Index: sm/trunk-jpl/scripts/Update.sh =================================================================== --- /issm/trunk-jpl/scripts/Update.sh (revision 17922) +++ (revision ) @@ -1,98 +1,0 @@ -#!/bin/bash -FILE=$1 -if [ $# -ne 1 ]; -then - echo "Usage: ./Update.sh filename " 1>&2 - exit 1 -fi -if [ ! -f $FILE ]; then - echo "File $FILE does not exist or is empty. Exiting." 1>&2 - exit 1 -fi - -cat $FILE | sed -e "s/md\.name/md.miscellaneous.name/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.spcvx/md.diagnostic.spcvx/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.spcvy/md.diagnostic.spcvy/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.spcvz/md.diagnostic.spcvz/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.spctemperature/md.thermal.spctemperature/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.spcthickness/md.balancethickness.spcthickness/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.bamg/md.private.bamg/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.numberofgrids/md.mesh.numberofvertices/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.vx_obs/md.inversion.vx_obs/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.vy_obs/md.inversion.vy_obs/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.vel_obs/md.inversion.vel_obs/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.vx/md.initialization.vx/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.vy/md.initialization.vy/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.vz/md.initialization.vz/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.vel/md.initialization.vel/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.temperature/md.initialization.temperature/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.pressure/md.initialization.pressure/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.thickness_obs/md.inversion.thickness_obs/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.thickness/md.geometry.thickness/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.bed/md.geometry.bed/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.bathymetry/md.geometry.bathymetry/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.surface_mass_balance/md.surfaceforcings.mass_balance/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.surface=/md.geometry.surface=/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.surface /md.geometry.surface /g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.surface,/md.geometry.surface,/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.surface;/md.geometry.surface;/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.x/md.mesh.x/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.yts/md.constants.yts/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.y/md.mesh.y/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.z/md.mesh.z/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.lat/md.mesh.lat/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.long/md.mesh.long/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.hemisphere/md.mesh.hemisphere/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.numberofnodes/md.mesh.numberofvertices/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.numberofelements/md.mesh.numberofelements/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.drag_coefficient/md.friction.coefficient/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.drag_p/md.friction.p/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.drag_q/md.friction.q/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/setelementstype/setflowequation/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/geography(md/setmask(md/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.rheology_B/md.materials.rheology_B/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.rho_ice/md.materials.rho_ice/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.rho_water/md.materials.rho_water/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.nodeonbed/md.mesh.vertexonbed/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.nodeonboundary/md.mesh.vertexonboundary/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.petscoptions/md.solver/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.dhdt/md.balancethickness.thickening_rate/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.eps_rel/md.diagnostic.reltol/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.eps_res/md.diagnostic.restol/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.eps_abs/md.diagnostic.abstol/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.eps_cm/md.inversion.cost_function_threshold/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.cm_responses/md.inversion.cost_functions/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.nsteps/md.inversion.nsteps/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.weights/md.inversion.cost_functions_coefficients/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.optscal/md.inversion.gradient_scaling/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.cm_jump/md.inversion.step_threshold/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.control_type/md.inversion.control_parameters/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.waitonlock/md.settings.waitonlock/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.cm_min/md.inversion.min_parameters/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.cm_max/md.inversion.max_parameters/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