Changeset 17931


Ignore:
Timestamp:
05/05/14 14:11:31 (11 years ago)
Author:
emilyle
Message:

New version of gui renderer including dropboxes

Location:
issm/trunk-jpl/src/m/classes
Files:
20 edited

Legend:

Unmodified
Added
Removed

  • issm/trunk-jpl/src/m/classes/balancethickness.m

    r17720 r17931  
    1717                        fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="spcthickness" type="',     class(obj.spcthickness),'" default="',        convert2str(obj.spcthickness),'">',       '     <section name="balancethickness" />','     <help> thickness constraints (NaN means no constraint) [m] </help>','</parameter>');
    1818            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="thickening_rate" type="',      class(obj.thickening_rate),'" default="',            convert2str(obj.thickening_rate),'">',     '     <section name="balancethickness" />','     <help> ice thickening rate used in the mass conservation (dh/dt) [m/yr] </help>','</parameter>');
    19             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n',        '<parameter key ="stabilization" type="',      class(obj.stabilization),'" default="',          convert2str(obj.stabilization),'">',     '     <section name="balancethickness" />','     <help> 0: None, 1: SU, 2: SSAs artificial diffusivity, 3:DG </help>','</parameter>');
     19           
     20            % balancethickness drop-down (1,2, or 3)
     21            fprintf(fid,'%s\n%s\n%s\n',        '<parameter key ="stabilization" type="alternative" optional="false">','     <section name="balancethickness" />','     <help> 0: None, 1: SU, 2: SSAs artificial diffusivity, 3:DG </help>');
     22            fprintf(fid,'%s\n','       <option value="1" type="string" default="true"> </option>');
     23            fprintf(fid,'%s\n','       <option value="2" type="string" default="false"> </option>');
     24            fprintf(fid,'%s\n%s\n','       <option value="3" type="string" default="false"> </option>','</parameter>');
    2025
    2126        end % }}}

  • issm/trunk-jpl/src/m/classes/damage.m

    r17906 r17931  
    7272            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',        '<parameter key ="max_damage" type="',     class(obj.max_damage),'" default="',         num2str(obj.max_damage),'">',            '     <section name="damage" />','     <help> maximum possible damage (0&amp;lt;=max_damage&amp;lt;1) </help>','</parameter>');
    7373             
    74             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="stabilization" type="',       class(obj.stabilization),'" default="',              num2str(obj.stabilization),'">',              '     <section name="damage" />','     <help> 0: no, 1: artificial_diffusivity, 2: SUPG </help>','</parameter>');
     74            % stabilization (0,1, or 2) drop-down
     75            fprintf(fid,'%s\n%s\n%s\n%s\n',    '<parameter key ="stabilization" type="alternative" optional="false">','     <section name="damage" />','     <help> 0: no, 1: artificial_diffusivity, 2: SUPG </help>');
     76            fprintf(fid, '%s\n', '       <option value="0" type="string" default="true"></option>');
     77            fprintf(fid, '%s\n', '       <option value="1" type="string" default="false"></option>');
     78            fprintf(fid, '%s\n', '       <option value="2" type="string" default="false"></option>');
     79            fprintf(fid, '%s\n','</parameter>');
     80           
    7581            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="maxiter" type="',             class(obj.maxiter),'" default="',   num2str(obj.maxiter),'">',   '     <section name="damage" />','     <help> maximum number of non linear iterations </help>','</parameter>');
    7682            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',        '<parameter key ="penalty_lock" type="',        class(obj.penalty_lock),'" default="',            num2str(obj.penalty_lock),'">',            '     <section name="damage" />','     <help> stabilize unstable damage constraints that keep zigzagging after n iteration (default is 0, no stabilization) </help>','</parameter>');

  • issm/trunk-jpl/src/m/classes/debug.m

    r17720 r17931  
    1414            fprintf(fid, '\n\n');
    1515            fprintf(fid, '%s\n', '<!-- Debug -->');
    16                          fprintf(fid,'%s%s%s\n%s\n%s%s%s\n%s\n%s\n',    '<parameter key ="valgrind" type="',              class(obj.valgrind),'" optional="false">',              '     <section name="debug" />','        <option value="',convert2str(obj.valgrind),'" type="string" default="true"></option>','     <help> use Valgrind to debug (0 or 1) </help>','</parameter>');
    17              fprintf(fid,'%s%s%s\n%s\n%s%s%s\n%s\n%s\n',    '<parameter key ="gprof" type="',              class(obj.gprof),'" optional="false">',              '     <section name="debug" />','        <option value="',convert2str(obj.gprof),'" type="string" default="true"></option>','     <help> use gnu-profiler to find out where the time is spent </help>','</parameter>');
    18              fprintf(fid,'%s%s%s\n%s\n%s%s%s\n%s\n',    '<parameter key ="profiling" type="',              class(obj.profiling),'" optional="false">',              '     <section name="debug" />','        <option value="',convert2str(obj.profiling),'" type="string" default="true"></option>','     <help> enables profiling (memory, flops, time) </help>','</parameter>');
     16           
     17            %valgrind drop-down (0 or 1)
     18                        fprintf(fid,'%s\n%s\n%s%s%s\n%s\n%s\n',    '<parameter key ="valgrind" type="alternative" optional="false">','     <section name="debug" />','     <help> use Valgrind to debug (0 or 1) </help>');
     19            fprintf(fid,'%s\n','       <option value="0" type="string" default="true"> </option>');
     20            fprintf(fid,'%s\n%s\n','       <option value="1" type="string" default="false"> </option>','</parameter>');
     21         
     22            fprintf(fid,'%s%s%s\n%s\n%s%s%s\n%s\n%s\n',    '<parameter key ="gprof" type="',              class(obj.gprof),'" optional="false">',              '     <section name="debug" />','        <option value="',convert2str(obj.gprof),'" type="string" default="true"></option>','     <help> use gnu-profiler to find out where the time is spent </help>','</parameter>');
     23            fprintf(fid,'%s%s%s\n%s\n%s%s%s\n%s\n',    '<parameter key ="profiling" type="',              class(obj.profiling),'" optional="false">',              '     <section name="debug" />','        <option value="',convert2str(obj.profiling),'" type="string" default="true"></option>','     <help> enables profiling (memory, flops, time) </help>','</parameter>');
    1924        end % }}}
    2025                function obj = debug(varargin) % {{{

  • issm/trunk-jpl/src/m/classes/flowequation.m

    r17720 r17931  
    7070           
    7171            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="isFS" type="',       class(obj.isFS),'" default="',              convert2str(obj.isFS),'">',              '     <section name="flowequation" />','     <help> are the Full-FS (FS) equations used ? </help>','</parameter>');
    72             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="fe_SSA" type="',             class(obj.fe_SSA),'" default="',   convert2str(obj.fe_SSA),'">',   '     <section name="flowequation" />','     <help> Finite Element for SSA  "P1", "P1bubble" "P1bubblecondensed" "P2" </help>','</parameter>');
    73             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',        '<parameter key ="fe_HO" type="',        class(obj.fe_HO),'" default="',            convert2str(obj.fe_HO),'">',            '     <section name="flowequation" />','     <help> Finite Element for HO   "P1" "P1bubble" "P1bubblecondensed" "P1xP2" "P2xP1" "P2" </help>','</parameter>');
    74             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',        '<parameter key ="fe_FS" type="',   class(obj.fe_FS),'" default="',            convert2str(obj.fe_FS),'">',            '     <section name="flowequation" />','     <help> Finite Element for FS   "P1P1" (debugging only) "P1P1GLS" "MINIcondensed" "MINI" "TaylorHood" </help>','</parameter>');
     72           
     73            % fe_SSA drop-down (P1, P1bubble, P1bubblecondensed, P2)
     74            fprintf(fid,'%s\n%s\n%s\n%s\n',    '<parameter key ="fe_SSA" type="alternative" optional="false">','     <section name="flowequation" />','     <help> Finite Element for SSA  "P1", "P1bubble" "P1bubblecondensed" "P2" </help>');
     75            fprintf(fid,'%s\n','       <option value="P1" type="string" default="true"> </option>');
     76            fprintf(fid,'%s\n','       <option value="P1bubble" type="string" default="false"> </option>');
     77            fprintf(fid,'%s\n','       <option value="P1bubblecondensed" type="string" default="false"> </option>');
     78            fprintf(fid,'%s\n%s\n','       <option value="P2" type="string" default="false"> </option>','</parameter>');
     79           
     80            %fe_HO drop-down (P1, P1bubble, P1bubblecondensed, P1xP2, P2xP1, P2)
     81            fprintf(fid,'%s\n%s\n%s\n%s\n',        '<parameter key ="fe_HO" type="alternative" optional="false">','     <section name="flowequation" />','     <help> Finite Element for HO   "P1" "P1bubble" "P1bubblecondensed" "P1xP2" "P2xP1" "P2" </help>');
     82            fprintf(fid,'%s\n','       <option value="P1" type="string" default="true"> </option>');
     83            fprintf(fid,'%s\n','       <option value="P1bubble" type="string" default="false"> </option>');
     84            fprintf(fid,'%s\n','       <option value="P1bubblecondensed" type="string" default="false"> </option>');
     85            fprintf(fid,'%s\n','       <option value="P1xP2" type="string" default="false"> </option>');
     86            fprintf(fid,'%s\n','       <option value="P2xP1" type="string" default="false"> </option>');
     87            fprintf(fid,'%s\n%s\n','       <option value="P2" type="string" default="false"> </option>','</parameter>');
     88           
     89            % fe_FS drop-down (P1P1, P1P1GLS, MINIcondensed, MINI, TaylowHood)
     90            fprintf(fid,'%s\n%s\n%s\n%s\n',        '<parameter key ="fe_FS" type="alternative" optional="false">','     <section name="flowequation" />','     <help> Finite Element for FS   "P1P1" (debugging only) "P1P1GLS" "MINIcondensed" "MINI" "TaylorHood" </help>');
     91            fprintf(fid,'%s\n','       <option value="P1P1" type="string" default="true"> </option>');
     92            fprintf(fid,'%s\n','       <option value="P1P1GLS" type="string" default="false"> </option>');
     93            fprintf(fid,'%s\n','       <option value="MINIcondensed" type="string" default="false"> </option>');
     94            fprintf(fid,'%s\n','       <option value="MINI" type="string" default="false"> </option>');
     95            fprintf(fid,'%s\n%s\n','       <option value="TaylorHood" type="string" default="false"> </option>','</parameter>');
     96           
    7597            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',        '<parameter key ="vertex_equation" type="',      class(obj.vertex_equation),'" default="',            convert2str(obj.vertex_equation),'">',            '     <section name="flowequation" />','     <help> flow equation for each vertex </help>','</parameter>');
    7698       

