++ if (!next.startsWith(filter)) {
++ it.remove();
++ }
++ }
++ }
++
++ public static int closeFile(){
++ final int returnval = JOptionPane.showConfirmDialog(new JPanel(),
++ "You will lose all changes made to the current ini-file. " +
++ "Do you want this?", "Inishell is already open for " + application, JOptionPane.OK_CANCEL_OPTION);
++
++
++
++ if (returnval == JOptionPane.OK_OPTION) {
++ gui.closeAllTabs();
++ gui.rootNode = new PanelNode("");
++ application = null;
++ doc = null;
++ panelControl = null;
++ }
++
++ return returnval;
++ }
++
++
++ /**
++ * Puts the specified panel into the panel control.
++ * @param panel
++ */
++ public static void control(ControlledPanel panel) {
++ final String section = panel.getSection();
++ panelControl.put(section, panel);
++ }
++
++
++ /**
++ * Recursively traverses all children of the specified element
++ * and builds the corresponding panels.
++ *
++ * @param parentElement
++ * @param parentPanel
++ * @throws GUIBuildException
++ */
++ public static void recursiveBuild(Element parentElement, ControlledPanel parentPanel, boolean doSet) throws GUIBuildException {
++ recursiveBuild(parentElement, parentPanel, doSet, null, null, null);
++ }
++
++
++ public static void recursiveBuild(Element parentElement, ControlledPanel parentPanel, boolean doSet, HashMap hm, String key, String value) throws GUIBuildException {
++
++ /* get all child elements for the root */
++ final String[] tags = {"parameter", "frame"};
++ final Element[] parameterElements = XMLHelper.getElementArray(parentElement, tags);
++
++ for (final Element element : parameterElements) {
++ final String section = element.getAttribute("section");
++ ControlledPanel parameterPanel;
++
++ if (!panelControl.contains(section, element.getAttribute("key"))) {
++ //System.out.println("Adding through recursiveBuild: " + element.getAttribute("key"));
++ parameterPanel = ControlledPanel.createSingleParameterPanel(element, parentPanel);
++ parameterPanel.setKey(parameterPanel.getKey());
++
++ if (!element.getAttribute("template").equals("true")) {
++ //if (doSet) System.out.println("\tSETTING component key: " + key + " value: " + value);
++ if (doSet) parameterPanel.set(hm, parameterPanel.getKey(), value);
++
++ gui.addToTab(parameterPanel, section, parentPanel);
++ control(parameterPanel);
++ }
++ } else {
++ parameterPanel = panelControl.get(section, element.getAttribute("key"));
++ }
++
++ parameterPanel.hold();
++ recursiveBuild(element, parameterPanel, doSet);
++ }
++
++ gui.validate();
++ }
++
++ /**
++ * Recursively destructs child elements of the specified root.
++ *
++ * @param rootElement
++ * @param rootPanel
++ * @throws GUIBuildException
++ */
++ public static void recursiveDestruct(Element rootElement, ControlledPanel rootPanel)
++ throws GUIBuildException {
++
++ /* get all child elements for the root */
++ final Element[] parameterElements = XMLHelper.getElementArray(rootElement, "parameter");
++
++ for (final Element element : parameterElements) {
++ final String section = element.getAttribute("section");
++ final ControlledPanel parameterPanel = panelControl.get(section, element.getAttribute("key"));
++ recursiveDestruct(element, parameterPanel);
++
++ parameterPanel.release();
++ parameterPanel.close();
++
++ if (!parameterPanel.isNeeded()) {
++ gui.removeFromTab(parameterPanel, section, rootPanel);
++ }
++
++ }
++
++ gui.validate();
++ }
++
++
++ /**
++ * Opens a prompt for the path to save the ini file to. Then prints the ini
++ * to the path specified.
++ *
++ * @throws IOException
++ * @throws GUIBuildException
++ */
++ public static void printIOFile() throws IOException, GUIBuildException {
++ final FileNameExtensionFilter inifilter = new FileNameExtensionFilter(".ini files", "ini");
++
++ final JFileChooser filechooser = new JFileChooser(saveFilePath);
++ filechooser.setFileFilter(inifilter);
++
++ final int returnval = filechooser.showSaveDialog(new JPanel());
++
++ if (returnval == JFileChooser.APPROVE_OPTION) {
++ String path = filechooser.getSelectedFile().getAbsolutePath();
++ final String ext = getFileExtension(path).toLowerCase();
++ if(!ext.equals("ini")) {
++ path += ".ini";
++ }
++
++ if (filechooser.getSelectedFile().isDirectory()) return;
++ saveFilePath = filechooser.getSelectedFile().getParent();
++
++ panelControl.printToFile(path);
++ }
++ }
++}
+
+Property changes on: ../trunk-jpl/src/java/src/main/GUIBuilder.java
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/document-open-2.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/document-open-2.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/document-open-2.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/document-open-2.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/document-open-2.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/document-preview.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/document-preview.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/document-preview.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/document-preview.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/document-preview.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/document-export-4.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/document-export-4.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/document-export-4.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/document-export-4.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/document-export-4.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/config_schema.xsd
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/config_schema.xsd (revision 0)
++++ ../trunk-jpl/src/java/src/resources/config_schema.xsd (revision 17993)
+@@ -0,0 +1,141 @@
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
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++
++
++
++
++
++
+
+Property changes on: ../trunk-jpl/src/java/src/resources/config_schema.xsd
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/default_config.xml
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/default_config.xml (revision 0)
++++ ../trunk-jpl/src/java/src/resources/default_config.xml (revision 17993)
+@@ -0,0 +1,919 @@
++
++
++
++
++
++ Size in days of a chunk of data to read at once.
++
++
++
++
++ Alternate way of buffer centering: When rebuffering, the new date will be located BUFF_BEFORE days from the
++ beginning of the buffer (therefore, it takes a value in days).
++
++
++
++
++
++
++
++
++
++
++
++ coordinate system
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ plugin for METEO data
++
++
++
++
++
++ The name of the parameter to copy (e.g. TA, RH, VW, ISWR, etc)
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ plugin for Digital Elevation Model data
++
++
++
++
++
++
++
++
++ plugin for land cover data
++
++
++
++
++
++
++
++
++
++
++
++
++
++ plugin for 2D gridded data
++
++
++
++
++
++ filename for station number #
++
++
++
++
++ station id for the given station number #
++
++
++
++
++ Coordinates are given as "lat lon" or "xcoord ycoord epsg_code"
++
++
++
++
++
++
++ string containing the path to the xml files
++
++
++
++
++
++
++ database name, as provided by your database administrator
++
++
++ database user name
++
++
++ database password associated with the user name
++
++
++
++
++ OPTIONAL: use ANETZ stations to provide precipitations for normal IMIS stations.
++ Each IMIS station is associated with one or two ANETZ stations and does a weighted
++ average to get what should be its local precipitations
++
++
++
++
++ OPTIONAL: if set to false (default), all IMIS precipitation will be deleted (since IMIS stations don't have heated rain gauges, their precipitation measurements are not good in winter conditions). If set to true, it is strongly advised to use a FilterHNWMelt filter to detect snow melting in the rain gauge and perform winter conditions detection in the application.
++
++
++
++
++ if set to true, the SNOWPACK simulated Snow Water Equivalent from the database will be used to compute HNW. Data gaps greater than 3 hours on SWE will lead to unchanged hnw while all data that can properly be computed will overwrite hnw. (default=false)
++
++
++
++
++
++
++
++ string containing the path to the grib files
++
++
++ grib file extension, or none for no file extension (default: .grb)
++
++
++
++
++
++
++
++ string containing the path to the data files
++
++
++ absolute filename of the geotop.inpts file
++
++
++ prefix to append when generating a file name for reading
++
++
++
++
++
++ string containing the path to the data files
++
++
++ specifiy in which order the columns should be printed out
++
++
++
++
++
++ webserver running GSN with its port number and full path. For example:
++ http://montblanc.slf.ch:22001/services/A3DWebService
++
++
++ Should the connection go through a proxy? This is useful for servers
++ filtering on domains but usually not necessary.
++
++
++
++
++
++
++
++
++
++
++ string containing the path to the smet files
++
++
++
++
++
++
++ string representing path where SMET files should be saved
++
++
++
++
++
++
++
++
++
++ string containing the path to the SNOWPACK files
++
++
++ filename of the meta data file (in METEOPATH)
++
++
++
++ the number of measured snow temperatures provided
++
++
++
++ the number of solutes for which input data are provided
++
++
++
++
++
++
++
++
++
++
++
++
++
++ OPTIONAL: wind velocity to use for blowing and drifting snow is provided
++
++
++
++
++ OPTIONAL: measured new snow density is provided
++
++
++
++
++
++
++
++
++
++
++ generate names compatible with Alpine3D's grid viewer?
++
++
++ grid file extension, or none for no file extension (default: .asc)
++
++
++
++
++
++ x coordinate of the lower left corner of the grids
++
++
++ y coordinate of the lower left corner of the grids
++
++
++ grid file extension, or none for no file extension (default: .asc)
++
++
++
++
++
++ prefix to append when generating a file name for reading (ie: something like "laf" for Cosmo-Analysis-full domain)
++
++
++ grib file extension, or none for no file extension (default: .grb)
++
++
++
++
++
++
++
++ generate a world file for each output file? This file contains the geolocalization information
++
++
++
++
++ generate a legend?
++
++
++
++
++ autoscale color scale?
++
++
++
++
++ scaling algorithm (default=bilinear)
++
++
++ minimum dimensions of the PNG, like 640x480
++
++
++ maximum dimensions of the PNG, like 1024x768
++
++
++
++
++ generate a color indexed file (default=true)
++
++
++
++
++ optimize for speed (default=false)
++
++
++ number of colors in the palette (default=30)
++
++
++
++
++
++ lower left x coordinate
++
++
++ lower left y coordinate
++
++
++ cellsize in meters
++
++
++ minimum value in real world coordinates to match with the minimum value read out of the PGM file (such minimum being greater than 0 because 0 is NODATA)
++
++
++ maximum value in real world coordinates to match with the maximum value read out of the PGM file
++
++
++
++
++
++
++
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++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Mean average processing. The mean average filter returns the mean value of all values within a user given time window.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Median average processing. The median average filter returns the median value of all values within a user given time window.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Standard deviation filter. Values outside of mean ± 2 std_dev are rejected.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Median Absolute Deviation. Values outside of median ± 3 σ_MAD are rejected. <br>
++ See http://en.wikipedia.org/wiki/Median_absolute_deviation for more information.
++
++
++
++
++
++
++ The keyword "soft" maybe added, if the window position is allowed to be adjusted to the data present.
++ The two arguments may be preceded by the keywords "left", "center" or "right", indicating the window position.
++
++
++ Tukey 53H method A smooth time sequence is generated from the median, substracted from the original signal and
++ compared with the standard deviation. see "Despiking Acoustic Doppler Velocimeter Data", Derek G. Goring and Vladimir
++ L. Nikora, Journal of Hydraulic Engineering, 128, 1, 2002 The deviation factor coeffecient is currently hard-coded as k=1.5.
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++
++
++ Wind vector averaging. This calculates the vector average over a user given time period. Each wind vector
++ within this period is added and the final sum is normalized by the number of vectors that have been added.
++
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++ Alpha needs to be provided as last argument. Please note that the standard filter works with a left window!
++
++
++ Exponential smooting processing, exponential moving average s_0 = x_0 s_n = alpha*x_(t-1) + (1-alpha)*s_t-1
++
++
++
++
++
++
++ Activate "soft" if the window position is allowed to be adjusted, window position maybe left, center or right.
++ Minimal number of points in window and minimal time interval spanning the window (seconds) are required.
++ Please note that the standard filter works with a left window!
++
++
++ Weighted moving average smoothing such as: WMA = (1*X1 + 2*X2 + ... + n*Xn) / sum_of_weights
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ This implements the standard methods for precipitation correction as described in "WMO Solid Precipitation Measurement Intercomparison", B. Goodison, P. Louie and D. Yang, 872, 1998 as well as the overview given by "Literature Study on the Correction of Precipitation Measurements", Annette Wagner, 2009. The correction parameters for the shielded Hellmann gauge (German version) are from "Wind-induced Precipitation Undercatch of the Hellmann Gauges", Daqing Yang et al, Nordic Hydrology, 30, 1999, pp 57-80.
++
++
++
++
++
++
++ This applies a constant correction factor to the precipitation, one for pure snow and one for mixed precipitation. The following thresholds are used: pure snow below -2 C; mixed precipitation between -2 and +2 C; pure rain above 2 C. These threshold can be changed (see online documentation).
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ Affects resampling: expresses (in seconds) how far a valid point can be
++ searched for when re-interpolating a missing value
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ Detrend the measured data, fill the grid with the average over all the stations, reapply the elevation trend
++
++
++
++
++ Detrend the measured data, apply Inverse Distance Weighted average, reapply elevation trend
++
++
++
++ Same as IDW_LAPSE, but only considering a given number of neighboring stations
++
++
++
++
++
++ Base algorithm (do not forget to add the options for the base algorithm)
++
++ Distribute precipitation with a base algorithm (IDW_LAPSE by default), then reduce/remove precipitation on
++ steep slopes and correct with the local curvature. This is to simulate snow redistribution processes.
++
++
++
++ Variogram model
++
++ Ordinary kriging (EXPERIMENTAL)
++
++
++
++
++
++
+\ No newline at end of file
+
+Property changes on: ../trunk-jpl/src/java/src/resources/default_config.xml
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/file_ops.xcf
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/file_ops.xcf
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/file_ops.xcf (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/file_ops.xcf (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/file_ops.xcf
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/filesave.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/filesave.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/filesave.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/filesave.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/filesave.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/viewmag.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/viewmag.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/viewmag.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/viewmag.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/viewmag.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/ini_open.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/ini_open.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/ini_open.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/ini_open.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/ini_open.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/fileopen.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/fileopen.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/fileopen.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/fileopen.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/fileopen.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/xml_open.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/xml_open.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/xml_open.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/xml_open.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/xml_open.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/filesaveas.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/filesaveas.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/filesaveas.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/filesaveas.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/filesaveas.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/opensettings.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/opensettings.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/opensettings.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/opensettings.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/opensettings.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/reset.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/reset.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/reset.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/reset.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/reset.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/advancedsettings.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/advancedsettings.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/advancedsettings.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/advancedsettings.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/advancedsettings.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/mydocuments.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/mydocuments.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/mydocuments.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/mydocuments.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/mydocuments.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/readme.txt
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/readme.txt (revision 0)
++++ ../trunk-jpl/src/java/src/resources/icons/readme.txt (revision 17993)
+@@ -0,0 +1,10 @@
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++This copyright and license notice covers the images in this directory.
++************************************************************************
++
++TITLE: Crystal Project Icons
++AUTHOR: Everaldo Coelho
++SITE: http://www.everaldo.com
++CONTACT: everaldo@everaldo.com
++
++Copyright (c) 2006-2007 Everaldo Coelho.
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/readme.txt
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/icons/kghostview.png
+===================================================================
+Cannot display: file marked as a binary type.
+svn:mime-type = application/octet-stream
+Index: ../trunk-jpl/src/java/src/resources/icons/kghostview.png
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/icons/kghostview.png (revision 17992)
++++ ../trunk-jpl/src/java/src/resources/icons/kghostview.png (revision 17993)
+
+Property changes on: ../trunk-jpl/src/java/src/resources/icons/kghostview.png
+___________________________________________________________________
+Added: svn:mime-type
+## -0,0 +1 ##
++application/octet-stream
+\ No newline at end of property
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/src/resources/config_schema-0.1.1.xsd
+===================================================================
+--- ../trunk-jpl/src/java/src/resources/config_schema-0.1.1.xsd (revision 0)
++++ ../trunk-jpl/src/java/src/resources/config_schema-0.1.1.xsd (revision 17993)
+@@ -0,0 +1,154 @@
++
++
++
++
++
++
++
++
++
++
++
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++
++
++
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++
++
++
++
+
+Property changes on: ../trunk-jpl/src/java/src/resources/config_schema-0.1.1.xsd
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/COPYING
+===================================================================
+--- ../trunk-jpl/src/java/COPYING (revision 0)
++++ ../trunk-jpl/src/java/COPYING (revision 17993)
+@@ -0,0 +1,674 @@
++ GNU GENERAL PUBLIC LICENSE
++ Version 3, 29 June 2007
++
++ Copyright (C) 2007 Free Software Foundation, Inc.
++ Everyone is permitted to copy and distribute verbatim copies
++ of this license document, but changing it is not allowed.
++
++ Preamble
++
++ The GNU General Public License is a free, copyleft license for
++software and other kinds of works.
++
++ The licenses for most software and other practical works are designed
++to take away your freedom to share and change the works. By contrast,
++the GNU General Public License is intended to guarantee your freedom to
++share and change all versions of a program--to make sure it remains free
++software for all its users. We, the Free Software Foundation, use the
++GNU General Public License for most of our software; it applies also to
++any other work released this way by its authors. You can apply it to
++your programs, too.
++
++ When we speak of free software, we are referring to freedom, not
++price. Our General Public Licenses are designed to make sure that you
++have the freedom to distribute copies of free software (and charge for
++them if you wish), that you receive source code or can get it if you
++want it, that you can change the software or use pieces of it in new
++free programs, and that you know you can do these things.
++
++ To protect your rights, we need to prevent others from denying you
++these rights or asking you to surrender the rights. Therefore, you have
++certain responsibilities if you distribute copies of the software, or if
++you modify it: responsibilities to respect the freedom of others.
++
++ For example, if you distribute copies of such a program, whether
++gratis or for a fee, you must pass on to the recipients the same
++freedoms that you received. You must make sure that they, too, receive
++or can get the source code. And you must show them these terms so they
++know their rights.
++
++ Developers that use the GNU GPL protect your rights with two steps:
++(1) assert copyright on the software, and (2) offer you this License
++giving you legal permission to copy, distribute and/or modify it.
++
++ For the developers' and authors' protection, the GPL clearly explains
++that there is no warranty for this free software. For both users' and
++authors' sake, the GPL requires that modified versions be marked as
++changed, so that their problems will not be attributed erroneously to
++authors of previous versions.
++
++ Some devices are designed to deny users access to install or run
++modified versions of the software inside them, although the manufacturer
++can do so. This is fundamentally incompatible with the aim of
++protecting users' freedom to change the software. The systematic
++pattern of such abuse occurs in the area of products for individuals to
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++stand ready to extend this provision to those domains in future versions
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++
++ Finally, every program is threatened constantly by software patents.
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++patents cannot be used to render the program non-free.
++
++ The precise terms and conditions for copying, distribution and
++modification follow.
++
++ TERMS AND CONDITIONS
++
++ 0. Definitions.
++
++ "This License" refers to version 3 of the GNU General Public License.
++
++ "Copyright" also means copyright-like laws that apply to other kinds of
++works, such as semiconductor masks.
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++ Conveying under any other circumstances is permitted solely under
++the conditions stated below. Sublicensing is not allowed; section 10
++makes it unnecessary.
++
++ 3. Protecting Users' Legal Rights From Anti-Circumvention Law.
++
++ No covered work shall be deemed part of an effective technological
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++11 of the WIPO copyright treaty adopted on 20 December 1996, or
++similar laws prohibiting or restricting circumvention of such
++measures.
++
++ When you convey a covered work, you waive any legal power to forbid
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++technological measures.
++
++ 4. Conveying Verbatim Copies.
++
++ You may convey verbatim copies of the Program's source code as you
++receive it, in any medium, provided that you conspicuously and
++appropriately publish on each copy an appropriate copyright notice;
++keep intact all notices stating that this License and any
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++keep intact all notices of the absence of any warranty; and give all
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++
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++ 5. Conveying Modified Source Versions.
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++ it, and giving a relevant date.
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++ d) If the work has interactive user interfaces, each must display
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++parts of the aggregate.
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++ 6. Conveying Non-Source Forms.
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++ You may convey a covered work in object code form under the terms
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++ conveying of source, or (2) access to copy the
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++ alternative is allowed only occasionally and noncommercially, and
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++ d) Convey the object code by offering access from a designated
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++ A "User Product" is either (1) a "consumer product", which means any
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++
++ 7. Additional Terms.
++
++ "Additional permissions" are terms that supplement the terms of this
++License by making exceptions from one or more of its conditions.
++Additional permissions that are applicable to the entire Program shall
++be treated as though they were included in this License, to the extent
++that they are valid under applicable law. If additional permissions
++apply only to part of the Program, that part may be used separately
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++this License without regard to the additional permissions.
++
++ When you convey a copy of a covered work, you may at your option
++remove any additional permissions from that copy, or from any part of
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++removal in certain cases when you modify the work.) You may place
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++that material) supplement the terms of this License with terms:
++
++ a) Disclaiming warranty or limiting liability differently from the
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++ All other non-permissive additional terms are considered "further
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++restriction, you may remove that term. If a license document contains
++a further restriction but permits relicensing or conveying under this
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++
++ Additional terms, permissive or non-permissive, may be stated in the
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++the above requirements apply either way.
++
++ 8. Termination.
++
++ You may not propagate or modify a covered work except as expressly
++provided under this License. Any attempt otherwise to propagate or
++modify it is void, and will automatically terminate your rights under
++this License (including any patent licenses granted under the third
++paragraph of section 11).
++
++ However, if you cease all violation of this License, then your
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++finally terminates your license, and (b) permanently, if the copyright
++holder fails to notify you of the violation by some reasonable means
++prior to 60 days after the cessation.
++
++ Moreover, your license from a particular copyright holder is
++reinstated permanently if the copyright holder notifies you of the
++violation by some reasonable means, this is the first time you have
++received notice of violation of this License (for any work) from that
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++your receipt of the notice.
++
++ Termination of your rights under this section does not terminate the
++licenses of parties who have received copies or rights from you under
++this License. If your rights have been terminated and not permanently
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++material under section 10.
++
++ 9. Acceptance Not Required for Having Copies.
++
++ You are not required to accept this License in order to receive or
++run a copy of the Program. Ancillary propagation of a covered work
++occurring solely as a consequence of using peer-to-peer transmission
++to receive a copy likewise does not require acceptance. However,
++nothing other than this License grants you permission to propagate or
++modify any covered work. These actions infringe copyright if you do
++not accept this License. Therefore, by modifying or propagating a
++covered work, you indicate your acceptance of this License to do so.
++
++ 10. Automatic Licensing of Downstream Recipients.
++
++ Each time you convey a covered work, the recipient automatically
++receives a license from the original licensors, to run, modify and
++propagate that work, subject to this License. You are not responsible
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++
++ An "entity transaction" is a transaction transferring control of an
++organization, or substantially all assets of one, or subdividing an
++organization, or merging organizations. If propagation of a covered
++work results from an entity transaction, each party to that
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++the predecessor has it or can get it with reasonable efforts.
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++ You may not impose any further restrictions on the exercise of the
++rights granted or affirmed under this License. For example, you may
++not impose a license fee, royalty, or other charge for exercise of
++rights granted under this License, and you may not initiate litigation
++(including a cross-claim or counterclaim in a lawsuit) alleging that
++any patent claim is infringed by making, using, selling, offering for
++sale, or importing the Program or any portion of it.
++
++ 11. Patents.
++
++ A "contributor" is a copyright holder who authorizes use under this
++License of the Program or a work on which the Program is based. The
++work thus licensed is called the contributor's "contributor version".
++
++ A contributor's "essential patent claims" are all patent claims
++owned or controlled by the contributor, whether already acquired or
++hereafter acquired, that would be infringed by some manner, permitted
++by this License, of making, using, or selling its contributor version,
++but do not include claims that would be infringed only as a
++consequence of further modification of the contributor version. For
++purposes of this definition, "control" includes the right to grant
++patent sublicenses in a manner consistent with the requirements of
++this License.
++
++ Each contributor grants you a non-exclusive, worldwide, royalty-free
++patent license under the contributor's essential patent claims, to
++make, use, sell, offer for sale, import and otherwise run, modify and
++propagate the contents of its contributor version.
++
++ In the following three paragraphs, a "patent license" is any express
++agreement or commitment, however denominated, not to enforce a patent
++(such as an express permission to practice a patent or covenant not to
++sue for patent infringement). To "grant" such a patent license to a
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++ If you convey a covered work, knowingly relying on a patent license,
++and the Corresponding Source of the work is not available for anyone
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++then you must either (1) cause the Corresponding Source to be so
++available, or (2) arrange to deprive yourself of the benefit of the
++patent license for this particular work, or (3) arrange, in a manner
++consistent with the requirements of this License, to extend the patent
++license to downstream recipients. "Knowingly relying" means you have
++actual knowledge that, but for the patent license, your conveying the
++covered work in a country, or your recipient's use of the covered work
++in a country, would infringe one or more identifiable patents in that
++country that you have reason to believe are valid.
++
++ If, pursuant to or in connection with a single transaction or
++arrangement, you convey, or propagate by procuring conveyance of, a
++covered work, and grant a patent license to some of the parties
++receiving the covered work authorizing them to use, propagate, modify
++or convey a specific copy of the covered work, then the patent license
++you grant is automatically extended to all recipients of the covered
++work and works based on it.
++
++ A patent license is "discriminatory" if it does not include within
++the scope of its coverage, prohibits the exercise of, or is
++conditioned on the non-exercise of one or more of the rights that are
++specifically granted under this License. You may not convey a covered
++work if you are a party to an arrangement with a third party that is
++in the business of distributing software, under which you make payment
++to the third party based on the extent of your activity of conveying
++the work, and under which the third party grants, to any of the
++parties who would receive the covered work from you, a discriminatory
++patent license (a) in connection with copies of the covered work
++conveyed by you (or copies made from those copies), or (b) primarily
++for and in connection with specific products or compilations that
++contain the covered work, unless you entered into that arrangement,
++or that patent license was granted, prior to 28 March 2007.
++
++ Nothing in this License shall be construed as excluding or limiting
++any implied license or other defenses to infringement that may
++otherwise be available to you under applicable patent law.
++
++ 12. No Surrender of Others' Freedom.
++
++ If conditions are imposed on you (whether by court order, agreement or
++otherwise) that contradict the conditions of this License, they do not
++excuse you from the conditions of this License. If you cannot convey a
++covered work so as to satisfy simultaneously your obligations under this
++License and any other pertinent obligations, then as a consequence you may
++not convey it at all. For example, if you agree to terms that obligate you
++to collect a royalty for further conveying from those to whom you convey
++the Program, the only way you could satisfy both those terms and this
++License would be to refrain entirely from conveying the Program.
++
++ 13. Use with the GNU Affero General Public License.
++
++ Notwithstanding any other provision of this License, you have
++permission to link or combine any covered work with a work licensed
++under version 3 of the GNU Affero General Public License into a single
++combined work, and to convey the resulting work. The terms of this
++License will continue to apply to the part which is the covered work,
++but the special requirements of the GNU Affero General Public License,
++section 13, concerning interaction through a network will apply to the
++combination as such.
++
++ 14. Revised Versions of this License.
++
++ The Free Software Foundation may publish revised and/or new versions of
++the GNU General Public License from time to time. Such new versions will
++be similar in spirit to the present version, but may differ in detail to
++address new problems or concerns.
++
++ Each version is given a distinguishing version number. If the
++Program specifies that a certain numbered version of the GNU General
++Public License "or any later version" applies to it, you have the
++option of following the terms and conditions either of that numbered
++version or of any later version published by the Free Software
++Foundation. If the Program does not specify a version number of the
++GNU General Public License, you may choose any version ever published
++by the Free Software Foundation.
++
++ If the Program specifies that a proxy can decide which future
++versions of the GNU General Public License can be used, that proxy's
++public statement of acceptance of a version permanently authorizes you
++to choose that version for the Program.
++
++ Later license versions may give you additional or different
++permissions. However, no additional obligations are imposed on any
++author or copyright holder as a result of your choosing to follow a
++later version.
++
++ 15. Disclaimer of Warranty.
++
++ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
++APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
++HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
++OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
++THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
++PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
++IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
++ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
++
++ 16. Limitation of Liability.
++
++ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
++WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
++THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
++GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
++USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
++DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
++PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
++EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
++SUCH DAMAGES.
++
++ 17. Interpretation of Sections 15 and 16.
++
++ If the disclaimer of warranty and limitation of liability provided
++above cannot be given local legal effect according to their terms,
++reviewing courts shall apply local law that most closely approximates
++an absolute waiver of all civil liability in connection with the
++Program, unless a warranty or assumption of liability accompanies a
++copy of the Program in return for a fee.
++
++ END OF TERMS AND CONDITIONS
++
++ How to Apply These Terms to Your New Programs
++
++ If you develop a new program, and you want it to be of the greatest
++possible use to the public, the best way to achieve this is to make it
++free software which everyone can redistribute and change under these terms.
++
++ To do so, attach the following notices to the program. It is safest
++to attach them to the start of each source file to most effectively
++state the exclusion of warranty; and each file should have at least
++the "copyright" line and a pointer to where the full notice is found.
++
++
++ Copyright (C)
++
++ This program is free software: you can redistribute it and/or modify
++ it under the terms of the GNU General Public License as published by
++ the Free Software Foundation, either version 3 of the License, or
++ (at your option) any later version.
++
++ This program is distributed in the hope that it will be useful,
++ but WITHOUT ANY WARRANTY; without even the implied warranty of
++ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
++ GNU General Public License for more details.
++
++ You should have received a copy of the GNU General Public License
++ along with this program. If not, see .
++
++Also add information on how to contact you by electronic and paper mail.
++
++ If the program does terminal interaction, make it output a short
++notice like this when it starts in an interactive mode:
++
++ Copyright (C)
++ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
++ This is free software, and you are welcome to redistribute it
++ under certain conditions; type `show c' for details.
++
++The hypothetical commands `show w' and `show c' should show the appropriate
++parts of the General Public License. Of course, your program's commands
++might be different; for a GUI interface, you would use an "about box".
++
++ You should also get your employer (if you work as a programmer) or school,
++if any, to sign a "copyright disclaimer" for the program, if necessary.
++For more information on this, and how to apply and follow the GNU GPL, see
++.
++
++ The GNU General Public License does not permit incorporating your program
++into proprietary programs. If your program is a subroutine library, you
++may consider it more useful to permit linking proprietary applications with
++the library. If this is what you want to do, use the GNU Lesser General
++Public License instead of this License. But first, please read
++.
+
+Property changes on: ../trunk-jpl/src/java/COPYING
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/java/build.xml
+===================================================================
+--- ../trunk-jpl/src/java/build.xml (revision 0)
++++ ../trunk-jpl/src/java/build.xml (revision 17993)
+@@ -0,0 +1,126 @@
++
++
++ Build and run the inishell Application from the command line.