.maxiter/md.inversion.maxiter_per_step/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.control_type/md.inversion.control_parameters/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.control_type/md.inversion.control_parameters/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.min_thermal_constraints/md.thermal.penalty_threshold/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.control_analysis/md.inversion.iscontrol/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/SurfaceAbsVelMisfitEnum/101/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/SurfaceRelVelMisfitEnum/102/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/SurfaceLogVelMisfitEnum/103/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/SurfaceLogVxVyMisfitEnum/104/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/SurfaceAverageVelMisfitEnum/105/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/ThicknessAbsMisfitEnum/201/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/DragCoefficientAbsGradientEnum/501/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/RheologyBbarAbsGradientEnum/502/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/ThicknessAbsGradientEnum/503/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/DragCoefficientEnum/{'FrictionCoefficient'}/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.elementoniceshelf/md.mask.elementonfloatingice/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.nodeoniceshelf/md.mask.vertexonfloatingice/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.elementonicesheet/md.mask.elementongroundedice/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.nodeonicesheet/md.mask.vertexongroundedice/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.elements/md.mesh.elements/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.rheology_n/md.materials.rheology_n/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.gl_migration/md.groundingline.migration/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.hydrostatic_adjustment/md.prognostic.hydrostatic_adjustment/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.rheology_law/md.materials.rheology_law/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.basal_melting_rate/md.basalforcings.melting_rate/g" > $FILE$$.bak && mv $FILE$$.bak $FILE -cat $FILE | sed -e "s/md\.geothermalflux/md.basalforcings.geothermalflux/g" > $FILE$$.bak && mv $FILE$$.bak $FILE Index: sm/trunk-jpl/scripts/archive.sh =================================================================== --- /issm/trunk-jpl/scripts/archive.sh (revision 17922) +++ (revision ) @@ -1,22 +1,0 @@ -#!/bin/bash -#This bash routine will create a tar file for the ISSM -#code. Just run the following command: - -#Some local script functions -function today_date { -suffix=`date | awk '{printf("%s-%s-%s",$2,$3,$6);}'` -echo $suffix; -} - -#Cleanup code -cd $ISSM_DIR -make clean -make distclean - -#Get rid of externalpackages -rm -rf externalpackages - -#Create tar file, with today's date in the title; -cd $ISSM_DIR/.. -today=`today_date` -tar zcvf issm-3.0-$today.tar.gz `basename $ISSM_DIR` Index: sm/trunk-jpl/scripts/sync.sh =================================================================== --- /issm/trunk-jpl/scripts/sync.sh (revision 17922) +++ (revision ) @@ -1,100 +1,0 @@ -#!/bin/bash - -#This shell tries to synchronize the current cielo root directory on another -#machine. - -echo "Watch out, this script should be run in top level directory of cielo" - -echo -n "Platform (cosmos,mustang,gemini,pleiades)?: " -read platform - - -if [[ "$platform" == "cosmos" ]] -then - echo "Synchronizing cielo with cosmos" - #first cleanup the archive - cl - clb - cls - #then tar the archive - present_directory=`pwd`; - cd ../ - rm -rf trunk.tar.gz - tar zcvf trunk.tar.gz trunk - - #send archive to cosmos - scp trunk.tar.gz larour@cosmos.jpl.nasa.gov:/home/larour - - #run synchronization script on cosmos - ssh larour@cosmos.jpl.nasa.gov './sync_cosmos.sh' - - rm -rf trunk.tar.gz -elif [[ "$platform" == "mustang" ]] -then - - echo "Synchronizing cielo with mustang" - #first cleanup the archive - cl - clb - cls - #then tar the archive - present_directory=`pwd`; - cd ../ - rm -rf trunk.tar.gz - tar zcvf trunk.tar.gz trunk - - #send archive to mustang - scp trunk.tar.gz larour@mustang.jpl.nasa.gov:/proj/ice/larour/Ice/ - - #run synchronization script on cosmos - ssh larour@mustang.jpl.nasa.gov './sync_mustang.sh' - - rm -rf trunk.tar.gz -elif [[ "$platform" == "gemini" ]] -then - echo "Synchronizing cielo with gemini" - - rm -rf Synchronisation - mkdir Synchronisation - cd Synchronisation - svn co svn+ssh://mustang.jpl.nasa.gov/proj/ice/issm/issm/trunk - - #then tar the archive - tar zcvf trunk.tar.gz trunk/ - - #send archive to cosmos - scp trunk.tar.gz larour@gemini.jpl.nasa.gov:/home/larour - - #run synchronization script on cosmos - ssh larour@gemini.jpl.nasa.gov './sync_gemini.sh' - - #exit - cd .. - rm -rf Synchronisation - -elif [[ "$platform" == "pleiades" ]] -then - echo "Synchronizing issm with pleiades" - - rm -rf Synchronisation - mkdir Synchronisation - cd Synchronisation - svn co svn+ssh://mustang.jpl.nasa.gov/proj/ice/issm/issm/trunk - - #then tar the archive - tar zcvf trunk.tar.gz trunk/ - - #send archive to cosmos - scp trunk.tar.gz elarour@pfe:/home1/elarour - - #run synchronization script on cosmos - ssh elarour@pfe './sync_pleiades.sh' - - #exit - cd .. - rm -rf Synchronisation - -else - echo "This platform not supported yet" - exit -fi