Index: /issm/trunk-jpl/jenkins/imac
===================================================================
--- /issm/trunk-jpl/jenkins/imac	(revision 16616)
+++ /issm/trunk-jpl/jenkins/imac	(revision 16616)
@@ -0,0 +1,105 @@
+#
+########### Configuration file for Eric Larour's Jenkins run on MaxOSX ############
+
+#-------------------------------#
+# 1: ISSM general configuration #
+#-------------------------------#
+
+#Nightly run name
+NAME="ISSM matlab tests on MacOSX"
+
+#ISSM Architecture
+ISSM_ARCH="macosx-gnu"
+
+#ISSM CONFIGURATION 
+ISSM_CONFIG='--prefix=$ISSM_DIR \
+	--with-matlab-dir=$MATLAB_DIR \
+	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
+	--with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
+	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
+	--with-mpi-libflags=" $ISSM_DIR/externalpackages/mpich/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpl.a " \
+	--with-fortran-lib="/usr/local/gfortran/lib/libgfortran.a" \
+	--with-math-lib="/usr/lib/libm.dylib" \
+	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
+	--with-cxxoptflags=" -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w "\
+	--with-numthreads=8 \
+	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  \
+	--with-petsc-arch=$ISSM_ARCH \
+	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
+	--with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
+	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install \
+	--with-tao-dir=$ISSM_DIR/externalpackages/tao/install'
+
+#MATLAB path
+MATLAB_PATH="/Applications/MATLAB_R2011b.app/"
+
+#PYTHON and MATLAB testing
+MATLAB_TEST=1
+PYTHON_TEST=0
+
+#execution path used for parallel runs
+EXECUTION_PATH=$ISSM_DIR/execution
+
+#-----------------------------------#
+# 3: External packages installation #
+#-----------------------------------#
+
+#ISSM_EXTERNALPACKAGES can have 3 values:
+# - "install" install all external packages listed below
+# - "copy"    copy existing directories (EXTERNALPACKAGESDIR)
+# - "none"    leave external packages as is
+#             ->skip to section 4
+ISSM_EXTERNALPACKAGES="install"
+EXTERNALPACKAGESDIR=$ISSM_DIR/externalpackages
+
+#List of external pakages to be installed and their installation scripts
+EXTERNALPACKAGES="autotools install.sh                
+						matlab    install.sh                
+						mpich     install-3.0-macosx64.sh    
+						cmake     install.sh                
+						petsc     install-3.4-macosx64.sh    
+						tao       install-2.2.sh
+						triangle  install-macosx64.sh 
+						shell2junit  install.sh "
+
+
+#---------------------#
+# 4: ISSM Compilation #
+#---------------------#
+
+#ISSM_COMPILATION can have 2 values:
+# - "yes" compile ISSM
+# - "no"  do not compile ISSM
+ISSM_COMPILATION="yes"
+
+#----------------------#
+# 5: Mail notification #
+#----------------------#
+
+#Mail delivery. If SKIPMAIL="no", the html nightly run report will be
+#sent to the adresses present in $ISSM_DIR/cron/mailinglist.
+SKIPMAIL="no"
+
+#Sender email address
+EMAIL_ADRESS="eric.larour@jpl.nasa.gov"
+
+#Mailing list
+MAILINGLIST="eric.larour@jpl.nasa.gov"
+
+#------------------------#
+# 6: Nightly run options #
+#------------------------#
+
+#number of cpus used in ISSM installation and compilation (one is usually
+#safer as some packages are very sensitive to parallel compilation)
+NUMCPUS_INSTALL=8
+
+#number of cpus used in the nightly runs.
+NUMCPUS_RUN=1
+
+#Nightly run options. The matlab routine runme.m will be called
+#as follows: runme($MATLAB_NROPTIONS). The options must be understandable
+#by Matlab and runme.m
+#ex: "'id',[101 102 103]"
+MATLAB_NROPTIONS=""
+PYTHON_NROPTIONS=""
Index: /issm/trunk-jpl/jenkins/jenkins.sh
===================================================================
--- /issm/trunk-jpl/jenkins/jenkins.sh	(revision 16616)
+++ /issm/trunk-jpl/jenkins/jenkins.sh	(revision 16616)
@@ -0,0 +1,316 @@
+#!/bin/bash
+#This bash script calls the nightlyrun.m matlab file to run our nightly test decks. 