  • issm/trunk-jpl/src/m/classes/geometry.m

    r17720 r17931  
    3333        end
    3434        methods
    35         function createxml(obj,fid) % {{{
     35        %function createxml(obj,fid)
     36        function createxml(obj, fid)% {{{
    3637            fprintf(fid, '\n\n');
    3738            fprintf(fid, '%s\n', '<!-- geometry -->');
    … …  
    4041            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','<parameter key ="thickness" type="','path','" optional="','false','">','     <section name="geometry" />','     <help> ice thickness [m] </help>','</parameter>');
    4142            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','<parameter key ="bed" type="','path','" optional="','false','">','     <section name="geometry" />','     <help> bed elevation [m] </help>','</parameter>');
    42             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','<parameter key ="bathymetry" type="',class(obj.bathymetry),'" default="',convert2str(obj.bathymetry),'">','     <section name="geometry" />','     <help> bathymetry elevation [m] </help>','</parameter>');
     43            %fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','<parameter key ="bathymetry" type="',class(obj.bathymetry),'" default="',convert2str(obj.bathymetry),'">','     <section name="geometry" />','     <help> bathymetry elevation [m] </help>','</parameter>');
    4344            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','<parameter key ="hydrostatic_ratio" type="',class(obj.hydrostatic_ratio),'" default="',convert2str(obj.hydrostatic_ratio),'">','     <section name="geometry" />','     <help> coefficient for ice shelves; thickness correction: hydrostatic_ratio H_obs+ (1-hydrostatic_ratio) H_hydro </help>','</parameter>');
    4445            fprintf(fid,'%s\n%s\n','</frame>');

  • issm/trunk-jpl/src/m/classes/gia.m

    r17720 r17931  
    1818            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="mantle_viscosity" type="',class(obj.mantle_viscosity),'" default="',convert2str(obj.mantle_viscosity),'">','     <section name="gia" />','     <help> mantle viscosity[Pa s] </help>','  </parameter>');
    1919            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lithosphere_thickness" type="',class(obj.lithosphere_thickness),'" default="',convert2str(obj.lithosphere_thickness),'">','     <section name="gia" />','     <help> lithosphere thickness (km) </help>','  </parameter>');
    20             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="cross_section_shape" type="',class(obj.cross_section_shape),'" default="',convert2str(obj.cross_section_shape),'">','     <section name="gia" />','     <help> 1: square-edged (default). 2: elliptical.  See iedge in GiaDeflectionCore </help>','  </parameter>');
     20            %cross_section_shape drop-down (1 o r 2)
     21            fprintf(fid,'%s\n%s\n%s\n%s\n','  <parameter key ="cross_section_shape" type="alternative" optional="false">','     <section name="gia" />','     <help> 1: square-edged (default). 2: elliptical.  See iedge in GiaDeflectionCore </help>');
     22            fprintf(fid,'%s\n','       <option value="1" type="string" default="true"> </option>');
     23            fprintf(fid,'%s\n%s\n','       <option value="2" type="string" default="false"> </option>','</parameter>');
     24           
    2125            fprintf(fid,'%s\n%s\n','</frame>');   
    2226       

  • issm/trunk-jpl/src/m/classes/groundingline.m

    r17720 r17931  
    1616            % Convergence criteria         
    1717            fprintf(fid,'%s\n%s\n%s\n','<frame key="1" label="Grounding line migration parameters">','<section name="groundingline" />'); 
    18                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="migration" type="',      class(obj.migration),'" default="',        convert2str(obj.migration),'">',       '     <section name="groundingline" />','     <help> type of grounding line migration: "SoftMigration","AgressiveMigration" or "None" </help>','</parameter>');
     18                       
     19            % migration (SoftMigration, AggressiveMigration, or None)drop-down
     20            fprintf(fid,'%s\n%s\n%s\n%s\n','<parameter key ="migration" type="alternative" optional="false">','     <section name="groundingline" />','     <help> type of grounding line migration: "SoftMigration","AgressiveMigration" or "None" </help>');
     21            fprintf(fid,'%s\n','       <option value="SoftMigration" type="string" default="true"> </option>');
     22            fprintf(fid,'%s\n','       <option value="AggressiveMigration" type="string" default="false"> </option>');
     23            fprintf(fid, '%s\n%s\n','       <option value="None" type="string" default="false"></option>','</parameter>');
     24
    1925            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n',    '<parameter key ="melting_rate" type="',          class(obj.melting_rate),'" default="',            convert2str(obj.melting_rate),'">',     '     <section name="groundingline" />','     <help> melting rate applied when previously grounded parts start floating [m/yr] </help>','</parameter>');
    2026            fprintf(fid,'%s\n%s\n','</frame>');