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++
++ You can use the following targets:
++
++ help : (default) Prints this message
++ init : create necessary directories
++ clean : Deletes work directories
++ compile : Compiles into class files
++ dist : pack all necessary files into a JAR file
++ issm : create inishell GUI using issm.xml
++ snowpack : dist tailored for snowpack
++ meteoio : dist tailored for meteoio
++ run : run the previously compiled version
++ pack : pack all in a zip file for a release
++
++
++
++
++
++
++
++
++
++
++
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++
+
+Property changes on: ../trunk-jpl/src/java/build.xml
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
+Index: ../trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp (revision 17992)
++++ ../trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp (revision 17993)
+@@ -88,10 +88,221 @@
+ }/*}}}*/
+ ElementMatrix* LevelsetAnalysis::CreateKMatrix(Element* element){/*{{{*/
+
+- _error_("not implemented yet");
++ if(!element->IsOnBase()) return NULL;
++ Element* basalelement = element->SpawnBasalElement();
++
++ /*Intermediaries */
++ int dim, domaintype;
++ int i, row, col;
++ IssmDouble kappa;
++ IssmDouble Jdet, dt, D_scalar;
++ IssmDouble h,hx,hy,hz;
++ IssmDouble vel, calvingrate;
++ IssmDouble norm_dlsf;
++ IssmDouble* xyz_list = NULL;
++
++ /*Get problem dimension*/
++ basalelement->FindParam(&domaintype,DomainTypeEnum);
++ switch(domaintype){
++ case Domain2DverticalEnum: dim = 1; break;
++ case Domain2DhorizontalEnum: dim = 2; break;
++ case Domain3DEnum: dim = 2; break;
++ default: _error_("mesh "<GetNumberOfNodes();
++
++ /*Initialize Element vector and other vectors*/
++ ElementMatrix* Ke = basalelement->NewElementMatrix();
++ IssmDouble* basis = xNew(numnodes);
++ IssmDouble* B = xNew(dim*numnodes);
++ IssmDouble* Bprime = xNew(dim*numnodes);
++ IssmDouble* D = xNew(dim*dim);
++ IssmDouble* v = xNew(dim);
++ IssmDouble* w = xNew(dim);
++ IssmDouble* c = xNew(dim);
++ IssmDouble* dlsf = xNew(dim);
++
++ /*Retrieve all inputs and parameters*/
++ basalelement->GetVerticesCoordinates(&xyz_list);
++ basalelement->FindParam(&dt,TimesteppingTimeStepEnum);
++ Input* vx_input=NULL;
++ Input* vy_input=NULL;
++ if(domaintype==Domain2DhorizontalEnum){
++ vx_input=basalelement->GetInput(VxEnum); _assert_(vx_input);
++ vy_input=basalelement->GetInput(VyEnum); _assert_(vy_input);
++ }
++ else{
++ if(dim==1){
++ vx_input=basalelement->GetInput(VxEnum); _assert_(vx_input);
++ }
++ if(dim==2){
++ vx_input=basalelement->GetInput(VxAverageEnum); _assert_(vx_input);
++ vy_input=basalelement->GetInput(VyAverageEnum); _assert_(vy_input);
++ }
++ }
++
++ Input* lsf_slopex_input = basalelement->GetInput(LevelsetfunctionSlopeXEnum); _assert_(lsf_slopex_input);
++ Input* lsf_slopey_input = basalelement->GetInput(LevelsetfunctionSlopeYEnum); _assert_(lsf_slopey_input);
++ Input* calvingrate_input = basalelement->GetInput(MasstransportCalvingrateEnum); _assert_(calvingrate_input);
++
++ /* Start looping on the number of gaussian points: */
++ Gauss* gauss=basalelement->NewGauss(2);
++ for(int ig=gauss->begin();igend();ig++){
++ gauss->GaussPoint(ig);
++
++ basalelement->JacobianDeterminant(&Jdet,xyz_list,gauss);
++ D_scalar=gauss->weight*Jdet;
++
++ /* Transient */
++ if(dt!=0.){
++ basalelement->NodalFunctions(basis,gauss);
++ TripleMultiply(basis,numnodes,1,0,
++ &D_scalar,1,1,0,
++ basis,1,numnodes,0,
++ &Ke->values[0],1);
++ D_scalar*=dt;
++ }
++
++ /* Advection */
++ GetB(B,basalelement,xyz_list,gauss);
++ GetBprime(Bprime,basalelement,xyz_list,gauss);
++ vx_input->GetInputValue(&v[0],gauss); // in 3D case, add mesh velocity
++ vy_input->GetInputValue(&v[1],gauss);
++ lsf_slopex_input->GetInputValue(&dlsf[0],gauss);
++ lsf_slopey_input->GetInputValue(&dlsf[1],gauss);
++ calvingrate_input->GetInputValue(&calvingrate,gauss);
++
++ norm_dlsf=0.;
++ for(i=0;i1.e-10)
++ for(i=0;ivalues[0],1);
++
++ /* Stabilization */
++ int stabilization=2;
++ vel=0.;
++ for(i=0;iElementSizes(&hx,&hy,&hz);
++ h=sqrt( pow(hx*v[0]/vel,2) + pow(hy*v[1]/vel,2) );
++ kappa=h*vel/2.;
++ for(row=0;rowvalues[0],1);
++ break;
++ case 2:
++ /* Streamline Upwinding */
++ basalelement->ElementSizes(&hx,&hy,&hz);
++ h=sqrt( pow(hx*v[0]/vel,2) + pow(hy*v[1]/vel,2) );
++ for(row=0;rowvalues[0],1);
++ break;
++ default:
++ _error_("unknown type of stabilization in LevelsetAnalysis.cpp");
++ }
++ }
++
++ /*Clean up and return*/
++ xDelete(xyz_list);
++ xDelete(basis);
++ xDelete(B);
++ xDelete(D);
++ xDelete(Bprime);
++ xDelete(v);
++ xDelete(w);
++ xDelete(c);
++ xDelete(dlsf);
++ delete gauss;
++ if(domaintype!=Domain2DhorizontalEnum){basalelement->DeleteMaterials(); delete basalelement;};
++ return Ke;
+ }/*}}}*/
+ ElementVector* LevelsetAnalysis::CreatePVector(Element* element){/*{{{*/
+- _error_("not implemented yet");
++
++ if(!element->IsOnBase()) return NULL;
++ Element* basalelement = element->SpawnBasalElement();
++
++ /*Intermediaries */
++ int i, ig, domaintype;
++ IssmDouble Jdet,dt;
++ IssmDouble lsf;
++ IssmDouble* xyz_list = NULL;
++
++ /*Fetch number of nodes and dof for this finite element*/
++ int numnodes = basalelement->GetNumberOfNodes();
++
++ /*Initialize Element vector*/
++ ElementVector* pe = basalelement->NewElementVector();
++ basalelement->FindParam(&dt,TimesteppingTimeStepEnum);
++
++ if(dt!=0.){
++ /*Initialize basis vector*/
++ IssmDouble* basis = xNew(numnodes);
++
++ /*Retrieve all inputs and parameters*/
++ basalelement->GetVerticesCoordinates(&xyz_list);
++ Input* levelset_input = basalelement->GetInput(MaskIceLevelsetEnum); _assert_(levelset_input);
++
++ /* Start looping on the number of gaussian points: */
++ Gauss* gauss=basalelement->NewGauss(2);
++ for(ig=gauss->begin();igend();ig++){
++ gauss->GaussPoint(ig);
++
++ basalelement->JacobianDeterminant(&Jdet,xyz_list,gauss);
++ basalelement->NodalFunctions(basis,gauss);
++
++ /* old function value */
++ levelset_input->GetInputValue(&lsf,gauss);
++ for(i=0;ivalues[i]+=Jdet*gauss->weight*lsf*basis[i];
++ }
++
++ /*Clean up and return*/
++ xDelete(xyz_list);
++ xDelete(basis);
++ basalelement->FindParam(&domaintype,DomainTypeEnum);
++ if(domaintype!=Domain2DhorizontalEnum){basalelement->DeleteMaterials(); delete basalelement;};
++ delete gauss;
++ }
++
++ return pe;
+ }/*}}}*/
+ void LevelsetAnalysis::GetSolutionFromInputs(Vector* solution,Element* element){/*{{{*/
+ _error_("not implemented yet");
Index: /issm/oecreview/Archive/17984-18295/ISSM-17993-17994.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-17993-17994.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-17993-17994.diff (revision 18296)
@@ -0,0 +1,13 @@
+Index: ../trunk-jpl/src/m/classes/model.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/model.py (revision 17993)
++++ ../trunk-jpl/src/m/classes/model.py (revision 17994)
+@@ -656,7 +656,7 @@
+ #connectivity
+ md.mesh.elementconnectivity=numpy.tile(md.mesh.elementconnectivity,(numlayers-1,1))
+ md.mesh.elementconnectivity[numpy.nonzero(md.mesh.elementconnectivity==0)]=-sys.maxint-1
+- if not numpy.isnan(md.mesh.lementconnectivity).all():
++ if not numpy.isnan(md.mesh.elementconnectivity).all():
+ for i in xrange(1,numlayers-1):
+ md.mesh.elementconnectivity[i*md.mesh.numberofelements2d:(i+1)*md.mesh.numberofelements2d,:] \
+ =md.mesh.elementconnectivity[i*md.mesh.numberofelements2d:(i+1)*md.mesh.numberofelements2d,:]+md.mesh.numberofelements2d
Index: /issm/oecreview/Archive/17984-18295/ISSM-17994-17995.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-17994-17995.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-17994-17995.diff (revision 18296)
@@ -0,0 +1,1110 @@
+Index: ../trunk-jpl/src/c/modules/EdgeDetectionx/EdgeDetectionx.h
+===================================================================
+--- ../trunk-jpl/src/c/modules/EdgeDetectionx/EdgeDetectionx.h (revision 17994)
++++ ../trunk-jpl/src/c/modules/EdgeDetectionx/EdgeDetectionx.h (revision 17995)
+@@ -1,14 +0,0 @@
+-/*!\file: EdgeDetectionx.h
+- * \brief header file for EdgeDetectionx module
+- */
+-
+-#ifndef _EDGEDETECTIONX_H_
+-#define _EDGEDETECTIONX_H_
+-
+-#include
+-#include "../../classes/classes.h"
+-
+-/* local prototypes: */
+-void EdgeDetectionx(Contours* contours, bool* image, int M, int N);
+-
+-#endif /* _EDGEDETECTIONX_H */
+Index: ../trunk-jpl/src/c/modules/EdgeDetectionx/EdgeDetectionx.cpp
+===================================================================
+--- ../trunk-jpl/src/c/modules/EdgeDetectionx/EdgeDetectionx.cpp (revision 17994)
++++ ../trunk-jpl/src/c/modules/EdgeDetectionx/EdgeDetectionx.cpp (revision 17995)
+@@ -1,35 +0,0 @@
+-/*!\file EdgeDetectionx
+- * \brief: x code for EdgeDetection module
+- */
+-
+-/*Header files: {{{*/
+-#include "./EdgeDetectionx.h"
+-#include "../../shared/shared.h"
+-#include "../../toolkits/toolkits.h"
+-/*}}}*/
+-
+-void EdgeDetectionx(Contours* contours, bool* image, int M, int N){
+-
+- /*intermediary: */
+- int i;
+-
+- _assert_(contours);
+-
+- /*output: */
+- Contour* contour=NULL;
+- IssmPDouble* x=NULL;
+- IssmPDouble* y=NULL;
+-
+- /*Create bogus contour: */
+- x=xNewZeroInit(10);
+- y=xNewZeroInit(10);
+- for(i=0;i<10;i++){
+- x[i]=(IssmPDouble)i;
+- y[i]=(IssmPDouble)i;
+- }
+- contour= new Contour(1,10,x,y,true);
+-
+- /*Add contour to our dataset of contours: */
+- contours->AddObject(contour);
+-
+-}
+Index: ../trunk-jpl/src/c/modules/AverageFilterx/AverageFilterx.cpp
+===================================================================
+--- ../trunk-jpl/src/c/modules/AverageFilterx/AverageFilterx.cpp (revision 17994)
++++ ../trunk-jpl/src/c/modules/AverageFilterx/AverageFilterx.cpp (revision 17995)
+@@ -1,43 +0,0 @@
+-/*!\file: AverageFilterx.cpp
+- * \brief plug missing values of a double* array, using interpolation techniques. This
+- * is an adaptation of Dr. Crippen's routine (Jet Propulsion Lab, see AverageFilterCrippen.c
+- * for more details.
+- */
+-
+-#include
+-#include
+-#include "./AverageFilterx.h"
+-#include "../../shared/shared.h"
+-
+-int AverageFilterx(double** pimageout,double* image, int lines,int samps,int smooth){
+-
+- double temp;
+- int numvalues;
+- long i, j;
+- int pix1, pix2;
+-
+- /*output: */
+- double* imageout=NULL;
+-
+- imageout=xNew(samps*lines);
+-
+- for ( i = 0; i < lines; i++ ){
+- for ( j = 0; j < samps; j++ ){
+- temp=0;
+- numvalues=0;
+- for ( pix1 = -smooth; pix1 < smooth+1; pix1++ ){
+- for ( pix2 = -smooth; pix2 < smooth+1; pix2++ ){
+- if( i+pix1 < 0 || i+pix1 > lines-1 || j+pix2 < 0 || j+pix2 > samps-1) continue;
+- numvalues=numvalues+1;
+- temp=temp+*(image+samps*(i+pix1)+j+pix2);
+- }
+- }
+- *(imageout+samps*(i)+j)=temp/numvalues;
+- }
+- }
+-
+- /*Assign output pointers: */
+- *pimageout=imageout;
+-
+- return 1;
+-}
+Index: ../trunk-jpl/src/c/modules/AverageFilterx/AverageFilterx.h
+===================================================================
+--- ../trunk-jpl/src/c/modules/AverageFilterx/AverageFilterx.h (revision 17994)
++++ ../trunk-jpl/src/c/modules/AverageFilterx/AverageFilterx.h (revision 17995)
+@@ -1,14 +0,0 @@
+-/*
+- AverageFilterx.h
+-*/
+-
+-#ifndef AVERAGEFILTERX_H
+-#define AVERAGEFILTERX_H
+-
+-//#define _DEBUG_
+-//#define _DEBUG2_
+-
+-/* local prototypes: */
+-int AverageFilterx(double** pimageout,double* imagein, int lines,int samp,int smooth);
+-
+-#endif /* AVERAGEFILTERX_H */
+Index: ../trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.h
+===================================================================
+--- ../trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.h (revision 17994)
++++ ../trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.h (revision 17995)
+@@ -1,14 +0,0 @@
+-/*
+- HoleFillerx.h
+-*/
+-
+-#ifndef HOLEFILLERX_H
+-#define HOLEFILLERX_H
+-
+-//#define _DEBUG_
+-//#define _DEBUG2_
+-
+-/* local prototypes: */
+-int HoleFillerx(double** pimageout,double* imagein, int lines,int samp,int smooth);
+-
+-#endif /* HOLEFILLERX_H */
+Index: ../trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.cpp
+===================================================================
+--- ../trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.cpp (revision 17994)
++++ ../trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.cpp (revision 17995)
+@@ -1,347 +0,0 @@
+-/*!\file: HoleFillerx.cpp
+- * \brief plug missing values of a double* array, using interpolation techniques. This
+- * is an adaptation of Dr. Crippen's routine (Jet Propulsion Lab)
+- */
+-
+-#include
+-#include
+-#include "./HoleFillerx.h"
+-#include "../../shared/shared.h"
+-
+-int HoleFillerx(double** pimageout,double* image, int lines,int samps,int smooth){
+-
+- long infinit;
+- double temp;
+- long i, j, k, l, ii, jj;
+- long iii, jjj;
+- long test;
+- float nsteps, ssteps, wsteps, esteps;
+- float nwsteps, nesteps, swsteps, sesteps;
+- float north, south, east, west;
+- float nw, sw, ne, se, elev, range;
+- float nnesteps, enesteps, esesteps, ssesteps;
+- float sswsteps, wswsteps, wnwsteps, nnwsteps;
+- float nne, ene, ese, sse;
+- float ssw, wsw, wnw, nnw;
+- float sum;
+-
+- time_t t1, t2;
+-
+- /*output: */
+- double* imageout=NULL;
+-
+- double* image2=NULL;
+- double* image3=NULL;
+- double* image4=NULL;
+-
+- /*^^^^^^^^^^^^^ Remove pixels close to the holes ^^^^^^^^^^^^^*/
+- image2 = xNew(lines*samps);
+- memcpy(image2,image,lines*samps*sizeof(double));
+-
+- for ( i = 0; i < lines; i++ ){
+- for ( j = 0; j < samps; j++ ){
+- if ( *(image+i*samps+j) == 0 ){
+- if ( (j > 3) && (j < samps-4) && (i > 3) && (i < lines-4)){
+- for ( k = 0; k < 4; k++ ){
+- for ( l = 0; l < 4; l++ ){
+- *(image2+samps*(i+k)+j+l)=0;
+- *(image2+samps*(i-k)+j+l)=0;
+- *(image2+samps*(i+k)+j-l)=0;
+- *(image2+samps*(i-k)+j-l)=0;
+-
+- }
+- }
+- }
+- }
+- }
+- }
+-
+- image3 = xNew(lines*samps);
+- memcpy(image3,image2,lines*samps*sizeof(double));
+-
+- #ifdef _DEBUG2_
+- counter=0;
+- for ( i = 0; i < lines; i++ ) {
+- for ( j = 0; j < samps; j++ ){
+- if ( *(image2+i*samps+j) != 0 ) {
+- counter++;
+- }
+- }
+- }
+- _printf_( "" << "\n");
+- _printf_("Number of zeroes remaining: " << lines*samps-counter);
+- fflush( stdout );
+- #endif
+-
+- goto afterfirst2;
+-
+- again2:
+-
+- #ifdef _DEBUG2_
+- counter=0;
+- for ( i = 0; i < lines; i++ ) {
+- for ( j = 0; j < samps; j++ ){
+- if ( *(image2+i*samps+j) != 0 ) {
+- counter++;
+- }
+- }
+- }
+- // n u m b e r o f z e r o e s r e m a i n i n g : 1 2 3 4 5 6 7 8 9 10
+- _printf_( "\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b" );
+- _printf_("Number of zeroes remaining: " << lines*samps-counter);
+- fflush( stdout );
+- #endif
+-
+- afterfirst2:
+-
+-/***************** FIRST RUN *********************/
+-/*
+-fprintf ( stdout, "First Application: " ); time(&t2); _printf_( ctime(&t2) );
+-*/
+- for ( i = 0; i < lines; i++ ){
+- for ( j = 0; j < samps; j++ ){
+- if ( *(image2+i*samps+j) != 0 ){
+- *(image3+samps*i+j) = *(image2+i*samps+j);
+- continue;
+- }
+-
+- /* Count All Neighbors Test */
+- test = 0;
+- for ( ii = i-1; ii < i+2; ii++ ){
+- for ( jj = j-1; jj < j+2; jj++ ){
+- if (( ii < 0 ) || ( ii >= lines )) continue;
+- if (( jj < 0 ) || ( jj >= samps )) continue;
+- if ( *(image2+ii*samps+jj) != 0 ) test += 1;
+- }
+- }
+- if ( test < 3 ){
+- *(image3+samps*i+j) = 0;
+- continue;
+- }
+-
+- /* For void edge pixels: */
+-
+- nsteps = 0.0; ssteps = 0.0; esteps = 0.0; wsteps = 0.0;
+- nwsteps = 0.0; nesteps = 0.0; swsteps = 0.0; sesteps = 0.0;
+- north = 0.0; south = 0.0; east = 0.0; west = 0.0;
+- nw = 0.0; ne = 0.0; sw = 0.0; se = 0.0;
+-
+- nnesteps = 0.0; enesteps = 0.0; esesteps = 0.0; ssesteps = 0.0;
+- sswsteps = 0.0; wswsteps = 0.0; wnwsteps = 0.0; nnwsteps = 0.0;
+- nne = 0.0; ene = 0.0; ese = 0.0; sse = 0.0;
+- ssw = 0.0; wsw = 0.0; wnw = 0.0; nnw = 0.0;
+-
+-/** NSEW **/
+- for ( ii = i - 1; ii >= 0; ii-- ){ /* North */
+- if ( ii <= 0 ) { north = 0; nsteps = 0; break;}
+- if ( *(image2+ii*samps+j) != 0 ){ north = *(image2+ii*samps+j); nsteps = i - ii; break;}
+- }
+-
+- for ( ii = i + 1; ii < lines; ii++ ){ /* South */
+- if ( ii >= lines-1 ){ south = 0; ssteps = 0; break;}
+- if ( *(image2+ii*samps+j) != 0 ){ south = *(image2+ii*samps+j); ssteps = ii - i; break;}
+- }
+-
+- for ( jj = j - 1; jj >= 0; jj-- ){ /* West */
+- if ( jj <= 0 ) { west = 0; wsteps = 0; break;}
+- if ( *(image2+i*samps+jj) != 0 ){ west = *(image2+i*samps+jj); wsteps = j - jj; break;}
+- }
+-
+- for ( jj = j + 1; jj < samps; jj++ ){ /* East */
+- if ( jj >= samps-1 ){ east = 0; esteps = 0; break;}
+- if ( *(image2+i*samps+jj) != 0 ){ east = *(image2+i*samps+jj); esteps = jj - j; break;}
+- }
+-
+-/** Diagonals **/
+- /* Southeast */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i + k; jj = j + k;
+- if (( ii == lines ) || ( jj == samps )){ se = 0; sesteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ se = *(image2+ii*samps+jj); sesteps = 1.4142 * k; break;}
+- }
+-
+- /* Northeast */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i - k; jj = j + k;
+- if (( ii == -1 ) || ( jj == samps )){ ne = 0; nesteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ ne = *(image2+ii*samps+jj); nesteps = 1.4142 * k; break;}
+- }
+-
+- /* Northwest */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i - k; jj = j - k;
+- if (( ii == -1 ) || ( jj == -1 )){ nw = 0; nwsteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ nw = *(image2+ii*samps+jj); nwsteps = 1.4142 * k; break;}
+- }
+-
+- /* Southwest */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i + k; jj = j - k;
+- if (( ii == lines ) || ( jj == -1 )){ sw = 0; swsteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ sw = *(image2+ii*samps+jj); swsteps = 1.4142 * k; break;}
+- }
+-
+-/** Other 8 **/
+- /* NNE */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i - (k*2); jj = j + k;
+- if (( ii <= -1 ) || ( jj >= samps )){ nne = 0; nnesteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ nne = *(image2+ii*samps+jj); nnesteps = 2.2361 * k; break;}
+- }
+-
+- /* ENE */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i - k; jj = j + (k*2);
+- if (( ii <= -1 ) || ( jj >= samps )){ ene = 0; enesteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ ene = *(image2+ii*samps+jj); enesteps = 2.2361 * k; break;}
+- }
+-
+- /* ESE */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i + k; jj = j + (k*2);
+- if (( ii >= lines ) || ( jj >= samps )){ ese = 0; esesteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ ese = *(image2+ii*samps+jj); esesteps = 2.2361 * k; break;}
+- }
+-
+- /* SSE */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i + (k*2); jj = j + k;
+- if (( ii >= lines ) || ( jj >= samps )){ sse = 0; ssesteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ sse = *(image2+ii*samps+jj); ssesteps = 2.2361 * k; break;}
+- }
+-
+- /* SSW */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i + (k*2); jj = j - k;
+- if (( ii >= lines ) || ( jj <= -1 )){ ssw = 0; sswsteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ ssw = *(image2+ii*samps+jj); sswsteps = 2.2361 * k; break;}
+- }
+-
+- /* WSW */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i + k; jj = j - (k*2);
+- if (( ii >= lines ) || ( jj <= -1 )){ wsw = 0; wswsteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ wsw = *(image2+ii*samps+jj); wswsteps = 2.2361 * k; break;}
+- }
+-
+- /* WNW */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i - k; jj = j - (k*2);
+- if (( ii <= -1 ) || ( jj <= -1 )){ wnw = 0; wnwsteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ wnw = *(image2+ii*samps+jj); wnwsteps = 2.2361 * k; break;}
+- }
+-
+- /* NNW */
+- for ( k = 1; k < infinit; k++ ){
+- ii = i - (k*2); jj = j - k;
+- if (( ii <= -1 ) || ( jj <= -1 )){ nnw = 0; nnwsteps = 0; break;}
+- if ( *(image2+ii*samps+jj) != 0 ){ nnw = *(image2+ii*samps+jj); nnwsteps = 2.2361 * k; break;}
+- }
+-
+- elev = 0; range = 0;
+-/*NSEW*/
+- if ( nsteps > 0.5 ){ elev += north / nsteps; range += 1.00 / nsteps;}
+- if ( ssteps > 0.5 ){ elev += south / ssteps; range += 1.00 / ssteps;}
+- if ( esteps > 0.5 ){ elev += east / esteps; range += 1.00 / esteps;}
+- if ( wsteps > 0.5 ){ elev += west / wsteps; range += 1.00 / wsteps;}
+-/*Diag*/
+- if ( nwsteps > 0.5 ){ elev += nw / nwsteps; range += 1.00 / nwsteps;}
+- if ( nesteps > 0.5 ){ elev += ne / nesteps; range += 1.00 / nesteps;}
+- if ( swsteps > 0.5 ){ elev += sw / swsteps; range += 1.00 / swsteps;}
+- if ( sesteps > 0.5 ){ elev += se / sesteps; range += 1.00 / sesteps;}
+-
+-/*Other 8*/
+- if ( nnesteps > 0.5 ){ elev += nne / nnesteps; range += 1.00 / nnesteps;}
+- if ( enesteps > 0.5 ){ elev += ene / enesteps; range += 1.00 / enesteps;}
+- if ( esesteps > 0.5 ){ elev += ese / esesteps; range += 1.00 / esesteps;}
+- if ( ssesteps > 0.5 ){ elev += sse / ssesteps; range += 1.00 / ssesteps;}
+- if ( sswsteps > 0.5 ){ elev += ssw / sswsteps; range += 1.00 / sswsteps;}
+- if ( wswsteps > 0.5 ){ elev += wsw / wswsteps; range += 1.00 / wswsteps;}
+- if ( wnwsteps > 0.5 ){ elev += wnw / wnwsteps; range += 1.00 / wnwsteps;}
+- if ( nnwsteps > 0.5 ){ elev += nnw / nnwsteps; range += 1.00 / nnwsteps;}
+-
+- //temp = ( elev / range ) + 0.5 ;
+- temp = ( elev / range );
+- //+ 0.5 ;
+- //if ( temp > 10000 ) temp = 10000;
+- //if ( temp < 0 ) temp = 0;
+-
+- #ifdef _DEBUG2_
+- //_printf_(temp << " " << elev << " " << range << " \n");
+- #endif
+-
+- *(image3+samps*i+j) = temp ;
+- }
+- }
+-
+- for ( i = 0; i < lines; i++ ){
+- for ( j = 0; j < samps; j++ ){
+- *(image2+samps*i+j)= *(image3+samps*i+j);
+- }
+- }
+-
+- for ( i = 0; i < lines; i++ ){
+- for ( j = 0; j < samps; j++ ){
+- if ( *(image2+samps*i+j) == 0 ) goto again2;
+- }
+- }
+-
+- if ( smooth == 0 ) goto there2;
+-
+-/************************ SMOOTH THE RESULT ***********************/
+-
+- image4 = xNew(lines*samps);
+- memcpy(image4,image3,lines*samps*sizeof(double));
+-
+- for ( i = 0; i < lines; i++ ) {
+- for ( j = 0; j < samps; j++ ) {
+- if ( *(image4+i*samps+j) != 0 ) { *(image3+i*samps+j) = *(image2+i*samps+j) ; continue; }
+-
+- for ( k = 1; k < infinit; k++ ) { /* Find the smallest box size with data */
+- for ( ii = i-k; ii <= i+k; ii++ ){
+- if ( ii < 0 ) continue;
+- if ( ii >= lines ) break;
+- for ( jj = j-k; jj <= j+k; jj++ ) {
+- if ( jj < 0 ) continue;
+- if ( jj >= samps ) continue;
+- if ( *(image4+ii*samps+jj) != 0 ) goto k_nowset;
+- }
+- }
+- }
+-
+- k_nowset:
+- k = k / 4; if ( k < 1 ) k = 1; /* Errrrr. Make it fourth size */
+- sum = 0;
+- for ( ii = i-k; ii <= i+k; ii++ ) {
+- if ( ii < 0 ) iii = -1 - ii; else iii = ii;
+- if ( ii >= lines ) iii = lines - (ii - lines + 1);
+- for ( jj = j-k; jj <= j+k; jj++ ) {
+- if ( jj < 0 ) jjj = -1 - jj; else jjj = jj;
+- if ( jj >= samps ) jjj = samps - (jj - samps + 1);
+- sum += *(image2+samps*iii+jjj) ;
+- }
+- }
+- k = (k*2)+1;
+- *(image3+samps*i+j) = ( sum / k / k ) ;//+ 0.5;
+- }
+-
+- }
+-
+-there2:
+-
+- /*Allocate output image: */
+- imageout=xNew(samps*lines);
+- memcpy(imageout,image3,lines*samps*sizeof(double));
+-
+- time(&t2);
+-
+- #ifdef _DEBUG2_
+- _printf_( "\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b" );
+- _printf_("Number of zeroes remaining: 0\n\n");
+- printf ( "\n");
+- #endif
+-
+- /*Assign output pointers: */
+- *pimageout=imageout;
+- return 1;
+-}
+Index: ../trunk-jpl/src/c/modules/modules.h
+===================================================================
+--- ../trunk-jpl/src/c/modules/modules.h (revision 17994)
++++ ../trunk-jpl/src/c/modules/modules.h (revision 17995)
+@@ -7,7 +7,6 @@
+
+ /*Modules: */
+ #include "./AllocateSystemMatricesx/AllocateSystemMatricesx.h"
+-#include "./AverageFilterx/AverageFilterx.h"
+ #include "./AverageOntoPartitionx/AverageOntoPartitionx.h"
+ #include "./Bamgx/Bamgx.h"
+ #include "./BamgConvertMeshx/BamgConvertMeshx.h"
+@@ -23,7 +22,6 @@
+ #include "./CreateJacobianMatrixx/CreateJacobianMatrixx.h"
+ #include "./DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.h"
+ #include "./ElementConnectivityx/ElementConnectivityx.h"
+-#include "./EdgeDetectionx/EdgeDetectionx.h"
+ #include "./GetSolutionFromInputsx/GetSolutionFromInputsx.h"
+ #include "./GetVectorFromInputsx/GetVectorFromInputsx.h"
+ #include "./GetVectorFromControlInputsx/GetVectorFromControlInputsx.h"
+@@ -32,7 +30,6 @@
+ #include "./SetActiveNodesLSMx/SetActiveNodesLSMx.h"
+ #include "./Gradjx/Gradjx.h"
+ #include "./GroundinglineMigrationx/GroundinglineMigrationx.h"
+-#include "./HoleFillerx/HoleFillerx.h"
+ #include "./InputControlUpdatex/InputControlUpdatex.h"
+ #include "./InputDepthAverageAtBasex/InputDepthAverageAtBasex.h"
+ #include "./InputDuplicatex/InputDuplicatex.h"
+Index: ../trunk-jpl/src/c/Makefile.am
+===================================================================
+--- ../trunk-jpl/src/c/Makefile.am (revision 17994)
++++ ../trunk-jpl/src/c/Makefile.am (revision 17995)
+@@ -825,12 +825,6 @@
+ ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h\
+ ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.cpp\
+ ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.h\
+- ./modules/HoleFillerx/HoleFillerx.cpp\
+- ./modules/HoleFillerx/HoleFillerx.h\
+- ./modules/EdgeDetectionx/EdgeDetectionx.cpp\
+- ./modules/EdgeDetectionx/EdgeDetectionx.h\
+- ./modules/AverageFilterx/AverageFilterx.cpp\
+- ./modules/AverageFilterx/AverageFilterx.h\
+ ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.cpp\
+ ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.h\
+ ./modules/ContourToMeshx/ContourToMeshx.cpp\
+Index: ../trunk-jpl/src/wrappers/HoleFiller/HoleFiller.cpp
+===================================================================
+--- ../trunk-jpl/src/wrappers/HoleFiller/HoleFiller.cpp (revision 17994)
++++ ../trunk-jpl/src/wrappers/HoleFiller/HoleFiller.cpp (revision 17995)
+@@ -1,64 +0,0 @@
+-/*!\file: HoleFiller.cpp
+- * \brief fill holes in matlab velocity array
+- this matlab module is an adaptation of a routine written by Robber
+- Crippen. The original routine was designed for the SRTM mission at JPL,
+- and can be found in the current directory, under the name
+- HoleFillerCrippen. It fills void holes in an image, using an interpolation
+- algorithm, and optionnally a smoothing algorithm.
+- This matlab module extends the Crippen routine to be used in Matlab,
+- using double arrays found in the workspace, and loaded directly into memory.
+-*/
+-
+-#include "./HoleFiller.h"
+-
+-void HoleFillerUsage(void){/*{{{*/
+- _printf_(" HoleFiller usage:\n");
+- _printf_(" [image_out]=HoleFiller(image_in,smooth);\n");
+- _printf_(" where:\n");
+- _printf_(" image_in in double format\n");
+- _printf_(" smooth: 1 to smooth with a box filer, 0 to leave data raw\n");
+- _printf_(" image_out in double format\n");
+- _printf_("\n");
+-}/*}}}*/
+-WRAPPER(HoleFiller){
+-
+- /* required input: */
+- double* imagein=NULL;
+- int imagein_rows,imagein_cols;
+- int smooth_flag;
+- int smooth;
+-
+- /* output: */
+- double* imageout=NULL;
+- int imageout_rows,imageout_cols;
+-
+- /*Boot module: */
+- MODULEBOOT();
+-
+- /*checks on arguments on the matlab side: */
+- CheckNumMatlabArguments(nlhs,NLHS,nrhs,NRHS,__FUNCT__,&HoleFillerUsage);
+-
+- /*Fetch data: */
+- FetchData(&imagein,&imagein_rows,&imagein_cols,IMAGEIN);
+- FetchData(&smooth_flag,SMOOTH);
+-
+- /*Get smooth flag setup: */
+- if (smooth_flag==0)
+- smooth=1;
+- else
+- smooth=0;
+-
+- /*Run core hole filler routine: */
+- HoleFillerx( &imageout,imagein,imagein_rows,imagein_cols,smooth);
+-
+- /* output: */
+- WriteData(IMAGEOUT,imageout,imagein_rows,imagein_cols);
+-
+- /*Clean up*/
+- xDelete(imagein);
+- xDelete(imageout);
+- xDelete(imagein);
+-
+- /*end module: */
+- MODULEEND();
+-}
+Index: ../trunk-jpl/src/wrappers/HoleFiller/HoleFiller.h
+===================================================================
+--- ../trunk-jpl/src/wrappers/HoleFiller/HoleFiller.h (revision 17994)
++++ ../trunk-jpl/src/wrappers/HoleFiller/HoleFiller.h (revision 17995)
+@@ -1,49 +0,0 @@
+-/*
+- HoleFiller.h
+-*/
+-
+-#ifndef _HOLEFILLER_H
+-#define _HOLEFILLER_H
+-
+-#ifdef HAVE_CONFIG_H
+- #include
+-#else
+- #error "Cannot compile with HAVE_CONFIG_H symbol! run configure first!"
+-#endif
+-
+-/*For python modules: needs to come before header files inclusion*/
+-#ifdef _HAVE_PYTHON_
+-#define PY_ARRAY_UNIQUE_SYMBOL PythonIOSymbol
+-#endif
+-
+-#include "../bindings.h"
+-#include "../../c/main/globals.h"
+-#include "../../c/modules/modules.h"
+-#include "../../c/shared/shared.h"
+-
+-#undef __FUNCT__
+-#define __FUNCT__ "HoleFiller"
+-
+-#ifdef _HAVE_MATLAB_MODULES_
+-/* serial input macros: */
+-#define IMAGEIN prhs[0]
+-#define SMOOTH prhs[1]
+-/* serial output macros: */
+-#define IMAGEOUT (mxArray**)&plhs[0]
+-#endif
+-
+-#ifdef _HAVE_PYTHON_MODULES_
+-/* serial input macros: */
+-#define IMAGEIN PyTuple_GetItem(args,0)
+-#define SMOOTH PyTuple_GetItem(args,1)
+-/* serial output macros: */
+-#define IMAGEOUT output,0
+-#endif
+-
+-/* serial arg counts: */
+-#undef NLHS
+-#define NLHS 1
+-#undef NRHS
+-#define NRHS 2
+-
+-#endif /* _HOLEFILLER_H */
+Index: ../trunk-jpl/src/wrappers/EdgeDetection/EdgeDetection.cpp
+===================================================================
+--- ../trunk-jpl/src/wrappers/EdgeDetection/EdgeDetection.cpp (revision 17994)
++++ ../trunk-jpl/src/wrappers/EdgeDetection/EdgeDetection.cpp (revision 17995)
+@@ -1,53 +0,0 @@
+-/*!\file EdgeDetection.c
+- * \brief: edge detection for a boolean image
+-*/
+-
+-#include "./EdgeDetection.h"
+-
+-void EdgeDetectionUsage(void){/*{{{*/
+- _printf0_("EDGEDETECTION usage- detect edges of a boolean image\n");
+- _printf0_("\n");
+- _printf0_(" Usage:\n");
+- _printf0_(" contours=EdgeDetection(image);\n");
+- _printf0_("\n");
+- _printf0_(" image: boolean matrix\n");
+- _printf0_("\n");
+- _printf0_(" Example:\n");
+- _printf0_(" load('velocities.mat');\n");
+- _printf0_(" md.inversion.vx_obs=EdgeDetection(x_n,y_m,vx,md.mesh.x,md.mesh.y,0);\n");
+- _printf0_("\n");
+-}/*}}}*/
+-WRAPPER(EdgeDetection){
+-
+- /*input: */
+- bool *image = NULL;
+- int M,N;
+-
+- /* output: */
+- Contours* contours=NULL;
+-
+- /*Boot module: */
+- MODULEBOOT();
+-
+- /*checks on arguments: */
+- CHECKARGUMENTS(NLHS,NRHS,&EdgeDetectionUsage);
+-
+- /*Input datasets: */
+- FetchData(&image,&M,&N,IMAGE);
+-
+- /*Initialize output: */
+- contours=new Contours();
+-
+- /* Run core computations: */
+- EdgeDetectionx(contours,image,M,N);
+-
+- /*Write data: */
+- WriteData(CONTOURS,contours);
+-
+- /*Clean up*/
+- xDelete(image);
+- delete contours;
+-
+- /*end module: */
+- MODULEEND();
+-}
+Index: ../trunk-jpl/src/wrappers/EdgeDetection/EdgeDetection.h
+===================================================================
+--- ../trunk-jpl/src/wrappers/EdgeDetection/EdgeDetection.h (revision 17994)
++++ ../trunk-jpl/src/wrappers/EdgeDetection/EdgeDetection.h (revision 17995)
+@@ -1,51 +0,0 @@
+-/*!\file EdgeDetection.h
+- * \brief: prototype for EdgeDetection module
+- */
+-
+-#ifndef _EDGEDETECTION_H_
+-#define _EDGEDETECTION_H_
+-
+-#ifdef HAVE_CONFIG_H
+- #include
+-#else
+- #error "Cannot compile with HAVE_CONFIG_H symbol! run configure first!"