+#It then processes the results and sends an email to the Ice developpers.
+
+#some functions
+function timer() #{{{
+{
+	if [[ $# -eq 0 ]]; then
+		echo $(date '+%s')
+	else
+		local  stime=$1
+		etime=$(date '+%s')
+
+		if [[ -z "$stime" ]]; then stime=$etime; fi
+
+		dt=$((etime - stime))
+		ds=$((dt % 60))
+		dm=$(((dt / 60) % 60))
+		dh=$((dt / 3600))
+		printf '%d:%02d:%02d' $dh $dm $ds
+	fi
+} #}}}
+function todaydate() #{{{
+{
+	suffix=`date | awk '{printf("%s-%s-%s  %s",$2,$3,$6,$4);}'`			 
+	echo $suffix;			 
+} #}}}
+function host_name() #{{{
+{
+	#return host name depending on the OS
+	if [ "$1" = "win7" ] 
+	then
+		HOST_NAME=`hostname | sed 's/-//g'`;
+	else
+		HOST_NAME=`hostname -s | sed 's/-//g'`;
+	fi
+	echo $HOST_NAME;
+} #}}}
+function pause() #{{{
+{
+pid=`ps aux -W | grep $1 | awk '{printf("%s\n",$1);}'`
+
+while [ -n "$pid" ]
+do
+	pid=`ps aux -W | grep $1 | awk '{printf("%s\n",$1);}'`
+done
+}
+#}}}
+
+#Get configuration
+#Source config file{{{
+if [ $# -ne 1 ];
+then
+	#no config file specified: exit
+	echo "no config file specified. Exiting..." >&2 # Error message to stderr.
+	exit 1
+fi
+if [ ! -f "$1" ]
+then
+	echo "File $1 not found!" >&2   # Error message to stderr.
+	exit 1
+fi 
+source $1;
+#}}}
+#Initialize variables {{{
+TODAY=$(todaydate);
+HOST_NAME=$(host_name $OS);
+OS=$(uname -s)
+START_TIME=$(timer);
+ISSM_RELEASE=$(basename $(echo $REPOSITORY));
+USER=$(whoami);
+INIT_PATH=$(pwd);
+#}}}
+
+#Installation ISSM
+#create matlab's installation sript {{{
+cat << END > $ISSM_DIR/externalpackages/matlab/install.sh
+#!/bin/bash
+rm -rf install
+ln -s $MATLAB_PATH install
+END
+#}}}
+#install/copy/none external packages    (ISSM_EXTERNALPACKAGES){{{
+if [ "$ISSM_EXTERNALPACKAGES" == "install" ]
+then
+	
+	cd $ISSM_DIR/externalpackages
+
+	#number of packages: 
+	NUMPACKAGES=$(($(echo $EXTERNALPACKAGES | wc -w )/2))
+
+	for ((i=1;i<=$NUMPACKAGES;i++))
+	do
+		NUM1=$((2*$i-1))
+		NUM2=$((2*$i))
+		PACKAGENAME=$(echo $EXTERNALPACKAGES | cut -d " " -f $NUM1-$NUM1)
+		PACKAGEINST=$(echo $EXTERNALPACKAGES | cut -d " " -f $NUM2-$NUM2)
+
+		cd $PACKAGENAME
+		echo "======================================================";
+		echo "       Installing $PACKAGENAME                        ";
+		echo "======================================================";
+		./$PACKAGEINST |  tee compil.log
+		if [ $? -ne 0 ]; then
+			echo "======================================================";
+			echo "    ERROR: installation of $PACKAGENAME failed        ";
+			echo "======================================================";
+		fi
+		source $ISSM_DIR/etc/environment.sh
+		cd ..
+	done
+
+elif [ "$ISSM_EXTERNALPACKAGES" == "copy" ]
+then
+	cd $ISSM_DIR
+	rm -rf externalpackages
+	cp -Rf $EXTERNALPACKAGESDIR ./
+elif [ "$ISSM_EXTERNALPACKAGES" == "link" ]
+then
+	cd $ISSM_DIR
+	rm -rf externalpackages
+	ln -s  $EXTERNALPACKAGESDIR  .