  • issm/trunk-jpl/src/m/classes/inversion.m

    r17920 r17931  
    2525        end
    2626        methods
    27                 function createxml(obj,fid) % {{{
    28                         fprintf(fid, '<!-- inversion -->\n');           
    29 
    30                         % inversion parameters
    31                         fprintf(fid,'%s\n%s\n%s\n','<frame key="1" label="inversion parameters">','<section name="inversion" />');                   
    32                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="iscontrol" type="',class(obj.iscontrol),'" default="',convert2str(obj.iscontrol),'">','     <section name="inversion" />','     <help> is inversion activated? </help>','  </parameter>');
    33                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="incomplete_adjoint" type="',class(obj.incomplete_adjoint),'" default="',convert2str(obj.incomplete_adjoint),'">','     <section name="inversion" />','     <help> 1: linear viscosity, 0: non-linear viscosity </help>','  </parameter>');
    34                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="control_parameters" type="',class(obj.control_parameters),'" default="',convert2str(obj.control_parameters),'">','     <section name="inversion" />','     <help> ex: {''FrictionCoefficient''}, or {''MaterialsRheologyBbar''} </help>','  </parameter>');
    35 
    36                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="nsteps" type="',class(obj.nsteps),'" default="',convert2str(obj.nsteps),'">','     <section name="inversion" />','     <help> number of optimization searches </help>','  </parameter>');
    37                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="cost_functions" type="',class(obj.cost_functions),'" default="',convert2str(obj.cost_functions),'">','     <section name="inversion" />','     <help> indicate the type of response for each optimization step  </help>','  </parameter>');
    38                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="cost_functions_coefficients" type="',class(obj.cost_functions_coefficients),'" default="',convert2str(obj.cost_functions_coefficients),'">','     <section name="inversion" />','     <help> cost_functions_coefficients applied to the misfit of each vertex and for each control_parameter </help>','  </parameter>');
    39 
    40                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="cost_function_threshold" type="',class(obj.cost_function_threshold),'" default="',convert2str(obj.cost_function_threshold),'">','     <section name="inversion" />','     <help> misfit convergence criterion. Default is 1%, NaN if not applied </help>','  </parameter>');
    41                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="maxiter_per_step" type="',class(obj.maxiter_per_step),'" default="',convert2str(obj.maxiter_per_step),'">','     <section name="inversion" />','     <help> maximum iterations during each optimization step  </help>','  </parameter>');
    42                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="gradient_scaling" type="',class(obj.gradient_scaling),'" default="',convert2str(obj.gradient_scaling),'">','     <section name="inversion" />','     <help> scaling factor on gradient direction during optimization, for each optimization step </help>','  </parameter>');
    43 
    44                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="step_threshold" type="',class(obj.step_threshold),'" default="',convert2str(obj.step_threshold),'">','     <section name="inversion" />','     <help> decrease threshold for misfit, default is 30% </help>','  </parameter>');
    45                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="min_parameters" type="',class(obj.min_parameters),'" default="',convert2str(obj.min_parameters),'">','     <section name="inversion" />','     <help> absolute minimum acceptable value of the inversed parameter on each vertex </help>','  </parameter>');
    46                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="max_parameters" type="',class(obj.max_parameters),'" default="',convert2str(obj.max_parameters),'">','     <section name="inversion" />','     <help> absolute maximum acceptable value of the inversed parameter on each vertex </help>','  </parameter>');
    47 
    48                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vx_obs" type="',class(obj.vx_obs),'" default="',convert2str(obj.vx_obs),'">','     <section name="inversion" />','     <help> observed velocity x component [m/yr] </help>','  </parameter>');
    49                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vy_obs" type="',class(obj.vy_obs),'" default="',convert2str(obj.vy_obs),'">','     <section name="inversion" />','     <help> observed velocity y component [m/yr]  </help>','  </parameter>');
    50                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vel_obs" type="',class(obj.vel_obs),'" default="',convert2str(obj.vel_obs),'">','     <section name="inversion" />','     <help> observed velocity magnitude [m/yr] </help>','  </parameter>');
    51                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="thickness_obs" type="',class(obj.thickness_obs),'" default="',convert2str(obj.thickness_obs),'">','     <section name="inversion" />','     <help> observed thickness [m]) </help>','  </parameter>');
    52 
    53                         fprintf(fid,'%s\n%s\n','</frame>');   
    54 
    55                         fprintf(fid,'%s\n%s\n%s\n','<frame key="2" label="Available cost functions">','<section name="inversion" />');                   
    56                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceAbsVelMisfit" type="','string','" default="','101','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
    57                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceRelVelMisfit" type="','string','" default="','102','">','     <section name="inversion" />','     <help>   </help>','  </parameter>');
    58                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceLogVelMisfit" type="','string','" default="','103','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
    59 
    60                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceLogVxVyMisfit" type="','string','" default="','104','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
    61                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceAverageVelMisfit" type="','string','" default="','105','">','     <section name="inversion" />','     <help>   </help>','  </parameter>');
    62                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="ThicknessAbsMisfit" type="','string','" default="','106','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
    63 
    64                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="DragCoefficientAbsGradient" type="','string','" default="','107','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
    65                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="RheologyBbarAbsGradient" type="','string','" default="','108','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
    66                         fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="ThicknessAbsGradient" type="','string','" default="','109','">','     <section name="inversion" />','     <help> </help>','  </parameter>');
    67 
    68                         fprintf(fid,'%s\n%s\n','</frame>');   
    69 
    70                 end % }}}       
     27         function createxml(obj,fid) % {{{
     28            fprintf(fid, '<!-- inversion -->\n');           
     29                   
     30            % inversion parameters
     31            fprintf(fid,'%s\n%s\n%s\n','<frame key="1" label="inversion parameters">','<section name="inversion" />');                   
     32            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="iscontrol" type="',class(obj.iscontrol),'" default="',convert2str(obj.iscontrol),'">','     <section name="inversion" />','     <help> is inversion activated? </help>','  </parameter>');
     33           
     34            % incompleteadjoing drop-down (0 or 1)
     35            fprintf(fid,'%s\n%s\n%s\n%s\n','  <parameter key ="incomplete_adjoint" type="alternative" optional="false">','     <section name="inversion" />','     <help> 1: linear viscosity, 0: non-linear viscosity </help>');
     36            fprintf(fid,'%s\n','       <option value="0" type="string" default="true"> </option>');
     37            fprintf(fid,'%s\n%s\n','       <option value="1" type="string" default="false"> </option>','</parameter>');
     38           
     39            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="control_parameters" type="',class(obj.control_parameters),'" default="',convert2str(obj.control_parameters),'">','     <section name="inversion" />','     <help> ex: {''FrictionCoefficient''}, or {''MaterialsRheologyBbar''} </help>','  </parameter>');
     40               
     41            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="nsteps" type="',class(obj.nsteps),'" default="',convert2str(obj.nsteps),'">','     <section name="inversion" />','     <help> number of optimization searches </help>','  </parameter>');
     42            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="cost_functions" type="',class(obj.cost_functions),'" default="',convert2str(obj.cost_functions),'">','     <section name="inversion" />','     <help> indicate the type of response for each optimization step  </help>','  </parameter>');
     43            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="cost_functions_coefficients" type="',class(obj.cost_functions_coefficients),'" default="',convert2str(obj.cost_functions_coefficients),'">','     <section name="inversion" />','     <help> cost_functions_coefficients applied to the misfit of each vertex and for each control_parameter </help>','  </parameter>');
     44               
     45            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="cost_function_threshold" type="',class(obj.cost_function_threshold),'" default="',convert2str(obj.cost_function_threshold),'">','     <section name="inversion" />','     <help> misfit convergence criterion. Default is 1%, NaN if not applied </help>','  </parameter>');
     46            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="maxiter_per_step" type="',class(obj.maxiter_per_step),'" default="',convert2str(obj.maxiter_per_step),'">','     <section name="inversion" />','     <help> maximum iterations during each optimization step  </help>','  </parameter>');
     47            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="gradient_scaling" type="',class(obj.gradient_scaling),'" default="',convert2str(obj.gradient_scaling),'">','     <section name="inversion" />','     <help> scaling factor on gradient direction during optimization, for each optimization step </help>','  </parameter>');
     48               
     49            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="step_threshold" type="',class(obj.step_threshold),'" default="',convert2str(obj.step_threshold),'">','     <section name="inversion" />','     <help> decrease threshold for misfit, default is 30% </help>','  </parameter>');
     50            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="min_parameters" type="',class(obj.min_parameters),'" default="',convert2str(obj.min_parameters),'">','     <section name="inversion" />','     <help> absolute minimum acceptable value of the inversed parameter on each vertex </help>','  </parameter>');
     51            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="max_parameters" type="',class(obj.max_parameters),'" default="',convert2str(obj.max_parameters),'">','     <section name="inversion" />','     <help> absolute maximum acceptable value of the inversed parameter on each vertex </help>','  </parameter>');
     52               
     53            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vx_obs" type="',class(obj.vx_obs),'" default="',convert2str(obj.vx_obs),'">','     <section name="inversion" />','     <help> observed velocity x component [m/yr] </help>','  </parameter>');
     54            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vy_obs" type="',class(obj.vy_obs),'" default="',convert2str(obj.vy_obs),'">','     <section name="inversion" />','     <help> observed velocity y component [m/yr]  </help>','  </parameter>');
     55            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vel_obs" type="',class(obj.vel_obs),'" default="',convert2str(obj.vel_obs),'">','     <section name="inversion" />','     <help> observed velocity magnitude [m/yr] </help>','  </parameter>');
     56            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="thickness_obs" type="',class(obj.thickness_obs),'" default="',convert2str(obj.thickness_obs),'">','     <section name="inversion" />','     <help> observed thickness [m]) </help>','  </parameter>');
     57               
     58            fprintf(fid,'%s\n%s\n','</frame>');   
     59           
     60            fprintf(fid,'%s\n%s\n%s\n','<frame key="2" label="Available cost functions">','<section name="inversion" />');                   
     61            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceAbsVelMisfit" type="','string','" default="','101','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
     62            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceRelVelMisfit" type="','string','" default="','102','">','     <section name="inversion" />','     <help>   </help>','  </parameter>');
     63            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceLogVelMisfit" type="','string','" default="','103','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
     64               
     65            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceLogVxVyMisfit" type="','string','" default="','104','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
     66            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="SurfaceAverageVelMisfit" type="','string','" default="','105','">','     <section name="inversion" />','     <help>   </help>','  </parameter>');
     67            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="ThicknessAbsMisfit" type="','string','" default="','106','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
     68               
     69            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="DragCoefficientAbsGradient" type="','string','" default="','107','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
     70            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="RheologyBbarAbsGradient" type="','string','" default="','108','">','     <section name="inversion" />','     <help>  </help>','  </parameter>');
     71            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="ThicknessAbsGradient" type="','string','" default="','109','">','     <section name="inversion" />','     <help> </help>','  </parameter>');
     72               
     73            fprintf(fid,'%s\n%s\n','</frame>');   
     74       
     75        end % }}}       
    7176                function obj = inversion(varargin) % {{{
    7277                        switch nargin