+-#endif
+-
+-/*For python modules: needs to come before header files inclusion*/
+-#ifdef _HAVE_PYTHON_
+-#define PY_ARRAY_UNIQUE_SYMBOL PythonIOSymbol
+-#endif
+-
+-/*Header files: */
+-#include "../bindings.h"
+-#include "../../c/main/globals.h"
+-#include "../../c/toolkits/toolkits.h"
+-#include "../../c/modules/modules.h"
+-#include "../../c/shared/shared.h"
+-#include "../../c/shared/io/io.h"
+-#include "../../c/shared/Enum/Enum.h"
+-
+-#undef __FUNCT__
+-#define __FUNCT__ "EdgeDetection"
+-
+-#ifdef _HAVE_MATLAB_MODULES_
+-/* serial input macros: */
+-#define IMAGE prhs[0]
+-/* serial output macros: */
+-#define CONTOURS (mxArray**)&plhs[0]
+-#endif
+-
+-#ifdef _HAVE_PYTHON_MODULES_
+-/* serial input macros: */
+-#define IMAGE PyTuple_GetItem(args,0)
+-/* serial output macros: */
+-#define CONTOURS output,0
+-#endif
+-
+-/* serial arg counts: */
+-#undef NLHS
+-#define NLHS 1
+-#undef NRHS
+-#define NRHS 1
+-
+-#endif /* _EDGEDETECTION_H_ */
+Index: ../trunk-jpl/src/wrappers/AverageFilter/AverageFilter.cpp
+===================================================================
+--- ../trunk-jpl/src/wrappers/AverageFilter/AverageFilter.cpp (revision 17994)
++++ ../trunk-jpl/src/wrappers/AverageFilter/AverageFilter.cpp (revision 17995)
+@@ -1,58 +0,0 @@
+-/*!\file: AverageFilter.cpp
+- * \brief fill holes in matlab velocity array
+- this matlab module is an adaptation of a routine written by Robber
+- Crippen. The original routine was designed for the SRTM mission at JPL,
+- and can be found in the current directory, under the name
+- AverageFilterCrippen. It fills void holes in an image, using an interpolation
+- algorithm, and optionnally a smoothing algorithm.
+- This matlab module extends the Crippen routine to be used in Matlab,
+- using double arrays found in the workspace, and loaded directly into memory.
+-*/
+-
+-#include "./AverageFilter.h"
+-
+-void AverageFilterUsage(void){/*{{{*/
+- _printf_(" AverageFilter usage:\n");
+- _printf_(" [image_out]=AverageFilter(image_in,pixels)\n");
+- _printf_(" where:\n");
+- _printf_(" image_in in double format\n");
+- _printf_(" pixels: characteristic size of smoothing\n");
+- _printf_(" image_out in double format\n");
+- _printf_("\n");
+-}/*}}}*/
+-WRAPPER(AverageFilter){
+-
+- int i,j;
+-
+- /* required input: */
+- double* imagein=NULL;
+- int imagein_rows,imagein_cols;
+- int smooth;
+-
+- /* output: */
+- double* imageout=NULL;
+- int imageout_rows,imageout_cols;
+-
+- /*Boot module: */
+- MODULEBOOT();
+-
+- /*checks on arguments on the matlab side: */
+- CheckNumMatlabArguments(nlhs,NLHS,nrhs,NRHS,__FUNCT__,&AverageFilterUsage);
+-
+- /*Fetch data: */
+- FetchData(&imagein,&imagein_rows,&imagein_cols,IMAGEIN);
+- FetchData(&smooth,SMOOTH);
+-
+- /*Run core hole filler routine: */
+- AverageFilterx( &imageout,imagein,imagein_rows,imagein_cols,smooth);
+-
+- /* output: */
+- WriteData(IMAGEOUT,imageout,imagein_rows,imagein_cols);
+-
+- /*free ressources: */
+- xDelete(imagein);
+- xDelete(imageout);
+-
+- /*end module: */
+- MODULEEND();
+-}
+Index: ../trunk-jpl/src/wrappers/AverageFilter/AverageFilter.h
+===================================================================
+--- ../trunk-jpl/src/wrappers/AverageFilter/AverageFilter.h (revision 17994)
++++ ../trunk-jpl/src/wrappers/AverageFilter/AverageFilter.h (revision 17995)
+@@ -1,49 +0,0 @@
+-/*
+- AverageFilter.h
+-*/
+-
+-#ifndef _AVERAGEFILTER_H
+-#define _AVERAGEFILTER_H
+-
+-#ifdef HAVE_CONFIG_H
+- #include
+-#else
+- #error "Cannot compile with HAVE_CONFIG_H symbol! run configure first!"
+-#endif
+-
+-/*For python modules: needs to come before header files inclusion*/
+-#ifdef _HAVE_PYTHON_
+-#define PY_ARRAY_UNIQUE_SYMBOL PythonIOSymbol
+-#endif
+-
+-#include "../bindings.h"
+-#include "../../c/main/globals.h"
+-#include "../../c/modules/modules.h"
+-#include "../../c/shared/shared.h"
+-
+-#undef __FUNCT__
+-#define __FUNCT__ "AverageFilter"
+-
+-#ifdef _HAVE_MATLAB_MODULES_
+-/* serial input macros: */
+-#define IMAGEIN prhs[0]
+-#define SMOOTH prhs[1]
+-/* serial output macros: */
+-#define IMAGEOUT (mxArray**)&plhs[0]
+-#endif
+-
+-#ifdef _HAVE_PYTHON_MODULES_
+-/* serial input macros: */
+-#define IMAGEIN PyTuple_GetItem(args,0)
+-#define SMOOTH PyTuple_GetItem(args,1)
+-/* serial output macros: */
+-#define IMAGEOUT output,0
+-#endif
+-
+-/* serial arg counts: */
+-#undef NLHS
+-#define NLHS 1
+-#undef NRHS
+-#define NRHS 2
+-
+-#endif /* _AVERAGEFILTER_H */
+Index: ../trunk-jpl/src/wrappers/InternalFront/InternalFront.cpp
+===================================================================
+--- ../trunk-jpl/src/wrappers/InternalFront/InternalFront.cpp (revision 17994)
++++ ../trunk-jpl/src/wrappers/InternalFront/InternalFront.cpp (revision 17995)
+@@ -1,92 +0,0 @@
+-/*\file InternalFront.c
+- *\brief: build pressureload
+- */
+-
+-#include "./InternalFront.h"
+-
+-void InternalFrontUsage(void) {/*{{{*/
+- _printf0_("\n");
+- _printf0_(" usage: icefront = " << __FUNCT__ << "(md);\n");
+- _printf0_("\n");
+-}/*}}}*/
+-WRAPPER(InternalFront){
+-
+- bool* elementonwater=NULL;
+- int* elements=NULL;
+- int* elementconnectivity=NULL;
+- int* front=NULL;
+- double* front2=NULL;
+- bool found;
+- int numberofelements,numberofsegments;
+- int i,j,ii,jj,id;
+- int dummy;
+-
+- /*Boot module: */
+- MODULEBOOT();
+-
+- /*checks on arguments: */
+- CHECKARGUMENTS(NLHS,NRHS,&InternalFrontUsage);
+-
+- /*Fetch inputs: */
+- FetchData(&elements,&numberofelements,&dummy,ELEMENTS);
+- FetchData(&elementonwater,&dummy,&dummy,ELEMENTONWATER);
+- FetchData(&elementconnectivity,&dummy,&dummy,ELEMENTCONNECTIVITY);
+-
+- /*Allocate and initialize all variables*/
+- numberofsegments=0;
+- front=xNew(3*numberofelements*4);
+-
+- /*Loop over all elements on water*/
+- for(i=0;i(4*numberofsegments);
+- for(i=0;i<4*numberofsegments;i++) front2[i]=(double)front[i];
+- }
+- xDelete(front);
+-
+- /*write output datasets: */
+- WriteData(FRONT,front2,numberofsegments,4);
+-
+- /*end module: */
+- MODULEEND();
+-}
+Index: ../trunk-jpl/src/wrappers/InternalFront/InternalFront.h
+===================================================================
+--- ../trunk-jpl/src/wrappers/InternalFront/InternalFront.h (revision 17994)
++++ ../trunk-jpl/src/wrappers/InternalFront/InternalFront.h (revision 17995)
+@@ -1,51 +0,0 @@
+-/*
+- InternalFront.h
+-*/
+-
+-#ifndef _INTERNALFRONT_H
+-#define _INTERNALFRONT_H
+-
+-#ifdef HAVE_CONFIG_H
+- #include
+-#else
+- #error "Cannot compile with HAVE_CONFIG_H symbol! run configure first!"
+-#endif
+-
+-/*For python modules: needs to come before header files inclusion*/
+-#ifdef _HAVE_PYTHON_
+-#define PY_ARRAY_UNIQUE_SYMBOL PythonIOSymbol
+-#endif
+-
+-#include "../bindings.h"
+-#include "../../c/main/globals.h"
+-#include "../../c/shared/shared.h"
+-#include "../../c/shared/io/io.h"
+-
+-#undef __FUNCT__
+-#define __FUNCT__ "InternalFront"
+-
+-#ifdef _HAVE_MATLAB_MODULES_
+-/* serial input macros: */
+-#define ELEMENTS prhs[0]
+-#define ELEMENTONWATER prhs[1]
+-#define ELEMENTCONNECTIVITY prhs[2]
+-/* serial output macros: */
+-#define FRONT (mxArray**)&plhs[0]
+-#endif
+-
+-#ifdef _HAVE_PYTHON_MODULES_
+-/* serial input macros: */
+-#define ELEMENTS PyTuple_GetItem(args,0)
+-#define ELEMENTONWATER PyTuple_GetItem(args,1)
+-#define ELEMENTCONNECTIVITY PyTuple_GetItem(args,2)
+-/* serial output macros: */
+-#define FRONT output,0]
+-#endif
+-
+-/* serial arg counts: */
+-#undef NLHS
+-#define NLHS 1
+-#undef NRHS
+-#define NRHS 3
+-
+-#endif
+Index: ../trunk-jpl/src/wrappers/matlab/Makefile.am
+===================================================================
+--- ../trunk-jpl/src/wrappers/matlab/Makefile.am (revision 17994)
++++ ../trunk-jpl/src/wrappers/matlab/Makefile.am (revision 17995)
+@@ -46,18 +46,14 @@
+ #}}}
+ #Wrappers {{{
+ if WRAPPERS
+-lib_LTLIBRARIES += AverageFilter.la\
+- BamgMesher.la\
++lib_LTLIBRARIES += BamgMesher.la\
+ BamgConvertMesh.la\
+ BamgTriangulate.la\
+ ContourToMesh.la\
+ ContourToNodes.la\
+- EdgeDetection.la\
+ ElementConnectivity.la\
+ EnumToString.la\
+ ExpSimplify.la\
+- HoleFiller.la\
+- InternalFront.la\
+ InterpFromGridToMesh.la\
+ InterpFromMeshToMesh2d.la\
+ InterpFromMeshToMesh3d.la\
+@@ -132,10 +128,6 @@
+ libISSMApi_la_LIBADD = $(MPILIB) $(PETSCLIB) $(GSLLIB) $(MATHLIB) $(MEXLIB)
+ libISSMApi_la_LDFLAGS = -module -export-dynamic
+
+-AverageFilter_la_SOURCES = ../AverageFilter/AverageFilter.cpp\
+- ../AverageFilter/AverageFilter.h
+-AverageFilter_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(GSLLIB)
+-
+ BamgMesher_la_SOURCES = ../BamgMesher/BamgMesher.cpp\
+ ../BamgMesher/BamgMesher.h
+ BamgMesher_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(GSLLIB)
+@@ -172,14 +164,6 @@
+ ../StringToEnum/StringToEnum.h
+ StringToEnum_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(GSLLIB)
+
+-HoleFiller_la_SOURCES = ../HoleFiller/HoleFiller.cpp\
+- ../HoleFiller/HoleFiller.h
+-HoleFiller_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(GSLLIB)
+-
+-InternalFront_la_SOURCES = ../InternalFront/InternalFront.cpp\
+- ../InternalFront/InternalFront.h
+-InternalFront_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(GSLLIB)
+-
+ InterpFromGridToMesh_la_SOURCES = ../InterpFromGridToMesh/InterpFromGridToMesh.cpp\
+ ../InterpFromGridToMesh/InterpFromGridToMesh.h
+ InterpFromGridToMesh_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(MULTITHREADINGLIB) $(GSLLIB)
+@@ -224,10 +208,6 @@
+ ../Ll2xy/Ll2xy.h
+ Ll2xy_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(GSLLIB)
+
+-EdgeDetection_la_SOURCES = ../EdgeDetection/EdgeDetection.cpp\
+- ../EdgeDetection/EdgeDetection.h
+-EdgeDetection_la_LIBADD= ${deps} $(MPILIB) $(PETSCLIB) $(GSLLIB)
+-
+ ExpSimplify_la_SOURCES = ../ExpSimplify/ExpSimplify.cpp\
+ ../ExpSimplify/ExpSimplify.h
+ ExpSimplify_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(GSLLIB)
Index: /issm/oecreview/Archive/17984-18295/ISSM-17999-18000.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-17999-18000.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-17999-18000.diff (revision 18296)
@@ -0,0 +1,587 @@
+Index: ../trunk-jpl/src/m/classes/SMBcomponents.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/SMBcomponents.py (revision 0)
++++ ../trunk-jpl/src/m/classes/SMBcomponents.py (revision 18000)
+@@ -0,0 +1,80 @@
++from fielddisplay import fielddisplay
++from EnumDefinitions import *
++from checkfield import *
++from project3d import *
++from WriteData import *
++
++class SMBcomponents(object):
++ """
++ SMBcomponents Class definition
++
++ Usage:
++ SMBcomponents=SMBcomponents();
++ """
++
++ def __init__(self): # {{{
++ self.accumulation = float('NaN')
++ self.runoff = float('NaN')
++ self.evaporation = float('NaN')
++ #}}}
++ def __repr__(self): # {{{
++ string=" surface forcings parameters (SMB=accumulation-runoff-evaporation) :"
++ string="%s\n%s"%(string,fielddisplay(self,'accumulation','accumulated snow [m/yr ice eq]'))
++ string="%s\n%s"%(string,fielddisplay(self,'runoff','amount of ice melt lost from the ice column [m/yr ice eq]'))
++ string="%s\n%s"%(string,fielddisplay(self,'evaporation','mount of ice lost to evaporative processes [m/yr ice eq]'))
++ return string
++ #}}}
++ def extrude(self,md): # {{{
++
++ self.mass_balance=project3d(md,'vector',self.accumulation,'type','node');
++ self.mass_balance=project3d(md,'vector',self.runoff,'type','node');
++ self.mass_balance=project3d(md,'vector',self.evaporation,'type','node');
++ return self
++ #}}}
++ def initialize(self,md): # {{{
++
++ if numpy.all(numpy.isnan(self.accumulation)):
++ self.accumulation=numpy.zeros((md.mesh.numberofvertices,1))
++ print " no SMB.accumulation specified: values set as zero"
++
++ if numpy.all(numpy.isnan(self.runoff)):
++ self.runoff=numpy.zeros((md.mesh.numberofvertices,1))
++ print " no SMB.runoff specified: values set as zero"
++
++ if numpy.all(numpy.isnan(self.evaporation)):
++ self.evaporation=numpy.zeros((md.mesh.numberofvertices,1))
++ print " no SMB.evaporation specified: values set as zero"
++
++ return self
++ #}}}
++ def checkconsistency(self,md,solution,analyses): # {{{
++
++ if MasstransportAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.accumulation','forcing',1,'NaN',1)
++
++ if BalancethicknessAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.accumulation','size',[md.mesh.numberofvertices],'NaN',1)
++
++ if MasstransportAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.runoff','forcing',1,'NaN',1)
++
++ if BalancethicknessAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.runoff','size',[md.mesh.numberofvertices],'NaN',1)
++
++ if MasstransportAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.evaporation','forcing',1,'NaN',1)
++
++ if BalancethicknessAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.evaporation','size',[md.mesh.numberofvertices],'NaN',1)
++
++ return md
++ # }}}
++ def marshall(self,md,fid): # {{{
++
++ yts=365.0*24.0*3600.0
++
++ WriteData(fid,'enum',SurfaceforcingsEnum(),'data',SMBEnum(),'format','Integer');
++ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','accumulation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
++ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','runoff','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
++ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','evaporation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
++ # }}}
+Index: ../trunk-jpl/src/m/classes/timestepping.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/timestepping.py (revision 17999)
++++ ../trunk-jpl/src/m/classes/timestepping.py (revision 18000)
+@@ -17,6 +17,7 @@
+ self.time_step = 0.
+ self.time_adapt = 0
+ self.cfl_coefficient = 0.
++ self.interp_forcings = 1
+
+ #set defaults
+ self.setdefaultparameters()
+@@ -29,6 +30,7 @@
+ string="%s\n%s"%(string,fielddisplay(self,"time_step","length of time steps [yr]"))
+ string="%s\n%s"%(string,fielddisplay(self,"time_adapt","use cfl condition to define time step ? (0 or 1) "))
+ string="%s\n%s"%(string,fielddisplay(self,"cfl_coefficient","coefficient applied to cfl condition"))
++ string="%s\n%s"%(string,fielddisplay(self,"interp_forcings","interpolate in time between requested forcing values ? (0 or 1)"))
+ return string
+ #}}}
+ def setdefaultparameters(self): # {{{
+@@ -42,6 +44,9 @@
+ #time adaptation?
+ self.time_adapt=0
+ self.cfl_coefficient=0.5
++
++ #should we interpolate forcings between timesteps?
++ self.interp_forcings=1
+
+ return self
+ #}}}
+@@ -54,6 +59,7 @@
+ md = checkfield(md,'fieldname','timestepping.cfl_coefficient','numel',[1],'>',0,'<=',1)
+ if self.final_time-self.start_time<0:
+ md.checkmessage("timestepping.final_time should be larger than timestepping.start_time")
++ md = checkfield(md,'fieldname','timestepping.interp_forcings','numel',[1],'values',[0,1])
+
+ return md
+ # }}}
+@@ -66,4 +72,5 @@
+ WriteData(fid,'object',self,'fieldname','time_step','format','Double','scale',yts)
+ WriteData(fid,'object',self,'fieldname','time_adapt','format','Boolean')
+ WriteData(fid,'object',self,'fieldname','cfl_coefficient','format','Double')
++ WriteData(fid,'object',self,'fieldname','interp_forcings','format','Boolean')
+ # }}}
+Index: ../trunk-jpl/src/m/classes/SMBmeltcomponents.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/SMBmeltcomponents.py (revision 0)
++++ ../trunk-jpl/src/m/classes/SMBmeltcomponents.py (revision 18000)
+@@ -0,0 +1,93 @@
++from fielddisplay import fielddisplay
++from EnumDefinitions import *
++from checkfield import *
++from project3d import *
++from WriteData import *
++
++class SMBmeltcomponents(object):
++ """
++ SMBmeltcomponents Class definition
++
++ Usage:
++ SMBmeltcomponents=SMBmeltcomponents();
++ """
++
++ def __init__(self): # {{{
++ self.accumulation = float('NaN')
++ self.runoff = float('NaN')
++ self.evaporation = float('NaN')
++ #}}}
++ def __repr__(self): # {{{
++ string=" surface forcings parameters with melt (SMB=accumulation-evaporation-melt+refreeze) :"
++ string="%s\n%s"%(string,fielddisplay(self,'accumulation','accumulated snow [m/yr ice eq]'))
++ string="%s\n%s"%(string,fielddisplay(self,'evaporation','mount of ice lost to evaporative processes [m/yr ice eq]'))
++ string="%s\n%s"%(string,fielddisplay(self,'melt','amount of ice melt in the ice column [m/yr ice eq]'))
++ string="%s\n%s"%(string,fielddisplay(self,'refreeze','amount of ice melt refrozen in the ice column [m/yr ice eq]'))
++ return string
++ #}}}
++ def extrude(self,md): # {{{
++
++ self.mass_balance=project3d(md,'vector',self.accumulation,'type','node');
++ self.mass_balance=project3d(md,'vector',self.evaporation,'type','node');
++ self.mass_balance=project3d(md,'vector',self.melt,'type','node');
++ self.mass_balance=project3d(md,'vector',self.refreeze,'type','node');
++ return self
++ #}}}
++ def initialize(self,md): # {{{
++
++ if numpy.all(numpy.isnan(self.accumulation)):
++ self.accumulation=numpy.zeros((md.mesh.numberofvertices,1))
++ print " no SMB.accumulation specified: values set as zero"
++
++ if numpy.all(numpy.isnan(self.evaporation)):
++ self.evaporation=numpy.zeros((md.mesh.numberofvertices,1))
++ print " no SMB.evaporation specified: values set as zero"
++
++ if numpy.all(numpy.isnan(self.melt)):
++ self.melt=numpy.zeros((md.mesh.numberofvertices,1))
++ print " no SMB.melt specified: values set as zero"
++
++ if numpy.all(numpy.isnan(self.refreeze)):
++ self.refreeze=numpy.zeros((md.mesh.numberofvertices,1))
++ print " no SMB.refreeze specified: values set as zero"
++
++ return self
++ #}}}
++ def checkconsistency(self,md,solution,analyses): # {{{
++
++ if MasstransportAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.accumulation','forcing',1,'NaN',1)
++
++ if BalancethicknessAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.accumulation','size',[md.mesh.numberofvertices],'NaN',1)
++
++ if MasstransportAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.melt','forcing',1,'NaN',1)
++
++ if BalancethicknessAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.melt','size',[md.mesh.numberofvertices],'NaN',1)
++
++ if MasstransportAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.refreeze','forcing',1,'NaN',1)
++
++ if BalancethicknessAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.refreeze','size',[md.mesh.numberofvertices],'NaN',1)
++
++ if MasstransportAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.evaporation','forcing',1,'NaN',1)
++
++ if BalancethicknessAnalysisEnum() in analyses:
++ md = checkfield(md,'fieldname','surfaceforcings.evaporation','size',[md.mesh.numberofvertices],'NaN',1)
++
++ return md
++ # }}}
++ def marshall(self,md,fid): # {{{
++
++ yts=365.0*24.0*3600.0
++
++ WriteData(fid,'enum',SurfaceforcingsEnum(),'data',SMBEnum(),'format','Integer');
++ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','accumulation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
++ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','evaporation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
++ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','melt','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
++ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','refreeze','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
++ # }}}
+Index: ../trunk-jpl/src/m/classes/SMBmeltcomponents.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/SMBmeltcomponents.m (revision 0)
++++ ../trunk-jpl/src/m/classes/SMBmeltcomponents.m (revision 18000)
+@@ -0,0 +1,94 @@
++%SMBmeltcomponents Class definition
++%
++% Usage:
++% SMBmeltcomponents=SMBmeltcomponents();
++
++classdef SMBmeltcomponents
++ properties (SetAccess=public)
++ accumulation = NaN;
++ evaporation = NaN;
++ melt = NaN;
++ refreeze = NaN;
++ end
++ methods
++ function obj = SMBmeltcomponents(varargin) % {{{
++ switch nargin
++ case 0
++ otherwise
++ error('constructor not supported');
++ end
++ end % }}}
++ function self = extrude(self,md) % {{{
++
++ self.accumulation=project3d(md,'vector',self.accumulation,'type','node');
++ self.evaporation=project3d(md,'vector',self.evaporation,'type','node');
++ self.melt=project3d(md,'vector',self.melt,'type','node');
++ self.refreeze=project3d(md,'vector',self.refreeze,'type','node');
++
++ end % }}}
++ function self = initialize(self,md) % {{{
++
++ if isnan(self.accumulation)
++ self.accumulation=zeros(md.mesh.numberofvertices,1);
++ disp(' no surfaceforcings.accumulation specified: values set as zero');
++ end
++ if isnan(self.evaporation)
++ self.evaporation=zeros(md.mesh.numberofvertices,1);
++ disp(' no surfaceforcings.evaporation specified: values set as zero');
++ end
++ if isnan(self.refreeze)
++ self.refreeze=zeros(md.mesh.numberofvertices,1);
++ disp(' no surfaceforcings.refreeze specified: values set as zero');
++ end
++ if isnan(self.melt)
++ self.melt=zeros(md.mesh.numberofvertices,1);
++ disp(' no surfaceforcings.melt specified: values set as zero');
++ end
++
++ end % }}}
++ function md = checkconsistency(obj,md,solution,analyses) % {{{
++
++ if ismember(MasstransportAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.accumulation','forcing',1,'NaN',1);
++ end
++ if ismember(BalancethicknessAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.accumulation','size',[md.mesh.numberofvertices 1],'NaN',1);
++ end
++ if ismember(MasstransportAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.evaporation','forcing',1,'NaN',1);
++ end
++ if ismember(BalancethicknessAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.evaporation','size',[md.mesh.numberofvertices 1],'NaN',1);
++ end
++ if ismember(MasstransportAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.refreeze','forcing',1,'NaN',1);
++ end
++ if ismember(BalancethicknessAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.refreeze','size',[md.mesh.numberofvertices 1],'NaN',1);
++ end
++ if ismember(MasstransportAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.melt','forcing',1,'NaN',1);
++ end
++ if ismember(BalancethicknessAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.melt','size',[md.mesh.numberofvertices 1],'NaN',1);
++ end
++ end % }}}
++ function disp(obj) % {{{
++ disp(sprintf(' surface forcings parameters with melt (SMB=accumulation-evaporation-melt+refreeze) :'));
++ fielddisplay(obj,'accumulation','accumulated snow [m/yr ice eq]');
++ fielddisplay(obj,'evaporation','amount of ice lost to evaporative processes [m/yr ice eq]');
++ fielddisplay(obj,'melt','amount of ice melt in ice column [m/yr ice eq]');
++ fielddisplay(obj,'refreeze','amount of ice melt refrozen in ice column [m/yr ice eq]');
++ end % }}}
++ function marshall(obj,md,fid) % {{{
++
++ yts=365.0*24.0*3600.0;
++
++ WriteData(fid,'enum',SurfaceforcingsEnum(),'data',SMBmeltcomponentsEnum(),'format','Integer');
++ WriteData(fid,'object',obj,'class','surfaceforcings','fieldname','accumulation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1);
++ WriteData(fid,'object',obj,'class','surfaceforcings','fieldname','evaporation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1);
++ WriteData(fid,'object',obj,'class','surfaceforcings','fieldname','melt','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1);
++ WriteData(fid,'object',obj,'class','surfaceforcings','fieldname','refreeze','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1);
++ end % }}}
++ end
++end
+Index: ../trunk-jpl/src/m/classes/timestepping.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/timestepping.m (revision 17999)
++++ ../trunk-jpl/src/m/classes/timestepping.m (revision 18000)
+@@ -10,6 +10,7 @@
+ time_step = 0.;
+ time_adapt = 0;
+ cfl_coefficient = 0.;
++ interp_forcings = 1;
+ end
+ methods
+ function createxml(obj,fid) % {{{
+@@ -45,6 +46,9 @@
+ %time adaptation?
+ obj.time_adapt=0;
+ obj.cfl_coefficient=0.5;
++
++ %should we interpolate forcings between timesteps?