+elif [ "$ISSM_EXTERNALPACKAGES" == "none" ]
+then
+	echo "Skipping external packages installation"
+else
+	echo "ISSM_EXTERNALPACKAGES supported values are: install, copy and none. Exiting..." >&2 # Error message to stderr.
+	exit 1
+fi
+source $ISSM_DIR/etc/environment.sh
+#}}}
+#ISSM compilation yes/no                (ISSM_COMPILATION) {{{
+if [ "$ISSM_COMPILATION" == "yes" ]
+then
+	cd $ISSM_DIR
+	make uninstall
+	make clean
+	make distclean
+	./scripts/automakererun.sh
+	cat > configure.sh << EOF
+./configure $ISSM_CONFIG
+EOF
+	chmod 700 configure.sh
+	./configure.sh
+
+	#4: compile and install ISSM
+	if [ $NUMCPUS_INSTALL -gt 1 ]
+	then
+		echo "Making with " $NUMCPUS_INSTALL " cpus"
+		make -j $NUMCPUS_INSTALL install
+	else
+		make install
+	fi
+elif [ "$ISSM_COMPILATION" == "no" ]
+then
+	echo "Skipping ISSM compilation"
+else
+	echo "ISSM_COMPILATION supported values are: yes and no. Exiting..." >&2 # Error message to stderr.
+	exit 1
+fi
+#}}}
+
+#shell2junit {{{
+source $ISSM_DIR/externalpackages/shell2junit/install/sh2ju.sh
+#}}}
+
+#Prepare info.log
+#{{{
+rm -rf $ISSM_DIR/nightlylog
+mkdir  $ISSM_DIR/nightlylog
+INSTALL_TIME=$(timer)
+ELAPSED=$(timer $START_TIME)
+VERSION=$(svnversion $ISSM_DIR)
+cat << END > $ISSM_DIR/nightlylog/info.log
+name:      $(echo $NAME)
+today:     $(echo $TODAY)
+user:      $(echo $USER)
+host:      $(echo $HOST_NAME)
+OS:        $(echo $OS)
+release:   $(echo $ISSM_RELEASE)
+init_path: $(echo $INIT_PATH)
+is_matlab: $(echo $MATLAB_TEST)
+is_python: $(echo $PYTHON_TEST)
+elapsed_install: $(echo $ELAPSED)
+version: $(echo $VERSION)
+END
+#}}}
+
+#matlab tests
+if [ $MATLAB_TEST -eq 1 ]; then
+#Launch all tests on different cpus {{{
+MATLAB_START_TIME=$(timer);
+for (( i=1;i<=$NUMCPUS_RUN;i++ ))
+do
+	#Launch matlab and the nightly run script
+	cat > $ISSM_DIR/nightlylog/matlab_run$i.m << EOF
+	warning off %necessary to avoid a info.log of several Go for parallel runs
+	try,
+	$(if [ "$MATLAB_NROPTIONS" = ""  ]
+	then
+		echo "runme('output','nightly','rank',$i,'numprocs',$NUMCPUS_RUN);"
+	else
+		echo "runme($MATLAB_NROPTIONS,'output','nightly','rank',$i,'numprocs',$NUMCPUS_RUN);"
+	fi
+	)
+	catch me,
+		%An error occured, get report and exit
+		message=getReport(me)
+		directory=strsplit(pwd,'/');
+		fid=fopen([issmdir '/nightlylog/matlaberror.log'], 'at');
+		fprintf(fid,'\nMatlab error occured in: %s\n\n',directory{end});
+		fprintf(fid,'%s',message);
+		fclose(fid);
+	end
+	disp('MATLABEXITEDCORRECTLY');
+	exit
+EOF
+	cd $ISSM_DIR/test/NightlyRun
+	matlab -nojvm -nosplash -r "addpath $ISSM_DIR/src/m/dev; devpath; addpath $ISSM_DIR/nightlylog/; matlab_run$i" -logfile $ISSM_DIR/nightlylog/matlab_log$i.log &
+done
+
+#wait until matlab closes
+if [ "$OS" = "win7" ]; then
+	pause MATLAB
+else
+	wait
+fi
+
+#concatenate reports
+cd $ISSM_DIR/nightlylog/
+rm matlab_log.log
+for (( i=1;i<=$NUMCPUS_RUN;i++ ))
+do
+	cat matlab_log$i.log >> matlab_log.log
+done
+
+#filter out windows characters: 
+cat matlab_log.log | tr -cd '\11\12\40-\176' > matlab_log.log2 && mv matlab_log.log2 matlab_log.log
+
+#}}}
+#Complete info.log {{{
+if [ $(cat matlab_log.log | grep "MATLABEXITEDCORRECTLY" | wc -l) -eq $NUMCPUS_RUN ]
+then
+	MATLABCRASH=0
+else
+	MATLABCRASH=1
+fi
+ELAPSED=$(timer $MATLAB_START_TIME)