  • issm/trunk-jpl/src/m/classes/masstransport.m

    r17720 r17931  
    5252            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="isfreesurface" type="',class(obj.isfreesurface),'" default="',convert2str(obj.isfreesurface),'">','     <section name="masstransport" />','     <help> do we use free surfaces (FS only) are mass conservation </help>','  </parameter>');
    5353            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="min_thickness" type="',class(obj.min_thickness),'" default="',convert2str(obj.min_thickness),'">','     <section name="masstransport" />','     <help> minimum ice thickness allowed [m] </help>','  </parameter>');
    54             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="hydrostatic_adjustment" type="',class(obj.hydrostatic_adjustment),'" default="',convert2str(obj.hydrostatic_adjustment),'">','     <section name="masstransport" />','     <help> adjustment of ice shelves surface and bed elevations: ''Incremental'' or ''Absolute''  </help>','  </parameter>');
    55             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="stabilization" type="',class(obj.stabilization),'" default="',convert2str(obj.stabilization),'">','     <section name="masstransport" />','     <help> 0: no, 1:  artificial_diffusivity, 2: streamline upwinding, 3: discontinuous Galerkin </help>','  </parameter>');
     54           
     55            % hydrostatic_adjustment drop-down (incremental or absolute )
     56            fprintf(fid,'%s\n%s\n%s\n%s\n','  <parameter key ="hydrostatic_adjustment" type="alternative" optional ="false">','     <section name="masstransport" />','     <help> adjustment of ice shelves surface and bed elevations: ''Incremental'' or ''Absolute''  </help>');
     57            fprintf(fid,'%s\n','       <option value="Incremental" type="string" default="true"> </option>');
     58            fprintf(fid,'%s\n%s\n','       <option value="Absolute" type="string" default="false"> </option>','</parameter>');
     59           
     60            %stabilization drop-down (0, 1, 2, or 3)
     61            fprintf(fid,'%s\n%s\n%s\n%s\n','  <parameter key ="stabilization" type="alternative" optional="false">','     <section name="masstransport" />','     <help> 0: no, 1:  artificial_diffusivity, 2: streamline upwinding, 3: discontinuous Galerkin </help>');
     62            fprintf(fid,'%s\n','       <option value="0" type="string" default="true"> </option>');
     63            fprintf(fid,'%s\n','       <option value="1" type="string" default="false"> </option>');
     64            fprintf(fid,'%s\n','       <option value="2" type="string" default="false"> </option>');
     65            fprintf(fid,'%s\n%s\n','       <option value="3" type="string" default="false"> </option>','</parameter>');
     66
    5667            fprintf(fid,'%s\n%s\n','</frame>');   
    5768           

  • issm/trunk-jpl/src/m/classes/matice.m

    r17720 r17931  
    5555             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','<parameter key ="rheology_B" type="',class(obj.rheology_B),'" default="',convert2str(obj.rheology_B),'">','     <section name="materials" />','     <help> flow law parameter [Pa/s^(1/n)] </help>','</parameter>');
    5656             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','<parameter key ="rheology_n" type="',class(obj.rheology_n),'" default="',convert2str(obj.rheology_n),'">','     <section name="materials" />','     <help> Glens flow law exponent </help>','</parameter>');
    57              fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','<parameter key ="rheology_law" type="',class(obj.rheology_law),'" default="',convert2str(obj.rheology_law),'">','     <section name="materials" />','     <help> law for the temperature dependance of the rheology: "None", "Paterson",  "Arrhenius" or "LliboutryDuval" </help>','</parameter>');
     57             
     58             % rheology_law drop-down
     59             fprintf(fid,'%s\n%s\n%s\n%s\n','<parameter key ="rheology_law" type="alternative" optional="false">','     <section name="materials" />','     <help> law for the temperature dependance of the rheology: "None", "Paterson",  "Arrhenius" or "LliboutryDuval" </help>');
     60             fprintf(fid,'%s\n','       <option value="None" type="string" default="true"> </option>');
     61             fprintf(fid,'%s\n','       <option value="Paterson" type="string" default="false"> </option>');
     62             fprintf(fid,'%s\n','       <option value="Arrhenius" type="string" default="false"> </option>');
     63             fprintf(fid,'%s\n%s\n','       <option value="LliboutryDuval" type="string" default="false"> </option>','</parameter>');
     64             
    5865             
    5966             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','<parameter key ="lithosphere_shear_modulus" type="',class(obj.lithosphere_shear_modulus),'" default="',convert2str(obj.lithosphere_shear_modulus),'">','     <section name="materials" />','     <help> Lithosphere shear modulus [Pa] </help>','</parameter>');

  • issm/trunk-jpl/src/m/classes/mesh2d.m

    r17831 r17931  
    105105                end % }}}
    106106        function createxml(obj,fid) % {{{
    107             fprintf(fid, '<!-- mesh -->\n');
     107            fprintf(fid, '<!-- 2D tria Mesh (horizontal) -->\n');
    108108           
    109             % drop-down
    110             fprintf(fid,'%s%s%s%s%s\n%s\n','<parameter key ="Dimension" type="','alternative','" optional="','false','">','     <section name="mesh" />');
    111            
    112                 % dimension=0
    113                 fprintf(fid,'%s%s%s%s%s\n%s\n','     <option value="0" type="','string','" default="','true','">','        <help> dimension is 0 </help>');
    114                 % footer for dim=0
    115                 fprintf(fid,'%s\n%s\n','     </option>');
    116 
    117                 % dimension=3
    118                 fprintf(fid,'%s%s%s\n%s\n','     <option value="3" type="','string','">','        <help> dimension is 3 </help>');
    119 
    120                     fprintf(fid,'       <!-- Elements and vertices of the original 2d mesh -->\n');
    121                     %fprintf(fid,'%s\n%s\n%s\n','       <frame key="dim=3" label="Elements and vertices of the original 2d mesh">','       <section name="mesh" />');
    122                     fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="x2d" type="',class(obj.x2d),'" default="',convert2str(obj.x2d),'">','              <help> vertices x coordinate [m] </help>','          </parameter>');
    123                     fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="y2d" type="',class(obj.y2d),'" default="',convert2str(obj.y2d),'">','              <help> vertices y coordinate [m] </help>','          </parameter>');
    124                     fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="elements2d" type="',class(obj.elements2d),'" default="',convert2str(obj.elements2d),'">','              <help> vertex indices of the mesh elements </help>','          </parameter>');
    125                     fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofvertices2d" type="',class(obj.numberofvertices2d),'" default="',convert2str(obj.numberofvertices2d),'">','              <help> number of vertices </help>','          </parameter>');
    126                     fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofelements2d" type="',class(obj.numberofelements2d),'" default="',convert2str(obj.numberofelements2d),'">','              <help> number of elements </help>','          </parameter>');
    127                     %fprintf(fid,'%s\n%s\n','       </frame>');
    128                 % footer for dim=3
    129                 fprintf(fid,'%s\n%s\n','     </option>');   
    130            
    131             % footer for drop-down
    132             fprintf(fid,'%s\n%s\n%s','     <help> select a mesh dimension 0(default) or 3 </help>','</parameter>');
    133            
    134                    
    135             % elements and vertices
    136             fprintf(fid,'%s\n%s\n%s\n','<frame key="1" label="Elements and vertices">','<section name="mesh" />');                   
    137             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="numberofelements" type="',class(obj.numberofelements),'" default="',convert2str(obj.numberofelements),'">','     <section name="mesh" />','     <help> number of elements </help>','  </parameter>');
    138             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="numberofvertices" type="',class(obj.numberofvertices),'" default="',convert2str(obj.numberofvertices),'">','     <section name="mesh" />','     <help> number of verticies </help>','  </parameter>');
    139             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elements" type="',class(obj.elements),'" default="',convert2str(obj.elements),'">','     <section name="mesh" />','     <help> vertex indices of the mesh elements </help>','  </parameter>');
     109            %elements and vertices
     110            fprintf(fid,'%s\n%s\n%s\n','<frame key="1" label="Elements and vertices">','<section name="mesh" />');
     111            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','  <parameter key ="numberofelements" type="',class(obj.numberofelements),'" default="',convert2str(obj.numberofelements),'">','     <section name="mesh" />','     <help> number of elements </help>','  </parameter>');
     112            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','  <parameter key ="numberofvertices" type="',class(obj.numberofvertices),'" default="',convert2str(obj.numberofvertices),'">','     <section name="mesh" />','     <help> number of vertices </help>','  </parameter>');
     113            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','  <parameter key ="elements" type="',class(obj.elements),'" default="',convert2str(obj.elements),'">','     <section name="mesh" />','     <help> vertex indices of the mesh elements </help>','  </parameter>');
    140114            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="x" type="',class(obj.x),'" default="',convert2str(obj.x),'">','     <section name="mesh" />','     <help> vertices x coordinate [m] </help>','  </parameter>');
    141115            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="y" type="',class(obj.y),'" default="',convert2str(obj.y),'">','     <section name="mesh" />','     <help> vertices y coordinate [m] </help>','  </parameter>');
    142                     fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="z" type="',class(obj.z),'" default="',convert2str(obj.z),'">','     <section name="mesh" />','     <help> vertices z coordinate [m] </help>','  </parameter>');
    143116            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="edges" type="',class(obj.edges),'" default="',convert2str(obj.edges),'">','     <section name="mesh" />','     <help> edges of the 2d mesh (vertex1 vertex2 element1 element2) </help>','  </parameter>');
    144117            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="numberofedges" type="',class(obj.numberofedges),'" default="',convert2str(obj.numberofedges),'">','     <section name="mesh" />','     <help> number of edges of the 2d mesh </help>','  </parameter>');
    145118            fprintf(fid,'%s\n%s\n','</frame>');
    146             
     119     
    147120            % properties
    148121            fprintf(fid,'%s\n%s\n%s\n','<frame key="2" label="Properties">','<section name="mesh" />');             
    149             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="selected dimension" type="',class(obj.dimension),'" default="',convert2str(obj.dimension),'">','     <section name="mesh" />','     <help> mesh dimension </help>','  </parameter>');
    150             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="numberoflayers" type="',class(obj.numberoflayers),'" default="',convert2str(obj.numberoflayers),'">','     <section name="mesh" />','     <help> number of extrusion layers </help>','  </parameter>');
    151             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonbed" type="',class(obj.vertexonbed),'" default="',convert2str(obj.vertexonbed),'">','     <section name="mesh" />','     <help> lower vertices flags list </help>','  </parameter>');
    152             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elementonbed" type="',class(obj.elementonbed),'" default="',convert2str(obj.elementonbed),'">','     <section name="mesh" />','     <help> lower elements flags list </help>','  </parameter>');
    153             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonsurface" type="',class(obj.vertexonsurface),'" default="',convert2str(obj.vertexonsurface),'">','     <section name="mesh" />','     <help> upper vertices flags list </help>','  </parameter>');
    154             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elementonsurface" type="',class(obj.elementonsurface),'" default="',convert2str(obj.elementonsurface),'">','     <section name="mesh" />','     <help> upper element flag list </help>','  </parameter>');
    155             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="uppervertex" type="',class(obj.uppervertex),'" default="',convert2str(obj.uppervertex),'">','     <section name="mesh" />','     <help> upper vertex list (NaN for vertex on the upper surface) </help>','  </parameter>');
    156             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="upperelements" type="',class(obj.upperelements),'" default="',convert2str(obj.upperelements),'">','     <section name="mesh" />','     <help> upper element list (NaN for element on the upper layer) </help>','  </parameter>');
    157             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lowervertex" type="',class(obj.lowervertex),'" default="',convert2str(obj.lowervertex),'">','     <section name="mesh" />','     <help> lower vertex list (NaN for vertex on the lower surface) </help>','  </parameter>');
    158             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lowerelements" type="',class(obj.lowerelements),'" default="',convert2str(obj.lowerelements),'">','     <section name="mesh" />','     <help> lower element list (NaN for element on the lower layer </help>','  </parameter>');
    159122            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonboundary" type="',class(obj.vertexonboundary),'" default="',convert2str(obj.vertexonboundary),'">','     <section name="mesh" />','     <help> vertices on the boundary of the domain flag list </help>','  </parameter>');
    160123            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="segments" type="',class(obj.segments),'" default="',convert2str(obj.segments),'">','     <section name="mesh" />','     <help> edges on domain boundary (vertex1 vertex2 element) </help>','  </parameter>');
    … …  
    175138            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lat" type="',class(obj.lat),'" default="',convert2str(obj.lat),'">','     <section name="mesh" />','     <help> vertices latitude [degrees] </help>','  </parameter>');
    176139            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="long" type="',class(obj.long),'" default="',convert2str(obj.long),'">','     <section name="mesh" />','     <help> verticies longitude [degrees] </help>','  </parameter>');
    177             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','  <parameter key ="hemisphere" type="',class(obj.hemisphere),'" default="',convert2str(obj.hemisphere),'">','     <section name="mesh" />','     <help> Indicate hemisphere ''n'' or ''s'' </help>','  </parameter>');
     140            % choice (hemisphere) 'n' or 's'
     141            fprintf(fid,'%s\n%s\n%s\n','  <parameter key ="hemisphere" type="alternative" optional="false">','     <section name="mesh" />','     <help> Indicate hemisphere ''n'' or ''s'' </help>');
     142            fprintf(fid,'%s\n','       <option value="n" type="string" default="true"> </option>');
     143            fprintf(fid,'%s\n','       <option value="s" type="string" default="false"> </option>');
     144            fprintf(fid,'%s\n','  </parameter>');
    178145            fprintf(fid,'%s\n%s\n','</frame>');
    179146       