++ obj.interp_forcings=1;
+ end % }}}
+ function md = checkconsistency(obj,md,solution,analyses) % {{{
+
+@@ -53,6 +57,7 @@
+ md = checkfield(md,'fieldname','timestepping.time_step','numel',[1],'>=',0,'NaN',1);
+ md = checkfield(md,'fieldname','timestepping.time_adapt','numel',[1],'values',[0 1]);
+ md = checkfield(md,'fieldname','timestepping.cfl_coefficient','numel',[1],'>',0,'<=',1);
++ md = checkfield(md,'fieldname','timestepping.interp_forcings','numel',[1],'values',[0 1]);
+ if obj.final_time-obj.start_time<0,
+ md = checkmessage(md,'timestepping.final_time should be larger than timestepping.start_time');
+ end
+@@ -65,6 +70,7 @@
+ fielddisplay(obj,'time_step','length of time steps [yr]');
+ fielddisplay(obj,'time_adapt','use cfl condition to define time step ? (0 or 1) ');
+ fielddisplay(obj,'cfl_coefficient','coefficient applied to cfl condition');
++ fielddisplay(obj,'interp_forcings','interpolate in time between requested forcing values ? (0 or 1)');
+
+ end % }}}
+ function marshall(obj,md,fid) % {{{
+@@ -76,6 +82,7 @@
+ WriteData(fid,'object',obj,'fieldname','time_step','format','Double','scale',yts);
+ WriteData(fid,'object',obj,'fieldname','time_adapt','format','Boolean');
+ WriteData(fid,'object',obj,'fieldname','cfl_coefficient','format','Double');
++ WriteData(fid,'object',obj,'fieldname','interp_forcings','format','Boolean');
+ end % }}}
+ end
+ end
+Index: ../trunk-jpl/src/m/classes/SMBcomponents.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/SMBcomponents.m (revision 0)
++++ ../trunk-jpl/src/m/classes/SMBcomponents.m (revision 18000)
+@@ -0,0 +1,80 @@
++%SMBcomponents Class definition
++%
++% Usage:
++% SMBcomponents=SMBcomponents();
++
++classdef SMBcomponents
++ properties (SetAccess=public)
++ accumulation = NaN;
++ runoff = NaN;
++ evaporation = NaN;
++ end
++ methods
++ function obj = SMBcomponents(varargin) % {{{
++ switch nargin
++ case 0
++ otherwise
++ error('constructor not supported');
++ end
++ end % }}}
++ function self = extrude(self,md) % {{{
++
++ self.accumulation=project3d(md,'vector',self.accumulation,'type','node');
++ self.runoff=project3d(md,'vector',self.runoff,'type','node');
++ self.evaporation=project3d(md,'vector',self.evaporation,'type','node');
++
++ end % }}}
++ function self = initialize(self,md) % {{{
++
++ if isnan(self.accumulation)
++ self.accumulation=zeros(md.mesh.numberofvertices,1);
++ disp(' no surfaceforcings.accumulation specified: values set as zero');
++ end
++ if isnan(self.evaporation)
++ self.evaporation=zeros(md.mesh.numberofvertices,1);
++ disp(' no surfaceforcings.evaporation specified: values set as zero');
++ end
++ if isnan(self.runoff)
++ self.runoff=zeros(md.mesh.numberofvertices,1);
++ disp(' no surfaceforcings.runoff specified: values set as zero');
++ end
++
++ end % }}}
++ function md = checkconsistency(obj,md,solution,analyses) % {{{
++
++ if ismember(MasstransportAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.accumulation','forcing',1,'NaN',1);
++ end
++ if ismember(BalancethicknessAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.accumulation','size',[md.mesh.numberofvertices 1],'NaN',1);
++ end
++ if ismember(MasstransportAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.runoff','forcing',1,'NaN',1);
++ end
++ if ismember(BalancethicknessAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.runoff','size',[md.mesh.numberofvertices 1],'NaN',1);
++ end
++ if ismember(MasstransportAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.evaporation','forcing',1,'NaN',1);
++ end
++ if ismember(BalancethicknessAnalysisEnum(),analyses),
++ md = checkfield(md,'fieldname','surfaceforcings.evaporation','size',[md.mesh.numberofvertices 1],'NaN',1);
++ end
++ end % }}}
++ function disp(obj) % {{{
++ disp(sprintf(' surface forcings parameters (SMB=accumulation-runoff-evaporation) :'));
++ fielddisplay(obj,'accumulation','accumulated snow [m/yr ice eq]');
++ fielddisplay(obj,'runoff','amount of ice melt lost from the ice column [m/yr ice eq]');
++ fielddisplay(obj,'evaporation','amount of ice lost to evaporative processes [m/yr ice eq]');
++ end % }}}
++ function marshall(obj,md,fid) % {{{
++
++ yts=365.0*24.0*3600.0;
++
++ WriteData(fid,'enum',SurfaceforcingsEnum(),'data',SMBcomponentsEnum(),'format','Integer');
++ WriteData(fid,'object',obj,'class','surfaceforcings','fieldname','accumulation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1);
++ WriteData(fid,'object',obj,'class','surfaceforcings','fieldname','runoff','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1);
++ WriteData(fid,'object',obj,'class','surfaceforcings','fieldname','evaporation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1);
++ end % }}}
++ end
++end
+Index: ../trunk-jpl/src/m/enum/SurfaceforcingsEvaporationEnum.m
+===================================================================
+--- ../trunk-jpl/src/m/enum/SurfaceforcingsEvaporationEnum.m (revision 0)
++++ ../trunk-jpl/src/m/enum/SurfaceforcingsEvaporationEnum.m (revision 18000)
+@@ -0,0 +1,11 @@
++function macro=SurfaceforcingsEvaporationEnum()
++%SURFACEFORCINGSEVAPORATIONENUM - Enum of SurfaceforcingsEvaporation
++%
++% WARNING: DO NOT MODIFY THIS FILE
++% this file has been automatically generated by src/c/shared/Enum/Synchronize.sh
++% Please read src/c/shared/Enum/README for more information
++%
++% Usage:
++% macro=SurfaceforcingsEvaporationEnum()
++
++macro=StringToEnum('SurfaceforcingsEvaporation');
+Index: ../trunk-jpl/src/m/enum/SurfaceforcingsMeltEnum.m
+===================================================================
+--- ../trunk-jpl/src/m/enum/SurfaceforcingsMeltEnum.m (revision 0)
++++ ../trunk-jpl/src/m/enum/SurfaceforcingsMeltEnum.m (revision 18000)
+@@ -0,0 +1,11 @@
++function macro=SurfaceforcingsMeltEnum()
++%SURFACEFORCINGSMELTENUM - Enum of SurfaceforcingsMelt
++%
++% WARNING: DO NOT MODIFY THIS FILE
++% this file has been automatically generated by src/c/shared/Enum/Synchronize.sh
++% Please read src/c/shared/Enum/README for more information
++%
++% Usage:
++% macro=SurfaceforcingsMeltEnum()
++
++macro=StringToEnum('SurfaceforcingsMelt');
+Index: ../trunk-jpl/src/m/enum/SurfaceforcingsRunoffEnum.m
+===================================================================
+--- ../trunk-jpl/src/m/enum/SurfaceforcingsRunoffEnum.m (revision 0)
++++ ../trunk-jpl/src/m/enum/SurfaceforcingsRunoffEnum.m (revision 18000)
+@@ -0,0 +1,11 @@
++function macro=SurfaceforcingsRunoffEnum()
++%SURFACEFORCINGSRUNOFFENUM - Enum of SurfaceforcingsRunoff
++%
++% WARNING: DO NOT MODIFY THIS FILE
++% this file has been automatically generated by src/c/shared/Enum/Synchronize.sh
++% Please read src/c/shared/Enum/README for more information
++%
++% Usage:
++% macro=SurfaceforcingsRunoffEnum()
++
++macro=StringToEnum('SurfaceforcingsRunoff');
+Index: ../trunk-jpl/src/m/enum/SMBmeltcomponentsEnum.m
+===================================================================
+--- ../trunk-jpl/src/m/enum/SMBmeltcomponentsEnum.m (revision 0)
++++ ../trunk-jpl/src/m/enum/SMBmeltcomponentsEnum.m (revision 18000)
+@@ -0,0 +1,11 @@
++function macro=SMBmeltcomponentsEnum()
++%SMBMELTCOMPONENTSENUM - Enum of SMBmeltcomponents
++%
++% WARNING: DO NOT MODIFY THIS FILE
++% this file has been automatically generated by src/c/shared/Enum/Synchronize.sh
++% Please read src/c/shared/Enum/README for more information
++%
++% Usage:
++% macro=SMBmeltcomponentsEnum()
++
++macro=StringToEnum('SMBmeltcomponents');
+Index: ../trunk-jpl/src/m/enum/SurfaceforcingsAccumulationEnum.m
+===================================================================
+--- ../trunk-jpl/src/m/enum/SurfaceforcingsAccumulationEnum.m (revision 0)
++++ ../trunk-jpl/src/m/enum/SurfaceforcingsAccumulationEnum.m (revision 18000)
+@@ -0,0 +1,11 @@
++function macro=SurfaceforcingsAccumulationEnum()
++%SURFACEFORCINGSACCUMULATIONENUM - Enum of SurfaceforcingsAccumulation
++%
++% WARNING: DO NOT MODIFY THIS FILE
++% this file has been automatically generated by src/c/shared/Enum/Synchronize.sh
++% Please read src/c/shared/Enum/README for more information
++%
++% Usage:
++% macro=SurfaceforcingsAccumulationEnum()
++
++macro=StringToEnum('SurfaceforcingsAccumulation');
+Index: ../trunk-jpl/src/m/enum/SMBcomponentsEnum.m
+===================================================================
+--- ../trunk-jpl/src/m/enum/SMBcomponentsEnum.m (revision 0)
++++ ../trunk-jpl/src/m/enum/SMBcomponentsEnum.m (revision 18000)
+@@ -0,0 +1,11 @@
++function macro=SMBcomponentsEnum()
++%SMBCOMPONENTSENUM - Enum of SMBcomponents
++%
++% WARNING: DO NOT MODIFY THIS FILE
++% this file has been automatically generated by src/c/shared/Enum/Synchronize.sh
++% Please read src/c/shared/Enum/README for more information
++%
++% Usage:
++% macro=SMBcomponentsEnum()
++
++macro=StringToEnum('SMBcomponents');
+Index: ../trunk-jpl/src/m/enum/EnumDefinitions.py
+===================================================================
+--- ../trunk-jpl/src/m/enum/EnumDefinitions.py (revision 17999)
++++ ../trunk-jpl/src/m/enum/EnumDefinitions.py (revision 18000)
+@@ -321,6 +321,13 @@
+ def SurfaceforcingsBPosEnum(): return StringToEnum("SurfaceforcingsBPos")[0]
+ def SurfaceforcingsBNegEnum(): return StringToEnum("SurfaceforcingsBNeg")[0]
+ def SMBhenningEnum(): return StringToEnum("SMBhenning")[0]
++def SMBcomponentsEnum(): return StringToEnum("SMBcomponents")[0]
++def SurfaceforcingsAccumulationEnum(): return StringToEnum("SurfaceforcingsAccumulation")[0]
++def SurfaceforcingsEvaporationEnum(): return StringToEnum("SurfaceforcingsEvaporation")[0]
++def SurfaceforcingsRunoffEnum(): return StringToEnum("SurfaceforcingsRunoff")[0]
++def SMBmeltcomponentsEnum(): return StringToEnum("SMBmeltcomponents")[0]
++def SurfaceforcingsMeltEnum(): return StringToEnum("SurfaceforcingsMelt")[0]
++def SurfaceforcingsRefreezeEnum(): return StringToEnum("SurfaceforcingsRefreeze")[0]
+ def SurfaceforcingsIspddEnum(): return StringToEnum("SurfaceforcingsIspdd")[0]
+ def SurfaceforcingsIssmbgradientsEnum(): return StringToEnum("SurfaceforcingsIssmbgradients")[0]
+ def SolutionTypeEnum(): return StringToEnum("SolutionType")[0]
+Index: ../trunk-jpl/src/m/enum/SurfaceforcingsRefreezeEnum.m
+===================================================================
+--- ../trunk-jpl/src/m/enum/SurfaceforcingsRefreezeEnum.m (revision 0)
++++ ../trunk-jpl/src/m/enum/SurfaceforcingsRefreezeEnum.m (revision 18000)
+@@ -0,0 +1,11 @@
++function macro=SurfaceforcingsRefreezeEnum()
++%SURFACEFORCINGSREFREEZEENUM - Enum of SurfaceforcingsRefreeze
++%
++% WARNING: DO NOT MODIFY THIS FILE
++% this file has been automatically generated by src/c/shared/Enum/Synchronize.sh
++% Please read src/c/shared/Enum/README for more information
++%
++% Usage:
++% macro=SurfaceforcingsRefreezeEnum()
++
++macro=StringToEnum('SurfaceforcingsRefreeze');
Index: /issm/oecreview/Archive/17984-18295/ISSM-18000-18001.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18000-18001.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18000-18001.diff (revision 18296)
@@ -0,0 +1,569 @@
+Index: ../trunk-jpl/src/c/analyses/MasstransportAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/MasstransportAnalysis.cpp (revision 18000)
++++ ../trunk-jpl/src/c/analyses/MasstransportAnalysis.cpp (revision 18001)
+@@ -115,6 +115,17 @@
+ case SMBhenningEnum:
+ iomodel->FetchDataToInput(elements,SurfaceforcingsSmbrefEnum,0.);
+ break;
++ case SMBcomponentsEnum:
++ iomodel->FetchDataToInput(elements,SurfaceforcingsAccumulationEnum,0.);
++ iomodel->FetchDataToInput(elements,SurfaceforcingsEvaporationEnum,0.);
++ iomodel->FetchDataToInput(elements,SurfaceforcingsRunoffEnum,0.);
++ break;
++ case SMBmeltcomponentsEnum:
++ iomodel->FetchDataToInput(elements,SurfaceforcingsAccumulationEnum,0.);
++ iomodel->FetchDataToInput(elements,SurfaceforcingsEvaporationEnum,0.);
++ iomodel->FetchDataToInput(elements,SurfaceforcingsMeltEnum,0.);
++ iomodel->FetchDataToInput(elements,SurfaceforcingsRefreezeEnum,0.);
++ break;
+ default:
+ _error_("Surface mass balance model "<AddObject(iomodel->CopyConstantObject(TimesteppingTimeAdaptEnum));
+ parameters->AddObject(iomodel->CopyConstantObject(TimesteppingTimeStepEnum));
+ parameters->AddObject(iomodel->CopyConstantObject(TimesteppingCflCoefficientEnum));
++ parameters->AddObject(iomodel->CopyConstantObject(TimesteppingInterpForcingsEnum));
+ parameters->AddObject(iomodel->CopyConstantObject(SettingsLowmemEnum));
+ parameters->AddObject(iomodel->CopyConstantObject(DebugProfilingEnum));
+ parameters->AddObject(iomodel->CopyConstantObject(MeshAverageVertexConnectivityEnum));
+@@ -122,6 +123,12 @@
+ case SMBhenningEnum:
+ /*Nothing to add to parameters*/
+ break;
++ case SMBcomponentsEnum:
++ /*Nothing to add to parameters*/
++ break;
++ case SMBmeltcomponentsEnum:
++ /*Nothing to add to parameters*/
++ break;
+ default:
+ _error_("Surface mass balance model "<elements->Size();i++){
+ Element* element=dynamic_cast(femmodel->elements->GetObjectByOffset(i));
+- element->SmbGradients();
++
++ /*Allocate all arrays*/
++ int numvertices = element->GetNumberOfVertices();
++ IssmDouble* Href = xNew(numvertices); // reference elevation from which deviations are used to calculate the SMB adjustment
++ IssmDouble* Smbref = xNew(numvertices); // reference SMB to which deviations are added
++ IssmDouble* b_pos = xNew(numvertices); // Hs-SMB relation parameter
++ IssmDouble* b_neg = xNew(numvertices); // Hs-SMB relation paremeter
++ IssmDouble* h = xNew(numvertices); // ice thickness (m)
++ IssmDouble* s = xNew(numvertices); // surface elevation (m)
++ IssmDouble* smb = xNew(numvertices);
++
++ /*Recover SmbGradients*/
++ element->GetInputListOnVertices(Href,SurfaceforcingsHrefEnum);
++ element->GetInputListOnVertices(Smbref,SurfaceforcingsSmbrefEnum);
++ element->GetInputListOnVertices(b_pos,SurfaceforcingsBPosEnum);
++ element->GetInputListOnVertices(b_neg,SurfaceforcingsBNegEnum);
++
++ /*Recover surface elevatio at vertices: */
++ element->GetInputListOnVertices(h,ThicknessEnum);
++ element->GetInputListOnVertices(s,SurfaceEnum);
++
++ /*Get material parameters :*/
++ rho_ice=element->matpar->GetRhoIce();
++ rho_water=element->matpar->GetRhoFreshwater();
++
++ // loop over all vertices
++ for(v=0;v0){
++ smb[v]=Smbref[v]+b_pos[v]*(s[v]-Href[v]);
++ }
++ else{
++ smb[v]=Smbref[v]+b_neg[v]*(s[v]-Href[v]);
++ }
++ smb[v]=smb[v]/rho_ice; // SMB in m/y ice
++ } //end of the loop over the vertices
++
++ /*Add input to element and Free memory*/
++ element->AddInput(SurfaceforcingsMassBalanceEnum,smb,P1Enum);
++ xDelete(Href);
++ xDelete(Smbref);
++ xDelete(b_pos);
++ xDelete(b_neg);
++ xDelete(h);
++ xDelete(s);
++ xDelete(smb);
+ }
+
+ }/*}}}*/
+@@ -226,3 +282,87 @@
+ }
+
+ }/*}}}*/
++void SmbComponentsx(FemModel* femmodel){/*{{{*/
++
++ // void SmbComponentsx(acc,evap,runoff,ni){
++ // INPUT parameters: ni: working size of arrays
++ // INPUT: surface accumulation (m/yr water equivalent): acc
++ // surface evaporation (m/yr water equivalent): evap
++ // surface runoff (m/yr water equivalent): runoff
++ // OUTPUT: mass-balance (m/yr ice): agd(NA)
++ int v;
++
++ /*Loop over all the elements of this partition*/
++ for(int i=0;ielements->Size();i++){
++ Element* element=dynamic_cast(femmodel->elements->GetObjectByOffset(i));
++
++ /*Allocate all arrays*/
++ int numvertices = element->GetNumberOfVertices();
++ IssmDouble* acc = xNew(numvertices);
++ IssmDouble* evap = xNew(numvertices);
++ IssmDouble* runoff = xNew(numvertices);
++ IssmDouble* smb = xNew(numvertices);
++
++ /*Recover Smb Components*/
++ element->GetInputListOnVertices(acc,SurfaceforcingsAccumulationEnum);
++ element->GetInputListOnVertices(evap,SurfaceforcingsEvaporationEnum);
++ element->GetInputListOnVertices(runoff,SurfaceforcingsRunoffEnum);
++
++ // loop over all vertices
++ for(v=0;vAddInput(SurfaceforcingsMassBalanceEnum,smb,P1Enum);
++ xDelete(acc);
++ xDelete(evap);
++ xDelete(runoff);
++ xDelete(smb);
++ }
++
++}/*}}}*/
++void SmbMeltComponentsx(FemModel* femmodel){/*{{{*/
++
++ // void SmbMeltComponentsx(acc,evap,melt,refreeze,ni){
++ // INPUT parameters: ni: working size of arrays
++ // INPUT: surface accumulation (m/yr water equivalent): acc
++ // surface evaporation (m/yr water equivalent): evap
++ // surface melt (m/yr water equivalent): melt
++ // refreeze of surface melt (m/yr water equivalent): refreeze
++ // OUTPUT: mass-balance (m/yr ice): agd(NA)
++ int v;
++
++ /*Loop over all the elements of this partition*/
++ for(int i=0;ielements->Size();i++){
++ Element* element=dynamic_cast(femmodel->elements->GetObjectByOffset(i));
++
++ /*Allocate all arrays*/
++ int numvertices = element->GetNumberOfVertices();
++ IssmDouble* acc = xNew(numvertices);
++ IssmDouble* evap = xNew(numvertices);
++ IssmDouble* melt = xNew(numvertices);
++ IssmDouble* refreeze = xNew(numvertices);
++ IssmDouble* smb = xNew(numvertices);
++
++ /*Recover Smb Components*/
++ element->GetInputListOnVertices(acc,SurfaceforcingsAccumulationEnum);
++ element->GetInputListOnVertices(evap,SurfaceforcingsEvaporationEnum);
++ element->GetInputListOnVertices(melt,SurfaceforcingsMeltEnum);
++ element->GetInputListOnVertices(refreeze,SurfaceforcingsRefreezeEnum);
++
++ // loop over all vertices
++ for(v=0;vAddInput(SurfaceforcingsMassBalanceEnum,smb,P1Enum);
++ xDelete(acc);
++ xDelete(evap);
++ xDelete(melt);
++ xDelete(refreeze);
++ xDelete(smb);
++ }
++
++}/*}}}*/
+Index: ../trunk-jpl/src/c/classes/Materials/Matpar.cpp
+===================================================================
+--- ../trunk-jpl/src/c/classes/Materials/Matpar.cpp (revision 18000)
++++ ../trunk-jpl/src/c/classes/Materials/Matpar.cpp (revision 18001)
+@@ -55,6 +55,12 @@
+ case SMBhenningEnum:
+ /*Nothing to add*/
+ break;
++ case SMBcomponentsEnum:
++ /*Nothing to add*/
++ break;
++ case SMBmeltcomponentsEnum:
++ /*Nothing to add*/
++ break;
+ default:
+ _error_("Surface mass balance model "<GetRhoIce();
+- rho_water=matpar->GetRhoFreshwater();
+-
+- // loop over all vertices
+- for(i=0;i0){
+- smb[i]=Smbref[i]+b_pos[i]*(s[i]-Href[i]);
+- }
+- else{
+- smb[i]=Smbref[i]+b_neg[i]*(s[i]-Href[i]);
+- }
+- smb[i]=smb[i]/rho_ice; // SMB in m/y ice
+- } //end of the loop over the vertices
+- /*Update inputs*/
+- this->inputs->AddInput(new TriaInput(SurfaceforcingsMassBalanceEnum,&smb[0],P1Enum));
+-}
+-/*}}}*/
+ Seg* Tria::SpawnSeg(int index1,int index2){/*{{{*/
+
+ int analysis_counter;
+Index: ../trunk-jpl/src/c/classes/Elements/Tria.h
+===================================================================
+--- ../trunk-jpl/src/c/classes/Elements/Tria.h (revision 18000)
++++ ../trunk-jpl/src/c/classes/Elements/Tria.h (revision 18001)
+@@ -92,7 +92,6 @@
+ void PositiveDegreeDay(IssmDouble* pdds,IssmDouble* pds,IssmDouble signorm);
+ void ReduceMatrices(ElementMatrix* Ke,ElementVector* pe);
+ void ResetFSBasalBoundaryCondition(void);
+- void SmbGradients();
+ Element* SpawnBasalElement(void);
+ Element* SpawnTopElement(void);
+ int VelocityInterpolation();
+Index: ../trunk-jpl/src/c/classes/Elements/Penta.cpp
+===================================================================
+--- ../trunk-jpl/src/c/classes/Elements/Penta.cpp (revision 18000)
++++ ../trunk-jpl/src/c/classes/Elements/Penta.cpp (revision 18001)
+@@ -2002,51 +2002,6 @@
+ return tria;
+ }
+ /*}}}*/
+-void Penta::SmbGradients(void){/*{{{*/
+-
+- int i;
+-
+- // input
+- IssmDouble h[NUMVERTICES]; // ice thickness (m)
+- IssmDouble s[NUMVERTICES]; // surface elevation (m)
+- IssmDouble b_pos[NUMVERTICES]; // Hs-SMB relation parameter
+- IssmDouble b_neg[NUMVERTICES]; // Hs-SMB relation paremeter
+- IssmDouble Href[NUMVERTICES]; // reference elevation from which deviations are used to calculate the SMB adjustment
+- IssmDouble Smbref[NUMVERTICES]; // reference SMB to which deviations are added
+- IssmDouble rho_water; // density of fresh water
+- IssmDouble rho_ice; // density of ice
+-
+- // output
+- IssmDouble smb[NUMVERTICES]; // surface mass balance (m/yr ice)
+-
+- /*Recover SmbGradients*/
+- GetInputListOnVertices(&Href[0],SurfaceforcingsHrefEnum);
+- GetInputListOnVertices(&Smbref[0],SurfaceforcingsSmbrefEnum);
+- GetInputListOnVertices(&b_pos[0],SurfaceforcingsBPosEnum);
+- GetInputListOnVertices(&b_neg[0],SurfaceforcingsBNegEnum);
+-
+- /*Recover surface elevatio at vertices: */
+- GetInputListOnVertices(&h[0],ThicknessEnum);
+- GetInputListOnVertices(&s[0],SurfaceEnum);
+-
+- /*Get material parameters :*/
+- rho_ice=matpar->GetRhoIce();
+- rho_water=matpar->GetRhoFreshwater();
+-
+- // loop over all vertices
+- for(i=0;i0){
+- smb[i]=Smbref[i]+b_pos[i]*(s[i]-Href[i]);
+- }
+- else{
+- smb[i]=Smbref[i]+b_neg[i]*(s[i]-Href[i]);
+- }
+- smb[i]=smb[i]/rho_ice; // SMB in m/y ice
+- } //end of the loop over the vertices
+- /*Update inputs*/
+- this->inputs->AddInput(new PentaInput(SurfaceforcingsMassBalanceEnum,&smb[0],P1Enum));
+-}
+-/*}}}*/
+ IssmDouble Penta::SurfaceArea(void){/*{{{*/
+
+ int approximation;
+Index: ../trunk-jpl/src/c/classes/Elements/Penta.h
+===================================================================
+--- ../trunk-jpl/src/c/classes/Elements/Penta.h (revision 18000)
++++ ../trunk-jpl/src/c/classes/Elements/Penta.h (revision 18001)
+@@ -94,7 +94,6 @@
+ void PositiveDegreeDay(IssmDouble* pdds,IssmDouble* pds,IssmDouble signorm);
+ void ReduceMatrices(ElementMatrix* Ke,ElementVector* pe);
+ void ResetFSBasalBoundaryCondition(void);
+- void SmbGradients();
+ void SetTemporaryElementType(int element_type_in);
+ Element* SpawnBasalElement(void);
+ Element* SpawnTopElement(void);
+Index: ../trunk-jpl/src/c/classes/Elements/Seg.h
+===================================================================
+--- ../trunk-jpl/src/c/classes/Elements/Seg.h (revision 18000)
++++ ../trunk-jpl/src/c/classes/Elements/Seg.h (revision 18001)
+@@ -135,7 +135,6 @@
+ void ResetFSBasalBoundaryCondition(void){_error_("not implemented yet");};
+ void ReduceMatrices(ElementMatrix* Ke,ElementVector* pe){_error_("not implemented yet");};
+ void SetTemporaryElementType(int element_type_in){_error_("not implemented yet");};
+- void SmbGradients(){_error_("not implemented yet");};
+ IssmDouble SurfaceArea(void){_error_("not implemented yet");};
+ void Update(int index, IoModel* iomodel,int analysis_counter,int analysis_type,int finitelement){_error_("not implemented yet");};
+ IssmDouble TimeAdapt(){_error_("not implemented yet");};
+Index: ../trunk-jpl/src/c/classes/Elements/Tetra.h
+===================================================================
+--- ../trunk-jpl/src/c/classes/Elements/Tetra.h (revision 18000)
++++ ../trunk-jpl/src/c/classes/Elements/Tetra.h (revision 18001)
+@@ -139,7 +139,6 @@
+ void ResetFSBasalBoundaryCondition(void);
+ void ReduceMatrices(ElementMatrix* Ke,ElementVector* pe);
+ void SetTemporaryElementType(int element_type_in){_error_("not implemented yet");};
+- void SmbGradients(){_error_("not implemented yet");};
+ IssmDouble SurfaceArea(void){_error_("not implemented yet");};
+ void Update(int index, IoModel* iomodel,int analysis_counter,int analysis_type,int finitelement);
+ IssmDouble TimeAdapt(){_error_("not implemented yet");};
+Index: ../trunk-jpl/src/c/classes/Inputs/TransientInput.cpp
+===================================================================
+--- ../trunk-jpl/src/c/classes/Inputs/TransientInput.cpp (revision 18000)
++++ ../trunk-jpl/src/c/classes/Inputs/TransientInput.cpp (revision 18001)
+@@ -519,7 +519,11 @@
+ IssmDouble alpha1,alpha2;
+ int found;
+ int offset;
++ bool interp;
+
++ /*First, recover interp bool: */
++ this->parameters->FindParam(&interp,TimesteppingInterpForcingsEnum);
++
+ Input *input = NULL;
+ Input *input1 = NULL;
+ Input *input2 = NULL;
+@@ -534,12 +538,12 @@
+ _assert_(intimetimesteps[0]);
+ input=(Input*)((Input*)this->inputs->GetObjectByOffset(0))->copy();
+ }
+- else if(offset==(this->numtimesteps-1)){
++ else if(offset==(this->numtimesteps-1) || !interp){
+ /*get values for the last time: */
+ _assert_(intime>=this->timesteps[offset]);
+ input=(Input*)((Input*)this->inputs->GetObjectByOffset(offset))->copy();
+ }
+- else{
++ else {
+ /*get values between two times [offset:offset+1[, Interpolate linearly*/
+ _assert_(intime>=this->timesteps[offset] && intimetimesteps[offset+1]);
+ deltat=this->timesteps[offset+1]-this->timesteps[offset];
Index: /issm/oecreview/Archive/17984-18295/ISSM-18001-18002.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18001-18002.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18001-18002.diff (revision 18296)
@@ -0,0 +1,936 @@
+Index: ../trunk-jpl/test/NightlyRun/test337.py
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test337.py (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test337.py (revision 18002)
+@@ -0,0 +1,76 @@
++import numpy
++from model import *
++from triangle import *
++from setmask import *
++from parameterize import *
++from setflowequation import *
++from EnumDefinitions import *
++from solve import *
++from MatlabFuncs import *
++
++md=triangle(model(),'../Exp/Square.exp',150000.)
++md=setmask(md,'all','')
++md=parameterize(md,'../Par/SquareShelf.py')
++md.extrude(3,1.)
++md=setflowequation(md,'HO','all')
++md.cluster=generic('name',oshostname(),'np',3)
++
++md.timestepping.time_step=1.
++md.settings.output_frequency=1
++md.timestepping.final_time=4.
++
++#Set up transient
++smb=numpy.ones((md.mesh.numberofvertices,1))*3.6
++smb=numpy.hstack((smb,smb*-1.))
++
++md.surfaceforcings=SMBcomponents();
++md.surfaceforcings.accumulation=numpy.vstack((smb*2, [1.5,3.]));
++md.surfaceforcings.runoff=numpy.vstack((smb/2, [1.5,3.]));
++md.surfaceforcings.evaporation=numpy.vstack((smb/2, [1.5,3.]));
++md.transient.isthermal=False
++
++md=solve(md,TransientSolutionEnum())
++
++#Fields and tolerances to track changes
++field_names=['Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', \
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', \
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', \
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4']
++field_tolerances=[1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10]
++field_values=[\
++ md.results.TransientSolution[0].Vx,\
++ md.results.TransientSolution[0].Vy,\
++ md.results.TransientSolution[0].Vel,\
++ md.results.TransientSolution[0].Pressure,\
++ md.results.TransientSolution[0].Base,\
++ md.results.TransientSolution[0].Surface,\
++ md.results.TransientSolution[0].Thickness,\
++ md.results.TransientSolution[0].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[1].Vx,\
++ md.results.TransientSolution[1].Vy,\
++ md.results.TransientSolution[1].Vel,\
++ md.results.TransientSolution[1].Pressure,\
++ md.results.TransientSolution[1].Base,\
++ md.results.TransientSolution[1].Surface,\
++ md.results.TransientSolution[1].Thickness,\
++ md.results.TransientSolution[1].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[2].Vx,\
++ md.results.TransientSolution[2].Vy,\
++ md.results.TransientSolution[2].Vel,\
++ md.results.TransientSolution[2].Pressure,\
++ md.results.TransientSolution[2].Base,\
++ md.results.TransientSolution[2].Surface,\
++ md.results.TransientSolution[2].Thickness,\
++ md.results.TransientSolution[2].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[3].Vx,\
++ md.results.TransientSolution[3].Vy,\
++ md.results.TransientSolution[3].Vel,\
++ md.results.TransientSolution[3].Pressure,\
++ md.results.TransientSolution[3].Base,\
++ md.results.TransientSolution[3].Surface,\
++ md.results.TransientSolution[3].Thickness,\
++ md.results.TransientSolution[3].SurfaceforcingsMassBalance,\
++ ]
+Index: ../trunk-jpl/test/NightlyRun/test239.py
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test239.py (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test239.py (revision 18002)
+@@ -0,0 +1,78 @@
++import numpy
++from model import *
++from triangle import *
++from setmask import *
++from parameterize import *
++from setflowequation import *
++from EnumDefinitions import *
++from solve import *
++from MatlabFuncs import *
++
++md=triangle(model(),'../Exp/Square.exp',350000.)
++md=setmask(md,'all','')
++md=parameterize(md,'../Par/SquareShelf.py')
++md.extrude(3,1.)
++md=setflowequation(md,'HO','all')
++md.cluster=generic('name',oshostname(),'np',3)
++
++md.timestepping.time_step=1.
++md.settings.output_frequency=1
++md.timestepping.final_time=4.
++md.timestepping.interp_forcings=False
++
++#Set up transient
++smb=numpy.ones((md.mesh.numberofvertices,1))*3.6
++smb=numpy.hstack((smb,smb*-1.))
++
++md.surfaceforcings.mass_balance=numpy.vstack((smb,[1.5,3.]))
++md.transient.isthermal=False
++
++md=solve(md,TransientSolutionEnum())
++
++#Fields and tolerances to track changes
++field_names =['Vx1','Vy1','Vz1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', \
++ 'Vx2','Vy2','Vz2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', \
++ 'Vx3','Vy3','Vz3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', \
++ 'Vx4','Vy4','Vz4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassbalance4']
++field_tolerances=[1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,\
++ 1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,\
++ 1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,\
++ 1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13,1e-13]
++field_values=[\
++ md.results.TransientSolution[0].Vx,\
++ md.results.TransientSolution[0].Vy,\
++ md.results.TransientSolution[0].Vz,\
++ md.results.TransientSolution[0].Vel,\
++ md.results.TransientSolution[0].Pressure,\
++ md.results.TransientSolution[0].Base,\
++ md.results.TransientSolution[0].Surface,\
++ md.results.TransientSolution[0].Thickness,\
++ md.results.TransientSolution[0].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[1].Vx,\
++ md.results.TransientSolution[1].Vy,\
++ md.results.TransientSolution[1].Vz,\
++ md.results.TransientSolution[1].Vel,\
++ md.results.TransientSolution[1].Pressure,\
++ md.results.TransientSolution[1].Base,\
++ md.results.TransientSolution[1].Surface,\
++ md.results.TransientSolution[1].Thickness,\
++ md.results.TransientSolution[1].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[2].Vx,\
++ md.results.TransientSolution[2].Vy,\
++ md.results.TransientSolution[2].Vz,\
++ md.results.TransientSolution[2].Vel,\
++ md.results.TransientSolution[2].Pressure,\
++ md.results.TransientSolution[2].Base,\
++ md.results.TransientSolution[2].Surface,\
++ md.results.TransientSolution[2].Thickness,\
++ md.results.TransientSolution[2].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[3].Vx,\
++ md.results.TransientSolution[3].Vy,\
++ md.results.TransientSolution[3].Vz,\
++ md.results.TransientSolution[3].Vel,\
++ md.results.TransientSolution[3].Pressure,\
++ md.results.TransientSolution[3].Base,\
++ md.results.TransientSolution[3].Surface,\
++ md.results.TransientSolution[3].Thickness,\
++ md.results.TransientSolution[3].SurfaceforcingsMassBalance,\
++ ]
+Index: ../trunk-jpl/test/NightlyRun/test337.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test337.m (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test337.m (revision 18002)
+@@ -0,0 +1,66 @@
++md=triangle(model(),'../Exp/Square.exp',150000.);
++md=setmask(md,'all','');
++md=parameterize(md,'../Par/SquareShelf.par');
++md=extrude(md,3,1.);
++md=setflowequation(md,'HO','all');
++md.cluster=generic('name',oshostname(),'np',3);
++
++md.timestepping.time_step=1.;
++md.settings.output_frequency=1;
++md.timestepping.final_time=4.;
++
++%Set up transient
++smb=ones(md.mesh.numberofvertices,1)*3.6;
++smb=[ smb smb*-1. ];
++
++md.surfaceforcings=SMBcomponents();
++md.surfaceforcings.accumulation=[smb*2; [1.5 3.]];
++md.surfaceforcings.runoff=[smb/2; [1.5 3.]];
++md.surfaceforcings.evaporation=[smb/2; [1.5 3.]];
++md.transient.isthermal=0;
++
++md=solve(md,TransientSolutionEnum());
++
++%Fields and tolerances to track changes
++field_names={'Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', ...
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', ...
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', ...
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4'};
++field_tolerances={1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10};
++field_values={...
++ (md.results.TransientSolution(1).Vx),...
++ (md.results.TransientSolution(1).Vy),...
++ (md.results.TransientSolution(1).Vel),...
++ (md.results.TransientSolution(1).Pressure),...
++ (md.results.TransientSolution(1).Base),...
++ (md.results.TransientSolution(1).Surface),...
++ (md.results.TransientSolution(1).Thickness),...
++ (md.results.TransientSolution(1).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(2).Vx),...
++ (md.results.TransientSolution(2).Vy),...
++ (md.results.TransientSolution(2).Vel),...
++ (md.results.TransientSolution(2).Pressure),...
++ (md.results.TransientSolution(2).Base),...
++ (md.results.TransientSolution(2).Surface),...
++ (md.results.TransientSolution(2).Thickness),...
++ (md.results.TransientSolution(2).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(3).Vx),...
++ (md.results.TransientSolution(3).Vy),...
++ (md.results.TransientSolution(3).Vel),...
++ (md.results.TransientSolution(3).Pressure),...
++ (md.results.TransientSolution(3).Base),...
++ (md.results.TransientSolution(3).Surface),...
++ (md.results.TransientSolution(3).Thickness),...
++ (md.results.TransientSolution(3).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(4).Vx),...
++ (md.results.TransientSolution(4).Vy),...
++ (md.results.TransientSolution(4).Vel),...
++ (md.results.TransientSolution(4).Pressure),...
++ (md.results.TransientSolution(4).Base),...
++ (md.results.TransientSolution(4).Surface),...
++ (md.results.TransientSolution(4).Thickness),...
++ (md.results.TransientSolution(4).SurfaceforcingsMassBalance),...
++ };
+Index: ../trunk-jpl/test/NightlyRun/test239.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test239.m (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test239.m (revision 18002)
+@@ -0,0 +1,69 @@
++md=triangle(model(),'../Exp/Square.exp',350000.);
++md=setmask(md,'all','');
++md=parameterize(md,'../Par/SquareShelf.par');
++md=extrude(md,3,1.);
++md=setflowequation(md,'HO','all');
++md.cluster=generic('name',oshostname(),'np',3);
++
++md.timestepping.time_step=1;
++md.settings.output_frequency=1;
++md.timestepping.final_time=4;
++md.timestepping.interp_forcings=0;
++
++%Set up transient
++smb=ones(md.mesh.numberofvertices,1)*3.6;
++smb=[ smb smb*-1. ];
++
++md.surfaceforcings.mass_balance=smb;
++md.surfaceforcings.mass_balance(end+1,:)=[1.5 3.];
++md.transient.isthermal=0;
++
++md=solve(md,TransientSolutionEnum());
++
++%Fields and tolerances to track changes
++field_names ={'Vx1','Vy1','Vz1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', ...
++ 'Vx2','Vy2','Vz2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', ...
++ 'Vx3','Vy3','Vz3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', ...
++ 'Vx4','Vy4','Vz4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassbalance4'};
++field_tolerances={1e-09,1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-13,...
++ 1e-09,1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-13,...
++ 1e-09,1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-13,...
++ 1e-09,1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-13};
++field_values={...
++ (md.results.TransientSolution(1).Vx),...
++ (md.results.TransientSolution(1).Vy),...
++ (md.results.TransientSolution(1).Vz),...
++ (md.results.TransientSolution(1).Vel),...
++ (md.results.TransientSolution(1).Pressure),...
++ (md.results.TransientSolution(1).Base),...
++ (md.results.TransientSolution(1).Surface),...
++ (md.results.TransientSolution(1).Thickness),...
++ (md.results.TransientSolution(1).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(2).Vx),...
++ (md.results.TransientSolution(2).Vy),...
++ (md.results.TransientSolution(2).Vz),...
++ (md.results.TransientSolution(2).Vel),...
++ (md.results.TransientSolution(2).Pressure),...
++ (md.results.TransientSolution(2).Base),...
++ (md.results.TransientSolution(2).Surface),...
++ (md.results.TransientSolution(2).Thickness),...
++ (md.results.TransientSolution(2).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(3).Vx),...
++ (md.results.TransientSolution(3).Vy),...
++ (md.results.TransientSolution(3).Vz),...
++ (md.results.TransientSolution(3).Vel),...
++ (md.results.TransientSolution(3).Pressure),...
++ (md.results.TransientSolution(3).Base),...
++ (md.results.TransientSolution(3).Surface),...
++ (md.results.TransientSolution(3).Thickness),...
++ (md.results.TransientSolution(3).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(4).Vx),...
++ (md.results.TransientSolution(4).Vy),...
++ (md.results.TransientSolution(4).Vz),...
++ (md.results.TransientSolution(4).Vel),...
++ (md.results.TransientSolution(4).Pressure),...
++ (md.results.TransientSolution(4).Base),...