+cat << END >>  $ISSM_DIR/nightlylog/info.log
+elapsed_matlab: $(echo $ELAPSED)
+matlab_crash:   $(echo $MATLABCRASH)
+END
+#}}}
+fi
+
+#python tests
+if [ $PYTHON_TEST -eq 1 ]; then
+#Launch all tests on different cpus {{{
+PYTHON_START_TIME=$(timer);
+export PYTHONSTARTUP=$ISSM_DIR/src/m/dev/devpath.py
+for (( i=1;i<=$NUMCPUS_RUN;i++ ))
+do
+	cd $ISSM_DIR/test/NightlyRun
+	./runme.py --output=nightly --rank=$i --numprocs=$NUMCPUS_RUN $PYTHON_NROPTIONS 2>&1 > $ISSM_DIR/nightlylog/python_log$i.log &
+done
+
+#wait until python closes
+if [ "$OS" = "win7" ]; then
+	pause MATLAB
+else
+	wait
+fi
+
+#concatenate reports
+cd $ISSM_DIR/nightlylog/
+rm python_log.log
+for (( i=1;i<=$NUMCPUS_RUN;i++ ))
+do
+	cat python_log$i.log >> python_log.log
+done
+#}}}
+#Complete info.log {{{
+if [ $(cat python_log.log | grep "PYTHONEXITEDCORRECTLY" | wc -l) -eq $NUMCPUS_RUN ]
+then
+	PYTHONCRASH=0
+else
+	PYTHONCRASH=1
+fi
+ELAPSED=$(timer $PYTHON_START_TIME)
+cat << END >>  $ISSM_DIR/nightlylog/info.log
+elapsed_python: $(echo $ELAPSED)
+python_crash:   $(echo $PYTHONCRASH)
+END
+#}}}
+fi
+
+#complete info.log
+#{{{
+ELAPSED=$(timer $START_TIME)
+cat << END >>  $ISSM_DIR/nightlylog/info.log
+elapsed_total:  $(echo $ELAPSED)
+END
+#}}}
+
+#process logs to be junit compatible
+#{{{
+cd $ISSM_DIR/nightlylog/
+juLogClean
+
+rm -rf juLogFile && cat matlab_log.log | grep "test id" > juLogFile
+
+while read i; do 
+	juLog  -name=Error -error=ERROR echo $i 
+	juLog  -name=Failure -error=FAILURE   echo $i 
+done < juLogFile
+#}}}
Index: /issm/trunk-jpl/jenkins/linux64_larsen
===================================================================
--- /issm/trunk-jpl/jenkins/linux64_larsen	(revision 16616)
+++ /issm/trunk-jpl/jenkins/linux64_larsen	(revision 16616)
@@ -0,0 +1,106 @@
+#
+########### Configuration file for Eric Larour's Jenkins run on Murdo ############
+
+#-------------------------------#
+# 1: ISSM general configuration #
+#-------------------------------#
+
+#Nightly run name
+NAME="ISSM matlab tests on Linux64 (murdo)"
+
+#ISSM Architecture
+ISSM_ARCH="linux-gnu-amd64"
+
+#ISSM CONFIGURATION 
+ISSM_CONFIG='--prefix=$ISSM_DIR\
+	--with-matlab-dir=$MATLAB_DIR \
+	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
+	--with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
+	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
+	--with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich" \
+	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
+	--with-petsc-arch=$ISSM_ARCH \
+	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
+	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
+	--with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
+	--with-numthreads=18 \
+	--with-cxxoptflags="-mtune=barcelona -ffast-math -O3 -msse4.2 -Wno-write-strings "\
+	--with-graphics-lib="/usr/lib/x86_64-linux-gnu/libX11.so" \
+	--with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
+	--enable-debugging '
+
+#MATLAB path
+MATLAB_PATH="/usr/local/matlab80/"
+
+#PYTHON and MATLAB testing
+MATLAB_TEST=1
+PYTHON_TEST=0
+
+#execution path used for parallel runs
+EXECUTION_PATH=$ISSM_DIR/execution
+
+#-----------------------------------#
+# 3: External packages installation #
+#-----------------------------------#
+
+#ISSM_EXTERNALPACKAGES can have 3 values:
+# - "install" install all external packages listed below