  • issm/trunk-jpl/src/m/classes/mesh2dvertical.m

    r17700 r17931  
    2929        end
    3030        methods
     31                function createxml(obj,fid) % {{{
     32            fprintf(fid, '<!-- 2d Mesh (Vertical) -->\n');
     33           
     34            %elements and vertices
     35            fprintf(fid,'%s\n%s\n%s\n','       <frame key="1" label="Elements and vertices">','       <section name="mesh" />');
     36            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofelements" type="',class(obj.numberofelements),'" default="',convert2str(obj.numberofelements),'">','              <help> number of elements </help>','          </parameter>');
     37            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofvertices" type="',class(obj.numberofvertices),'" default="',convert2str(obj.numberofvertices),'">','              <help> number of vertices </help>','          </parameter>');
     38            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="elements" type="',class(obj.elements),'" default="',convert2str(obj.elements),'">','              <help> vertex indices of the mesh elements </help>','          </parameter>');
     39            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="x" type="',class(obj.x),'" default="',convert2str(obj.x),'">','     <section name="mesh" />','     <help> vertices x coordinate [m] </help>','  </parameter>');
     40            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="y" type="',class(obj.y),'" default="',convert2str(obj.y),'">','     <section name="mesh" />','     <help> vertices y coordinate [m] </help>','  </parameter>');
     41            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="edges" type="',class(obj.edges),'" default="',convert2str(obj.edges),'">','     <section name="mesh" />','     <help> edges of the 2d mesh (vertex1 vertex2 element1 element2) </help>','  </parameter>');
     42            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="numberofedges" type="',class(obj.numberofedges),'" default="',convert2str(obj.numberofedges),'">','     <section name="mesh" />','     <help> number of edges of the 2d mesh </help>','  </parameter>');
     43            fprintf(fid,'%s\n%s\n','       </frame>');
     44     
     45            % properties
     46            fprintf(fid,'%s\n%s\n%s\n','<frame key="2" label="Properties">','<section name="mesh" />');             
     47            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonboundary" type="',class(obj.vertexonboundary),'" default="',convert2str(obj.vertexonboundary),'">','     <section name="mesh" />','     <help> vertices on the boundary of the domain flag list </help>','  </parameter>');
     48            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonbase" type="',class(obj.vertexonbase),'" default="',convert2str(obj.vertexonbase),'">','     <section name="mesh" />','     <help> vertices on the bed of the domain flag list </help>','  </parameter>');           
     49            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="segments" type="',class(obj.segments),'" default="',convert2str(obj.segments),'">','     <section name="mesh" />','     <help> edges on domain boundary (vertex1 vertex2 element) </help>','  </parameter>');
     50            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="segmentmarkers" type="',class(obj.segmentmarkers),'" default="',convert2str(obj.segmentmarkers),'">','     <section name="mesh" />','     <help> number associated to each segment </help>','  </parameter>');
     51            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexconnectivity" type="',class(obj.vertexconnectivity),'" default="',convert2str(obj.vertexconnectivity),'">','     <section name="mesh" />','     <help> list of vertices connected to vertex_i </help>','  </parameter>');
     52            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elementconnectivity" type="',class(obj.elementconnectivity),'" default="',convert2str(obj.elementconnectivity),'">','     <section name="mesh" />','     <help> list of vertices connected to element_i </help>','  </parameter>');
     53            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="average_vertex_connectivity" type="',class(obj.average_vertex_connectivity),'" default="',convert2str(obj.average_vertex_connectivity),'">','     <section name="mesh" />','     <help> average number of vertices connected to one vertex </help>','  </parameter>');
     54            fprintf(fid,'%s\n%s\n','</frame>');
     55
     56            %projection
     57            fprintf(fid,'%s\n%s\n%s\n','<frame key="3" label="Projection">','<section name="mesh" />');
     58            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lat" type="',class(obj.lat),'" default="',convert2str(obj.lat),'">','     <section name="mesh" />','     <help> vertices latitude [degrees] </help>','  </parameter>');
     59            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="long" type="',class(obj.long),'" default="',convert2str(obj.long),'">','     <section name="mesh" />','     <help> verticies longitude [degrees] </help>','  </parameter>');
     60            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','  <parameter key ="hemisphere" type="',class(obj.hemisphere),'" default="',convert2str(obj.hemisphere),'">','     <section name="mesh" />','     <help> Indicate hemisphere ''n'' or ''s'' </help>','  </parameter>');
     61            fprintf(fid,'%s\n%s\n','</frame>');
     62       
     63        end % }}}
    3164                function obj = mesh2dvertical(varargin) % {{{
    3265                        switch nargin