++ (md.results.TransientSolution(4).Surface),...
++ (md.results.TransientSolution(4).Thickness),...
++ (md.results.TransientSolution(4).SurfaceforcingsMassBalance),...
++ };
+Index: ../trunk-jpl/test/NightlyRun/test338.py
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test338.py (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test338.py (revision 18002)
+@@ -0,0 +1,76 @@
++import numpy
++from model import *
++from triangle import *
++from setmask import *
++from parameterize import *
++from setflowequation import *
++from EnumDefinitions import *
++from solve import *
++from MatlabFuncs import *
++
++md=triangle(model(),'../Exp/Square.exp',150000.)
++md=setmask(md,'all','')
++md=parameterize(md,'../Par/SquareShelf.py')
++md=setflowequation(md,'SSA','all')
++md.cluster=generic('name',oshostname(),'np',3)
++
++md.timestepping.time_step=1.
++md.settings.output_frequency=1
++md.timestepping.final_time=4.
++
++#Set up transient
++smb=numpy.ones((md.mesh.numberofvertices,1))*3.6
++smb=numpy.hstack((smb,smb*-1.))
++
++md.surfaceforcings=SMBmeltcomponents();
++md.surfaceforcings.accumulation=numpy.vstack((smb, [1.5,3.]));
++md.surfaceforcings.evaporation=numpy.vstack((smb/2, [1.5,3.]));
++md.surfaceforcings.melt=numpy.vstack((smb/2, [1.5,3.]));
++md.surfaceforcings.refreeze=numpy.vstack((smb, [1.5,3.]));
++md.transient.isthermal=False
++
++md=solve(md,TransientSolutionEnum())
++
++#Fields and tolerances to track changes
++field_names=['Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', \
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', \
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', \
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4']
++field_tolerances=[1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10]
++field_values=[\
++ md.results.TransientSolution[0].Vx,\
++ md.results.TransientSolution[0].Vy,\
++ md.results.TransientSolution[0].Vel,\
++ md.results.TransientSolution[0].Pressure,\
++ md.results.TransientSolution[0].Base,\
++ md.results.TransientSolution[0].Surface,\
++ md.results.TransientSolution[0].Thickness,\
++ md.results.TransientSolution[0].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[1].Vx,\
++ md.results.TransientSolution[1].Vy,\
++ md.results.TransientSolution[1].Vel,\
++ md.results.TransientSolution[1].Pressure,\
++ md.results.TransientSolution[1].Base,\
++ md.results.TransientSolution[1].Surface,\
++ md.results.TransientSolution[1].Thickness,\
++ md.results.TransientSolution[1].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[2].Vx,\
++ md.results.TransientSolution[2].Vy,\
++ md.results.TransientSolution[2].Vel,\
++ md.results.TransientSolution[2].Pressure,\
++ md.results.TransientSolution[2].Base,\
++ md.results.TransientSolution[2].Surface,\
++ md.results.TransientSolution[2].Thickness,\
++ md.results.TransientSolution[2].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[3].Vx,\
++ md.results.TransientSolution[3].Vy,\
++ md.results.TransientSolution[3].Vel,\
++ md.results.TransientSolution[3].Pressure,\
++ md.results.TransientSolution[3].Base,\
++ md.results.TransientSolution[3].Surface,\
++ md.results.TransientSolution[3].Thickness,\
++ md.results.TransientSolution[3].SurfaceforcingsMassBalance,\
++ ]
+Index: ../trunk-jpl/test/NightlyRun/test338.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test338.m (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test338.m (revision 18002)
+@@ -0,0 +1,66 @@
++md=triangle(model(),'../Exp/Square.exp',150000.);
++md=setmask(md,'all','');
++md=parameterize(md,'../Par/SquareShelf.par');
++md=setflowequation(md,'SSA','all');
++md.cluster=generic('name',oshostname(),'np',3);
++
++md.timestepping.time_step=1.;
++md.settings.output_frequency=1;
++md.timestepping.final_time=4.;
++
++%Set up transient
++smb=ones(md.mesh.numberofvertices,1)*3.6;
++smb=[ smb smb*-1. ];
++
++md.surfaceforcings=SMBmeltcomponents();
++md.surfaceforcings.accumulation=[smb; [1.5 3.]];
++md.surfaceforcings.melt=[smb/2; [1.5 3.]];
++md.surfaceforcings.refreeze=[smb; [1.5 3.]];
++md.surfaceforcings.evaporation=[smb/2; [1.5 3.]];
++md.transient.isthermal=0;
++
++md=solve(md,TransientSolutionEnum());
++
++%Fields and tolerances to track changes
++field_names={'Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', ...
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', ...
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', ...
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4'};
++field_tolerances={1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10};
++field_values={...
++ (md.results.TransientSolution(1).Vx),...
++ (md.results.TransientSolution(1).Vy),...
++ (md.results.TransientSolution(1).Vel),...
++ (md.results.TransientSolution(1).Pressure),...
++ (md.results.TransientSolution(1).Base),...
++ (md.results.TransientSolution(1).Surface),...
++ (md.results.TransientSolution(1).Thickness),...
++ (md.results.TransientSolution(1).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(2).Vx),...
++ (md.results.TransientSolution(2).Vy),...
++ (md.results.TransientSolution(2).Vel),...
++ (md.results.TransientSolution(2).Pressure),...
++ (md.results.TransientSolution(2).Base),...
++ (md.results.TransientSolution(2).Surface),...
++ (md.results.TransientSolution(2).Thickness),...
++ (md.results.TransientSolution(2).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(3).Vx),...
++ (md.results.TransientSolution(3).Vy),...
++ (md.results.TransientSolution(3).Vel),...
++ (md.results.TransientSolution(3).Pressure),...
++ (md.results.TransientSolution(3).Base),...
++ (md.results.TransientSolution(3).Surface),...
++ (md.results.TransientSolution(3).Thickness),...
++ (md.results.TransientSolution(3).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(4).Vx),...
++ (md.results.TransientSolution(4).Vy),...
++ (md.results.TransientSolution(4).Vel),...
++ (md.results.TransientSolution(4).Pressure),...
++ (md.results.TransientSolution(4).Base),...
++ (md.results.TransientSolution(4).Surface),...
++ (md.results.TransientSolution(4).Thickness),...
++ (md.results.TransientSolution(4).SurfaceforcingsMassBalance),...
++ };
+Index: ../trunk-jpl/test/NightlyRun/test339.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test339.m (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test339.m (revision 18002)
+@@ -0,0 +1,67 @@
++md=triangle(model(),'../Exp/Square.exp',150000.);
++md=setmask(md,'all','');
++md=parameterize(md,'../Par/SquareShelf.par');
++md=extrude(md,3,1.);
++md=setflowequation(md,'HO','all');
++md.cluster=generic('name',oshostname(),'np',3);
++
++md.timestepping.time_step=1.;
++md.settings.output_frequency=1;
++md.timestepping.final_time=4.;
++
++%Set up transient
++smb=ones(md.mesh.numberofvertices,1)*3.6;
++smb=[ smb smb*-1. ];
++
++md.surfaceforcings=SMBmeltcomponents();
++md.surfaceforcings.accumulation=[smb; [1.5 3.]];
++md.surfaceforcings.melt=[smb/2; [1.5 3.]];
++md.surfaceforcings.refreeze=[smb; [1.5 3.]];
++md.surfaceforcings.evaporation=[smb/2; [1.5 3.]];
++md.transient.isthermal=0;
++
++md=solve(md,TransientSolutionEnum());
++
++%Fields and tolerances to track changes
++field_names={'Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', ...
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', ...
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', ...
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4'};
++field_tolerances={1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10};
++field_values={...
++ (md.results.TransientSolution(1).Vx),...
++ (md.results.TransientSolution(1).Vy),...
++ (md.results.TransientSolution(1).Vel),...
++ (md.results.TransientSolution(1).Pressure),...
++ (md.results.TransientSolution(1).Base),...
++ (md.results.TransientSolution(1).Surface),...
++ (md.results.TransientSolution(1).Thickness),...
++ (md.results.TransientSolution(1).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(2).Vx),...
++ (md.results.TransientSolution(2).Vy),...
++ (md.results.TransientSolution(2).Vel),...
++ (md.results.TransientSolution(2).Pressure),...
++ (md.results.TransientSolution(2).Base),...
++ (md.results.TransientSolution(2).Surface),...
++ (md.results.TransientSolution(2).Thickness),...
++ (md.results.TransientSolution(2).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(3).Vx),...
++ (md.results.TransientSolution(3).Vy),...
++ (md.results.TransientSolution(3).Vel),...
++ (md.results.TransientSolution(3).Pressure),...
++ (md.results.TransientSolution(3).Base),...
++ (md.results.TransientSolution(3).Surface),...
++ (md.results.TransientSolution(3).Thickness),...
++ (md.results.TransientSolution(3).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(4).Vx),...
++ (md.results.TransientSolution(4).Vy),...
++ (md.results.TransientSolution(4).Vel),...
++ (md.results.TransientSolution(4).Pressure),...
++ (md.results.TransientSolution(4).Base),...
++ (md.results.TransientSolution(4).Surface),...
++ (md.results.TransientSolution(4).Thickness),...
++ (md.results.TransientSolution(4).SurfaceforcingsMassBalance),...
++ };
+Index: ../trunk-jpl/test/NightlyRun/test339.py
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test339.py (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test339.py (revision 18002)
+@@ -0,0 +1,77 @@
++import numpy
++from model import *
++from triangle import *
++from setmask import *
++from parameterize import *
++from setflowequation import *
++from EnumDefinitions import *
++from solve import *
++from MatlabFuncs import *
++
++md=triangle(model(),'../Exp/Square.exp',150000.)
++md=setmask(md,'all','')
++md=parameterize(md,'../Par/SquareShelf.py')
++md.extrude(3,1.)
++md=setflowequation(md,'HO','all')
++md.cluster=generic('name',oshostname(),'np',3)
++
++md.timestepping.time_step=1.
++md.settings.output_frequency=1
++md.timestepping.final_time=4.
++
++#Set up transient
++smb=numpy.ones((md.mesh.numberofvertices,1))*3.6
++smb=numpy.hstack((smb,smb*-1.))
++
++md.surfaceforcings=SMBmeltcomponents();
++md.surfaceforcings.accumulation=numpy.vstack((smb, [1.5,3.]));
++md.surfaceforcings.evaporation=numpy.vstack((smb/2, [1.5,3.]));
++md.surfaceforcings.melt=numpy.vstack((smb/2, [1.5,3.]));
++md.surfaceforcings.refreeze=numpy.vstack((smb, [1.5,3.]));
++md.transient.isthermal=False
++
++md=solve(md,TransientSolutionEnum())
++
++#Fields and tolerances to track changes
++field_names=['Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', \
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', \
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', \
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4']
++field_tolerances=[1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10]
++field_values=[\
++ md.results.TransientSolution[0].Vx,\
++ md.results.TransientSolution[0].Vy,\
++ md.results.TransientSolution[0].Vel,\
++ md.results.TransientSolution[0].Pressure,\
++ md.results.TransientSolution[0].Base,\
++ md.results.TransientSolution[0].Surface,\
++ md.results.TransientSolution[0].Thickness,\
++ md.results.TransientSolution[0].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[1].Vx,\
++ md.results.TransientSolution[1].Vy,\
++ md.results.TransientSolution[1].Vel,\
++ md.results.TransientSolution[1].Pressure,\
++ md.results.TransientSolution[1].Base,\
++ md.results.TransientSolution[1].Surface,\
++ md.results.TransientSolution[1].Thickness,\
++ md.results.TransientSolution[1].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[2].Vx,\
++ md.results.TransientSolution[2].Vy,\
++ md.results.TransientSolution[2].Vel,\
++ md.results.TransientSolution[2].Pressure,\
++ md.results.TransientSolution[2].Base,\
++ md.results.TransientSolution[2].Surface,\
++ md.results.TransientSolution[2].Thickness,\
++ md.results.TransientSolution[2].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[3].Vx,\
++ md.results.TransientSolution[3].Vy,\
++ md.results.TransientSolution[3].Vel,\
++ md.results.TransientSolution[3].Pressure,\
++ md.results.TransientSolution[3].Base,\
++ md.results.TransientSolution[3].Surface,\
++ md.results.TransientSolution[3].Thickness,\
++ md.results.TransientSolution[3].SurfaceforcingsMassBalance,\
++ ]
+Index: ../trunk-jpl/test/NightlyRun/IdToName.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/IdToName.m (revision 18001)
++++ ../trunk-jpl/test/NightlyRun/IdToName.m (revision 18002)
+@@ -66,6 +66,8 @@
+ case 235, name='SquareShelfTranForceNeg2dDakotaLocal';
+ case 236, name='SquareShelfTranIspddIsdeltaSSA2d';
+ case 237, name='SquareShelfTranIspddIsdeltaSSA3d';
++ case 238, name='SquareShelfTranForceNoInterp2d';
++ case 239, name='SquareShelfTranForceNoInterp3d';
+ case 270, name='SquareShelfStressSSA2dDamage';
+ case 271, name='SquareShelfStressSSA2dDamageTran';
+ case 272, name='SquareShelfCMZSSA2dDamage';
+@@ -108,6 +110,10 @@
+ case 333, name='SquareSheetHydrologyDCTwoLayers';
+ case 334, name='SquareSheetConstrainedExtrudedHydrologyDC';
+ case 335, name='SquareSheetExtrudedHydrologyDCTwoLayers';
++ case 336, name='SquareSheetConstrainedSmbComponents2d';
++ case 337, name='SquareSheetConstrainedSmbComponents3d';
++ case 338, name='SquareSheetConstrainedSmbMeltComponents2d';
++ case 339, name='SquareSheetConstrainedSmbMeltComponents3d';
+ case 401, name='SquareSheetShelfStressSSA2d';
+ case 402, name='SquareSheetShelfStressSSA3d';
+ case 403, name='SquareSheetShelfStressHO';
+Index: ../trunk-jpl/test/NightlyRun/test336.py
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test336.py (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test336.py (revision 18002)
+@@ -0,0 +1,75 @@
++import numpy
++from model import *
++from triangle import *
++from setmask import *
++from parameterize import *
++from setflowequation import *
++from EnumDefinitions import *
++from solve import *
++from MatlabFuncs import *
++
++md=triangle(model(),'../Exp/Square.exp',150000.)
++md=setmask(md,'all','')
++md=parameterize(md,'../Par/SquareShelf.py')
++md=setflowequation(md,'SSA','all')
++md.cluster=generic('name',oshostname(),'np',3)
++
++md.timestepping.time_step=1.
++md.settings.output_frequency=1
++md.timestepping.final_time=4.
++
++#Set up transient
++smb=numpy.ones((md.mesh.numberofvertices,1))*3.6
++smb=numpy.hstack((smb,smb*-1.))
++
++md.surfaceforcings=SMBcomponents();
++md.surfaceforcings.accumulation=numpy.vstack((smb*2, [1.5,3.]));
++md.surfaceforcings.runoff=numpy.vstack((smb/2, [1.5,3.]));
++md.surfaceforcings.evaporation=numpy.vstack((smb/2, [1.5,3.]));
++md.transient.isthermal=False
++
++md=solve(md,TransientSolutionEnum())
++
++#Fields and tolerances to track changes
++field_names=['Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', \
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', \
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', \
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4']
++field_tolerances=[1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10]
++field_values=[\
++ md.results.TransientSolution[0].Vx,\
++ md.results.TransientSolution[0].Vy,\
++ md.results.TransientSolution[0].Vel,\
++ md.results.TransientSolution[0].Pressure,\
++ md.results.TransientSolution[0].Base,\
++ md.results.TransientSolution[0].Surface,\
++ md.results.TransientSolution[0].Thickness,\
++ md.results.TransientSolution[0].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[1].Vx,\
++ md.results.TransientSolution[1].Vy,\
++ md.results.TransientSolution[1].Vel,\
++ md.results.TransientSolution[1].Pressure,\
++ md.results.TransientSolution[1].Base,\
++ md.results.TransientSolution[1].Surface,\
++ md.results.TransientSolution[1].Thickness,\
++ md.results.TransientSolution[1].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[2].Vx,\
++ md.results.TransientSolution[2].Vy,\
++ md.results.TransientSolution[2].Vel,\
++ md.results.TransientSolution[2].Pressure,\
++ md.results.TransientSolution[2].Base,\
++ md.results.TransientSolution[2].Surface,\
++ md.results.TransientSolution[2].Thickness,\
++ md.results.TransientSolution[2].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[3].Vx,\
++ md.results.TransientSolution[3].Vy,\
++ md.results.TransientSolution[3].Vel,\
++ md.results.TransientSolution[3].Pressure,\
++ md.results.TransientSolution[3].Base,\
++ md.results.TransientSolution[3].Surface,\
++ md.results.TransientSolution[3].Thickness,\
++ md.results.TransientSolution[3].SurfaceforcingsMassBalance,\
++ ]
+Index: ../trunk-jpl/test/NightlyRun/test238.py
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test238.py (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test238.py (revision 18002)
+@@ -0,0 +1,73 @@
++import numpy
++from model import *
++from triangle import *
++from setmask import *
++from parameterize import *
++from setflowequation import *
++from EnumDefinitions import *
++from solve import *
++from MatlabFuncs import *
++
++md=triangle(model(),'../Exp/Square.exp',150000.)
++md=setmask(md,'all','')
++md=parameterize(md,'../Par/SquareShelf.py')
++md=setflowequation(md,'SSA','all')
++md.cluster=generic('name',oshostname(),'np',3)
++
++md.timestepping.time_step=1.
++md.settings.output_frequency=1
++md.timestepping.final_time=4.
++md.timestepping.interp_forcings=False
++
++#Set up transient
++smb=numpy.ones((md.mesh.numberofvertices,1))*3.6
++smb=numpy.hstack((smb,smb*-1.))
++
++md.surfaceforcings.mass_balance=numpy.vstack((smb,[1.5,3.]))
++md.transient.isthermal=False
++
++md=solve(md,TransientSolutionEnum())
++
++#Fields and tolerances to track changes
++field_names=['Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', \
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', \
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', \
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4']
++field_tolerances=[1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,\
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10]
++field_values=[\
++ md.results.TransientSolution[0].Vx,\
++ md.results.TransientSolution[0].Vy,\
++ md.results.TransientSolution[0].Vel,\
++ md.results.TransientSolution[0].Pressure,\
++ md.results.TransientSolution[0].Base,\
++ md.results.TransientSolution[0].Surface,\
++ md.results.TransientSolution[0].Thickness,\
++ md.results.TransientSolution[0].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[1].Vx,\
++ md.results.TransientSolution[1].Vy,\
++ md.results.TransientSolution[1].Vel,\
++ md.results.TransientSolution[1].Pressure,\
++ md.results.TransientSolution[1].Base,\
++ md.results.TransientSolution[1].Surface,\
++ md.results.TransientSolution[1].Thickness,\
++ md.results.TransientSolution[1].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[2].Vx,\
++ md.results.TransientSolution[2].Vy,\
++ md.results.TransientSolution[2].Vel,\
++ md.results.TransientSolution[2].Pressure,\
++ md.results.TransientSolution[2].Base,\
++ md.results.TransientSolution[2].Surface,\
++ md.results.TransientSolution[2].Thickness,\
++ md.results.TransientSolution[2].SurfaceforcingsMassBalance,\
++ md.results.TransientSolution[3].Vx,\
++ md.results.TransientSolution[3].Vy,\
++ md.results.TransientSolution[3].Vel,\
++ md.results.TransientSolution[3].Pressure,\
++ md.results.TransientSolution[3].Base,\
++ md.results.TransientSolution[3].Surface,\
++ md.results.TransientSolution[3].Thickness,\
++ md.results.TransientSolution[3].SurfaceforcingsMassBalance,\
++ ]
+Index: ../trunk-jpl/test/NightlyRun/test336.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test336.m (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test336.m (revision 18002)
+@@ -0,0 +1,65 @@
++md=triangle(model(),'../Exp/Square.exp',150000.);
++md=setmask(md,'all','');
++md=parameterize(md,'../Par/SquareShelf.par');
++md=setflowequation(md,'SSA','all');
++md.cluster=generic('name',oshostname(),'np',3);
++
++md.timestepping.time_step=1.;
++md.settings.output_frequency=1;
++md.timestepping.final_time=4.;
++
++%Set up transient
++smb=ones(md.mesh.numberofvertices,1)*3.6;
++smb=[ smb smb*-1. ];
++
++md.surfaceforcings=SMBcomponents();
++md.surfaceforcings.accumulation=[smb*2; [1.5 3.]];
++md.surfaceforcings.runoff=[smb/2; [1.5 3.]];
++md.surfaceforcings.evaporation=[smb/2; [1.5 3.]];
++md.transient.isthermal=0;
++
++md=solve(md,TransientSolutionEnum());
++
++%Fields and tolerances to track changes
++field_names={'Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', ...
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', ...
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', ...
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4'};
++field_tolerances={1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10};
++field_values={...
++ (md.results.TransientSolution(1).Vx),...
++ (md.results.TransientSolution(1).Vy),...
++ (md.results.TransientSolution(1).Vel),...
++ (md.results.TransientSolution(1).Pressure),...
++ (md.results.TransientSolution(1).Base),...
++ (md.results.TransientSolution(1).Surface),...
++ (md.results.TransientSolution(1).Thickness),...
++ (md.results.TransientSolution(1).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(2).Vx),...
++ (md.results.TransientSolution(2).Vy),...
++ (md.results.TransientSolution(2).Vel),...
++ (md.results.TransientSolution(2).Pressure),...
++ (md.results.TransientSolution(2).Base),...
++ (md.results.TransientSolution(2).Surface),...
++ (md.results.TransientSolution(2).Thickness),...
++ (md.results.TransientSolution(2).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(3).Vx),...
++ (md.results.TransientSolution(3).Vy),...
++ (md.results.TransientSolution(3).Vel),...
++ (md.results.TransientSolution(3).Pressure),...
++ (md.results.TransientSolution(3).Base),...
++ (md.results.TransientSolution(3).Surface),...
++ (md.results.TransientSolution(3).Thickness),...
++ (md.results.TransientSolution(3).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(4).Vx),...
++ (md.results.TransientSolution(4).Vy),...
++ (md.results.TransientSolution(4).Vel),...
++ (md.results.TransientSolution(4).Pressure),...
++ (md.results.TransientSolution(4).Base),...
++ (md.results.TransientSolution(4).Surface),...
++ (md.results.TransientSolution(4).Thickness),...
++ (md.results.TransientSolution(4).SurfaceforcingsMassBalance),...
++ };
+Index: ../trunk-jpl/test/NightlyRun/test238.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test238.m (revision 0)
++++ ../trunk-jpl/test/NightlyRun/test238.m (revision 18002)
+@@ -0,0 +1,64 @@
++md=triangle(model(),'../Exp/Square.exp',150000.);
++md=setmask(md,'all','');
++md=parameterize(md,'../Par/SquareShelf.par');
++md=setflowequation(md,'SSA','all');
++md.cluster=generic('name',oshostname(),'np',3);
++
++md.timestepping.time_step=1.;
++md.settings.output_frequency=1;
++md.timestepping.final_time=4.;
++md.timestepping.interp_forcings=0;
++
++%Set up transient
++smb=ones(md.mesh.numberofvertices,1)*3.6;
++smb=[ smb smb*-1. ];
++
++md.surfaceforcings.mass_balance=smb;
++md.surfaceforcings.mass_balance(end+1,:)=[1.5 3.];
++md.transient.isthermal=0;
++
++md=solve(md,TransientSolutionEnum());
++
++%Fields and tolerances to track changes
++field_names={'Vx1','Vy1','Vel1','Pressure1','Bed1','Surface1','Thickness1','SurfaceforcingsMassBalance1', ...
++ 'Vx2','Vy2','Vel2','Pressure2','Bed2','Surface2','Thickness2','SurfaceforcingsMassBalance2', ...
++ 'Vx3','Vy3','Vel3','Pressure3','Bed3','Surface3','Thickness3','SurfaceforcingsMassBalance3', ...
++ 'Vx4','Vy4','Vel4','Pressure4','Bed4','Surface4','Thickness4','SurfaceforcingsMassBalance4'};
++field_tolerances={1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10,...
++ 1e-09,1e-09,1e-10,1e-10,1e-10,1e-10,1e-10,1e-10};
++field_values={...
++ (md.results.TransientSolution(1).Vx),...
++ (md.results.TransientSolution(1).Vy),...
++ (md.results.TransientSolution(1).Vel),...
++ (md.results.TransientSolution(1).Pressure),...
++ (md.results.TransientSolution(1).Base),...
++ (md.results.TransientSolution(1).Surface),...
++ (md.results.TransientSolution(1).Thickness),...
++ (md.results.TransientSolution(1).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(2).Vx),...
++ (md.results.TransientSolution(2).Vy),...
++ (md.results.TransientSolution(2).Vel),...
++ (md.results.TransientSolution(2).Pressure),...
++ (md.results.TransientSolution(2).Base),...
++ (md.results.TransientSolution(2).Surface),...
++ (md.results.TransientSolution(2).Thickness),...
++ (md.results.TransientSolution(2).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(3).Vx),...
++ (md.results.TransientSolution(3).Vy),...
++ (md.results.TransientSolution(3).Vel),...
++ (md.results.TransientSolution(3).Pressure),...
++ (md.results.TransientSolution(3).Base),...
++ (md.results.TransientSolution(3).Surface),...
++ (md.results.TransientSolution(3).Thickness),...
++ (md.results.TransientSolution(3).SurfaceforcingsMassBalance),...
++ (md.results.TransientSolution(4).Vx),...
++ (md.results.TransientSolution(4).Vy),...
++ (md.results.TransientSolution(4).Vel),...
++ (md.results.TransientSolution(4).Pressure),...
++ (md.results.TransientSolution(4).Base),...
++ (md.results.TransientSolution(4).Surface),...
++ (md.results.TransientSolution(4).Thickness),...
++ (md.results.TransientSolution(4).SurfaceforcingsMassBalance),...
++ };
Index: /issm/oecreview/Archive/17984-18295/ISSM-18002-18003.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18002-18003.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18002-18003.diff (revision 18296)
@@ -0,0 +1,450 @@
+Index: ../trunk-jpl/src/c/analyses/AdjointBalancethickness2Analysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/AdjointBalancethickness2Analysis.cpp (revision 18002)
++++ ../trunk-jpl/src/c/analyses/AdjointBalancethickness2Analysis.cpp (revision 18003)
+@@ -37,102 +37,72 @@
+ }/*}}}*/
+ ElementMatrix* AdjointBalancethickness2Analysis::CreateKMatrix(Element* element){/*{{{*/
+
+- _error_("not implemented");
+ Balancethickness2Analysis* analysis = new Balancethickness2Analysis();
+ ElementMatrix* Ke = analysis->CreateKMatrix(element);
+ delete analysis;
+
+- /*Transpose and return Ke*/
+- Ke->Transpose();
+ return Ke;
+ }/*}}}*/
+ ElementVector* AdjointBalancethickness2Analysis::CreatePVector(Element* element){/*{{{*/
+
+- _error_("not implemented");
+- /*Intermediaries*/
+- int domaintype;
+- Element* basalelement;
+-
+- /*Get basal element*/
+- element->FindParam(&domaintype,DomainTypeEnum);
+- switch(domaintype){
+- case Domain2DhorizontalEnum:
+- basalelement = element;
+- break;
+- case Domain3DEnum:
+- if(!element->IsOnBase()) return NULL;
+- basalelement = element->SpawnBasalElement();
+- break;
+- default: _error_("mesh "<GetNumberOfNodes();
++ int numnodes = element->GetNumberOfNodes();
+
+ /*Initialize Element vector and vectors*/
+- ElementVector* pe = basalelement->NewElementVector(SSAApproximationEnum);
++ ElementVector* pe = element->NewElementVector(SSAApproximationEnum);
+ IssmDouble* basis = xNew(numnodes);
+ IssmDouble* dbasis = xNew(2*numnodes);
+
+ /*Retrieve all inputs and parameters*/
+- basalelement->GetVerticesCoordinates(&xyz_list);
+- basalelement->FindParam(&num_responses,InversionNumCostFunctionsEnum);
+- basalelement->FindParam(&responses,NULL,InversionCostFunctionsEnum);
+- Input* thickness_input = basalelement->GetInput(ThicknessEnum); _assert_(thickness_input);
+- Input* thicknessobs_input = basalelement->GetInput(InversionThicknessObsEnum); _assert_(thicknessobs_input);
+- Input* weights_input = basalelement->GetInput(InversionCostFunctionsCoefficientsEnum); _assert_(weights_input);
+- Input* vx_input = basalelement->GetInput(VxEnum); _assert_(vx_input);
+- Input* vy_input = basalelement->GetInput(VyEnum); _assert_(vy_input);
++ element->GetVerticesCoordinates(&xyz_list);
++ element->FindParam(&num_responses,InversionNumCostFunctionsEnum);
++ element->FindParam(&responses,NULL,InversionCostFunctionsEnum);
++ Input* thicknessobs_input = element->GetInput(InversionThicknessObsEnum); _assert_(thicknessobs_input);
++ Input* weights_input = element->GetInput(InversionCostFunctionsCoefficientsEnum); _assert_(weights_input);
++ Input* potential_input = element->GetInput(PotentialEnum); _assert_(potential_input);
++ Input* vx_input = element->GetInput(BalancethicknessVxObsEnum); _assert_(vx_input);
++ Input* vy_input = element->GetInput(BalancethicknessVyObsEnum); _assert_(vy_input);
++ Input* nux_input = element->GetInput(BalancethicknessNuxEnum); _assert_(nux_input);
++ Input* nuy_input = element->GetInput(BalancethicknessNuyEnum); _assert_(nuy_input);
+
+ /* Start looping on the number of gaussian points: */
+- Gauss* gauss=basalelement->NewGauss(2);
++ Gauss* gauss=element->NewGauss(2);
+ for(int ig=gauss->begin();igend();ig++){
+ gauss->GaussPoint(ig);
+
+- basalelement->JacobianDeterminant(&Jdet,xyz_list,gauss);
+- basalelement->NodalFunctions(basis,gauss);
+- basalelement->NodalFunctionsDerivatives(dbasis,xyz_list,gauss);
++ element->JacobianDeterminant(&Jdet,xyz_list,gauss);
++ element->NodalFunctions(basis,gauss);
++ element->NodalFunctionsDerivatives(dbasis,xyz_list,gauss);
+
+- thickness_input->GetInputValue(&thickness, gauss);
+- thickness_input->GetInputDerivativeValue(&dH[0],xyz_list,gauss);
+- thicknessobs_input->GetInputValue(&thicknessobs, gauss);
++ vx_input->GetInputValue(&vx,gauss);
++ vy_input->GetInputValue(&vy,gauss);
++ nux_input->GetInputValue(&nux,gauss);
++ nuy_input->GetInputValue(&nuy,gauss);
++ potential_input->GetInputDerivativeValue(&dphi[0],xyz_list,gauss);
++ thicknessobs_input->GetInputValue(&hobs,gauss);
+
++ vbar2 = (nux*nux*vx*vx + nuy*nuy*vy*vy);
++ hu2 = hobs*hobs*vbar2;
++
++ NUMx = 2.*dbasis[0]*dphi[0]*(dphi[0]*dphi[0] + dphi[1]*dphi[1] - hu2);
++ NUMy = 2.*dbasis[1]*dphi[1]*(dphi[0]*dphi[0] + dphi[1]*dphi[1] - hu2);
++ DEN = vbar2*vbar2;
++
+ /*Loop over all requested responses*/
+ for(int resp=0;respGetInputValue(&weight,gauss,responses[resp]);
+
+ switch(responses[resp]){
+- case ThicknessAbsMisfitEnum:
+- for(i=0;ivalues[i]+=(thicknessobs-thickness)*weight*Jdet*gauss->weight*basis[i];
++ case Balancethickness2MisfitEnum:
++ for(i=0;ivalues[i]+=(NUMx+NUMy)/DEN *weight*Jdet*gauss->weight*basis[i];
+ break;
+- case ThicknessAbsGradientEnum:
+- for(i=0;ivalues[i]+= - weight*dH[0]*dbasis[0*numnodes+i]*Jdet*gauss->weight;
+- for(i=0;ivalues[i]+= - weight*dH[1]*dbasis[1*numnodes+i]*Jdet*gauss->weight;
+- break;
+- case ThicknessAlongGradientEnum:
+- vx_input->GetInputValue(&vx,gauss);
+- vy_input->GetInputValue(&vy,gauss);
+- vel = sqrt(vx*vx+vy*vy);
+- vx = vx/(vel+1.e-9);
+- vy = vy/(vel+1.e-9);
+- for(i=0;ivalues[i]+= - weight*(dH[0]*vx+dH[1]*vy)*(dbasis[0*numnodes+i]*vx+dbasis[1*numnodes+i]*vy)*Jdet*gauss->weight;
+- break;
+- case ThicknessAcrossGradientEnum:
+- vx_input->GetInputValue(&vx,gauss);
+- vy_input->GetInputValue(&vy,gauss);
+- vel = sqrt(vx*vx+vy*vy);
+- vx = vx/(vel+1.e-9);
+- vy = vy/(vel+1.e-9);
+- for(i=0;ivalues[i]+= - weight*(dH[0]*(-vy)+dH[1]*vx)*(dbasis[0*numnodes+i]*(-vy)+dbasis[1*numnodes+i]*vx)*Jdet*gauss->weight;
+- break;
+ default:
+ _error_("response " << EnumToStringx(responses[resp]) << " not supported yet");
+ }
+@@ -144,7 +114,6 @@
+ xDelete(xyz_list);
+ xDelete(basis);
+ xDelete(dbasis);
+- if(domaintype!=Domain2DhorizontalEnum){basalelement->DeleteMaterials(); delete basalelement;};
+ delete gauss;
+ return pe;
+ }/*}}}*/
+Index: ../trunk-jpl/src/c/analyses/Balancethickness2Analysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/Balancethickness2Analysis.cpp (revision 18002)
++++ ../trunk-jpl/src/c/analyses/Balancethickness2Analysis.cpp (revision 18003)
+@@ -182,7 +182,7 @@
+ element->JacobianDeterminantSurface(&Jdet,xyz_list_front,gauss);
+ element->NodalFunctions(basis,gauss);
+
+- for(int i=0;ivalues[i] += - Jdet*gauss->weight*thickness*(vx*normal[0] + vy*normal[1])*basis[i];
++ for(int i=0;ivalues[i] += Jdet*gauss->weight*thickness*(vx*normal[0] + vy*normal[1])*basis[i];
+ }
+
+ /*Clean up and return*/
+Index: ../trunk-jpl/src/c/modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp
+===================================================================
+--- ../trunk-jpl/src/c/modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp (revision 18002)
++++ ../trunk-jpl/src/c/modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp (revision 18003)
+@@ -11,8 +11,7 @@
+ void UpdateElementsAndMaterialsControl(Elements* elements,Materials* materials, IoModel* iomodel){
+
+ /*Intermediary*/
+- int i;
+- int counter;
++ int control;
+ Element *element = NULL;
+ Material *material = NULL;
+ int num_control_type;
+@@ -32,8 +31,8 @@
+
+ iomodel->FetchData(5,InversionControlParametersEnum,InversionCostFunctionsEnum,InversionCostFunctionsCoefficientsEnum,InversionMinParametersEnum,InversionMaxParametersEnum);
+
+- for(i=0;i(iomodel->Data(InversionControlParametersEnum)[i]);
++ for(int i=0;i(iomodel->Data(InversionControlParametersEnum)[i]);
+ switch(control){
+ /*List of supported controls*/
+ case BalancethicknessThickeningRateEnum:
+@@ -43,6 +42,7 @@
+ case FrictionCoefficientEnum:
+ case BalancethicknessNuxEnum:
+ case BalancethicknessNuyEnum:
++ case BalancethicknessApparentMassbalanceEnum:
+ iomodel->FetchData(1,control);
+ break;
+
+@@ -55,8 +55,8 @@
+ }
+
+ /*Update elements: */
+- counter=0;
+- for (i=0;inumberofelements;i++){
++ int counter=0;
++ for(int i=0;inumberofelements;i++){
+ if(iomodel->my_elements[i]){
+ element=(Element*)elements->GetObjectByOffset(counter);
+ element->InputUpdateFromIoModel(i,iomodel); //we need i to index into elements.
