Index: sm/trunk-jpl/CMakeLists.txt =================================================================== --- /issm/trunk-jpl/CMakeLists.txt (revision 17585) +++ (revision ) @@ -1,57 +1,0 @@ -# CMake version check. Version 2.6 is considered standard. -cmake_minimum_required (VERSION 2.6) - -# Project Information {{{ -# Project Name -project(ISSM) -set(ISSM_VERSION_MAJOR 4) -set(ISSM_VERSION_MINOR 1) -# }}} -# Contact Information {{{ -set(ISSM_EMAIL "issm@jpl.nasa.gov") -set(ISSM_WEBSITE "http://issm.jpl.nasa.gov") -# }}} - -# CMake Modules {{{ -include(CheckLanguage) -include(./m4/issm_options.cmake) -# }}} - -# Language Checks {{{ - -# 'C' language check. -include(CheckLanguage) - -check_language(C) -if(CMAKE_C_COMPILER) - enable_language(C) -else(CMAKE_C_COMPILER) - message(FATAL_ERROR "No C support found!") -endif(CMAKE_C_COMPILER) - -# 'C++' language check. -check_language(CXX) -if(CMAKE_CXX_COMPILER) - enable_language(CXX) -else(CMAKE_CXX_COMPILER) - message(FATA_ERROR "No C++ support found!") -endif(CMAKE_CXX_COMPILER) - -# 'Fortran' language check. -#check_language(Fortran) -#if(CMAKE_Fortran_COMPILER) -# enable_language(Fortran) -#else(CMAKE_Fortran_COMPILER) -# message(FATA_ERROR "No Fortran support") -#endif(CMAKE_Fortran_COMPILER) -# }}} - -# Subdirectories {{{ -add_subdirectory(src) -# }}} - -# Options {{{ -option(SHARED_LIBS "Set whether to produce shared libraries, or not. Default is no." - OFF) -# Questionable whether all options should be contained within this file or included from some other file. -# }}} Index: sm/trunk-jpl/m4/issm_options.cmake =================================================================== --- /issm/trunk-jpl/m4/issm_options.cmake (revision 17585) +++ (revision ) @@ -1,37 +1,0 @@ -# ISSM Options {{{ -option(DAKOTA "DAKOTA" OFF) -option(PETSC "PETSC" OFF) -option(MUMPS "MUMPS" OFF) -#option(GSL "GSL" OFF) -option(TRANSIENT "TRANSIENT" ON) -option(STEADYSTATE "STEADYSTATE" ON) -option(PROGNOSTIC "PROGNOSTIC" ON) -option(THERMAL "THERMAL" ON) -option(GIA "GIA" OFF) -option(CONTROL "CONTROL" ON) -option(HYDROLOGY "HYDROLOGY" ON) -option(DIAGNOSTIC "DIAGNOSTIC" ON) -option(BALANCED "BALANCED" ON) -option(SLOPE "SLOPE" ON) -option(GROUNDINGLINE "GROUNDINGLINE" ON) -option(RIFTS "RIFTS" ON) -option(ANDROID "ANDROID" OFF) -option(THREED "THREED" ON) -option(MPI "MPI" OFF) -option(METIS "METIS" OFF) -option(KRIGING "KRIGING" OFF) -# }}} - -if(NOT GSL_DIR) - message(FATAL_ERROR "Non GSL build not supported") -else(NOT GSL_DIR) - find_path(GSL lib ${GSL_DIR}) - - if(GSL) - message("Found GSL: ${GSL_DIR}") - set(GSL_INC_DIR ${GSL_DIR}/include) - set(GSL_LIB_DIR ${GSL_DIR}/lib) - else(GSL) - message(FATAL_ERROR "GSL installation directory not found!") - endif(GSL) -endif(NOT GSL_DIR) Index: sm/trunk-jpl/src/CMakeLists.txt =================================================================== --- /issm/trunk-jpl/src/CMakeLists.txt (revision 17585) +++ (revision ) @@ -1,8 +1,0 @@ -# Subdirectories {{{ -add_subdirectory(c) -#add_subdirectory(m) -#add_subdirectory(wrappers) -#Android Dir {{{ -# add_subdirectory(android) -#}}} -# }}} Index: sm/trunk-jpl/src/c/CMakeLists.txt =================================================================== --- /issm/trunk-jpl/src/c/CMakeLists.txt (revision 17585) +++ (revision ) @@ -1,728 +1,0 @@ -# config.h {{{ -set(CPP_FLAGS -DHAVE_CONFIG_H) -# }}} -# Include Directory {{{ -include_directories(AFTER $ENV{ISSM_DIR}/ - $ENV{ISSM_DIR}/src/c - $ENV{ISSM_DIR}/src/c/main - $ENV{ISSM_DIR}/src/c/datastructure - $ENV{ISSM_DIR}/src/c/classes - $ENV{ISSM_DIR}/src/c/classes/Options - $ENV{ISSM_DIR}/src/c/classes/ExternalResults - $ENV{ISSM_DIR}/src/c/classes/Elements - $ENV{ISSM_DIR}/src/c/classes/Inputs - $ENV{ISSM_DIR}/src/c/classes/Materials - $ENV{ISSM_DIR}/src/c/classes/Constraints - $ENV{ISSM_DIR}/src/c/classes/Loads - $ENV{ISSM_DIR}/src/c/classes/matrix - $ENV{ISSM_DIR}/src/c/classes/Params - $ENV{ISSM_DIR}/src/c/classes/Params - $ENV{ISSM_DIR}/src/c/shared - $ENV{ISSM_DIR}/src/c/shared/MemOps - $ENV{ISSM_DIR}/src/c/shared/Matrix - $ENV{ISSM_DIR}/src/c/shared/io - $ENV{ISSM_DIR}/src/c/shared/io/Disk - $ENV{ISSM_DIR}/src/c/shared/io/Print - $ENV{ISSM_DIR}/src/c/shared/io/Comm - $ENV{ISSM_DIR}/src/c/shared/LatLong - $ENV{ISSM_DIR}/src/c/shared/Enum - $ENV{ISSM_DIR}/src/c/shared/Numerics - $ENV{ISSM_DIR}/src/c/shared/Exceptions - $ENV{ISSM_DIR}/src/c/shared/Sorting - $ENV{ISSM_DIR}/src/c/shared/Elements - $ENV{ISSM_DIR}/src/c/shared/String - $ENV{ISSM_DIR}/src/c/toolkits - $ENV{ISSM_DIR}/src/c/toolkits/metis - $ENV{ISSM_DIR}/src/c/toolkits/issm - $ENV{ISSM_DIR}/src/c/toolkits/adolc - $ENV{ISSM_DIR}/src/c/toolkits/triangle - $ENV{ISSM_DIR}/src/c/toolkits/objects - $ENV{ISSM_DIR}/src/c/modules - $ENV{ISSM_DIR}/src/c/modules/ModelProcessorx - $ENV{ISSM_DIR}/src/c/modules/ParseToolkitsOptionsx - $ENV{ISSM_DIR}/src/c/modules/NodesDofx - $ENV{ISSM_DIR}/src/c/modules/NodalValuex - $ENV{ISSM_DIR}/src/c/modules/VerticesDofx - $ENV{ISSM_DIR}/src/c/modules/VertexCoordinatesx - $ENV{ISSM_DIR}/src/c/modules/OutputResultsx - $ENV{ISSM_DIR}/src/c/modules/InputDuplicatex - $ENV{ISSM_DIR}/src/c/modules/InputScalex - $ENV{ISSM_DIR}/src/c/modules/SurfaceAreax - $ENV{ISSM_DIR}/src/c/modules/CreateNodalConstraintsx - $ENV{ISSM_DIR}/src/c/modules/UpdateDynamicConstraintsx - $ENV{ISSM_DIR}/src/c/modules/IoModelToConstraintsx - $ENV{ISSM_DIR}/src/c/modules/InputUpdateFromConstantx - $ENV{ISSM_DIR}/src/c/modules/GetSolutionFromInputsx - $ENV{ISSM_DIR}/src/c/modules/GetVectorFromInputsx - $ENV{ISSM_DIR}/src/c/modules/InputUpdateFromVectorx - $ENV{ISSM_DIR}/src/c/modules/ConfigureObjectsx - $ENV{ISSM_DIR}/src/c/modules/ComputeBasalStressx - $ENV{ISSM_DIR}/src/c/modules/ComputeStrainRatex - $ENV{ISSM_DIR}/src/c/modules/SpcNodesx - $ENV{ISSM_DIR}/src/c/modules/PositiveDegreeDayx - $ENV{ISSM_DIR}/src/c/modules/Delta18oParameterizationx - $ENV{ISSM_DIR}/src/c/modules/SmbGradientsx - $ENV{ISSM_DIR}/src/c/modules/MeshPartitionx - $ENV{ISSM_DIR}/src/c/modules/Reducevectorgtofx - $ENV{ISSM_DIR}/src/c/modules/Reduceloadx - $ENV{ISSM_DIR}/src/c/modules/ConstraintsStatex - $ENV{ISSM_DIR}/src/c/modules/ResetConstraintsx - $ENV{ISSM_DIR}/src/c/modules/ResetCoordinateSystemx - $ENV{ISSM_DIR}/src/c/modules/Solverx - $ENV{ISSM_DIR}/src/c/modules/VecMergex - $ENV{ISSM_DIR}/src/c/modules/Mergesolutionfromftogx - $ENV{ISSM_DIR}/src/c/cores - $ENV{ISSM_DIR}/src/c/solutionsequences - $ENV{ISSM_DIR}/src/c/solutionsequences) -# }}} - -# Core Sources {{{ -set(core_sources ./datastructures/DataSet.cpp - ./classes/gauss/GaussTria.cpp - ./classes/FemModel.cpp - ./classes/Loads/Friction.cpp - ./classes/Inputs/TransientInput.cpp - ./classes/Constraints/SpcTransient.cpp - ./classes/IndependentObject.cpp - ./classes/DependentObject.cpp - ./classes/DofIndexing.cpp - ./classes/IoModel.cpp - ./classes/Contours.cpp - ./classes/Nodes.cpp - ./classes/Vertices.cpp - ./classes/Node.cpp - ./classes/Vertex.cpp - ./classes/Hook.cpp - ./classes/ExternalResults/Results.cpp - ./classes/Elements/Elements.cpp - ./classes/Elements/ElementHook.cpp - ./classes/Elements/Tria.cpp - ./classes/Elements/TriaRef.cpp - ./classes/Inputs/Inputs.cpp - ./classes/Inputs/TriaInput.cpp - ./classes/Inputs/BoolInput.cpp - ./classes/Inputs/IntInput.cpp - ./classes/Inputs/DoubleInput.cpp - ./classes/Inputs/DatasetInput.cpp - ./classes/Materials/Materials.cpp - ./classes/Materials/Matice.cpp - ./classes/Materials/Matdamageice.cpp - ./classes/Materials/Matpar.cpp - ./classes/Constraints/Constraints.cpp - ./classes/Constraints/SpcStatic.cpp - ./classes/Constraints/SpcDynamic.cpp - ./classes/Loads/Loads.cpp - ./classes/Loads/Penpair.cpp - ./classes/Loads/Pengrid.cpp - ./classes/Loads/Icefront.cpp - ./classes/Loads/Numericalflux.cpp - ./classes/matrix/ElementMatrix.cpp - ./classes/matrix/ElementVector.cpp - ./classes/Params/Parameters.cpp - ./classes/Params/BoolParam.cpp - ./classes/Params/IntParam.cpp - ./classes/Params/IntVecParam.cpp - ./classes/Params/IntMatParam.cpp - ./classes/Params/DoubleParam.cpp - ./classes/Params/FileParam.cpp - ./classes/Params/StringArrayParam.cpp - ./classes/Params/DoubleMatParam.cpp - ./classes/Params/DoubleTransientMatParam.cpp - ./classes/Params/DoubleMatArrayParam.cpp - ./classes/Params/DoubleVecParam.cpp - ./classes/Params/StringParam.cpp - ./classes/Params/MatrixParam.cpp - ./classes/Params/VectorParam.cpp - ./classes/Params/TransientParam.cpp - ./classes/Params/DataSetParam.cpp - ./classes/Profiler.cpp - ./shared/Matrix/MatrixUtils.cpp - ./shared/io/Disk/pfopen.cpp - ./shared/io/Disk/pfclose.cpp - ./shared/io/Disk/WriteLockFile.cpp - ./shared/io/Print/PrintfFunction.cpp - ./shared/io/Comm/IssmComm.cpp - ./shared/LatLong/Ll2xyx.cpp - ./shared/LatLong/Xy2llx.cpp - ./shared/Enum/EnumToStringx.cpp - ./shared/Enum/StringToEnumx.cpp - ./shared/Numerics/Verbosity.cpp - ./shared/Numerics/GaussPoints.cpp - ./shared/Numerics/cross.cpp - ./shared/Numerics/isnan.cpp - ./shared/Numerics/cubic.cpp - ./shared/Numerics/extrema.cpp - ./shared/Numerics/XZvectorsToCoordinateSystem.cpp - ./shared/Exceptions/Exceptions.cpp - ./shared/Exceptions/exprintf.cpp - ./shared/Sorting/binary_search.cpp - ./shared/Elements/Paterson.cpp - ./shared/Elements/Arrhenius.cpp - ./shared/Elements/PrintArrays.cpp - ./shared/Elements/PddSurfaceMassBalance.cpp - ./shared/Elements/ComputeDelta18oTemperaturePrecipitation.cpp - ./shared/String/DescriptorIndex.cpp - ./toolkits/issm/IssmToolkitUtils.cpp - ./toolkits/issm/IssmSolver.cpp - ./toolkits/ToolkitOptions.cpp - ./modules/ModelProcessorx/ModelProcessorx.cpp - ./modules/ModelProcessorx/ElementsAndVerticesPartitioning.cpp - ./modules/ModelProcessorx/NodesPartitioning.cpp - ./modules/ModelProcessorx/EdgesPartitioning.cpp - ./modules/ModelProcessorx/SortDataSets.cpp - ./modules/ModelProcessorx/UpdateCounters.cpp - ./modules/ModelProcessorx/CreateDataSets.cpp - ./modules/ModelProcessorx/CreateParameters.cpp - ./modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp - ./modules/ModelProcessorx/CreateEdges.cpp - ./modules/ModelProcessorx/CreateElementToEdgeConnectivity.cpp - ./modules/ModelProcessorx/CreateSingleNodeToElementConnectivity.cpp - ./modules/ModelProcessorx/CreateNumberNodeToElementConnectivity.cpp - ./modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp - ./modules/ModelProcessorx/CreateNodes.cpp - ./modules/ParseToolkitsOptionsx/ParseToolkitsOptionsx.cpp - ./modules/NodesDofx/NodesDofx.cpp - ./modules/NodalValuex/NodalValuex.cpp - ./modules/VerticesDofx/VerticesDofx.cpp - ./modules/VertexCoordinatesx/VertexCoordinatesx.cpp - ./modules/OutputResultsx/OutputResultsx.cpp - ./modules/InputDuplicatex/InputDuplicatex.cpp - ./modules/InputScalex/InputScalex.cpp - ./modules/SurfaceAreax/SurfaceAreax.cpp - ./modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp - ./modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp - ./modules/IoModelToConstraintsx/IoModelToConstraintsx.cpp - ./modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp - ./modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp - ./modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp - ./modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp - ./modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp - ./modules/ConfigureObjectsx/ConfigureObjectsx.cpp - ./modules/ComputeBasalStressx/ComputeBasalStressx.cpp - ./modules/ComputeStrainRatex/ComputeStrainRatex.cpp - ./modules/SpcNodesx/SpcNodesx.cpp - ./modules/PositiveDegreeDayx/PositiveDegreeDayx.cpp - ./modules/Delta18oParameterizationx/Delta18oParameterizationx.cpp - ./modules/SmbGradientsx/SmbGradientsx.cpp - ./modules/Reducevectorgtofx/Reducevectorgtofx.cpp - ./modules/Reduceloadx/Reduceloadx.cpp - ./modules/ConstraintsStatex/ConstraintsStatex.cpp - ./modules/ResetConstraintsx/ResetConstraintsx.cpp - ./modules/ResetCoordinateSystemx/ResetCoordinateSystemx.cpp - ./modules/Solverx/Solverx.cpp - ./modules/VecMergex/VecMergex.cpp - ./modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp - ./cores/ProcessArguments.cpp - ./cores/ResetBoundaryConditions.cpp - ./cores/AnalysisConfiguration.cpp - ./cores/WrapperCorePointerFromSolutionEnum.cpp - ./cores/CorePointerFromSolutionEnum.cpp - ./cores/EnvironmentInit.cpp - ./cores/EnvironmentFinalize.cpp - ./cores/ad_core.cpp - ./solutionsequences/solutionsequence_linear.cpp - ./solutionsequences/solutionsequence_nonlinear.cpp - ./solutionsequences/solutionsequence_newton.cpp - ./solutionsequences/convergence.cpp - ./classes/Options/Options.cpp - ./classes/Options/OptionUtilities.cpp - ./classes/RiftStruct.cpp) -set(issm_sources ${core_sources}) -# }}} - -# DAKOTA sources {{{ -set(dakota_sources ./modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp - ./modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp - ./modules/InputUpdateFromMatrixDakotax/InputUpdateFromMatrixDakotax.cpp - ./modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp - ./modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp - ./cores/dakota_core.cpp - ./cores/DakotaSpawnCore.cpp) -#}}} -#Transient sources {{{ -set(transient_sources ./modules/ModelProcessorx/Transient/UpdateElementsTransient.cpp - ./cores/transient_core.cpp) -#}}} -#Steadystate sources {{{ -set(steadystate_sources ./cores/steadystate_core.cpp) -#}}} -#Prognostic sources {{{ -set(prognostic_sources ./modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp - ./modules/ModelProcessorx/Prognostic/CreateNodesPrognostic.cpp - ./modules/ModelProcessorx/Prognostic/CreateConstraintsPrognostic.cpp - ./modules/ModelProcessorx/Prognostic/CreateLoadsPrognostic.cpp - ./cores/prognostic_core.cpp) -#}}} -#Thermal sources {{{ -set(thermal_sources ./modules/ModelProcessorx/Thermal/UpdateElementsThermal.cpp - ./modules/ModelProcessorx/Thermal/CreateNodesThermal.cpp - ./modules/ModelProcessorx/Thermal/CreateConstraintsThermal.cpp - ./modules/ModelProcessorx/Thermal/CreateLoadsThermal.cpp - ./modules/ModelProcessorx/Enthalpy/UpdateElementsEnthalpy.cpp - ./modules/ModelProcessorx/Enthalpy/CreateNodesEnthalpy.cpp - ./modules/ModelProcessorx/Enthalpy/CreateConstraintsEnthalpy.cpp - ./modules/ModelProcessorx/Enthalpy/CreateLoadsEnthalpy.cpp - ./modules/ModelProcessorx/Melting/UpdateElementsMelting.cpp - ./modules/ModelProcessorx/Melting/CreateNodesMelting.cpp - ./modules/ModelProcessorx/Melting/CreateConstraintsMelting.cpp - ./modules/ModelProcessorx/Melting/CreateLoadsMelting.cpp - ./modules/ConstraintsStatex/ThermalConstraintsState.cpp - ./modules/ConstraintsStatex/ThermalIsPresent.cpp - ./modules/ResetConstraintsx/ThermalConstraintsReset.cpp - ./cores/thermal_core.cpp - ./solutionsequences/solutionsequence_thermal_nonlinear.cpp) -#}}} -#Control sources {{{ -set(control_sources ./modules/ControlInputGetGradientx/ControlInputGetGradientx.cpp - ./modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp - ./modules/ControlInputScaleGradientx/ControlInputScaleGradientx.cpp - ./modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.cpp - ./modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp - ./modules/ModelProcessorx/Control/CreateParametersControl.cpp - ./modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp - ./modules/InputControlUpdatex/InputControlUpdatex.cpp - ./modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp - ./modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp - ./modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp - ./modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp - ./modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp - ./modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp - ./modules/Orthx/Orthx.cpp - ./modules/Gradjx/Gradjx.cpp - ./modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp - ./modules/ThicknessAlongGradientx/ThicknessAlongGradientx.cpp - ./modules/ThicknessAcrossGradientx/ThicknessAcrossGradientx.cpp - ./modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp - ./classes/Inputs/ControlInput.cpp - ./shared/Numerics/BrentSearch.cpp - ./shared/Numerics/OptimalSearch.cpp - ./cores/control_core.cpp - ./cores/controltao_core.cpp - ./cores/objectivefunction.cpp - ./cores/gradient_core.cpp - ./cores/adjointdiagnostic_core.cpp - ./cores/adjointbalancethickness_core.cpp - ./cores/AdjointCorePointerFromSolutionEnum.cpp - ./solutionsequences/solutionsequence_adjoint_linear.cpp) -#}}} -#Hydrology sources {{{ -set(hydrology_sources ./modules/ModelProcessorx/HydrologyShreve/UpdateElementsHydrologyShreve.cpp - ./modules/ModelProcessorx/HydrologyShreve/CreateNodesHydrologyShreve.cpp - ./modules/ModelProcessorx/HydrologyShreve/CreateConstraintsHydrologyShreve.cpp - ./modules/ModelProcessorx/HydrologyShreve/CreateLoadsHydrologyShreve.cpp - ./modules/ModelProcessorx/HydrologyShreve/CreateParametersHydrologyShreve.cpp - ./modules/ModelProcessorx/HydrologyDCInefficient/UpdateElementsHydrologyDCInefficient.cpp - ./modules/ModelProcessorx/HydrologyDCInefficient/CreateNodesHydrologyDCInefficient.cpp - ./modules/ModelProcessorx/HydrologyDCInefficient/CreateConstraintsHydrologyDCInefficient.cpp - ./modules/ModelProcessorx/HydrologyDCInefficient/CreateLoadsHydrologyDCInefficient.cpp - ./modules/ModelProcessorx/HydrologyDCInefficient/CreateParametersHydrologyDCInefficient.cpp - ./modules/ModelProcessorx/HydrologyDCEfficient/UpdateElementsHydrologyDCEfficient.cpp - ./modules/ModelProcessorx/HydrologyDCEfficient/CreateNodesHydrologyDCEfficient.cpp - ./modules/ModelProcessorx/HydrologyDCEfficient/CreateConstraintsHydrologyDCEfficient.cpp - ./modules/ModelProcessorx/HydrologyDCEfficient/CreateLoadsHydrologyDCEfficient.cpp - ./modules/ModelProcessorx/HydrologyDCEfficient/CreateParametersHydrologyDCEfficient.cpp - ./cores/hydrology_core.cpp - ./solutionsequences/solutionsequence_hydro_nonlinear.cpp) -#}}} -#Diagnostic sources {{{ -set(diagnostic_sources ./modules/ModelProcessorx/DiagnosticHoriz/UpdateElementsDiagnosticHoriz.cpp - ./modules/ModelProcessorx/DiagnosticHoriz/CreateNodesDiagnosticHoriz.cpp - ./modules/ModelProcessorx/DiagnosticHoriz/CreateConstraintsDiagnosticHoriz.cpp - ./modules/ModelProcessorx/DiagnosticHoriz/CreateLoadsDiagnosticHoriz.cpp - ./modules/ModelProcessorx/DiagnosticVert/UpdateElementsDiagnosticVert.cpp - ./modules/ModelProcessorx/DiagnosticVert/CreateNodesDiagnosticVert.cpp - ./modules/ModelProcessorx/DiagnosticVert/CreateConstraintsDiagnosticVert.cpp - ./modules/ModelProcessorx/DiagnosticVert/CreateLoadsDiagnosticVert.cpp - ./modules/ModelProcessorx/DiagnosticHutter/UpdateElementsDiagnosticHutter.cpp - ./modules/ModelProcessorx/DiagnosticHutter/CreateNodesDiagnosticHutter.cpp - ./modules/ModelProcessorx/DiagnosticHutter/CreateConstraintsDiagnosticHutter.cpp - ./modules/ModelProcessorx/DiagnosticHutter/CreateLoadsDiagnosticHutter.cpp - ./cores/diagnostic_core.cpp - ./solutionsequences/solutionsequence_stokescoupling_nonlinear.cpp) -#}}} -#Balanced sources {{{ -set(balanced_sources ./modules/ModelProcessorx/Balancethickness/UpdateElementsBalancethickness.cpp - ./modules/ModelProcessorx/Balancethickness/CreateNodesBalancethickness.cpp - ./modules/ModelProcessorx/Balancethickness/CreateConstraintsBalancethickness.cpp - ./modules/ModelProcessorx/Balancethickness/CreateLoadsBalancethickness.cpp - ./cores/balancethickness_core.cpp - ./cores/dummy_core.cpp) -#}}} -#Slope sources {{{ -set(slope_sources ./modules/ModelProcessorx/BedSlope/UpdateElementsBedSlope.cpp - ./modules/ModelProcessorx/BedSlope/CreateNodesBedSlope.cpp - ./modules/ModelProcessorx/BedSlope/CreateConstraintsBedSlope.cpp - ./modules/ModelProcessorx/BedSlope/CreateLoadsBedSlope.cpp - ./modules/ModelProcessorx/SurfaceSlope/UpdateElementsSurfaceSlope.cpp - ./modules/ModelProcessorx/SurfaceSlope/CreateNodesSurfaceSlope.cpp - ./modules/ModelProcessorx/SurfaceSlope/CreateConstraintsSurfaceSlope.cpp - ./modules/ModelProcessorx/SurfaceSlope/CreateLoadsSurfaceSlope.cpp - ./cores/surfaceslope_core.cpp - ./cores/bedslope_core.cpp) -#}}} -#Gia sources {{{ -set(gia_sources ./cores/gia_core.cpp - ./modules/ModelProcessorx/Gia/UpdateElementsGia.cpp - ./modules/ModelProcessorx/Gia/CreateNodesGia.cpp - ./modules/ModelProcessorx/Gia/CreateConstraintsGia.cpp - ./modules/ModelProcessorx/Gia/CreateLoadsGia.cpp - ./modules/GiaDeflectionCorex/GiaDeflectionCorex.cpp - ./modules/GiaDeflectionCorex/distme.f - ./modules/GiaDeflectionCorex/freed.f - ./modules/GiaDeflectionCorex/ojrule.f - ./modules/GiaDeflectionCorex/pwise.f - ./modules/GiaDeflectionCorex/qwise.f - ./modules/GiaDeflectionCorex/stot.f - ./modules/GiaDeflectionCorex/what0.f - ) -#}}} -#Groundingline sources {{{ -set(groundingline_sources ./modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp - ) -#}}} -#Rifts sources {{{ -set(rifts_sources ./classes/Loads/Riftfront.cpp - ./modules/ConstraintsStatex/RiftConstraintsState.cpp) -#}}} -#Android sources {{{ -set(android_sources ) -#}}} -#3D sources {{{ -set(threed_sources ./classes/gauss/GaussPenta.cpp - ./classes/Inputs/PentaInput.cpp - ./classes/Elements/Penta.cpp - ./classes/Elements/PentaRef.cpp) -#}}} -#Bamg sources {{{ -set(bamg_sources ./bamg/BamgGeom.cpp - ./bamg/BamgMesh.cpp - ./bamg/BamgOpts.cpp - ./bamg/CrackedEdge.cpp - ./bamg/Curve.cpp - ./bamg/Direction.cpp - ./bamg/Edge.cpp - ./bamg/GeomEdge.cpp - ./bamg/GeomSubDomain.cpp - ./bamg/GeomVertex.cpp - ./bamg/Geometry.cpp - ./bamg/ListofIntersectionTriangles.cpp - ./bamg/EigenMetric.cpp - ./bamg/Metric.cpp - ./bamg/BamgQuadtree.cpp - ./bamg/SetOfE4.cpp - ./bamg/SubDomain.cpp - ./bamg/AdjacentTriangle.cpp - ./bamg/Triangle.cpp - ./bamg/det.h - ./bamg/BamgVertex.cpp - ./bamg/VertexOnEdge.cpp - ./bamg/VertexOnGeom.cpp - ./bamg/VertexOnVertex.cpp - ./bamg/Mesh.cpp - ./shared/Bamg/Abs.h - ./shared/Bamg/BigPrimeNumber.cpp - ./shared/Bamg/BinaryRand.h - ./shared/Bamg/Exchange.h - ./shared/Bamg/extrema.h - ./shared/Bamg/HeapSort.h - ./shared/Bamg/OppositeAngle.h - ./modules/Bamgx/Bamgx.cpp - ./modules/BamgConvertMeshx/BamgConvertMeshx.cpp - ./modules/BamgTriangulatex/BamgTriangulatex.cpp - ) -#}}} -#Kriging sources {{{ -set(kriging_sources ./classes/kriging/Observations.cpp - ./classes/kriging/Variogram.h - ./classes/kriging/GaussianVariogram.cpp - ./classes/kriging/ExponentialVariogram.cpp - ./classes/kriging/SphericalVariogram.cpp - ./classes/kriging/PowerVariogram.cpp - ./classes/kriging/Quadtree.cpp - ./classes/kriging/Observation.cpp - ./modules/Krigingx/Krigingx.cpp - ./modules/Krigingx/Kriging -#For parallel kriging, only difference is ./modules/Krigingx/pKrigingx.cpp with no multithreading -set(pkriging_sources ./classes/kriging/Observations.cpp - ./classes/kriging/Variogram.h - ./classes/kriging/GaussianVariogram.cpp - ./classes/kriging/ExponentialVariogram.cpp - ./classes/kriging/SphericalVariogram.cpp - ./classes/kriging/PowerVariogram.cpp - ./classes/kriging/Quadtree.cpp - ./classes/kriging/Observation.cpp - ./modules/Krigingx/pKrigingx.cpp - ) -#}}} -#Kml sources {{{ -set(kml_sources ./modules/Exp2Kmlx/Exp2Kmlx.cpp - ./modules/Kml2Expx/Kml2Expx.cpp - ./modules/Shp2Expx/Shp2Expx.cpp - ./modules/Shp2Kmlx/Shp2Kmlx.cpp - ./modules/KMLFileReadx/KMLFileReadx.cpp - ./modules/KMLMeshWritex/KMLMeshWritex.cpp - ./modules/KMLOverlayx/KMLOverlayx.cpp - ./kml/KML_Attribute.cpp - ./kml/KML_Comment.cpp - ./kml/KML_ColorStyle.cpp - ./kml/KML_Container.cpp - ./kml/KML_Document.cpp - ./kml/KML_Feature.cpp - ./kml/KML_File.cpp - ./kml/KML_Folder.cpp - ./kml/KML_Geometry.cpp - ./kml/KML_GroundOverlay.cpp - ./kml/KML_Icon.cpp - ./kml/KML_LatLonBox.cpp - ./kml/KML_LinearRing.cpp - ./kml/KML_LineString.cpp - ./kml/KML_LineStyle.cpp - ./kml/KML_MultiGeometry.cpp - ./kml/KML_Object.cpp - ./kml/KML_Overlay.cpp - ./kml/KML_Point.cpp - ./kml/KML_Placemark.cpp - ./kml/KML_Polygon.cpp - ./kml/KML_PolyStyle.cpp - ./kml/KML_Style.cpp - ./kml/KML_StyleSelector.cpp - ./kml/KML_SubStyle.cpp - ./kml/KML_Unknown.cpp - ./kml/KMLFileReadUtils.cpp - ) -#}}} -#Petsc sources {{{ -petsc_sources= ./toolkits/petsc - ./toolkits/petsc/patches - ./toolkits/petsc/patches/VecToMPISerial.cpp - ./toolkits/petsc/patches/MatToSerial.cpp - ./toolkits/petsc/patches/VecMerge.cpp - ./toolkits/petsc/patches/NewVec.cpp - ./toolkits/petsc/patches/PetscOptionsDetermineSolverType.cpp - ./toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp - ./toolkits/petsc/patches/NewMat.cpp - ./toolkits/petsc/patches/VecFree.cpp - ./toolkits/petsc/patches/KSPFree.cpp - ./toolkits/petsc/patches/MatFree.cpp - ./toolkits/petsc/patches/MatMultPatch.cpp - ./toolkits/petsc/patches/ISSMToPetscMatrixType.cpp - ./toolkits/petsc/patches/ISSMToPetscInsertMode.cpp - ./toolkits/petsc/patches/ISSMToPetscNormMode.cpp - ./toolkits/petsc/objects/PetscMat.cpp - ./toolkits/petsc/objects/PetscVec.cpp - ./toolkits/petsc/objects/PetscSolver.cpp - ) -#}}} -#Mumps sources {{{ -set(mumps_sources ./toolkits/mumps - ./toolkits/mumps/MpiDenseMumpsSolve.cpp) -#}}} -#Gsl sources {{{ -set(gsl_sources ./toolkits/gsl/DenseGslSolve.cpp) -#}}} -#Mpi sources {{{ -set(mpi_sources ./toolkits/mpi/patches/DetermineLocalSize.cpp - ./toolkits/mpi/patches/DetermineGlobalSize.cpp - ./toolkits/mpi/patches/DetermineRowRankFromLocalSize.cpp - ./toolkits/mpi/patches/GetOwnershipBoundariesFromRange.cpp - ) -#}}} -#Metis sources {{{ -set(metis_sources ./toolkits/metis/patches/METIS_PartMeshNodalPatch.cpp) -#}}} - -# API Print {{{ -if(NOT PYTHON AND NOT MATLAB) - add_library(ISSMOverload STATIC ./shared/String/ApiPrintf.cpp) - list(APPEND issm_deps ISSMOverload) -else(NOT PYTHON AND NOT MATLAB) - message(FATAL_ERROR "Python and Matlab are not supported yet.") -endif(NOT PYTHON AND NOT MATLAB) -# }}} - -# Modules Sources {{{ -set(modules_sources ./shared/Threads/LaunchThread.cpp - ./shared/Threads/PartitionRange.cpp - ./shared/Exp/exp.cpp - ./shared/TriMesh/AssociateSegmentToElement.cpp - ./shared/TriMesh/GridInsideHole.cpp - ./shared/TriMesh/OrderSegments.cpp - ./shared/TriMesh/SplitMeshForRifts.cpp - ./shared/TriMesh/TriMeshUtils.cpp - ./modules/Chacox/Chacox.cpp - ./modules/Chacox/input_parse.cpp - ./modules/Chacox/chaco_seconds.cpp - ./modules/Chacox/user_params.cpp - ./modules/TriaSearchx/TriaSearchx.cpp - ./modules/TriMeshx/TriMeshx.cpp - ./modules/TriMeshProcessRiftsx/TriMeshProcessRiftsx.cpp - ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.cpp - ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsxt.cpp - ./modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp - ./modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp - ./modules/InterpFromMesh2dx/InterpFromMesh2dxt.cpp - ./modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp - ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp - ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.cpp - ./modules/HoleFillerx/HoleFillerx.cpp - ./modules/EdgeDetectionx/EdgeDetectionx.cpp - ./modules/AverageFilterx/AverageFilterx.cpp - ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.cpp - ./modules/ContourToMeshx/ContourToMeshx.cpp - ./modules/ContourToMeshx/ContourToMeshxt.cpp - ./modules/ContourToNodesx/ContourToNodesx.cpp - ./modules/Reducevectorgtosx/Reducevectorgtosx.cpp - ./modules/NodeConnectivityx/NodeConnectivityx.cpp - ./modules/ElementConnectivityx/ElementConnectivityx.cpp - ./modules/Scotchx/Scotchx.cpp - ./modules/PropagateFlagsFromConnectivityx/PropagateFlagsFromConnectivityx.cpp) -# }}} - -#{{{ Conditional build-up of sources -#ISSM sources are a combination of core sources and sources related to specific capabilities. - -if(DAKOTA) -list(APPEND CPP_FLAGS '-D_HAVE_DAKOTA_') -list(APPEND issm_sources ${dakota_sources}) -endif(DAKOTA) - -if(PETSC) -list(APPEND CPP_FLAGS '-D_HAVE_PETSC_') -list(APPEND issm_sources ${petsc_sources}) -endif(PETSC) - -if(MUMPS) -list(APPEND CPP_FLAGS '-D_HAVE_MUMPS_') -list(APPEND issm_sources ${mumps_sources}) -endif(MUMPS) - -if(GSL) -list(APPEND CPP_FLAGS '-D_HAVE_GSL_') -list(APPEND issm_sources ${gsl_sources}) -list(APPEND issm_deps gsl gslcblas) -list(APPEND issm_lib_paths ${GSL_LIB_DIR}) -include_directories(AFTER ${GSL_INC_DIR}) -message("GSL_INC: ${GSL_INC_DIR}") -message("GSL_LIB: ${GSL_LIB_DIR}") -endif(GSL) - -if(TRANSIENT) -list(APPEND CPP_FLAGS '-D_HAVE_TRANSIENT_') -list(APPEND issm_sources ${transient_sources}) -endif(TRANSIENT) - -if(STEADYSTATE) -list(APPEND CPP_FLAGS '-D_HAVE_STEADYSTATE_') -list(APPEND issm_sources ${steadystate_sources}) -endif(STEADYSTATE) - -if(PROGNOSTIC) -list(APPEND CPP_FLAGS '-D_HAVE_PROGNOSTIC_') -list(APPEND issm_sources ${prognostic_sources}) -endif(PROGNOSTIC) - -if(THERMAL) -list(APPEND CPP_FLAGS '-D_HAVE_THERMAL_') -list(APPEND issm_sources ${thermal_sources}) -endif(THERMAL) - -if(GIA) -list(APPEND CPP_FLAGS '-D_HAVE_GIA_') -list(APPEND issm_sources ${gia_sources}) -endif(GIA) - -if(CONTROL) -list(APPEND CPP_FLAGS '-D_HAVE_CONTROL_') -list(APPEND issm_sources ${control_sources}) -endif(CONTROL) - -if(HYDROLOGY) -list(APPEND CPP_FLAGS '-D_HAVE_HYDROLOGY_') -list(APPEND issm_sources ${hydrology_sources}) -endif(HYDROLOGY) - -if(DIAGNOSTIC) -list(APPEND CPP_FLAGS '-D_HAVE_DIAGNOSTIC_') -list(APPEND issm_sources ${diagnostic_sources}) -endif(DIAGNOSTIC) - -if(BALANCED) -list(APPEND CPP_FLAGS '-D_HAVE_BALANCED_') -list(APPEND issm_sources ${balanced_sources}) -endif(BALANCED) - -if(SLOPE) -list(APPEND CPP_FLAGS '-D_HAVE_SLOPE_') -list(APPEND issm_sources ${slope_sources}) -endif(SLOPE) - -if(GROUNDINGLINE) -list(APPEND CPP_FLAGS '-D_HAVE_GROUNDINGLINE_') -list(APPEND issm_sources ${groundingline_sources}) -endif(GROUNDINGLINE) - -if(RIFTS) -list(APPEND CPP_FLAGS '-D_HAVE_RIFTS_') -list(APPEND issm_sources ${rifts_sources}) -endif(RIFTS) - -if(ANDROID) -list(APPEND CPP_FLAGS '-D_HAVE_ANDROID_') -list(APPEND issm_sources ${android_sources}) -endif(ANDROID) - -if(THREED) -list(APPEND CPP_FLAGS '-D_HAVE_THREED_') -list(APPEND issm_sources ${threed_sources}) -endif(THREED) - -if(MPI) -list(APPEND CPP_FLAGS '-D_HAVE_MPI_') -list(APPEND issm_sources ${mpi_sources}) -endif(MPI) - -if(METIS) -list(APPEND CPP_FLAGS '-D_HAVE_METIS_') -list(APPEND issm_sources ${metis_sources}) -endif(METIS) - -if(KRIGING) -list(APPEND CPP_FLAGS '-D_HAVE_KRIGING_') -list(APPEND issm_sources ${pkriging_sources}) -endif(KRIGING) -#}}} - -add_library(ISSMCore STATIC ${issm_sources}) -add_library(ISSMModules STATIC ${modules_sources}) - -list(INSERT issm_deps 0 ISSMCore ISSMModules) -add_executable(issm ./main/issm.cpp) - -# Definitions {{{ -add_definitions(${CPP_FLAGS}) -# }}} -# Compilation Flags {{{ -# }}} -# Linking Flags {{{ -link_directories($ENV{ISSM_DIR}/src/c ) -target_link_libraries(issm ${issm_deps}) -message("ISSM_DEPS: ${issm_deps}") -# }}} - -# Install Targets {{{ -# Install 'issm.exe' -install(TARGETS issm RUNTIME DESTINATION $ENV{ISSM_DIR}/bin) - -# Install 'libISSMCore.a' and 'libISSMOverload.a' -install(TARGETS ISSMCore - ISSMModules - ISSMOverload - ARCHIVE DESTINATION $ENV{ISSM_DIR}/lib) -# }}} -# Optional Install {{{ -#if(${SHARED_LIBS} IS ON) -# install(TARGETS ISSMCore -# ISSMOverload -# LIBRARY) -#endif(${SHARED_LIBS} IS ON) -# }}}