  • issm/trunk-jpl/src/m/classes/mesh3dprisms.m

    r17886 r17931  
    4242        end
    4343        methods
     44           function createxml(obj,fid) % {{{
     45            fprintf(fid, '<!-- 3D prism Mesh -->\n');
     46           
     47            % Elements and verticies of the original 2d mesh
     48            fprintf(fid,'%s\n%s\n%s\n','       <frame key="1" label="Elements and vertices of the orginal 2d mesh">','       <section name="mesh3dprisms" />');
     49            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofelements2d" type="',class(obj.numberofelements2d),'" default="',convert2str(obj.numberofelements2d),'">','              <help> number of elements </help>','          </parameter>');
     50            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofvertices2d" type="',class(obj.numberofvertices2d),'" default="',convert2str(obj.numberofvertices2d),'">','              <help> number of vertices </help>','          </parameter>');
     51            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="elements2d" type="',class(obj.elements2d),'" default="',convert2str(obj.elements2d),'">','              <help> vertex indices of the mesh elements </help>','          </parameter>');
     52            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="x2d" type="',class(obj.x2d),'" default="',convert2str(obj.x2d),'">','     <section name="mesh3dprisms" />','     <help> vertices x coordinate [m] </help>','  </parameter>');
     53            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="y2d" type="',class(obj.y2d),'" default="',convert2str(obj.y2d),'">','     <section name="mesh3dprisms" />','     <help> vertices y coordinate [m] </help>','  </parameter>');
     54            fprintf(fid,'%s\n%s\n','       </frame>');
     55           
     56            % Elements and vertices of the extruded 3d mesh
     57            fprintf(fid,'%s\n%s\n%s\n','       <frame key="2" label="Elements and vertices of the orginal 3d mesh">','       <section name="mesh3dprisms" />');
     58            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofelements" type="',class(obj.numberofelements),'" default="',convert2str(obj.numberofelements),'">','              <help> number of elements </help>','          </parameter>');
     59            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofvertices" type="',class(obj.numberofvertices),'" default="',convert2str(obj.numberofvertices),'">','              <help> number of vertices </help>','          </parameter>');
     60            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="elements" type="',class(obj.elements),'" default="',convert2str(obj.elements),'">','              <help> vertex indices of the mesh elements </help>','          </parameter>');
     61            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="x" type="',class(obj.x),'" default="',convert2str(obj.x),'">','     <section name="mesh3dprisms" />','     <help> vertices x coordinate [m] </help>','  </parameter>');
     62            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="y" type="',class(obj.y),'" default="',convert2str(obj.y),'">','     <section name="mesh3dprisms" />','     <help> vertices y coordinate [m] </help>','  </parameter>');
     63            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="z" type="',class(obj.y),'" default="',convert2str(obj.y),'">','     <section name="mesh3dprisms" />','     <help> vertices z coordinate [m] </help>','  </parameter>');
     64            fprintf(fid,'%s\n%s\n','       </frame>');
     65     
     66            % properties
     67            fprintf(fid,'%s\n%s\n%s\n','<frame key="3" label="Properties">','<section name="mesh3dprisms" />');             
     68            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="numberoflayers" type="',class(obj.numberoflayers),'" default="',convert2str(obj.numberoflayers),'">','     <section name="mesh3dprisms" />','     <help> number of extrusion layers </help>','  </parameter>');
     69            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonbase" type="',class(obj.vertexonbase),'" default="',convert2str(obj.vertexonbase),'">','     <section name="mesh3dprisms" />','     <help> lower vertices flags list </help>','  </parameter>');
     70            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elementontbase" type="',class(obj.elementontbase),'" default="',convert2str(obj.elementontbase),'">','     <section name="mesh3dprisms" />','     <help> lower elements flags list </help>','  </parameter>');
     71            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonsurface" type="',class(obj.vertexonsurface),'" default="',convert2str(obj.vertexonsurface),'">','     <section name="mesh3dprisms" />','     <help> upper vertices flags list </help>','  </parameter>');
     72            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elementontsurface" type="',class(obj.elementontsurface),'" default="',convert2str(obj.elementontsurface),'">','     <section name="mesh3dprisms" />','     <help> upper elements flags list </help>','  </parameter>');
     73            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="uppervertex" type="',class(obj.uppervertex),'" default="',convert2str(obj.uppervertex),'">','     <section name="mesh3dprisms" />','     <help> upper vertex list (NaN for vertex on the upper surface) </help>','  </parameter>');
     74            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="upperelements" type="',class(obj.upperelements),'" default="',convert2str(obj.upperelements),'">','     <section name="mesh3dprisms" />','     <help> upper element list (NaN for element on the upper layer) </help>','  </parameter>');
     75            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lowervertex" type="',class(obj.lowervertex),'" default="',convert2str(obj.lowervertex),'">','     <section name="mesh3dprisms" />','     <help> lower vertex list (NaN for vertex on the lower surface) </help>','  </parameter>');
     76            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lowerelements" type="',class(obj.lowerelements),'" default="',convert2str(obj.lowerelements),'">','     <section name="mesh3dprisms" />','     <help> element list (NaN for element on the lower layer) </help>','  </parameter>');
     77            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonboundary" type="',class(obj.vertexonboundary),'" default="',convert2str(obj.vertexonboundary),'">','     <section name="mesh3dprisms" />','     <help> vertices on the boundary of the domain flag list </help>','  </parameter>');
     78            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexconnectivity" type="',class(obj.vertexconnectivity),'" default="',convert2str(obj.vertexconnectivity),'">','     <section name="mesh3dprisms" />','     <help> list of vertices connected to vertex_i </help>','  </parameter>');
     79            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elementconnectivity" type="',class(obj.elementconnectivity),'" default="',convert2str(obj.elementconnectivity),'">','     <section name="mesh3dprisms" />','     <help> average number of vertices connected to one vertex </help>','  </parameter>');
     80            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="average_vertex_connectivity" type="',class(obj.average_vertex_connectivity),'" default="',convert2str(obj.average_vertex_connectivity),'">','     <section name="mesh3dprisms" />','     <help> average number of vertices connected to one vertex </help>','  </parameter>');
     81            fprintf(fid,'%s\n%s\n','</frame>');
     82           
     83            % Extracted model
     84            fprintf(fid,'%s\n%s\n%s\n','<frame key="4" label="Extracted Model">','<section name="mesh3dprisms" />');
     85            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="extractedvertices" type="',class(obj.extractedvertices),'" default="',convert2str(obj.extractedvertices),'">','     <section name="mesh3dprisms" />','     <help> vertices extracted from the model </help>','  </parameter>');
     86            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="extractedelements" type="',class(obj.extractedelements),'" default="',convert2str(obj.extractedelements),'">','     <section name="mesh3dprisms" />','     <help> elements extracted from the model </help>','  </parameter>');
     87            fprintf(fid,'%s\n%s\n','</frame>');
     88           
     89            % Projection
     90            fprintf(fid,'%s\n%s\n%s\n','<frame key="5" label="Projection">','<section name="mesh3dprisms" />');
     91            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lat" type="',class(obj.lat),'" default="',convert2str(obj.lat),'">','     <section name="mesh3dprisms" />','     <help> vertices latitude [degrees] </help>','  </parameter>');
     92            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="long" type="',class(obj.long),'" default="',convert2str(obj.long),'">','     <section name="mesh3dprisms" />','     <help> verticies longitude [degrees] </help>','  </parameter>');
     93            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','  <parameter key ="hemisphere" type="',class(obj.hemisphere),'" default="',convert2str(obj.hemisphere),'">','     <section name="mesh3dprisms" />','     <help> Indicate hemisphere ''n'' or ''s'' </help>','  </parameter>');
     94            fprintf(fid,'%s\n%s\n','</frame>');
     95       
     96        end % }}}cd
    4497                function self = mesh3dprisms(varargin) % {{{
    4598                        switch nargin