+@@ -65,5 +65,15 @@
+ }
+
+ /*Free data: */
+- iomodel->DeleteData(5+7,InversionControlParametersEnum,InversionCostFunctionsCoefficientsEnum,InversionCostFunctionsEnum,InversionMinParametersEnum,InversionMaxParametersEnum,BalancethicknessThickeningRateEnum,VxEnum,VyEnum,ThicknessEnum,FrictionCoefficientEnum,MaterialsRheologyBEnum,DamageDEnum);
++ for(int i=0;i(iomodel->Data(InversionControlParametersEnum)[i]);
++ switch(control){
++ case MaterialsRheologyBbarEnum: iomodel->DeleteData(1,MaterialsRheologyBEnum); break;
++ case DamageDbarEnum: iomodel->DeleteData(1,DamageDEnum); break;
++ default: iomodel->DeleteData(1,control);
++ }
++ }
++ iomodel->DeleteData(5,InversionControlParametersEnum,InversionCostFunctionsCoefficientsEnum,InversionCostFunctionsEnum,InversionMinParametersEnum,InversionMaxParametersEnum);
++
++
+ }
+Index: ../trunk-jpl/src/c/cores/control_core.cpp
+===================================================================
+--- ../trunk-jpl/src/c/cores/control_core.cpp (revision 18002)
++++ ../trunk-jpl/src/c/cores/control_core.cpp (revision 18003)
+@@ -144,18 +144,23 @@
+ femmodel->parameters->FindParam(&solution_type,SolutionTypeEnum);
+
+ /*set analysis type to compute velocity: */
+- if (solution_type==SteadystateSolutionEnum || solution_type==StressbalanceSolutionEnum){
+- femmodel->SetCurrentConfiguration(StressbalanceAnalysisEnum);
++ switch(solution_type){
++ case SteadystateSolutionEnum:
++ case StressbalanceSolutionEnum:
++ femmodel->SetCurrentConfiguration(StressbalanceAnalysisEnum);
++ break;
++ case BalancethicknessSolutionEnum:
++ femmodel->SetCurrentConfiguration(BalancethicknessAnalysisEnum);
++ break;
++ case BalancethicknessSoftSolutionEnum:
++ femmodel->SetCurrentConfiguration(BalancethicknessAnalysisEnum);
++ break;
++ case Balancethickness2SolutionEnum:
++ femmodel->SetCurrentConfiguration(Balancethickness2AnalysisEnum);
++ break;
++ default:
++ _error_("Solution " << EnumToStringx(solution_type) << " not implemented yet");
+ }
+- else if (solution_type==BalancethicknessSolutionEnum){
+- femmodel->SetCurrentConfiguration(BalancethicknessAnalysisEnum);
+- }
+- else if (solution_type==BalancethicknessSoftSolutionEnum){
+- femmodel->SetCurrentConfiguration(BalancethicknessAnalysisEnum);
+- }
+- else{
+- _error_("Solution " << EnumToStringx(solution_type) << " not implemented yet");
+- }
+
+ /*update parameter according to scalar: */ //false means: do not save control
+ InputControlUpdatex(femmodel->elements,femmodel->nodes,femmodel->vertices,femmodel->loads,femmodel->materials,femmodel->parameters,search_scalar,false);
+@@ -170,6 +175,9 @@
+ else if (solution_type==BalancethicknessSolutionEnum){
+ solutionsequence_linear(femmodel);
+ }
++ else if (solution_type==Balancethickness2SolutionEnum){
++ solutionsequence_linear(femmodel);
++ }
+ else if (solution_type==BalancethicknessSoftSolutionEnum){
+ /*Don't do anything*/
+ }
+Index: ../trunk-jpl/src/c/classes/FemModel.cpp
+===================================================================
+--- ../trunk-jpl/src/c/classes/FemModel.cpp (revision 18002)
++++ ../trunk-jpl/src/c/classes/FemModel.cpp (revision 18003)
+@@ -435,17 +435,17 @@
+ case IceVolumeEnum: this->IceVolumex(responses); break;
+ case IceVolumeAboveFloatationEnum: this->IceVolumeAboveFloatationx(responses); break;
+ case MinVelEnum: this->MinVelx(responses); break;
+- case MaxVelEnum: this->MaxVelx( responses); break;
++ case MaxVelEnum: this->MaxVelx(responses); break;
+ case MinVxEnum: this->MinVxx(responses); break;
+- case MaxVxEnum: this->MaxVxx( responses); break;
+- case MaxAbsVxEnum: this->MaxAbsVxx( responses); break;
++ case MaxVxEnum: this->MaxVxx(responses); break;
++ case MaxAbsVxEnum: this->MaxAbsVxx(responses); break;
+ case MinVyEnum: this->MinVyx(responses); break;
+- case MaxVyEnum: this->MaxVyx( responses); break;
+- case MaxAbsVyEnum: this->MaxAbsVyx( responses); break;
++ case MaxVyEnum: this->MaxVyx(responses); break;
++ case MaxAbsVyEnum: this->MaxAbsVyx(responses); break;
+ case MinVzEnum: this->MinVzx(responses); break;
+- case MaxVzEnum: this->MaxVzx( responses); break;
+- case MaxAbsVzEnum: this->MaxAbsVzx( responses); break;
+- case MassFluxEnum: this->MassFluxx( responses); break;
++ case MaxVzEnum: this->MaxVzx(responses); break;
++ case MaxAbsVzEnum: this->MaxAbsVzx(responses); break;
++ case MassFluxEnum: this->MassFluxx(responses); break;
+ case SurfaceAbsVelMisfitEnum: SurfaceAbsVelMisfitx(responses, elements,nodes, vertices, loads, materials,parameters); break;
+ case SurfaceRelVelMisfitEnum: SurfaceRelVelMisfitx(responses, elements,nodes, vertices, loads, materials,parameters); break;
+ case SurfaceLogVelMisfitEnum: SurfaceLogVelMisfitx(responses, elements,nodes, vertices, loads, materials,parameters); break;
+@@ -458,6 +458,7 @@
+ case RheologyBbarAbsGradientEnum: RheologyBbarAbsGradientx(responses, elements,nodes, vertices, loads, materials, parameters); break;
+ case DragCoefficientAbsGradientEnum:DragCoefficientAbsGradientx(responses, elements,nodes, vertices, loads, materials, parameters); break;
+ case BalancethicknessMisfitEnum: BalancethicknessMisfitx(responses); break;
++ case Balancethickness2MisfitEnum: Balancethickness2Misfitx(responses); break;
+ case TotalSmbEnum: this->TotalSmbx(responses); break;
+ case MaterialsRheologyBbarEnum: this->ElementResponsex(responses,MaterialsRheologyBbarEnum); break;
+ case VelEnum: this->ElementResponsex(responses,VelEnum); break;
+@@ -1199,6 +1200,61 @@
+ *presponse=J;
+
+ }/*}}}*/
++void FemModel::Balancethickness2Misfitx(IssmDouble* presponse){/*{{{*/
++
++ /*output: */
++ IssmDouble J=0.;
++ IssmDouble J_sum;
++
++ IssmDouble weight,thicknessobs,thickness;
++ IssmDouble Jdet;
++ IssmDouble* xyz_list = NULL;
++
++ /*Compute Misfit: */
++ for(int i=0;iSize();i++){
++ Element* element=dynamic_cast(elements->GetObjectByOffset(i));
++
++ /*If on water, return 0: */
++ if(!element->IsIceInElement()) continue;
++
++ /* Get node coordinates*/
++ element->GetVerticesCoordinates(&xyz_list);
++ Input* weights_input =element->GetInput(InversionCostFunctionsCoefficientsEnum); _assert_(weights_input);
++ Input* thickness_input =element->GetInput(ThicknessEnum); _assert_(thickness_input);
++ Input* thicknessobs_input=element->GetInput(InversionThicknessObsEnum); _assert_(thicknessobs_input);
++
++ /* Start looping on the number of gaussian points: */
++ Gauss* gauss=element->NewGauss(2);
++ for(int ig=gauss->begin();igend();ig++){
++
++ gauss->GaussPoint(ig);
++
++ /* Get Jacobian determinant: */
++ element->JacobianDeterminant(&Jdet,xyz_list,gauss);
++
++ /*Get all parameters at gaussian point*/
++ weights_input->GetInputValue(&weight,gauss,Balancethickness2MisfitEnum);
++ thickness_input->GetInputValue(&thickness,gauss);
++ thicknessobs_input->GetInputValue(&thicknessobs,gauss);
++ gauss->GaussPoint(ig);
++
++ J +=0.5*(thickness*thickness - thicknessobs*thicknessobs)*weight*Jdet*gauss->weight;
++ }
++
++ /*clean up and Return: */
++ xDelete(xyz_list);
++ delete gauss;
++ }
++
++ /*Sum all J from all cpus of the cluster:*/
++ ISSM_MPI_Reduce (&J,&J_sum,1,ISSM_MPI_DOUBLE,ISSM_MPI_SUM,0,IssmComm::GetComm() );
++ ISSM_MPI_Bcast(&J_sum,1,ISSM_MPI_DOUBLE,0,IssmComm::GetComm());
++ J=J_sum;
++
++ /*Assign output pointers: */
++ *presponse=J;
++
++}/*}}}*/
+ void FemModel::ThicknessAbsGradientx( IssmDouble* pJ){/*{{{*/
+
+ /*output: */
+Index: ../trunk-jpl/src/c/classes/Elements/Tria.cpp
+===================================================================
+--- ../trunk-jpl/src/c/classes/Elements/Tria.cpp (revision 18002)
++++ ../trunk-jpl/src/c/classes/Elements/Tria.cpp (revision 18003)
+@@ -990,6 +990,7 @@
+ switch(control){
+ /*yts conversion*/
+ case BalancethicknessThickeningRateEnum:
++ case BalancethicknessApparentMassbalanceEnum:
+ case VxEnum:
+ case VyEnum:
+ if(iomodel->Data(control)){
+@@ -2802,8 +2803,11 @@
+ case ThicknessEnum:
+ GradjThicknessBalancethicknessSoft(gradient,control_index);
+ break;
++ case BalancethicknessApparentMassbalanceEnum:
++ GradjAdotBulancethickness2(gradient,control_index);
++ break;
+ default:
+- _error_("control type not supported yet: " << control_type);
++ _error_("control type not supported yet: " << EnumToStringx(control_type));
+ }
+
+ /*Now deal with ∂J/∂alpha*/
+@@ -2820,6 +2824,7 @@
+ case ThicknessAlongGradientEnum:
+ case ThicknessAcrossGradientEnum:
+ case BalancethicknessMisfitEnum:
++ case Balancethickness2MisfitEnum:
+ case SurfaceAbsVelMisfitEnum:
+ case SurfaceRelVelMisfitEnum:
+ case SurfaceLogVelMisfitEnum:
+@@ -3167,6 +3172,21 @@
+ gradient->SetValues(NUMVERTICES,vertexpidlist,gradient_g,INS_VAL);
+ }
+ /*}}}*/
++void Tria::GradjAdotBulancethickness2(Vector* gradient,int control_index){/*{{{*/
++
++ /*Intermediaries*/
++ int vertexpidlist[NUMVERTICES];
++ IssmDouble lambda[NUMVERTICES];
++ IssmDouble gradient_g[NUMVERTICES];
++
++ /*Compute Gradient*/
++ GradientIndexing(&vertexpidlist[0],control_index);
++ GetInputListOnVertices(&lambda[0],AdjointEnum);
++ for(int i=0;iSetValues(NUMVERTICES,vertexpidlist,gradient_g,INS_VAL);
++}
++/*}}}*/
+ void Tria::GradjVxBalancedthickness(Vector* gradient,int control_index){/*{{{*/
+
+ /*Intermediaries*/
+Index: ../trunk-jpl/src/c/classes/Elements/Tria.h
+===================================================================
+--- ../trunk-jpl/src/c/classes/Elements/Tria.h (revision 18002)
++++ ../trunk-jpl/src/c/classes/Elements/Tria.h (revision 18003)
+@@ -148,6 +148,7 @@
+ void GradjVxBalancedthickness(Vector* gradient,int control_index);
+ void GradjVyBalancedthickness(Vector* gradient,int control_index);
+ void GradjThicknessBalancethicknessSoft(Vector* gradient,int control_index);
++ void GradjAdotBulancethickness2(Vector* gradient,int control_index);
+ void GetVectorFromControlInputs(Vector* gradient,int control_enum,int control_index,const char* data);
+ void SetControlInputsFromVector(IssmDouble* vector,int control_enum,int control_index);
+ void ControlInputGetGradient(Vector* gradient,int enum_type,int control_index);
+Index: ../trunk-jpl/src/c/classes/FemModel.h
+===================================================================
+--- ../trunk-jpl/src/c/classes/FemModel.h (revision 18002)
++++ ../trunk-jpl/src/c/classes/FemModel.h (revision 18003)
+@@ -76,6 +76,7 @@
+ void IceVolumeAboveFloatationx(IssmDouble* pV);
+ void ElementResponsex(IssmDouble* presponse,int response_enum);
+ void BalancethicknessMisfitx(IssmDouble* pV);
++ void Balancethickness2Misfitx(IssmDouble* pV);
+ #ifdef _HAVE_DAKOTA_
+ void DakotaResponsesx(double* d_responses,char** responses_descriptors,int numresponsedescriptors,int d_numresponses);
+ #endif
Index: /issm/oecreview/Archive/17984-18295/ISSM-18005-18006.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18005-18006.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18005-18006.diff (revision 18296)
@@ -0,0 +1,13 @@
+Index: ../trunk-jpl/src/m/classes/model.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/model.py (revision 18005)
++++ ../trunk-jpl/src/m/classes/model.py (revision 18006)
+@@ -10,6 +10,8 @@
+ from SMB import SMB
+ from SMBpdd import SMBpdd
+ from SMBgradients import SMBgradients
++from SMBcomponents import SMBcomponents
++from SMBmeltcomponents import SMBmeltcomponents
+ from basalforcings import basalforcings
+ from matice import matice
+ from damage import damage
Index: /issm/oecreview/Archive/17984-18295/ISSM-18006-18007.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18006-18007.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18006-18007.diff (revision 18296)
@@ -0,0 +1,26 @@
+Index: ../trunk-jpl/src/m/classes/SMBcomponents.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/SMBcomponents.py (revision 18006)
++++ ../trunk-jpl/src/m/classes/SMBcomponents.py (revision 18007)
+@@ -73,7 +73,7 @@
+
+ yts=365.0*24.0*3600.0
+
+- WriteData(fid,'enum',SurfaceforcingsEnum(),'data',SMBEnum(),'format','Integer');
++ WriteData(fid,'enum',SurfaceforcingsEnum(),'data',SMBcomponentsEnum(),'format','Integer');
+ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','accumulation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
+ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','runoff','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
+ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','evaporation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
+Index: ../trunk-jpl/src/m/classes/SMBmeltcomponents.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/SMBmeltcomponents.py (revision 18006)
++++ ../trunk-jpl/src/m/classes/SMBmeltcomponents.py (revision 18007)
+@@ -85,7 +85,7 @@
+
+ yts=365.0*24.0*3600.0
+
+- WriteData(fid,'enum',SurfaceforcingsEnum(),'data',SMBEnum(),'format','Integer');
++ WriteData(fid,'enum',SurfaceforcingsEnum(),'data',SMBmeltcomponentsEnum(),'format','Integer');
+ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','accumulation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
+ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','evaporation','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
+ WriteData(fid,'object',self,'class','surfaceforcings','fieldname','melt','format','DoubleMat','mattype',1,'scale',1./yts,'forcinglength',md.mesh.numberofvertices+1)
Index: /issm/oecreview/Archive/17984-18295/ISSM-18007-18008.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18007-18008.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18007-18008.diff (revision 18296)
@@ -0,0 +1,145 @@
+Index: ../trunk-jpl/src/m/classes/inversionvalidation.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/inversionvalidation.m (revision 0)
++++ ../trunk-jpl/src/m/classes/inversionvalidation.m (revision 18008)
+@@ -0,0 +1,140 @@
++%INVERSIONVALIDATION class definition
++%
++% Usage:
++% inversionvalidation=inversionvalidation();
++
++classdef inversionvalidation
++ properties (SetAccess=public)
++ iscontrol = 0
++ incomplete_adjoint = 0
++ control_parameters = NaN
++ cost_functions = NaN
++ cost_functions_coefficients = NaN
++ min_parameters = NaN
++ max_parameters = NaN
++ vx_obs = NaN
++ vy_obs = NaN
++ vz_obs = NaN
++ vel_obs = NaN
++ thickness_obs = NaN
++ end
++ methods
++ function obj = inversionvalidation(varargin) % {{{
++ switch nargin
++ case 0
++ obj=setdefaultparameters(obj);
++ case 1
++ obj=structtoobj(inversionvalidation(),varargin{1});
++ otherwise
++ error('constructor not supported');
++ end
++ end % }}}
++ function self = setdefaultparameters(self) % {{{
++
++ %default is incomplete adjoint for now
++ self.incomplete_adjoint=1;
++
++ %parameter to be inferred by control methods (only
++ %drag and B are supported yet)
++ self.control_parameters={'FrictionCoefficient'};
++
++ %several responses can be used:
++ self.cost_functions=101;
++ end % }}}
++ function md = checkconsistency(obj,md,solution,analyses) % {{{
++
++ %Early return
++ if ~obj.iscontrol, return; end
++
++ num_controls=numel(md.inversion.control_parameters);
++ num_costfunc=size(md.inversion.cost_functions,2);
++
++ md = checkfield(md,'fieldname','inversion.iscontrol','values',[0 1]);
++ md = checkfield(md,'fieldname','inversion.incomplete_adjoint','values',[0 1]);
++ md = checkfield(md,'fieldname','inversion.control_parameters','cell',1,'values',...
++ {'BalancethicknessThickeningRate' 'FrictionCoefficient' 'MaterialsRheologyBbar' 'MaterialsRheologyZbar' 'Vx' 'Vy' 'Thickness'});
++ md = checkfield(md,'fieldname','inversion.cost_functions','size',[1 num_costfunc],'values',[101:105 201 501:506]);
++ md = checkfield(md,'fieldname','inversion.cost_functions_coefficients','size',[md.mesh.numberofvertices num_costfunc],'>=',0);
++ md = checkfield(md,'fieldname','inversion.min_parameters','size',[md.mesh.numberofvertices num_controls]);
++ md = checkfield(md,'fieldname','inversion.max_parameters','size',[md.mesh.numberofvertices num_controls]);
++
++ if solution==BalancethicknessSolutionEnum()
++ md = checkfield(md,'fieldname','inversion.thickness_obs','size',[md.mesh.numberofvertices 1],'NaN',1);
++ elseif solution==BalancethicknessSoftSolutionEnum()
++ md = checkfield(md,'fieldname','inversion.thickness_obs','size',[md.mesh.numberofvertices 1],'NaN',1);
++ else
++ md = checkfield(md,'fieldname','inversion.vx_obs','size',[md.mesh.numberofvertices 1],'NaN',1);
++ if ~strcmp(domaintype(md.mesh),'2Dvertical'),
++ md = checkfield(md,'fieldname','inversion.vy_obs','size',[md.mesh.numberofvertices 1],'NaN',1);
++ end
++ end
++ end % }}}
++ function disp(obj) % {{{
++ disp(sprintf(' inversionvalidation parameters:'));
++ fielddisplay(obj,'iscontrol','is inversion activated?');
++ fielddisplay(obj,'incomplete_adjoint','1: linear viscosity, 0: non-linear viscosity');
++ fielddisplay(obj,'control_parameters','ex: {''FrictionCoefficient''}, or {''MaterialsRheologyBbar''}');
++ fielddisplay(obj,'cost_functions','indicate the type of response for each optimization step');
++ fielddisplay(obj,'cost_functions_coefficients','cost_functions_coefficients applied to the misfit of each vertex and for each control_parameter');
++ fielddisplay(obj,'min_parameters','absolute minimum acceptable value of the inversed parameter on each vertex');
++ fielddisplay(obj,'max_parameters','absolute maximum acceptable value of the inversed parameter on each vertex');
++ fielddisplay(obj,'vx_obs','observed velocity x component [m/yr]');
++ fielddisplay(obj,'vy_obs','observed velocity y component [m/yr]');
++ fielddisplay(obj,'vel_obs','observed velocity magnitude [m/yr]');
++ fielddisplay(obj,'thickness_obs','observed thickness [m]');
++ disp('Available cost functions:');
++ disp(' 101: SurfaceAbsVelMisfit');
++ disp(' 102: SurfaceRelVelMisfit');
++ disp(' 103: SurfaceLogVelMisfit');
++ disp(' 104: SurfaceLogVxVyMisfit');
++ disp(' 105: SurfaceAverageVelMisfit');
++ disp(' 201: ThicknessAbsMisfit');
++ disp(' 501: DragCoefficientAbsGradient');
++ disp(' 502: RheologyBbarAbsGradient');
++ disp(' 503: ThicknessAbsGradient');
++ end % }}}
++ function marshall(obj,md,fid) % {{{
++
++ yts=365.0*24.0*3600.0;
++
++ WriteData(fid,'object',obj,'class','inversion','fieldname','iscontrol','format','Boolean');
++ WriteData(fid,'enum',InversionTypeEnum(),'data',3,'format','Integer');
++ if ~obj.iscontrol, return; end
++ WriteData(fid,'object',obj,'class','inversion','fieldname','incomplete_adjoint','format','Boolean');
++ WriteData(fid,'object',obj,'class','inversion','fieldname','cost_functions_coefficients','format','DoubleMat','mattype',1);
++ WriteData(fid,'object',obj,'class','inversion','fieldname','min_parameters','format','DoubleMat','mattype',3);
++ WriteData(fid,'object',obj,'class','inversion','fieldname','max_parameters','format','DoubleMat','mattype',3);
++ WriteData(fid,'object',obj,'class','inversion','fieldname','vx_obs','format','DoubleMat','mattype',1,'scale',1./yts);
++ WriteData(fid,'object',obj,'class','inversion','fieldname','vy_obs','format','DoubleMat','mattype',1,'scale',1./yts);
++ WriteData(fid,'object',obj,'class','inversion','fieldname','vz_obs','format','DoubleMat','mattype',1,'scale',1./yts);
++ WriteData(fid,'object',obj,'class','inversion','fieldname','thickness_obs','format','DoubleMat','mattype',1);
++
++ %process control parameters
++ num_control_parameters=numel(obj.control_parameters);
++ data=zeros(1,num_control_parameters);
++ for i=1:num_control_parameters,
++ data(i)=StringToEnum(obj.control_parameters{i});
++ end
++ WriteData(fid,'data',data,'enum',InversionControlParametersEnum(),'format','DoubleMat','mattype',3);
++ WriteData(fid,'data',num_control_parameters,'enum',InversionNumControlParametersEnum(),'format','Integer');
++
++ %process cost functions
++ num_cost_functions=size(obj.cost_functions,2);
++ data=obj.cost_functions;
++ pos=find(obj.cost_functions==101); data(pos)=SurfaceAbsVelMisfitEnum();
++ pos=find(obj.cost_functions==102); data(pos)=SurfaceRelVelMisfitEnum();
++ pos=find(obj.cost_functions==103); data(pos)=SurfaceLogVelMisfitEnum();
++ pos=find(obj.cost_functions==104); data(pos)=SurfaceLogVxVyMisfitEnum();
++ pos=find(obj.cost_functions==105); data(pos)=SurfaceAverageVelMisfitEnum();
++ pos=find(obj.cost_functions==201); data(pos)=ThicknessAbsMisfitEnum();
++ pos=find(obj.cost_functions==501); data(pos)=DragCoefficientAbsGradientEnum();
++ pos=find(obj.cost_functions==502); data(pos)=RheologyBbarAbsGradientEnum();
++ pos=find(obj.cost_functions==503); data(pos)=ThicknessAbsGradientEnum();
++ pos=find(obj.cost_functions==504); data(pos)=ThicknessAlongGradientEnum();
++ pos=find(obj.cost_functions==505); data(pos)=ThicknessAcrossGradientEnum();
++ pos=find(obj.cost_functions==506); data(pos)=BalancethicknessMisfitEnum();
++ WriteData(fid,'data',data,'enum',InversionCostFunctionsEnum(),'format','DoubleMat','mattype',3);
++ WriteData(fid,'data',num_cost_functions,'enum',InversionNumCostFunctionsEnum(),'format','Integer');
++ end % }}}
++ end
++end
Index: /issm/oecreview/Archive/17984-18295/ISSM-18008-18009.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18008-18009.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18008-18009.diff (revision 18296)
@@ -0,0 +1,131 @@
+Index: ../trunk-jpl/src/c/modules/ModelProcessorx/Control/CreateParametersControl.cpp
+===================================================================
+--- ../trunk-jpl/src/c/modules/ModelProcessorx/Control/CreateParametersControl.cpp (revision 18008)
++++ ../trunk-jpl/src/c/modules/ModelProcessorx/Control/CreateParametersControl.cpp (revision 18009)
+@@ -73,6 +73,8 @@
+ parameters->AddObject(iomodel->CopyConstantObject(InversionMaxstepsEnum));
+ parameters->AddObject(iomodel->CopyConstantObject(InversionMaxiterEnum));
+ break;
++ case 3:/*Validation*/
++ break;
+ default:
+ _error_("not supported");
+
+Index: ../trunk-jpl/src/c/Makefile.am
+===================================================================
+--- ../trunk-jpl/src/c/Makefile.am (revision 18008)
++++ ../trunk-jpl/src/c/Makefile.am (revision 18009)
+@@ -417,6 +417,7 @@
+ ./cores/control_core.cpp\
+ ./cores/controltao_core.cpp\
+ ./cores/controlm1qn3_core.cpp\
++ ./cores/controlvalidation_core.cpp\
+ ./cores/gradient_core.cpp\
+ ./cores/adjointstressbalance_core.cpp\
+ ./cores/adjointbalancethickness_core.cpp\
+Index: ../trunk-jpl/src/c/cores/WrapperCorePointerFromSolutionEnum.cpp
+===================================================================
+--- ../trunk-jpl/src/c/cores/WrapperCorePointerFromSolutionEnum.cpp (revision 18008)
++++ ../trunk-jpl/src/c/cores/WrapperCorePointerFromSolutionEnum.cpp (revision 18009)
+@@ -45,6 +45,7 @@
+ case 0: solutioncore=control_core; break;
+ case 1: solutioncore=controltao_core; break;
+ case 2: solutioncore=controlm1qn3_core; break;
++ case 3: solutioncore=controlvalidation_core; break;
+ default: _error_("control type not supported");
+ }
+ }
+Index: ../trunk-jpl/src/c/cores/controlvalidation_core.cpp
+===================================================================
+--- ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 0)
++++ ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18009)
+@@ -0,0 +1,77 @@
++/*!\file: controlvalidation_core.cpp
++ * \brief: core of the control solution
++ */
++
++#include "./cores.h"
++#include "../toolkits/toolkits.h"
++#include "../classes/classes.h"
++#include "../shared/shared.h"
++#include "../modules/modules.h"
++
++void controlvalidation_core(FemModel* femmodel){
++
++ int solution_type,n;
++ IssmDouble j0,j;
++ IssmDouble Ialpha,alpha;
++ IssmDouble *G = NULL;
++ IssmDouble *X = NULL;
++ IssmDouble *X0= NULL;
++
++ /*Solution and Adjoint core pointer*/
++ void (*solutioncore)(FemModel*) = NULL;
++ void (*adjointcore)(FemModel*) = NULL;
++
++ /*Recover parameters used throughout the solution*/
++ femmodel->parameters->FindParam(&solution_type,SolutionTypeEnum);
++ femmodel->parameters->SetParam(false,SaveResultsEnum);
++
++ /*Get initial guess*/
++ Vector *Xpetsc = NULL;
++ GetVectorFromControlInputsx(&Xpetsc,femmodel->elements,femmodel->nodes,femmodel->vertices,femmodel->loads,femmodel->materials,femmodel->parameters,"value");
++ Xpetsc->GetSize(&n);
++ X0 = Xpetsc->ToMPISerial();
++ delete Xpetsc;
++
++ /*Allocate Gradient and current vector*/
++ G = xNew(n);
++ X = xNew(n);
++
++ /*out of solution_type, figure out solution core and adjoint function pointer*/
++ CorePointerFromSolutionEnum(&solutioncore,femmodel->parameters,solution_type);
++ AdjointCorePointerFromSolutionEnum(&adjointcore,solution_type);
++
++ if(VerboseControl()) _printf0_(" Compute Initial solution\n");
++ solutioncore(femmodel);
++ if(VerboseControl()) _printf0_(" Compute Adjoint\n");
++ adjointcore(femmodel);
++ if(VerboseControl()) _printf0_(" Compute Initial cost function\n");
++ femmodel->CostFunctionx(&j0,NULL,NULL);
++ if(VerboseControl()) _printf0_(" Compute Gradient\n");
++ Gradjx(&G,NULL,femmodel->elements,femmodel->nodes,femmodel->vertices,femmodel->loads,femmodel->materials,femmodel->parameters);
++ for(int i=0;i -4. ; exponent-=0.2){
++ //for(IssmDouble exponent = -1.; exponent > -9. ; exponent-=0.2){
++
++ alpha = pow(10.,exponent);
++
++ /*Create new vector*/
++ for(int i=0;ielements,femmodel->nodes,femmodel->vertices,femmodel->loads,femmodel->materials,femmodel->parameters,X);
++ solutioncore(femmodel);
++ femmodel->CostFunctionx(&j,NULL,NULL);
++
++ IssmDouble Den = 0.;
++ for(int i=0;i(G);
++}
+Index: ../trunk-jpl/src/c/cores/cores.h
+===================================================================
+--- ../trunk-jpl/src/c/cores/cores.h (revision 18008)
++++ ../trunk-jpl/src/c/cores/cores.h (revision 18009)
+@@ -29,6 +29,7 @@
+ void control_core(FemModel* femmodel);
+ void controltao_core(FemModel* femmodel);
+ void controlm1qn3_core(FemModel* femmodel);
++void controlvalidation_core(FemModel* femmodel);
+ void masstransport_core(FemModel* femmodel);
+ void depthaverage_core(FemModel* femmodel);
+ void extrudefrombase_core(FemModel* femmodel);
Index: /issm/oecreview/Archive/17984-18295/ISSM-18009-18010.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18009-18010.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18009-18010.diff (revision 18296)
@@ -0,0 +1,60 @@
+Index: ../trunk-jpl/src/c/cores/controlvalidation_core.cpp
+===================================================================
+--- ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18009)
++++ ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18010)
+@@ -12,7 +12,7 @@
+
+ int solution_type,n;
+ IssmDouble j0,j;
+- IssmDouble Ialpha,alpha;
++ IssmDouble Ialpha,exponent,alpha;
+ IssmDouble *G = NULL;
+ IssmDouble *X = NULL;
+ IssmDouble *X0= NULL;
+@@ -50,12 +50,24 @@
+ Gradjx(&G,NULL,femmodel->elements,femmodel->nodes,femmodel->vertices,femmodel->loads,femmodel->materials,femmodel->parameters);
+ for(int i=0;i -4. ; exponent-=0.2){
+- //for(IssmDouble exponent = -1.; exponent > -9. ; exponent-=0.2){
++ /*Range of tests*/
++ IssmDouble exp0 = 0.;
++ IssmDouble incr = -0.2;
++ IssmDouble exp1 = -8.;
++ int num = int((exp1-exp0)/incr);
+
+- alpha = pow(10.,exponent);
++ /*Allocate output*/
++ IssmDouble* output = xNew(2*num);
+
++ /*Start loop*/
++ _printf0_(" alpha Ialpha \n");
++ _printf0_("_________________________\n");
++ for(int m=0;mresults->AddObject(new GenericExternalResult(femmodel->results->Size()+1,JEnum,output,num,2,1,0));
++
+ /*Clean up and return*/
+ xDelete(G);
+ }
Index: /issm/oecreview/Archive/17984-18295/ISSM-18010-18011.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18010-18011.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18010-18011.diff (revision 18296)
@@ -0,0 +1,181 @@
+Index: ../trunk-jpl/src/m/mech/backstressfrominversion.m
+===================================================================
+--- ../trunk-jpl/src/m/mech/backstressfrominversion.m (revision 18010)
++++ ../trunk-jpl/src/m/mech/backstressfrominversion.m (revision 18011)
+@@ -22,9 +22,8 @@
+ % 'xy': x and y axes same as in polar stereographic projection
+ %
+ % Return values:
+-% 'backstress' is the inferred backstress necessary to balance the
+-% analytical solution (keeping damage within its appropriate limits, e.g. D
+-% in [0,1]).
++% 'backstress' is the inferred backstress based on the analytical
++% solution for ice shelf creep
+ %
+ % Usage:
+ % backstress=backstressfrominversion(md,options)
+Index: ../trunk-jpl/src/m/mech/calcbackstress.m
+===================================================================
+--- ../trunk-jpl/src/m/mech/calcbackstress.m (revision 0)
++++ ../trunk-jpl/src/m/mech/calcbackstress.m (revision 18011)
+@@ -0,0 +1,64 @@
++function backstress=calcbackstress(md,varargin)
++%BACKSTRESSFROMINVERSION - compute ice shelf backstress
++%
++% This routine computes backstress based on the analytical formalism of
++% Thomas (1973) and Borstad et al. (2013) based on the ice rigidity,
++% thickness, the densities of ice and seawater, and (optionally)
++% damage. Strain rates must also be included, either from observed or
++% modeled velocities.
++
++% Available options:
++% - 'smoothing' : the amount of smoothing to be applied to the strain rate data.
++% Type 'help averaging' for more information on its
++% usage. Defaults to 0.
++% - 'coordsys' : coordinate system for calculating the strain rate
++% components. Must be one of:
++% 'longitudinal': x axis aligned along a flowline at every point (default)
++% 'principal': x axis aligned along maximum principal strain rate
++% at every point
++% 'xy': x and y axes same as in polar stereographic projection
++%
++% Return values:
++% 'backstress' is the inferred backstress based on the analytical
++% solution for ice shelf creep
++%
++% Usage:
++% backstress=calcbackstress(md,options)
++%
++% Example:
++% backstress=backstressfrominversion(md,'smoothing',2,'coordsys','longitudinal');
++
++% check inputs
++if (nargin<1),
++ help backstressfrominversion
++ error('bad usage');
++end
++if isempty(fieldnames(md.results)),
++ error(['md.results.strainrate is not present. Calculate using md=mechanicalproperties(md,vx,vy)']);
++end
++if dimension(md.mesh)~=2,
++ error('only 2d model supported currently');
++end
++if any(md.flowequation.element_equation~=2),
++ disp('Warning: the model has some non SSA elements. These will be treated like SSA elements');
++end
++
++% process options
++options = pairoptions(varargin{:});
++smoothing = getfieldvalue(options,'smoothing',0);
++coordsys = getfieldvalue(options,'coordsys','longitudinal');
++tempmask = getfieldvalue(options,'tempmask',false);
++
++T=0.5*md.materials.rho_ice*md.constants.g*(1-md.materials.rho_ice/md.materials.rho_water)*md.geometry.thickness;
++n=averaging(md,md.materials.rheology_n,0);
++B=md.materials.rheology_B;
++if md.damage.isdamage,
++ D=md.damage.D
++else
++ D=0.
++
++[a0,b0,theta0,ex0]=thomasparams(md,'eq','Thomas','smoothing',smoothing,'coordsys',coordsys);
++
++% analytical backstress solution
++backstress=T-(1.-D).*B.*sign(ex0).*(2+a0).*abs(ex0).^(1./n)./((1+a0+a0.^2+b0.^2).^((n-1)/2./n));
++backstress(find(backstress<0))=0;
+Index: ../trunk-jpl/src/m/mech/backstressfrominversion.py
+===================================================================
+--- ../trunk-jpl/src/m/mech/backstressfrominversion.py (revision 18010)
++++ ../trunk-jpl/src/m/mech/backstressfrominversion.py (revision 18011)
+@@ -7,7 +7,7 @@
+ Compute ice shelf backstress from inversion results.
+
+ This routine computes backstress based on the analytical formalism of
+- Thomas (1973) and Borstad et al. (2013, The Cryoshpere). The model
++ Thomas (1973) and Borstad et al. (2013, The Cryosphere). The model
+ must contain inversion results for ice rigidity. Strain rates must
+ also be included, either from observed or modeled velocities. Ice
+ rigidity B is assumed to be parameterized by the ice temperature in
+@@ -28,9 +28,8 @@
+ 'xy': x and y axes same as in polar stereographic projection
+
+ Return values:
+- 'backstress' is the inferred backstress necessary to balance the
+- analytical solution (keeping damage within its appropriate limits, e.g. D
+- in [0,1]).
++ 'backstress' is the inferred backstress based on the analytical
++ solution for ice shelf creep
+
+ Usage:
+ backstress=backstressfrominversion(md,options)
+Index: ../trunk-jpl/src/m/mech/calcbackstress.py
+===================================================================
+--- ../trunk-jpl/src/m/mech/calcbackstress.py (revision 0)
++++ ../trunk-jpl/src/m/mech/calcbackstress.py (revision 18011)
+@@ -0,0 +1,66 @@
++import numpy as npy
++from averaging import averaging
++from thomasparams import thomasparams
++
++def calcbackstress(md,**kwargs):
++ '''
++ Compute ice shelf backstress.
++
++ This routine computes backstress based on the analytical formalism of
++ Thomas (1973) and Borstad et al. (2013, The Cryosphere) based on the
++ ice rigidity, thickness, the densities of ice and seawater, and
++ (optionally) damage. Strain rates must also be included, either from
++ observed or modeled velocities.
++
++ Available options:
++ - 'smoothing' : the amount of smoothing to be applied to the strain rate data.
++ Type 'help averaging' for more information on its
++ usage. Defaults to 0.
++ - 'coordsys' : coordinate system for calculating the strain rate
++ components. Must be one of:
++ 'longitudinal': x axis aligned along a flowline at every point (default)
++ 'principal': x axis aligned along maximum principal strain rate
++ at every point
++ 'xy': x and y axes same as in polar stereographic projection
++
++ Return values:
++ 'backstress' is the inferred backstress based on the analytical
++ solution for ice shelf creep
++
++ Usage:
++ backstress=calcbackstress(md,options)
++
++ Example:
++ backstress=calcbackstress(md,'smoothing',2,'coordsys','longitudinal')
++ '''
++
++ # unpack kwargs
++ smoothing=kwargs.pop('smoothing',0)
++ if 'smoothing' in kwargs: del kwargs['smoothing']
++ coordsys=kwargs.pop('coordsys','longitudinal')
++ if 'coordsys' in kwargs: del kwargs['coordsys']
++ assert len(kwargs)==0, 'error, unexpected or misspelled kwargs'
++
++ # some checks
++ if not hasattr(md.results,'strainrate'):
++ raise StandardError('md.results.strainrate not present. Calculate using md=mechanicalproperties(md,vx,vy)')
++ if not '2d' in md.mesh.__doc__:
++ raise StandardError('only 2d (planview) model supported currently')
++ if any(md.flowequation.element_equation!=2):
++ raise StandardError('Warning: the model has some non-SSA elements. These will be treated like SSA elements')
++
++ T=0.5*md.materials.rho_ice*md.constants.g*(1-md.materials.rho_ice/md.materials.rho_water)*md.geometry.thickness
++ n=averaging(md,md.materials.rheology_n,0)
++ B=md.materials.rheology_B
++ if md.damage.isdamage:
++ D=md.damage.D
++ else:
++ D=0.
++
++ a0,b0,theta0,ex0=thomasparams(md,eq='Thomas',smoothing=smoothing,coordsys=coordsys)
++
++ # analytical backstress solution
++ backstress=T-(1.-D)*B*npy.sign(ex0)*(2+a0)*npy.abs(ex0)**(1./n)/((1+a0+a0**2+b0**2)**((n-1.)/2./n))
++ backstress[npy.nonzero(backstress<0)]=0
++
++ return backstress
Index: /issm/oecreview/Archive/17984-18295/ISSM-18011-18012.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18011-18012.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18011-18012.diff (revision 18296)
@@ -0,0 +1,39 @@
+Index: ../trunk-jpl/src/m/plot/checkplotoptions.py
+===================================================================
+--- ../trunk-jpl/src/m/plot/checkplotoptions.py (revision 18011)
++++ ../trunk-jpl/src/m/plot/checkplotoptions.py (revision 18012)
+@@ -17,7 +17,7 @@
+ if options.exist('unit'):
+ if 'km' in options.getfieldvalue('unit','km'):
+ options.changefieldvalue('unit',10**-3)
+- if '100km' in options.getfieldvalue('unit','100km'):
++ elif '100km' in options.getfieldvalue('unit','100km'):
+ options.changefieldvalue('unit',10**-5)
+
+ #density
+Index: ../trunk-jpl/src/m/plot/applyoptions.py
+===================================================================
+--- ../trunk-jpl/src/m/plot/applyoptions.py (revision 18011)
++++ ../trunk-jpl/src/m/plot/applyoptions.py (revision 18012)
+@@ -218,11 +218,12 @@
+ elif cbar_extend==3:
+ extend='both'
+ cb = mpl.colorbar.ColorbarBase(ax.cax, cmap=cmap, norm=norm, extend=extend)
+- cb.locator=MaxNLocator(nbins=5) # default 5 ticks
+ if options.exist('alpha'):
+ cb.set_alpha(options.getfieldvalue('alpha'))
+ if options.exist('colorbarnumticks'):
+ cb.locator=MaxNLocator(nbins=options.getfieldvalue('colorbarnumticks',5))
++ else:
++ cb.locator=MaxNLocator(nbins=5) # default 5 ticks
+ if options.exist('colorbartickspacing'):
+ locs=npy.arange(lims[0],lims[1]+1,options.getfieldvalue('colorbartickspacing'))
+ cb.set_ticks(locs)
+@@ -236,6 +237,7 @@
+ else:
+ cb.set_label(options.getfieldvalue('colorbartitle'),fontsize=fontsize)
+ cb.ax.tick_params(labelsize=fontsize)
++ cb.update_ticks()
+ plt.sca(ax) # return to original axes control
+ #}}}
+
Index: /issm/oecreview/Archive/17984-18295/ISSM-18024-18025.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18024-18025.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18024-18025.diff (revision 18296)
@@ -0,0 +1,12 @@
+Index: ../trunk-jpl/src/c/classes/FemModel.cpp
+===================================================================
+--- ../trunk-jpl/src/c/classes/FemModel.cpp (revision 18024)
++++ ../trunk-jpl/src/c/classes/FemModel.cpp (revision 18025)
+@@ -535,6 +535,7 @@
+ case RheologyBbarAbsGradientEnum: RheologyBbarAbsGradientx(&double_result,elements,nodes,vertices,loads,materials,parameters); break;
+ case DragCoefficientAbsGradientEnum:DragCoefficientAbsGradientx(&double_result,elements,nodes,vertices,loads,materials,parameters); break;
+ case BalancethicknessMisfitEnum: BalancethicknessMisfitx(&double_result); break;
++ case Balancethickness2MisfitEnum: Balancethickness2Misfitx(&double_result); break;
+
+ /*Vector */
+ default:
Index: /issm/oecreview/Archive/17984-18295/ISSM-18025-18026.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18025-18026.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18025-18026.diff (revision 18296)
@@ -0,0 +1,39 @@
+Index: ../trunk-jpl/test/NightlyRun/test435.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test435.m (revision 18025)
++++ ../trunk-jpl/test/NightlyRun/test435.m (revision 18026)
+@@ -46,7 +46,7 @@
+ field_names ={'Bed1','Surface1','Thickness1','Floatingice1','Vx1','Vy1','Vz1','Pressure1',...
+ 'Bed2','Surface2','Thickness2','Floatingice2','Vx2','Vy2','Vz2','Pressure2',...
+ 'Bed3','Surface3','Thickness3','Floatingice3','Vx3','Vy3','Vz3','Pressure3'};
+-field_tolerances={2e-11,5e-12,2e-11,1e-11,4e-10,1e-08,6e-10,1e-13,...
++field_tolerances={2e-11,5e-12,2e-11,1e-11,5e-10,1e-08,6e-10,1e-13,...
+ 3e-11,3e-11,9e-10,7e-11,1e-09,5e-08,1e-09,1e-10,...
+ 1e-10,3e-11,1e-10,7e-11,1e-09,5e-08,1e-09,1e-10};
+ field_values={...
+Index: ../trunk-jpl/test/NightlyRun/test415.py
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test415.py (revision 18025)
++++ ../trunk-jpl/test/NightlyRun/test415.py (revision 18026)
+@@ -35,7 +35,7 @@
+
+ #Fields and tolerances to track changes
+ field_names =['Gradient','Misfits','FrictionCoefficient','Pressure','Vel','Vx','Vy','Vz','Temperature','BasalforcingsMeltingRate']
+-field_tolerances=[5e-10,1e-9,1e-10,1e-13,1e-09,1e-09,1e-09,1e-8,1e-09,1e-6]
++field_tolerances=[1e-9,1e-9,2e-10,1e-13,1e-09,1e-09,1e-09,1e-8,1e-09,1e-6]
+ field_values=[\
+ md.results.SteadystateSolution.Gradient1,\
+ md.results.SteadystateSolution.J,\
+Index: ../trunk-jpl/test/NightlyRun/test415.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test415.m (revision 18025)
++++ ../trunk-jpl/test/NightlyRun/test415.m (revision 18026)
+@@ -23,7 +23,7 @@
+
+ %Fields and tolerances to track changes
+ field_names ={'Gradient','Misfits','FrictionCoefficient','Pressure','Vel','Vx','Vy','Vz','Temperature','BasalforcingsMeltingRate'};
+-field_tolerances={9e-10,1e-9,1e-10,1e-13,1e-09,1e-09,1e-09,1e-8,1e-09,1e-6};
++field_tolerances={1e-09,1e-9,2e-10,1e-13,1e-09,1e-09,1e-09,1e-8,1e-09,1e-6};
+ field_values={...
+ (md.results.SteadystateSolution.Gradient1),...
+ md.results.SteadystateSolution.J,...
Index: /issm/oecreview/Archive/17984-18295/ISSM-18026-18027.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18026-18027.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18026-18027.diff (revision 18296)
@@ -0,0 +1,31 @@
+Index: ../trunk-jpl/src/c/cores/controlvalidation_core.cpp
+===================================================================
+--- ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18026)
++++ ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18027)
+@@ -33,8 +33,8 @@
+ delete Xpetsc;
+
+ /*Allocate Gradient and current vector*/
+- G = xNew(n);
+- X = xNew(n);
++ G = xNew(n);
++ X = xNew(n);
+
+ /*out of solution_type, figure out solution core and adjoint function pointer*/
+ CorePointerFromSolutionEnum(&solutioncore,femmodel->parameters,solution_type);
+@@ -54,7 +54,7 @@
+ IssmDouble exp0 = 0.;
+ IssmDouble incr = -0.2;
+ IssmDouble exp1 = -8.;
+- int num = int((exp1-exp0)/incr);
++ int num = reCast((exp1-exp0)/incr);
+
+ /*Allocate output*/
+ IssmDouble* output = xNew(2*num);
+@@ -91,4 +91,6 @@
+
+ /*Clean up and return*/
+ xDelete(G);
++ xDelete(X);
++ xDelete(X0);
+ }
Index: /issm/oecreview/Archive/17984-18295/ISSM-18027-18028.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18027-18028.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18027-18028.diff (revision 18296)
@@ -0,0 +1,26 @@
+Index: ../trunk-jpl/src/c/cores/controlvalidation_core.cpp
+===================================================================
+--- ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18027)
++++ ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18028)
+@@ -80,14 +80,20 @@
+ for(int i=0;i(2*num);
++ for(int i=0;i<2*num;i++) J_passive[i]=reCast(J[i]);
++ femmodel->results->AddObject(new GenericExternalResult(femmodel->results->Size()+1,JEnum,J_passive,num,2,1,0));
++ xDelete(J_passive);
++ #else
+ femmodel->results->AddObject(new GenericExternalResult(femmodel->results->Size()+1,JEnum,output,num,2,1,0));
++ #endif
+
+ /*Clean up and return*/
+ xDelete(G);
Index: /issm/oecreview/Archive/17984-18295/ISSM-18028-18029.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18028-18029.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18028-18029.diff (revision 18296)
@@ -0,0 +1,13 @@
+Index: ../trunk-jpl/src/c/cores/controlvalidation_core.cpp
+===================================================================
+--- ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18028)
++++ ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18029)
+@@ -88,7 +88,7 @@
+ /*output*/
+ #ifdef _HAVE_ADOLC_
+ IssmPDouble* J_passive=xNew(2*num);
+- for(int i=0;i<2*num;i++) J_passive[i]=reCast(J[i]);
++ for(int i=0;i<2*num;i++) J_passive[i]=reCast(output[i]);
+ femmodel->results->AddObject(new GenericExternalResult(femmodel->results->Size()+1,JEnum,J_passive,num,2,1,0));
+ xDelete(J_passive);
+ #else
Index: /issm/oecreview/Archive/17984-18295/ISSM-18029-18030.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18029-18030.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18029-18030.diff (revision 18296)
@@ -0,0 +1,13 @@
+Index: ../trunk-jpl/src/c/cores/controlvalidation_core.cpp
+===================================================================
+--- ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18029)
++++ ../trunk-jpl/src/c/cores/controlvalidation_core.cpp (revision 18030)
+@@ -54,7 +54,7 @@
+ IssmDouble exp0 = 0.;
+ IssmDouble incr = -0.2;
+ IssmDouble exp1 = -8.;
+- int num = reCast((exp1-exp0)/incr);
++ int num = reCast((exp1-exp0)/incr);
+
+ /*Allocate output*/
+ IssmDouble* output = xNew(2*num);
Index: /issm/oecreview/Archive/17984-18295/ISSM-18030-18031.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18030-18031.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18030-18031.diff (revision 18296)
@@ -0,0 +1,29 @@
+Index: ../trunk-jpl/src/m/classes/damage.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/damage.py (revision 18030)
++++ ../trunk-jpl/src/m/classes/damage.py (revision 18031)
+@@ -165,9 +165,9 @@
+ WriteData(fid,'object',self,'fieldname','spcdamage','format','DoubleMat','mattype',1,'forcinglength',md.mesh.numberofvertices+1)
+ WriteData(fid,'object',self,'fieldname','max_damage','format','Double')
+ WriteData(fid,'object',self,'fieldname','stabilization','format','Integer')
+- WriteData(fid,'object',self,'fieldname','elementinterp','format','String')
++ WriteData(fid,'object',self,'fieldname','maxiter','format','Integer')
++ WriteData(fid,'enum',DamageElementinterpEnum(),'data',StringToEnum(self.elementinterp)[0],'format','Integer')
+ WriteData(fid,'object',self,'fieldname','penalty_threshold','format','Integer')
+- WriteData(fid,'object',self,'fieldname','maxiter','format','Integer')
+ WriteData(fid,'object',self,'fieldname','penalty_lock','format','Integer')
+ WriteData(fid,'object',self,'fieldname','penalty_factor','format','Double')
+
+Index: ../trunk-jpl/src/m/classes/damage.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/damage.m (revision 18030)
++++ ../trunk-jpl/src/m/classes/damage.m (revision 18031)
+@@ -226,7 +226,7 @@
+
+ WriteData(fid,'object',obj,'fieldname','stabilization','format','Integer');
+ WriteData(fid,'object',obj,'fieldname','maxiter','format','Integer');
+- WriteData(fid,'object',obj,'fieldname','elementinterp','format','String');
++ WriteData(fid,'enum',DamageElementinterpEnum(),'data',StringToEnum(self.elementinterp)[0],'format','Integer');
+ WriteData(fid,'object',obj,'fieldname','penalty_threshold','format','Integer');
+ WriteData(fid,'object',obj,'fieldname','penalty_lock','format','Integer');
+ WriteData(fid,'object',obj,'fieldname','penalty_factor','format','Double');
Index: /issm/oecreview/Archive/17984-18295/ISSM-18031-18032.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18031-18032.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18031-18032.diff (revision 18296)
@@ -0,0 +1,13 @@
+Index: ../trunk-jpl/src/m/classes/damage.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/damage.m (revision 18031)
++++ ../trunk-jpl/src/m/classes/damage.m (revision 18032)
+@@ -226,7 +226,7 @@
+
+ WriteData(fid,'object',obj,'fieldname','stabilization','format','Integer');
+ WriteData(fid,'object',obj,'fieldname','maxiter','format','Integer');
+- WriteData(fid,'enum',DamageElementinterpEnum(),'data',StringToEnum(self.elementinterp)[0],'format','Integer');
++ WriteData(fid,'enum',DamageElementinterpEnum(),'data',StringToEnum(obj.elementinterp),'format','Integer');
+ WriteData(fid,'object',obj,'fieldname','penalty_threshold','format','Integer');
+ WriteData(fid,'object',obj,'fieldname','penalty_lock','format','Integer');
+ WriteData(fid,'object',obj,'fieldname','penalty_factor','format','Double');
Index: /issm/oecreview/Archive/17984-18295/ISSM-18032-18033.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18032-18033.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18032-18033.diff (revision 18296)
@@ -0,0 +1,65 @@
+Index: ../trunk-jpl/src/c/analyses/DamageEvolutionAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/DamageEvolutionAnalysis.cpp (revision 18032)
++++ ../trunk-jpl/src/c/analyses/DamageEvolutionAnalysis.cpp (revision 18033)
+@@ -22,6 +22,7 @@
+ parameters->AddObject(iomodel->CopyConstantObject(DamagePenaltyFactorEnum));
+ parameters->AddObject(iomodel->CopyConstantObject(DamageMaxiterEnum));
+ parameters->AddObject(iomodel->CopyConstantObject(DamageMaxDamageEnum));
++ parameters->AddObject(iomodel->CopyConstantObject(DamageElementinterpEnum));
+
+ /*Requested outputs*/
+ iomodel->FetchData(&requestedoutputs,&numoutputs,DamageEvolutionRequestedOutputsEnum);
+@@ -46,8 +47,10 @@
+ }/*}}}*/
+ void DamageEvolutionAnalysis::UpdateElements(Elements* elements,IoModel* iomodel,int analysis_counter,int analysis_type){/*{{{*/
+
+- int finiteelement = P1Enum;
++ int finiteelement;
+
++ iomodel->Constant(&finiteelement,DamageElementinterpEnum);
++
+ /*Update elements: */
+ int counter=0;
+ for(int i=0;inumberofelements;i++){
+@@ -74,8 +77,10 @@
+ }/*}}}*/
+ void DamageEvolutionAnalysis::CreateNodes(Nodes* nodes,IoModel* iomodel){/*{{{*/
+
+- int finiteelement = P1Enum;
++ int finiteelement;
+
++ iomodel->Constant(&finiteelement,DamageElementinterpEnum);
++
+ if(iomodel->domaintype!=Domain2DhorizontalEnum) iomodel->FetchData(1,MeshVertexonbaseEnum);
+ ::CreateNodes(nodes,iomodel,DamageEvolutionAnalysisEnum,finiteelement);
+ iomodel->DeleteData(1,MeshVertexonbaseEnum);
+@@ -83,8 +88,9 @@
+ void DamageEvolutionAnalysis::CreateConstraints(Constraints* constraints,IoModel* iomodel){/*{{{*/
+
+ int stabilization;
+- int finiteelement = P1Enum;
++ int finiteelement;
+ iomodel->Constant(&stabilization,DamageStabilizationEnum);
++ iomodel->Constant(&finiteelement,DamageElementinterpEnum);
+
+ IoModelToConstraintsx(constraints,iomodel,DamageSpcdamageEnum,DamageEvolutionAnalysisEnum,finiteelement);
+
+@@ -469,8 +475,6 @@
+ damage_input = element->GetInput(DamageDEnum); _assert_(damage_input);
+ }
+
+-
+-
+ /*retrieve the desired type of equivalent stress*/
+ element->FindParam(&equivstress,DamageEquivStressEnum);
+
+@@ -508,7 +512,7 @@
+ }
+
+ /*Add input*/
+- element->AddInput(DamageFEnum,f,P1Enum);
++ element->AddInput(DamageFEnum,f,element->GetElementType());
+
+ /*Clean up and return*/
+ xDelete(f);
Index: /issm/oecreview/Archive/17984-18295/ISSM-18033-18034.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18033-18034.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18033-18034.diff (revision 18296)
@@ -0,0 +1,45 @@
+Index: ../trunk-jpl/src/c/analyses/DamageEvolutionAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/DamageEvolutionAnalysis.cpp (revision 18033)
++++ ../trunk-jpl/src/c/analyses/DamageEvolutionAnalysis.cpp (revision 18034)
+@@ -87,9 +87,7 @@
+ }/*}}}*/
+ void DamageEvolutionAnalysis::CreateConstraints(Constraints* constraints,IoModel* iomodel){/*{{{*/
+
+- int stabilization;
+ int finiteelement;
+- iomodel->Constant(&stabilization,DamageStabilizationEnum);
+ iomodel->Constant(&finiteelement,DamageElementinterpEnum);
+
+ IoModelToConstraintsx(constraints,iomodel,DamageSpcdamageEnum,DamageEvolutionAnalysisEnum,finiteelement);
+@@ -449,8 +447,8 @@
+ int equivstress,domaintype;
+
+ /*Fetch number of vertices and allocate output*/
+- int numvertices = element->GetNumberOfVertices();
+- IssmDouble* f = xNew(numvertices);
++ int numnodes = element->GetNumberOfNodes();
++ IssmDouble* f = xNew(numnodes);
+
+ /*retrieve parameters:*/
+ element->FindParam(&c1,DamageC1Enum);
+@@ -480,8 +478,8 @@
+
+ /*Calculate damage evolution source term: */
+ Gauss* gauss=element->NewGauss();
+- for (int iv=0;ivGaussVertex(iv);
++ for (int i=0;iGaussNode(element->GetElementType(),i);
+
+ damage_input->GetInputValue(&damage,gauss);
+ tau_xx_input->GetInputValue(&tau_xx,gauss);
+@@ -508,7 +506,7 @@
+ PosPsi=max(Psi,0.);
+ NegPsi=max(-Chi,0.); /* healing only for compressive stresses */
+
+- f[iv]= c1*(pow(PosPsi,c2) - healing*pow(NegPsi,c2))*pow((1.-damage),-c3);
++ f[i]= c1*(pow(PosPsi,c2) - healing*pow(NegPsi,c2))*pow((1.-damage),-c3);
+ }
+
+ /*Add input*/
Index: /issm/oecreview/Archive/17984-18295/ISSM-18034-18035.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18034-18035.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18034-18035.diff (revision 18296)
@@ -0,0 +1,13 @@
+Index: ../trunk-jpl/src/c/classes/FemModel.cpp
+===================================================================
+--- ../trunk-jpl/src/c/classes/FemModel.cpp (revision 18034)
++++ ../trunk-jpl/src/c/classes/FemModel.cpp (revision 18035)
+@@ -1239,7 +1239,7 @@
+ thicknessobs_input->GetInputValue(&thicknessobs,gauss);
+ gauss->GaussPoint(ig);
+
+- J +=0.5*(thickness*thickness - thicknessobs*thicknessobs)*weight*Jdet*gauss->weight;
++ J +=0.5*(thickness*thickness - thicknessobs*thicknessobs)*(thickness*thickness - thicknessobs*thicknessobs)*weight*Jdet*gauss->weight;
+ }
+
+ /*clean up and Return: */
Index: /issm/oecreview/Archive/17984-18295/ISSM-18035-18036.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18035-18036.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18035-18036.diff (revision 18296)
@@ -0,0 +1,31 @@
+Index: ../trunk-jpl/src/c/analyses/Balancethickness2Analysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/Balancethickness2Analysis.cpp (revision 18035)
++++ ../trunk-jpl/src/c/analyses/Balancethickness2Analysis.cpp (revision 18036)
+@@ -71,7 +71,8 @@
+ int numnodes = element->GetNumberOfNodes();
+
+ /*Initialize Element vector and other vectors*/
+- ElementMatrix* Ke = element->NewElementMatrix();
++ ElementMatrix* Ke = element->NewElementMatrix();
++ IssmDouble* dbasis = xNew(2*numnodes);
+
+ /*Retrieve all inputs and parameters*/
+ element->GetVerticesCoordinates(&xyz_list);
+@@ -80,8 +81,6 @@
+ Gauss* gauss=element->NewGauss(2);
+ for(int ig=gauss->begin();igend();ig++){
+ gauss->GaussPoint(ig);
+-
+- IssmDouble* dbasis=xNew(2*numnodes);
+ element->NodalFunctionsDerivatives(dbasis,xyz_list,gauss);
+ element->JacobianDeterminant(&Jdet,xyz_list,gauss);
+
+@@ -94,6 +93,7 @@
+
+ /*Clean up and return*/
+ xDelete(xyz_list);
++ xDelete(dbasis);
+ delete gauss;
+ return Ke;
+ }/*}}}*/
Index: /issm/oecreview/Archive/17984-18295/ISSM-18036-18037.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18036-18037.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18036-18037.diff (revision 18296)
@@ -0,0 +1,22 @@
+Index: ../trunk-jpl/src/c/analyses/AdjointBalancethickness2Analysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/AdjointBalancethickness2Analysis.cpp (revision 18036)
++++ ../trunk-jpl/src/c/analyses/AdjointBalancethickness2Analysis.cpp (revision 18037)
+@@ -93,7 +93,7 @@
+
+ NUMx = 2.*dbasis[0]*dphi[0]*(dphi[0]*dphi[0] + dphi[1]*dphi[1] - hu2);
+ NUMy = 2.*dbasis[1]*dphi[1]*(dphi[0]*dphi[0] + dphi[1]*dphi[1] - hu2);
+- DEN = vbar2*vbar2;
++ DEN = vbar2*vbar2+1.e-14;
+
+ /*Loop over all requested responses*/
+ for(int resp=0;respvalues[i]+=(NUMx+NUMy)/DEN *weight*Jdet*gauss->weight*basis[i];
++ for(i=0;ivalues[i]+=(NUMx+NUMy)/DEN *weight*Jdet*gauss->weight;
+ break;
+ default:
+ _error_("response " << EnumToStringx(responses[resp]) << " not supported yet");
Index: /issm/oecreview/Archive/17984-18295/ISSM-18041-18042.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18041-18042.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18041-18042.diff (revision 18296)
@@ -0,0 +1,52 @@
+Index: ../trunk-jpl/test/NightlyRun/test275.py
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test275.py (revision 18041)
++++ ../trunk-jpl/test/NightlyRun/test275.py (revision 18042)
+@@ -18,7 +18,7 @@
+ md.damage.isdamage=1
+ md.damage.D=0.1*numpy.ones(md.mesh.numberofvertices)
+ md.damage.spcdamage=numpy.nan*numpy.ones(md.mesh.numberofvertices)
+-md.damage.law='pralong'
++md.damage.law=1
+
+ md.damage.c1=1.e-11
+ md.damage.c2=0.4
+Index: ../trunk-jpl/test/NightlyRun/test275.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test275.m (revision 18041)
++++ ../trunk-jpl/test/NightlyRun/test275.m (revision 18042)
+@@ -5,7 +5,7 @@
+ md.damage.isdamage=1;
+ md.damage.D=0.1*ones(md.mesh.numberofvertices,1);
+ md.damage.spcdamage=NaN*ones(md.mesh.numberofvertices,1);
+-md.damage.law='pralong';
++md.damage.law=1;
+
+ md.damage.c1=1.e-11;
+ md.damage.c2=0.4;
+Index: ../trunk-jpl/test/NightlyRun/test271.py
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test271.py (revision 18041)
++++ ../trunk-jpl/test/NightlyRun/test271.py (revision 18042)
+@@ -18,7 +18,7 @@
+ md.damage.isdamage=1
+ md.damage.D=numpy.zeros(md.mesh.numberofvertices)
+ md.damage.spcdamage=numpy.nan*numpy.ones(md.mesh.numberofvertices)
+-md.damage.law='pralong'
++md.damage.law=1
+ md.damage.stabilization=1;
+
+ pos=numpy.nonzero(numpy.logical_and(md.mask.ice_levelset!=0,md.mesh.vertexonboundary==1))
+Index: ../trunk-jpl/test/NightlyRun/test271.m
+===================================================================
+--- ../trunk-jpl/test/NightlyRun/test271.m (revision 18041)
++++ ../trunk-jpl/test/NightlyRun/test271.m (revision 18042)
+@@ -5,7 +5,7 @@
+ md.damage.isdamage=1;
+ md.damage.D=zeros(md.mesh.numberofvertices,1);
+ md.damage.spcdamage=NaN*ones(md.mesh.numberofvertices,1);
+-md.damage.law='pralong';
++md.damage.law=1;
+
+ %boundary conditions for damage, to be put in SquareShelf.par
+ boundary=zeros(md.mesh.numberofvertices,1);
Index: /issm/oecreview/Archive/17984-18295/ISSM-18042-18043.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18042-18043.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18042-18043.diff (revision 18296)
@@ -0,0 +1,170 @@
+Index: ../trunk-jpl/src/m/classes/damage.py
+===================================================================
+--- ../trunk-jpl/src/m/classes/damage.py (revision 18042)
++++ ../trunk-jpl/src/m/classes/damage.py (revision 18043)
+@@ -18,7 +18,7 @@
+ #damage:
+ self.isdamage = 0.