  • issm/trunk-jpl/src/m/classes/mesh3dtetras.m

    r17700 r17931  
    4040        end
    4141        methods
     42        function createxml(obj,fid) % {{{
     43            fprintf(fid, '<!-- 3D Tetra Mesh -->\n');
     44           
     45            % Elements and verticies of the original 2d mesh
     46            fprintf(fid,'%s\n%s\n%s\n','       <frame key="1" label="Elements and vertices of the orginal 2d mesh">','       <section name="mesh3dprisms" />');
     47            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofelements2d" type="',class(obj.numberofelements2d),'" default="',convert2str(obj.numberofelements2d),'">','              <help> number of elements </help>','          </parameter>');
     48            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofvertices2d" type="',class(obj.numberofvertices2d),'" default="',convert2str(obj.numberofvertices2d),'">','              <help> number of vertices </help>','          </parameter>');
     49            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="elements2d" type="',class(obj.elements2d),'" default="',convert2str(obj.elements2d),'">','              <help> vertex indices of the mesh elements </help>','          </parameter>');
     50            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="x2d" type="',class(obj.x2d),'" default="',convert2str(obj.x2d),'">','     <section name="mesh3dprisms" />','     <help> vertices x coordinate [m] </help>','  </parameter>');
     51            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="y2d" type="',class(obj.y2d),'" default="',convert2str(obj.y2d),'">','     <section name="mesh3dprisms" />','     <help> vertices y coordinate [m] </help>','  </parameter>');
     52            fprintf(fid,'%s\n%s\n','       </frame>');
     53           
     54            % Elements and vertices of the extruded 3d mesh
     55            fprintf(fid,'%s\n%s\n%s\n','       <frame key="2" label="Elements and vertices of the orginal 3d mesh">','       <section name="mesh3dprisms" />');
     56            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofelements" type="',class(obj.numberofelements),'" default="',convert2str(obj.numberofelements),'">','              <help> number of elements </help>','          </parameter>');
     57            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="numberofvertices" type="',class(obj.numberofvertices),'" default="',convert2str(obj.numberofvertices),'">','              <help> number of vertices </help>','          </parameter>');
     58            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','          <parameter key ="elements" type="',class(obj.elements),'" default="',convert2str(obj.elements),'">','              <help> vertex indices of the mesh elements </help>','          </parameter>');
     59            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="x" type="',class(obj.x),'" default="',convert2str(obj.x),'">','     <section name="mesh3dprisms" />','     <help> vertices x coordinate [m] </help>','  </parameter>');
     60            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="y" type="',class(obj.y),'" default="',convert2str(obj.y),'">','     <section name="mesh3dprisms" />','     <help> vertices y coordinate [m] </help>','  </parameter>');
     61            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="z" type="',class(obj.y),'" default="',convert2str(obj.y),'">','     <section name="mesh3dprisms" />','     <help> vertices z coordinate [m] </help>','  </parameter>');
     62            fprintf(fid,'%s\n%s\n','       </frame>');
     63     
     64            % properties
     65            fprintf(fid,'%s\n%s\n%s\n','<frame key="3" label="Properties">','<section name="mesh3dprisms" />');             
     66            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="numberoflayers" type="',class(obj.numberoflayers),'" default="',convert2str(obj.numberoflayers),'">','     <section name="mesh3dprisms" />','     <help> number of extrusion layers </help>','  </parameter>');
     67            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonbase" type="',class(obj.vertexonbase),'" default="',convert2str(obj.vertexonbase),'">','     <section name="mesh3dprisms" />','     <help> lower vertices flags list </help>','  </parameter>');
     68            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elementontbase" type="',class(obj.elementontbase),'" default="',convert2str(obj.elementontbase),'">','     <section name="mesh3dprisms" />','     <help> lower elements flags list </help>','  </parameter>');
     69            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonsurface" type="',class(obj.vertexonsurface),'" default="',convert2str(obj.vertexonsurface),'">','     <section name="mesh3dprisms" />','     <help> upper vertices flags list </help>','  </parameter>');
     70            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elementontsurface" type="',class(obj.elementontsurface),'" default="',convert2str(obj.elementontsurface),'">','     <section name="mesh3dprisms" />','     <help> upper elements flags list </help>','  </parameter>');
     71            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="uppervertex" type="',class(obj.uppervertex),'" default="',convert2str(obj.uppervertex),'">','     <section name="mesh3dprisms" />','     <help> upper vertex list (NaN for vertex on the upper surface) </help>','  </parameter>');
     72            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="upperelements" type="',class(obj.upperelements),'" default="',convert2str(obj.upperelements),'">','     <section name="mesh3dprisms" />','     <help> upper element list (NaN for element on the upper layer) </help>','  </parameter>');
     73            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lowervertex" type="',class(obj.lowervertex),'" default="',convert2str(obj.lowervertex),'">','     <section name="mesh3dprisms" />','     <help> lower vertex list (NaN for vertex on the lower surface) </help>','  </parameter>');
     74            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lowerelements" type="',class(obj.lowerelements),'" default="',convert2str(obj.lowerelements),'">','     <section name="mesh3dprisms" />','     <help> element list (NaN for element on the lower layer) </help>','  </parameter>');
     75            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexonboundary" type="',class(obj.vertexonboundary),'" default="',convert2str(obj.vertexonboundary),'">','     <section name="mesh3dprisms" />','     <help> vertices on the boundary of the domain flag list </help>','  </parameter>');
     76            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="vertexconnectivity" type="',class(obj.vertexconnectivity),'" default="',convert2str(obj.vertexconnectivity),'">','     <section name="mesh3dprisms" />','     <help> list of vertices connected to vertex_i </help>','  </parameter>');
     77            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="elementconnectivity" type="',class(obj.elementconnectivity),'" default="',convert2str(obj.elementconnectivity),'">','     <section name="mesh3dprisms" />','     <help> average number of vertices connected to one vertex </help>','  </parameter>');
     78            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="average_vertex_connectivity" type="',class(obj.average_vertex_connectivity),'" default="',convert2str(obj.average_vertex_connectivity),'">','     <section name="mesh3dprisms" />','     <help> average number of vertices connected to one vertex </help>','  </parameter>');
     79            fprintf(fid,'%s\n%s\n','</frame>');
     80           
     81            % Extracted model
     82            fprintf(fid,'%s\n%s\n%s\n','<frame key="4" label="Extracted Model">','<section name="mesh3dprisms" />');
     83            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="extractedvertices" type="',class(obj.extractedvertices),'" default="',convert2str(obj.extractedvertices),'">','     <section name="mesh3dprisms" />','     <help> vertices extracted from the model </help>','  </parameter>');
     84            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="extractedelements" type="',class(obj.extractedelements),'" default="',convert2str(obj.extractedelements),'">','     <section name="mesh3dprisms" />','     <help> elements extracted from the model </help>','  </parameter>');
     85            fprintf(fid,'%s\n%s\n','</frame>');
     86           
     87            % Projection
     88            fprintf(fid,'%s\n%s\n%s\n','<frame key="5" label="Projection">','<section name="mesh3dprisms" />');
     89            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="lat" type="',class(obj.lat),'" default="',convert2str(obj.lat),'">','     <section name="mesh3dprisms" />','     <help> vertices latitude [degrees] </help>','  </parameter>');
     90            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="long" type="',class(obj.long),'" default="',convert2str(obj.long),'">','     <section name="mesh3dprisms" />','     <help> verticies longitude [degrees] </help>','  </parameter>');
     91            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n','  <parameter key ="hemisphere" type="',class(obj.hemisphere),'" default="',convert2str(obj.hemisphere),'">','     <section name="mesh3dprisms" />','     <help> Indicate hemisphere ''n'' or ''s'' </help>','  </parameter>');
     92            fprintf(fid,'%s\n%s\n','</frame>');
     93       
     94        end % }}}cd
    4295                function self = mesh3dtetras(varargin) % {{{
    4396                        switch nargin

  • issm/trunk-jpl/src/m/classes/model.m

    r17811 r17931  
    10951095                        md.verbose          = verbose();
    10961096                        md.settings         = settings();
    1097                         md.toolkits         = toolkits();
     1097                        %md.toolkits         = toolkits();
    10981098                        md.cluster          = generic();
    10991099                        md.balancethickness = balancethickness();

  • issm/trunk-jpl/src/m/classes/settings.m

    r17720 r17931  
    2424                        fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="results_on_nodes" type="',      class(obj.results_on_nodes),'" default="',        convert2str(obj.results_on_nodes),'">',  '     <section name="settings" />','     <help> results are output for all the nodes of each element </help>','</parameter>');
    2525            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="io_gather" type="',          class(obj.io_gather),'" default="',           convert2str(obj.io_gather),'">',     '     <section name="settings" />','     <help> I/O gathering strategy for result outputs (default 1) </help>','</parameter>');
    26             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',     '<parameter key ="lowmem" type="',        class(obj.lowmem),'" default="',         convert2str(obj.lowmem),'">',        '     <section name="settings" />','     <help> is the memory limited ? (0 or 1) </help>','</parameter>');
     26           
     27            % lowmen drop-down (0 or 1)
     28            fprintf(fid,'%s\n%s\n%s\n%s\n',     '<parameter key ="lowmem" type="alternative" optional="true">', '     <section name="settings" />','     <help> is the memory limited ? (0 or 1) </help>');
     29            fprintf(fid,'%s\n','       <option value="0" type="string" default="true"> </option>');
     30            fprintf(fid,'%s\n%s\n','       <option value="1" type="string" default="false"> </option>','</parameter>');
     31
    2732            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="output_frequency" type="',          class(obj.output_frequency),'" default="',           convert2str(obj.output_frequency),'">',       '     <section name="settings" />','     <help> frequency at which results are saved in all solutions with multiple time_steps </help>','</parameter>');
    2833            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="waitonlock" type="',   class(obj.waitonlock),'" default="',      convert2str(obj.waitonlock),'">',     '     <section name="settings" />','     <help> maximum number of minutes to wait for batch results (NaN to deactivate) </help>','</parameter>');

  • issm/trunk-jpl/src/m/classes/stressbalance.m

    r17720 r17931  
    3535             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="reltol" type="',          class(obj.reltol),'" default="',            convert2str(obj.reltol),'">',     '     <section name="stressbalance" />','     <help> velocity relative convergence criterion, NaN: not applied </help>','</parameter>');
    3636             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="abstol" type="',        class(obj.abstol),'" default="',          convert2str(obj.abstol),'">',       '     <section name="stressbalance" />','     <help> velocity absolute convergence criterion, NaN: not applied </help>','</parameter>');
    37              fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="isnewton" type="',          class(obj.isnewton),'" default="',            convert2str(obj.isnewton),'">',     '     <section name="stressbalance" />','     <help> 0: Picards fixed point, 1: Newtons method, 2: hybrid </help>','</parameter>');
     37             
     38             %is newton drop-down (0,1,or 2)
     39             fprintf(fid,'%s\n%s\n%s\n%s\n',    '<parameter key ="isnewton" type="alternative" optional="false">',      '     <section name="stressbalance" />','     <help> 0: Picards fixed point, 1: Newtons method, 2: hybrid </help>');
     40             fprintf(fid,'%s\n','       <option value="0" type="string" default="true"> </option>');
     41             fprintf(fid,'%s\n','       <option value="1" type="string" default="false"> </option>');
     42             fprintf(fid,'%s\n%s\n','       <option value="2" type="string" default="false"> </option>','</parameter>');
     43   
    3844             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="maxiter" type="',     class(obj.maxiter),'" default="',       convert2str(obj.maxiter),'">',     '     <section name="stressbalance" />','     <help> maximum number of nonlinear iterations </help>','</parameter>');
    3945             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="viscosity_overshoot" type="',         class(obj.viscosity_overshoot),'" default="',           convert2str(obj.viscosity_overshoot),'">',      '     <section name="stressbalance" />','     <help> over-shooting constant new=new+C*(new-old) </help>','</parameter>');

  • issm/trunk-jpl/src/m/classes/thermal.m

    r17720 r17931  
    2222            % thermal solution parameters
    2323            fprintf(fid,'%s\n%s\n%s\n','<frame key="1" label="Thermal solution parameters">','<section name="thermal" />');                   
    24                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="spctemperature" type="',class(obj.spctemperature),'" default="',convert2str(obj.spctemperature),'">','     <section name="thermal" />','     <help> temperature constraints (NaN means no constraint) [K] </help>','  </parameter>');
    25                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="penalty_threshold" type="',class(obj.penalty_threshold),'" default="',convert2str(obj.penalty_threshold),'">','     <section name="thermal" />','     <help> 0: no, 1: artificial_diffusivity, 2: SUPG </help>','  </parameter>');
    26                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="stabilization" type="',class(obj.stabilization),'" default="',convert2str(obj.stabilization),'">','     <section name="thermal" />','     <help> maximum number of non linear iterations </help>','  </parameter>');
    27                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="maxiter" type="',class(obj.maxiter),'" default="',convert2str(obj.maxiter),'">','     <section name="thermal" />','     <help> stabilize unstable thermal constraints that keep zigzagging after n iteration (default is 0, no stabilization) </help>','  </parameter>');
    28                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="penalty_lock" type="',class(obj.penalty_lock),'" default="',convert2str(obj.penalty_lock),'">','     <section name="thermal" />','     <help> threshold to declare convergence of thermal solution (default is 0)  </help>','  </parameter>');
    29                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="penalty_factor" type="',class(obj.penalty_factor),'" default="',convert2str(obj.penalty_factor),'">','     <section name="thermal" />','     <help> scaling exponent (default is 3) </help>','  </parameter>');
    30                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="isenthalpy" type="',class(obj.isenthalpy),'" default="',convert2str(obj.isenthalpy),'">','     <section name="thermal" />','     <help> use an enthalpy formulation to include temperate ice (default is 0) </help>','  </parameter>');
    31                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="isdynamicbasalspc" type="',class(obj.isdynamicbasalspc),'" default="',convert2str(obj.isdynamicbasalspc),'">','     <section name="thermal" />','     <help> enable dynamic setting of basal forcing. required for enthalpy formulation (default is 0)  </help>','  </parameter>');
    32                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="requested_outputs" type="',class(obj.requested_outputs),'" default="',convert2str(obj.requested_outputs),'">','     <section name="thermal" />','     <help> additional outputs requested </help>','  </parameter>');
     24            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="spctemperature" type="',class(obj.spctemperature),'" default="',convert2str(obj.spctemperature),'">','     <section name="thermal" />','     <help> temperature constraints (NaN means no constraint) [K] </help>','  </parameter>');
     25               
     26            % penalty_threshold drop-down (0, 1, or 2)
     27            fprintf(fid,'%s\n%s\n%s\n%s\n','  <parameter key ="penalty_threshold" type="alternative"  optional="false">','     <section name="thermal" />','     <help> 0: no, 1: artificial_diffusivity, 2: SUPG </help>');
     28            fprintf(fid,'%s\n','       <option value="0" type="string" default="true"> </option>');
     29            fprintf(fid,'%s\n','       <option value="1" type="string" default="false"> </option>');
     30            fprintf(fid,'%s\n%s\n','       <option value="2" type="string" default="false"> </option>','</parameter>');
     31
     32            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="stabilization" type="',class(obj.stabilization),'" default="',convert2str(obj.stabilization),'">','     <section name="thermal" />','     <help> maximum number of non linear iterations </help>','  </parameter>');
     33            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="maxiter" type="',class(obj.maxiter),'" default="',convert2str(obj.maxiter),'">','     <section name="thermal" />','     <help> stabilize unstable thermal constraints that keep zigzagging after n iteration (default is 0, no stabilization) </help>','  </parameter>');
     34            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="penalty_lock" type="',class(obj.penalty_lock),'" default="',convert2str(obj.penalty_lock),'">','     <section name="thermal" />','     <help> threshold to declare convergence of thermal solution (default is 0)  </help>','  </parameter>');
     35            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="penalty_factor" type="',class(obj.penalty_factor),'" default="',convert2str(obj.penalty_factor),'">','     <section name="thermal" />','     <help> scaling exponent (default is 3) </help>','  </parameter>');
     36            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="isenthalpy" type="',class(obj.isenthalpy),'" default="',convert2str(obj.isenthalpy),'">','     <section name="thermal" />','     <help> use an enthalpy formulation to include temperate ice (default is 0) </help>','  </parameter>');
     37            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="isdynamicbasalspc" type="',class(obj.isdynamicbasalspc),'" default="',convert2str(obj.isdynamicbasalspc),'">','     <section name="thermal" />','     <help> enable dynamic setting of basal forcing. required for enthalpy formulation (default is 0)  </help>','  </parameter>');
     38            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="requested_outputs" type="',class(obj.requested_outputs),'" default="',convert2str(obj.requested_outputs),'">','     <section name="thermal" />','     <help> additional outputs requested </help>','  </parameter>');
    3339            fprintf(fid,'%s\n%s\n','</frame>');   
    3440       

  • issm/trunk-jpl/src/m/classes/timestepping.m

    r17720 r17931  
    1919            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="final_time" type="',            class(obj.final_time),'" default="',                convert2str(obj.final_time),'">',   '     <section name="timestepping" />','     <help> final time to stop the simulation [yr] </help>','</parameter>');
    2020            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',        '<parameter key ="time_step" type="',      class(obj.time_step),'" default="',          convert2str(obj.time_step),'">',            '     <section name="timestepping" />','     <help> length of time steps [yr] </help>','</parameter>');
    21             fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',        '<parameter key ="time_adapt" type="',     class(obj.time_adapt),'" default="',         convert2str(obj.time_adapt),'">',            '     <section name="timestepping" />','     <help> use cfl condition to define time step ? (0 or 1)  </help>','</parameter>');
     21            % time_adapt 0 or 1 drop down
     22            fprintf(fid,'%s\n%s\n%s\n%s\n','<parameter key ="time_adapt" type="alternative" optional="false">','     <section name="timestepping" />','     <help> use cfl condition to define time step ? (0 or 1)  </help>');
     23            fprintf(fid, '%s\n',   '       <option value="0" type="string" default="true"></option>');
     24            fprintf(fid, '%s\n%s\n',   '       <option value="1" type="string" default="false"></option>','</parameter>');
    2225            fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n',    '<parameter key ="cfl_coefficient" type="',       class(obj.cfl_coefficient),'" default="',              convert2str(obj.cfl_coefficient),'">',              '     <section name="timestepping" />','     <help> coefficient applied to cfl condition </help>','</parameter>');
    2326           

  • issm/trunk-jpl/src/m/classes/transient.m

    r17748 r17931  
    2727                fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="isgroundingline" type="',class(obj.isgroundingline),'" default="',convert2str(obj.isgroundingline),'">','     <section name="transient" />','     <help> indicates whether a groundingline migration is used in the transient </help>','  </parameter>');
    2828                fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="isgia" type="',class(obj.isgia),'" default="',convert2str(obj.isgia),'">','     <section name="transient" />','     <help> indicates whether a postglacial rebound model is used in the transient </help>','  </parameter>');
    29                 fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="isdamage" type="',class(obj.isdamage),'" default="',convert2str(obj.isdamage),'">','     <section name="transient" />','     <help> indicates whether damage evolution is used in the transient </help>','  </parameter>');
     29                fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="isdamageevolution" type="',class(obj.isdamageevolution),'" default="',convert2str(obj.isdamageevolution),'">','     <section name="transient" />','     <help> indicates whether damage evolution is used in the transient </help>','  </parameter>');
    3030                fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="islevelset" type="',class(obj.islevelset),'" default="',convert2str(obj.islevelset),'">','     <section name="transient" />','     <help> LEVEL SET DESCRIPTION...  </help>','  </parameter>');
    3131                fprintf(fid,'%s%s%s%s%s\n%s\n%s\n%s\n','  <parameter key ="requested_outputs" type="',class(obj.requested_outputs),'" default="',convert2str(obj.requested_outputs),'">','     <section name="transient" />','     <help> list of additional outputs requested </help>','  </parameter>');
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