+ self.D = float('NaN')
+- self.law = ''
++ self.law = float('NaN')
+ self.spcdamage = float('NaN')
+ self.max_damage = float('NaN')
+
+@@ -52,7 +52,7 @@
+ s+="%s\n" % fielddisplay(self,"isdamage","is damage mechanics being used? [0 (default) or 1]")
+ if self.isdamage:
+ s+="%s\n" % fielddisplay(self,"D","damage tensor (scalar for now)")
+- s+="%s\n" % fielddisplay(self,"law","damage law (string) from ['undamaged','pralong']")
++ s+="%s\n" % fielddisplay(self,"law","damage law ['0: undamaged','1: pralong']")
+ s+="%s\n" % fielddisplay(self,"spcdamage","damage constraints (NaN means no constraint)")
+ s+="%s\n" % fielddisplay(self,"max_damage","maximum possible damage (0<=max_damage<1)")
+
+@@ -63,7 +63,7 @@
+ s+="%s\n" % fielddisplay(self,"penalty_threshold","threshold to declare convergence of damage evolution solution (default is 0)")
+ s+="%s\n" % fielddisplay(self,"penalty_factor","scaling exponent (default is 3)")
+
+- if (self.law=='pralong'):
++ if self.law== 1 or self.law == 2:
+ s+="%s\n" % fielddisplay(self,"c1","damage parameter 1 ")
+ s+="%s\n" % fielddisplay(self,"c2","damage parameter 2 ")
+ s+="%s\n" % fielddisplay(self,"c3","damage parameter 3 ")
+@@ -80,7 +80,7 @@
+ #damage parameters:
+ self.isdamage=0
+ self.D=0
+- self.law='undamaged'
++ self.law=0
+
+ self.max_damage=1-1e-5 #if damage reaches 1, solve becomes singular, as viscosity becomes nil
+
+@@ -131,7 +131,7 @@
+ if self.isdamage:
+ md = checkfield(md,'fieldname','damage.D','>=',0,'<=',self.max_damage,'size',[md.mesh.numberofvertices])
+ md = checkfield(md,'fieldname','damage.max_damage','<',1,'>=',0)
+- md = checkfield(md,'fieldname','damage.law','values',['undamaged','pralong'])
++ md = checkfield(md,'fieldname','damage.law','numel',[1],'values',[0,1,2])
+ md = checkfield(md,'fieldname','damage.spcdamage','forcing',1)
+ md = checkfield(md,'fieldname','damage.stabilization','numel',[1],'values',[0,1,2])
+ md = checkfield(md,'fieldname','damage.maxiter','>=0',0)
+@@ -140,7 +140,7 @@
+ md = checkfield(md,'fieldname','damage.penalty_lock','>=0',0)
+ md = checkfield(md,'fieldname','damage.penalty_threshold','>=0',0)
+
+- if self.law == 'pralong':
++ if self.law == 1 or self.law == 2:
+ md = checkfield(md,'fieldname','damage.healing','>=',0)
+ md = checkfield(md,'fieldname','damage.c1','>=',0)
+ md = checkfield(md,'fieldname','damage.c2','>=',0)
+@@ -150,7 +150,7 @@
+ md = checkfield(md,'fieldname','damage.healing','>=',0)
+ md = checkfield(md,'fieldname','damage.equiv_stress','numel',[1],'values',[0,1])
+ md = checkfield(md,'fieldname','damage.requested_outputs','stringrow',1)
+- elif m.strcmpi(self.law,'undamaged'):
++ elif self.law != 0:
+ if (solution==DamageEvolutionSolutionEnum):
+ raise RuntimeError('Invalid evolution law (md.damage.law) for a damage solution')
+
+@@ -161,7 +161,7 @@
+ WriteData(fid,'object',self,'fieldname','isdamage','format','Boolean')
+ if self.isdamage:
+ WriteData(fid,'object',self,'fieldname','D','format','DoubleMat','mattype',1)
+- WriteData(fid,'object',self,'fieldname','law','format','String')
++ WriteData(fid,'object',self,'fieldname','law','format','Integer')
+ WriteData(fid,'object',self,'fieldname','spcdamage','format','DoubleMat','mattype',1,'forcinglength',md.mesh.numberofvertices+1)
+ WriteData(fid,'object',self,'fieldname','max_damage','format','Double')
+ WriteData(fid,'object',self,'fieldname','stabilization','format','Integer')
+@@ -171,7 +171,7 @@
+ WriteData(fid,'object',self,'fieldname','penalty_lock','format','Integer')
+ WriteData(fid,'object',self,'fieldname','penalty_factor','format','Double')
+
+- if self.law=='pralong':
++ if self.law==1 or self.law==2:
+ WriteData(fid,'object',self,'fieldname','c1','format','Double')
+ WriteData(fid,'object',self,'fieldname','c2','format','Double')
+ WriteData(fid,'object',self,'fieldname','c3','format','Double')
+Index: ../trunk-jpl/src/m/classes/damage.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/damage.m (revision 18042)
++++ ../trunk-jpl/src/m/classes/damage.m (revision 18043)
+@@ -8,7 +8,7 @@
+ %damage
+ isdamage = 0;
+ D = NaN;
+- law = '';
++ law = NaN;
+ spcdamage = NaN;
+ max_damage = NaN;
+
+@@ -108,7 +108,7 @@
+ %damage parameters:
+ obj.isdamage=0;
+ obj.D=0;
+- obj.law='undamaged';
++ obj.law=0;
+
+ obj.max_damage=1-1e-5; %if damage reaches 1, solve becomes singular, as viscosity becomes nil
+
+@@ -147,7 +147,7 @@
+
+ md = checkfield(md,'fieldname','damage.isdamage','values',[1,0]);
+ if obj.isdamage,
+- md = checkfield(md,'fieldname','damage.law','values',{'undamaged','pralong'});
++ md = checkfield(md,'fieldname','damage.law','numel',[1],'values',[0,1,2]);
+ md = checkfield(md,'fieldname','damage.D','>=',0,'<=',obj.max_damage,'size',[md.mesh.numberofvertices 1]);
+ md = checkfield(md,'fieldname','damage.spcdamage','forcing',1);
+ md = checkfield(md,'fieldname','damage.max_damage','<',1,'>=',0);
+@@ -159,7 +159,7 @@
+ md = checkfield(md,'fieldname','damage.penalty_threshold','>=0',0);
+ end
+
+- if strcmpi(obj.law,'pralong'),
++ if (obj.law==1 | obj.law==2),
+ md = checkfield(md,'fieldname','damage.healing','>=',0);
+ md = checkfield(md,'fieldname','damage.c1','>=',0);
+ md = checkfield(md,'fieldname','damage.c2','>=',0);
+@@ -168,7 +168,7 @@
+ md = checkfield(md,'fieldname','damage.stress_threshold','>=',0);
+ md = checkfield(md,'fieldname','damage.equiv_stress','numel',[1],'values',[0 1]);
+ md = checkfield(md,'fieldname','damage.requested_outputs','stringrow',1);
+- elseif strcmpi(obj.law,'undamaged'),
++ elseif (obj.law>0),
+ if (solution==DamageEvolutionSolutionEnum),
+ error('Invalid evolution law (md.damage.law) for a damage solution');
+ end
+@@ -190,7 +190,7 @@
+
+ fielddisplay(obj,'isdamage','is damage mechanics being used? {true,false}');
+ if obj.isdamage,
+- fielddisplay(obj,'law','damage law (string) from {''undamaged'',''pralong''}');
++ fielddisplay(obj,'law','damage law {''0: undamaged'',''1: pralong''}');
+ fielddisplay(obj,'D','damage tensor (scalar)');
+ fielddisplay(obj,'spcdamage','damage constraints (NaN means no constraint)');
+ fielddisplay(obj,'max_damage','maximum possible damage (0<=max_damage<1)');
+@@ -203,7 +203,7 @@
+ fielddisplay(obj,'penalty_factor','scaling exponent (default is 3)');
+ end
+
+- if strcmpi(obj.law,'pralong'),
++ if (obj.law==1 | obj.law==2),
+ fielddisplay(obj,'c1','damage parameter 1');
+ fielddisplay(obj,'c2','damage parameter 2');
+ fielddisplay(obj,'c3','damage parameter 3');
+@@ -219,7 +219,7 @@
+
+ WriteData(fid,'object',obj,'fieldname','isdamage','format','Boolean');
+ if obj.isdamage,
+- WriteData(fid,'object',obj,'fieldname','law','format','String');
++ WriteData(fid,'object',obj,'fieldname','law','format','Integer');
+ WriteData(fid,'object',obj,'fieldname','D','format','DoubleMat','mattype',1);
+ WriteData(fid,'object',obj,'fieldname','spcdamage','format','DoubleMat','mattype',1,'forcinglength',md.mesh.numberofvertices+1);
+ WriteData(fid,'object',obj,'fieldname','max_damage','format','Double');
+@@ -232,7 +232,7 @@
+ WriteData(fid,'object',obj,'fieldname','penalty_factor','format','Double');
+ end
+
+- if strcmpi(obj.law,'pralong'),
++ if (obj.law==1 | obj.law==2),
+ WriteData(fid,'object',obj,'fieldname','c1','format','Double');
+ WriteData(fid,'object',obj,'fieldname','c2','format','Double');
+ WriteData(fid,'object',obj,'fieldname','c3','format','Double');
Index: /issm/oecreview/Archive/17984-18295/ISSM-18043-18044.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18043-18044.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18043-18044.diff (revision 18296)
@@ -0,0 +1,166 @@
+Index: ../trunk-jpl/src/m/classes/damage.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/damage.m (revision 18043)
++++ ../trunk-jpl/src/m/classes/damage.m (revision 18044)
+@@ -8,82 +8,82 @@
+ %damage
+ isdamage = 0;
+ D = NaN;
+- law = NaN;
++ law = 0;
+ spcdamage = NaN;
+- max_damage = NaN;
++ max_damage = 0;
+
+ %numerical
+- stabilization = NaN;
+- maxiter = NaN;
++ stabilization = 0;
++ maxiter = 0;
+ elementinterp = '';
+- penalty_threshold = NaN;
+- penalty_lock = NaN;
+- penalty_factor = NaN;
++ penalty_threshold = 0;
++ penalty_lock = 0;
++ penalty_factor = 0;
+
+ %general parameters for evolution law:
+- stress_threshold = NaN;
+- c1 = NaN;
+- c2 = NaN;
+- c3 = NaN;
+- c4 = NaN;
+- healing = NaN;
+- equiv_stress = NaN;
++ stress_threshold = 0;
++ c1 = 0;
++ c2 = 0;
++ c3 = 0;
++ c4 = 0;
++ healing = 0;
++ equiv_stress = 0;
+ requested_outputs = {};
+ end
+ methods
+- function createxml(obj,fid) % {{{
+- fprintf(fid, '\n\n');
+- fprintf(fid, '%s\n', '');
+- fprintf(fid, '%s\n', '');
+-
+- %fprintf(fid,'%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' damage law (string) from {"undamaged","pralong"} ','');
+- % drop-down
+- fprintf(fid,'%s%s%s%s%s\n\t%s\n','','');
+-
+- % law = 'undamage'
+- fprintf(fid,'\t%s%s%s%s%s\n\t\t%s\n','');
+-
+- % law = 'pralong'
+- fprintf(fid,'\t%s%s%s%s%s\n\t\t%s\n','');
+-
+-
+- % footer for drop-down
+- fprintf(fid,'\t%s\n%s\n%s',' damage law (string) from {"undamaged","pralong"} ','');
+-
+-
++ function createxml(obj,fid) % {{{
++ fprintf(fid, '\n\n');
++ fprintf(fid, '%s\n', '');
++ fprintf(fid, '%s\n', '');
++
++ %fprintf(fid,'%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' damage law (string) from {"undamaged","pralong"} ','');
++ % drop-down
++ fprintf(fid,'%s%s%s%s%s\n\t%s\n','','');
++
++ % law = 'undamage'
++ fprintf(fid,'\t%s%s%s%s%s\n\t\t%s\n','');
++
++ % law = 'pralong'
++ fprintf(fid,'\t%s%s%s%s%s\n\t\t%s\n','');
++
++
++ % footer for drop-down
++ fprintf(fid,'\t%s\n%s\n%s',' damage law (string) from {"undamaged","pralong"} ','');
++
++
+ fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' damage tensor (scalar) ','');
+- fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' damage law (string) from {"undamaged","pralong"} ','');
+- fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' damage constraints (NaN means no constraint) ','');
+- fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' maximum possible damage (0<=max_damage<1) ','');
+-
+- % stabilization (0,1, or 2) drop-down
+- fprintf(fid,'%s\n%s\n%s\n%s\n', '',' ',' 0: no, 1: artificial_diffusivity, 2: SUPG ');
+- fprintf(fid, '%s\n', ' ');
+- fprintf(fid, '%s\n', ' ');
+- fprintf(fid, '%s\n', ' ');
+- fprintf(fid, '%s\n','');
+-
+- fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' maximum number of non linear iterations ','');
+- fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' stabilize unstable damage constraints that keep zigzagging after n iteration (default is 0, no stabilization) ','');
+- fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' threshold to declare convergence of damage evolution solution (default is 0) ','');
+- fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' scaling exponent (default is 3) ','');
+-
+- end % }}}
++ fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' damage law (string) from {"undamaged","pralong"} ','');
++ fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' damage constraints (NaN means no constraint) ','');
++ fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' maximum possible damage (0<=max_damage<1) ','');
++
++ % stabilization (0,1, or 2) drop-down
++ fprintf(fid,'%s\n%s\n%s\n%s\n', '',' ',' 0: no, 1: artificial_diffusivity, 2: SUPG ');
++ fprintf(fid, '%s\n', ' ');
++ fprintf(fid, '%s\n', ' ');
++ fprintf(fid, '%s\n', ' ');
++ fprintf(fid, '%s\n','');
++
++ fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' maximum number of non linear iterations ','');
++ fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' stabilize unstable damage constraints that keep zigzagging after n iteration (default is 0, no stabilization) ','');
++ fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' threshold to declare convergence of damage evolution solution (default is 0) ','');
++ fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n', '', ' ',' scaling exponent (default is 3) ','');
++
++ end % }}}
+
+ function obj = damage(varargin) % {{{
+ switch nargin
+@@ -154,9 +154,9 @@
+ md = checkfield(md,'fieldname','damage.stabilization','numel',[1],'values',[0 1 2]);
+ md = checkfield(md,'fieldname','damage.maxiter','>=0',0);
+ md = checkfield(md,'fieldname','damage.elementinterp','values',{'P1','P2'});
+- md = checkfield(md,'fieldname','damage.penalty_factor','>=0',0);
+- md = checkfield(md,'fieldname','damage.penalty_lock','>=0',0);
+- md = checkfield(md,'fieldname','damage.penalty_threshold','>=0',0);
++ md = checkfield(md,'fieldname','damage.penalty_factor','>=',0);
++ md = checkfield(md,'fieldname','damage.penalty_lock','>=',0);
++ md = checkfield(md,'fieldname','damage.penalty_threshold','>=',0);
+ end
+
+ if (obj.law==1 | obj.law==2),
Index: /issm/oecreview/Archive/17984-18295/ISSM-18044-18045.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18044-18045.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18044-18045.diff (revision 18296)
@@ -0,0 +1,20 @@
+Index: ../trunk-jpl/src/m/classes/damage.m
+===================================================================
+--- ../trunk-jpl/src/m/classes/damage.m (revision 18044)
++++ ../trunk-jpl/src/m/classes/damage.m (revision 18045)
+@@ -168,14 +168,11 @@
+ md = checkfield(md,'fieldname','damage.stress_threshold','>=',0);
+ md = checkfield(md,'fieldname','damage.equiv_stress','numel',[1],'values',[0 1]);
+ md = checkfield(md,'fieldname','damage.requested_outputs','stringrow',1);
+- elseif (obj.law>0),
++ elseif (obj.law~=0),
+ if (solution==DamageEvolutionSolutionEnum),
+ error('Invalid evolution law (md.damage.law) for a damage solution');
+ end
+- else
+- error('invalid damage evolution law');
+ end
+-
+ end % }}}
+ function list=defaultoutputs(self,md) % {{{
+
Index: /issm/oecreview/Archive/17984-18295/ISSM-18049-18050.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18049-18050.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18049-18050.diff (revision 18296)
@@ -0,0 +1,51 @@
+Index: ../trunk-jpl/externalpackages/petsc/install-3.2-discover-intel13.sh
+===================================================================
+--- ../trunk-jpl/externalpackages/petsc/install-3.2-discover-intel13.sh (revision 0)
++++ ../trunk-jpl/externalpackages/petsc/install-3.2-discover-intel13.sh (revision 18050)
+@@ -0,0 +1,39 @@
++#!/bin/bash
++set -eu
++
++#Some cleanup
++rm -rf install petsc-3.2-p3 src
++mkdir install src
++
++#Download from ISSM server
++$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/petsc-3.2-p3.tar.gz' 'petsc-3.2-p3.tar.gz'
++
++#Untar and move petsc to install directory
++tar -zxvf petsc-3.2-p3.tar.gz
++mv petsc-3.2-p3/* src/
++rm -rf petsc-3.2-p3
++
++#configure
++cd src
++./config/configure.py \
++ --prefix="$ISSM_DIR/externalpackages/petsc/install" \
++ --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
++ --PETSC_ARCH="$ISSM_ARCH" \
++ --with-batch=1 \
++ --with-debugging=0 \
++ --with-shared-libraries=1 \
++ --known-mpi-shared-libraries=1 \
++ --with-mpi-dir=/usr/local/intel/mpi/4.0.3.008/lib64/ \
++ --with-blas-lapack-dir=/usr/local/intel/Composer/composer_xe_2013.3.163/mkl/ \
++ --with-scalapack-lib=/usr/local/intel/Composer/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_scalapack_lp64.a \
++ --with-scalapack-include=/usr/local/intel/Composer/composer_xe_2013.3.163/mkl/include/ \
++ --with-blacs-lib=/usr/local/intel/Composer/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.a \
++ --with-blacs-include=/usr/local/intel/Composer/composer_xe_2013.3.163/mkl/include/ \
++ --download-mumps=yes \
++ --download-scalapack=no \
++ --download-blacs=no \
++ --download-plapack=no \
++ --download-parmetis=yes \
++ --with-pic=1
++
++echo "== Follow PETSc's instructions"
+
+Property changes on: ../trunk-jpl/externalpackages/petsc/install-3.2-discover-intel13.sh
+___________________________________________________________________
+Added: svn:executable
+## -0,0 +1 ##
++*
+\ No newline at end of property
Index: /issm/oecreview/Archive/17984-18295/ISSM-18052-18053.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18052-18053.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18052-18053.diff (revision 18296)
@@ -0,0 +1,227 @@
+Index: ../trunk-jpl/src/perl/m2cpp.pl
+===================================================================
+--- ../trunk-jpl/src/perl/m2cpp.pl (revision 18052)
++++ ../trunk-jpl/src/perl/m2cpp.pl (revision 18053)
+@@ -1,211 +0,0 @@
+-#!/usr/bin/perl --
+-if ($#ARGV != 0){
+- die "Argument must contain filename $#ARGV"
+-}
+-else{
+- $fname=$ARGV[0];
+-}
+-
+-# If we have a .m file inside a (@)-folder with the same name :
+-# we will read each file of this folder
+-if ($fname =~ /^(.*)\@([\d\w-_]*)[\/\\](\2)\.m/){
+- $name = $2;
+- $nameExt = $name.".m";
+- $dir = $1."@".$name."/\*.m";
+- @fic = glob($dir);
+- $i = 0;
+- @listeFic[0] = $fname;
+- foreach $my_test (@fic){
+- if (!($my_test =~ $nameExt)){
+- $i++;
+- @listeFic[$i] = $my_test;
+- }
+- }
+-}
+-# otherwise @-folder, but .m with a different name : ignore it
+-elsif ($fname =~ /^(.*)\@([\d\w-_]*)[\/\\](.*)\.m/){
+-}
+-# otherwise
+-else{
+- @listeFic[0] = $fname;
+-}
+-foreach $my_fic (@listeFic){
+-
+- open(my $in, $my_fic);
+-
+- $declTypeDef="";
+- $inClass = 0;
+- $inAbstractMethodBlock = 0;
+- $listeProperties = 0;
+- $listeEnumeration = 0;
+-
+- $methodAttribute = "";
+-
+- while (<$in>){
+- #if (/(^\s*)(%)(.*)/){
+- # $output=$output."$1/// \@brief $3";
+- #}
+- if (/(^\s*)(%>)(.*)/){
+- $output=$output."$1///$3";
+- }
+- if (($listeProperties == 1) && (/(^\s*\bend\b\s*)/)){
+- $listeProperties = 0;
+- }
+- if (($inAbstractMethodBlock == 1) && (/(^\s*\bend\b\s*)/)){
+- $inAbstractMethodBlock = 0;
+- }
+- if (($listeProperties == 1) && (/^\s*([\w\d]*)\s*(=\s*[\w\d{}'',\s\[\]\.]*)?.*(%>.*)?/)){
+- $propertyName = $1;
+- $propertyValue = $2;
+- $propertyComment = $3;
+- if (!($propertyName =~ /^$/)){
+- if ($typeProperties =~ /Constant/){
+- $properties = $propertyName."$propertyValue;$propertyComment";
+- }
+- else{
+- $properties = $propertyName.";$propertyComment";
+- }
+-
+- $properties =~ s/%>/\/\/\//g;
+- $properties =~ s/%/\/\//g;
+- $output=$output.$typeProperties."Property ".$properties;
+- }
+- }
+- if (($listeEnumeration == 1) && (/(^\s*\bend\b\s*)/)){
+- $listeEnumeration = 0;
+- $output=$output."};";
+- }
+- if (($listeEvents == 1) && (/(^\s*\bend\b\s*)/)){
+- $listeEvents = 0;
+- $output=$output."};";
+- }
+- if (($listeEvents == 1) && (/^\s*([\w\d]*)\s*/)){
+- $name_event = $1;
+- if (!($name_event =~ /^$/)){
+- $event = $name_event.",";
+- $event =~ s/%>/\/\/\//g;
+- $event =~ s/%/\/\//g;
+- $output=$output.$event;
+- }
+- }
+- if (($listeEnumeration == 1) && (/^\s*([\w\d]*)\s*(\(.*\))?(%>.*)?/)){
+- $name_enum = $1;
+- $val_enum = $2;
+- if (!($name_enum =~ /^$/)){
+- if (!($val_enum =~ /^$/)){
+- $enum = "$name_enum=$val_enum,";
+- $enum =~ s/%>/\/\/\//g;
+- $enum =~ s/%/\/\//g;
+- $output=$output.$enum;
+- }
+- else{
+- $enum = "$name_enum,";
+- $enum =~ s/%>/\/\/\//g;
+- $enum =~ s/%/\/\//g;
+- $output=$output.$enum;
+- }
+- }
+- }
+- if (/(^\s*function)\s*([\] \w\d,_\[]+=)?\s*([.\w\d_-]*)\s*\(?([\w\d\s,~]*)\)?(%?.*)/){
+- $functionKeyWord = $1;
+- $functionName = $3;
+- $arguments = $4;
+- if ($inClass == 0){
+- $output = $declTypeDef.$output;
+- $declTypeDef = "";
+- }
+- $arguments =~ s/,/,in /g;
+- $arguments =~ s/~/ignoredArg/g;
+- $arguments = "in $arguments";
+- if ($arguments =~ /^in $/){
+- $arguments = "";
+- }
+- $ligne = "$methodAttribute $functionKeyWord $functionName($arguments);";
+- $output=$output.$ligne;
+- }
+- # Signature of functions in abstract methods
+- elsif ((/^\s*([\] \w\d,_\[]+=)?\s*([.\w\d_-]+)\s*\(?([\w\d\s,~]*)\)?(%?.*)/) & ($inAbstractMethodBlock == 1) ){
+- $functionName = $2;
+- $arguments = $3;
+- $arguments =~ s/,/,in /g;
+- $arguments =~ s/~/ignoredArg/g;
+- $arguments = "in $arguments";
+- if ($arguments =~ /^in $/){
+- $arguments = "";
+- }
+- $ligne = "$methodAttribute $functionKeyWord $functionName($arguments);";
+- $output=$output.$ligne;
+- }
+- # inheritance for classes
+- if (/(^\s*classdef)\s*(\s*\([\{\}\?\w,=\s]+\s*\))?\s*([\w\d_]+)\s*
+
+
+- Copyright (C) 2013
++ Copyright (C) 2014
+ */
Index: /issm/oecreview/Archive/17984-18295/ISSM-18053-18054.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18053-18054.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18053-18054.diff (revision 18296)
@@ -0,0 +1,31 @@
+Index: ../trunk-jpl/src/c/analyses/AdjointBalancethickness2Analysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/AdjointBalancethickness2Analysis.cpp (revision 18053)
++++ ../trunk-jpl/src/c/analyses/AdjointBalancethickness2Analysis.cpp (revision 18054)
+@@ -48,7 +48,7 @@
+ /*Intermediaries */
+ int num_responses,i;
+ IssmDouble hobs,hu2,weight,NUMx,NUMy,DEN,Jdet;
+- IssmDouble vx,vy,vbar2,nux,nuy,dphi[2];
++ IssmDouble vx,vy,vbar2,nux,nuy,phi,dphi[2];
+ int *responses = NULL;
+ IssmDouble *xyz_list = NULL;
+
+@@ -85,6 +85,7 @@
+ vy_input->GetInputValue(&vy,gauss);
+ nux_input->GetInputValue(&nux,gauss);
+ nuy_input->GetInputValue(&nuy,gauss);
++ potential_input->GetInputValue(&phi,gauss);
+ potential_input->GetInputDerivativeValue(&dphi[0],xyz_list,gauss);
+ thicknessobs_input->GetInputValue(&hobs,gauss);
+
+@@ -101,7 +102,8 @@
+
+ switch(responses[resp]){
+ case Balancethickness2MisfitEnum:
+- for(i=0;ivalues[i]+=(NUMx+NUMy)/DEN *weight*Jdet*gauss->weight;
++ //for(i=0;ivalues[i]+=(NUMx+NUMy)/DEN *weight*Jdet*gauss->weight;
++ for(i=0;ivalues[i]+= phi*basis[i]*weight*Jdet*gauss->weight;
+ break;
+ default:
+ _error_("response " << EnumToStringx(responses[resp]) << " not supported yet");
Index: /issm/oecreview/Archive/17984-18295/ISSM-18054-18055.diff
===================================================================
--- /issm/oecreview/Archive/17984-18295/ISSM-18054-18055.diff (revision 18296)
+++ /issm/oecreview/Archive/17984-18295/ISSM-18054-18055.diff (revision 18296)
@@ -0,0 +1,859 @@
+Index: ../trunk-jpl/src/c/analyses/StressbalanceSIAAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/StressbalanceSIAAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/StressbalanceSIAAnalysis.h (revision 18055)
+@@ -30,6 +30,7 @@
+ ElementVector* CreatePVector2D(Element* element);
+ ElementVector* CreatePVector3D(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/ThermalAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/ThermalAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/ThermalAnalysis.h (revision 18055)
+@@ -34,6 +34,7 @@
+ void GetBAdvec(IssmDouble* B,Element* element,IssmDouble* xyz_list,Gauss* gauss);
+ void GetBAdvecprime(IssmDouble* B,Element* element,IssmDouble* xyz_list,Gauss* gauss);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/BalancethicknessAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/BalancethicknessAnalysis.cpp (revision 18054)
++++ ../trunk-jpl/src/c/analyses/BalancethicknessAnalysis.cpp (revision 18055)
+@@ -478,6 +478,9 @@
+ void BalancethicknessAnalysis::GetSolutionFromInputs(Vector* solution,Element* element){/*{{{*/
+ _error_("not implemented yet");
+ }/*}}}*/
++void BalancethicknessAnalysis::GradientJ(Vector* gradient,int control_index){/*{{{*/
++ _error_("Not implemented yet");
++}/*}}}*/
+ void BalancethicknessAnalysis::InputUpdateFromSolution(IssmDouble* solution,Element* element){/*{{{*/
+
+ int domaintype;
+Index: ../trunk-jpl/src/c/analyses/ExtrudeFromBaseAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/ExtrudeFromBaseAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/ExtrudeFromBaseAnalysis.h (revision 18055)
+@@ -30,6 +30,7 @@
+ ElementVector* CreatePVector(Element* element);
+ void GetB(IssmDouble* B,Element* element,int dim,IssmDouble* xyz_list,Gauss* gauss);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/AdjointHorizAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/AdjointHorizAnalysis.cpp (revision 18054)
++++ ../trunk-jpl/src/c/analyses/AdjointHorizAnalysis.cpp (revision 18055)
+@@ -899,6 +899,9 @@
+ void AdjointHorizAnalysis::GetSolutionFromInputs(Vector* solution,Element* element){/*{{{*/
+ _error_("not implemented yet");
+ }/*}}}*/
++void AdjointHorizAnalysis::GradientJ(Vector* gradient,int control_index){/*{{{*/
++ _error_("Not implemented yet");
++}/*}}}*/
+ void AdjointHorizAnalysis::InputUpdateFromSolution(IssmDouble* solution,Element* element){/*{{{*/
+ int approximation;
+ element->GetInputValue(&approximation,ApproximationEnum);
+Index: ../trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.cpp (revision 18054)
++++ ../trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.cpp (revision 18055)
+@@ -316,6 +316,9 @@
+ void HydrologyDCEfficientAnalysis::GetSolutionFromInputs(Vector* solution,Element* element){/*{{{*/
+ element->GetSolutionFromInputsOneDof(solution,EplHeadEnum);
+ }/*}}}*/
++void HydrologyDCEfficientAnalysis::GradientJ(Vector* gradient,int control_index){/*{{{*/
++ _error_("Not implemented yet");
++}/*}}}*/
+ void HydrologyDCEfficientAnalysis::InputUpdateFromSolution(IssmDouble* solution,Element* element){/*{{{*/
+
+ int domaintype,i;
+Index: ../trunk-jpl/src/c/analyses/MeltingAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/MeltingAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/MeltingAnalysis.h (revision 18055)
+@@ -26,6 +26,7 @@
+ ElementMatrix* CreateKMatrix(Element* element);
+ ElementVector* CreatePVector(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/GiaAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/GiaAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/GiaAnalysis.h (revision 18055)
+@@ -26,6 +26,7 @@
+ ElementMatrix* CreateKMatrix(Element* element);
+ ElementVector* CreatePVector(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/L2ProjectionEPLAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/L2ProjectionEPLAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/L2ProjectionEPLAnalysis.h (revision 18055)
+@@ -26,6 +26,7 @@
+ ElementMatrix* CreateKMatrix(Element* element);
+ ElementVector* CreatePVector(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp (revision 18054)
++++ ../trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp (revision 18055)
+@@ -307,6 +307,9 @@
+ void LevelsetAnalysis::GetSolutionFromInputs(Vector* solution,Element* element){/*{{{*/
+ _error_("not implemented yet");
+ }/*}}}*/
++void LevelsetAnalysis::GradientJ(Vector* gradient,int control_index){/*{{{*/
++ _error_("Not implemented yet");
++}/*}}}*/
+ void LevelsetAnalysis::InputUpdateFromSolution(IssmDouble* solution,Element* element){/*{{{*/
+
+ int domaintype;
+Index: ../trunk-jpl/src/c/analyses/StressbalanceVerticalAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/StressbalanceVerticalAnalysis.cpp (revision 18054)
++++ ../trunk-jpl/src/c/analyses/StressbalanceVerticalAnalysis.cpp (revision 18055)
+@@ -356,6 +356,9 @@
+ void StressbalanceVerticalAnalysis::GetSolutionFromInputs(Vector* solution,Element* element){/*{{{*/
+ element->GetSolutionFromInputsOneDof(solution,VzEnum);
+ }/*}}}*/
++void StressbalanceVerticalAnalysis::GradientJ(Vector* gradient,int control_index){/*{{{*/
++ _error_("Not implemented yet");
++}/*}}}*/
+ void StressbalanceVerticalAnalysis::InputUpdateFromSolution(IssmDouble* solution,Element* element){/*{{{*/
+
+ int numnodes = element->GetNumberOfNodes();
+Index: ../trunk-jpl/src/c/analyses/EnthalpyAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/EnthalpyAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/EnthalpyAnalysis.h (revision 18055)
+@@ -34,6 +34,7 @@
+ void GetBAdvec(IssmDouble* B,Element* element,IssmDouble* xyz_list,Gauss* gauss);
+ void GetBAdvecprime(IssmDouble* B,Element* element,IssmDouble* xyz_list,Gauss* gauss);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+
+Index: ../trunk-jpl/src/c/analyses/MeshdeformationAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/MeshdeformationAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/MeshdeformationAnalysis.h (revision 18055)
+@@ -26,6 +26,7 @@
+ ElementMatrix* CreateKMatrix(Element* element);
+ ElementVector* CreatePVector(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/ExtrudeFromTopAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/ExtrudeFromTopAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/ExtrudeFromTopAnalysis.h (revision 18055)
+@@ -30,6 +30,7 @@
+ ElementVector* CreatePVector(Element* element);
+ void GetB(IssmDouble* B,Element* element,int dim,IssmDouble* xyz_list,Gauss* gauss);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/SmoothedSurfaceSlopeYAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/SmoothedSurfaceSlopeYAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/SmoothedSurfaceSlopeYAnalysis.h (revision 18055)
+@@ -26,6 +26,7 @@
+ ElementMatrix* CreateKMatrix(Element* element);
+ ElementVector* CreatePVector(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/MeltingAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/MeltingAnalysis.cpp (revision 18054)
++++ ../trunk-jpl/src/c/analyses/MeltingAnalysis.cpp (revision 18055)
+@@ -150,6 +150,9 @@
+ void MeltingAnalysis::GetSolutionFromInputs(Vector* solution,Element* element){/*{{{*/
+ _error_("not implemented yet");
+ }/*}}}*/
++void MeltingAnalysis::GradientJ(Vector* gradient,int control_index){/*{{{*/
++ _error_("Not implemented yet");
++}/*}}}*/
+ void MeltingAnalysis::InputUpdateFromSolution(IssmDouble* solution,Element* element){/*{{{*/
+ element->InputUpdateFromSolutionOneDof(solution,BasalforcingsMeltingRateEnum);
+ }/*}}}*/
+Index: ../trunk-jpl/src/c/analyses/ExtrudeFromBaseAnalysis.cpp
+===================================================================
+--- ../trunk-jpl/src/c/analyses/ExtrudeFromBaseAnalysis.cpp (revision 18054)
++++ ../trunk-jpl/src/c/analyses/ExtrudeFromBaseAnalysis.cpp (revision 18055)
+@@ -221,6 +221,9 @@
+ void ExtrudeFromBaseAnalysis::GetSolutionFromInputs(Vector* solution,Element* element){/*{{{*/
+ _error_("not implemented yet");
+ }/*}}}*/
++void ExtrudeFromBaseAnalysis::GradientJ(Vector* gradient,int control_index){/*{{{*/
++ _error_("Not implemented yet");
++}/*}}}*/
+ void ExtrudeFromBaseAnalysis::InputUpdateFromSolution(IssmDouble* solution,Element* element){/*{{{*/
+
+ int inputenum;
+Index: ../trunk-jpl/src/c/analyses/HydrologyShreveAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/HydrologyShreveAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/HydrologyShreveAnalysis.h (revision 18055)
+@@ -26,6 +26,7 @@
+ ElementMatrix* CreateKMatrix(Element* element);
+ ElementVector* CreatePVector(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+
+Index: ../trunk-jpl/src/c/analyses/BalancethicknessSoftAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/BalancethicknessSoftAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/BalancethicknessSoftAnalysis.h (revision 18055)
+@@ -26,6 +26,7 @@
+ ElementMatrix* CreateKMatrix(Element* element);
+ ElementVector* CreatePVector(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/DepthAverageAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/DepthAverageAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/DepthAverageAnalysis.h (revision 18055)
+@@ -27,6 +27,7 @@
+ ElementVector* CreatePVector(Element* element);
+ void GetB(IssmDouble* B,Element* element,int dim,IssmDouble* xyz_list,Gauss* gauss);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ };
+Index: ../trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.h (revision 18055)
+@@ -27,6 +27,7 @@
+ ElementMatrix* CreateKMatrix(Element* element);
+ ElementVector* CreatePVector(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+
+Index: ../trunk-jpl/src/c/analyses/AdjointHorizAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/AdjointHorizAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/AdjointHorizAnalysis.h (revision 18055)
+@@ -32,6 +32,7 @@
+ ElementVector* CreatePVectorHO(Element* element);
+ ElementVector* CreatePVectorFS(Element* element);
+ void GetSolutionFromInputs(Vector* solution,Element* element);
++ void GradientJ(Vector* gradient,int control_index);
+ void InputUpdateFromSolution(IssmDouble* solution,Element* element);
+ void UpdateConstraints(FemModel* femmodel);
+ void InputUpdateFromSolutionHoriz(IssmDouble* solution,Element* element);
+Index: ../trunk-jpl/src/c/analyses/L2ProjectionBaseAnalysis.h
+===================================================================
+--- ../trunk-jpl/src/c/analyses/L2ProjectionBaseAnalysis.h (revision 18054)
++++ ../trunk-jpl/src/c/analyses/L2ProjectionBaseAnalysis.h (revision 18055)
+@@ -26,6 +26,7 @@
+ ElementMatrix* CreateKMatrix(Element* element);
+ ElementVector* CreatePVector(Element* element);
+ void GetSolutionFromInputs(Vector