+# - "copy"    copy existing directories (EXTERNALPACKAGESDIR)
+# - "none"    leave external packages as is
+#             ->skip to section 4
+ISSM_EXTERNALPACKAGES="install"
+EXTERNALPACKAGESDIR=$ISSM_DIR/externalpackages
+
+#List of external pakages to be installed and their installation scripts
+EXTERNALPACKAGES="autotools install.sh                
+						matlab    install.sh                
+						mpich     install-3.0-linux64.sh    
+						cmake     install.sh                
+						petsc     install-3.4-linux64.sh    
+						triangle  install-linux64.sh        
+						boost     install.sh                
+						dakota    install-5.3.1-linux64.sh  
+						tao       install-2.2.sh
+						chaco     install.sh 
+						shell2junit install.sh"
+
+#---------------------#
+# 4: ISSM Compilation #
+#---------------------#
+
+#ISSM_COMPILATION can have 2 values:
+# - "yes" compile ISSM
+# - "no"  do not compile ISSM
+ISSM_COMPILATION="yes"
+
+#----------------------#
+# 5: Mail notification #
+#----------------------#
+
+#Mail delivery. If SKIPMAIL="no", the html nightly run report will be
+#sent to the adresses present in $ISSM_DIR/cron/mailinglist.
+SKIPMAIL="no"
+
+#Sender email address
+EMAIL_ADRESS="eric.larour@jpl.nasa.gov"
+
+#Mailing list
+MAILINGLIST="eric.larour@jpl.nasa.gov"
+
+#------------------------#
+# 6: Nightly run options #
+#------------------------#
+
+#number of cpus used in ISSM installation and compilation (one is usually
+#safer as some packages are very sensitive to parallel compilation)
+NUMCPUS_INSTALL=8
+
+#number of cpus used in the nightly runs.
+NUMCPUS_RUN=8
+
+#Nightly run options. The matlab routine runme.m will be called
+#as follows: runme($MATLAB_NROPTIONS). The options must be understandable
+#by Matlab and runme.m
+#ex: "'id',[101 102 103]"
+MATLAB_NROPTIONS=""
+PYTHON_NROPTIONS=""
Index: /issm/trunk-jpl/jenkins/linux64_murdo
===================================================================
--- /issm/trunk-jpl/jenkins/linux64_murdo	(revision 16616)
+++ /issm/trunk-jpl/jenkins/linux64_murdo	(revision 16616)
@@ -0,0 +1,106 @@
+#
+########### Configuration file for Eric Larour's Jenkins run on Murdo ############
+
+#-------------------------------#
+# 1: ISSM general configuration #
+#-------------------------------#
+
+#Nightly run name
+NAME="ISSM matlab tests on Linux64 (murdo)"
+
+#ISSM Architecture
+ISSM_ARCH="linux-gnu-amd64"
+
+#ISSM CONFIGURATION 
+ISSM_CONFIG='--prefix=$ISSM_DIR\
+	--with-matlab-dir=$MATLAB_DIR \
+	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
+	--with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
+	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
+	--with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich" \
+	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
+	--with-petsc-arch=$ISSM_ARCH \
+	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
+	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
+	--with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
+	--with-numthreads=18 \
+	--with-cxxoptflags="-mtune=barcelona -ffast-math -O3 -msse4.2 -Wno-write-strings "\
+	--with-graphics-lib="/usr/lib/x86_64-linux-gnu/libX11.so" \
+	--with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
+	--enable-debugging '
+
+#MATLAB path
+MATLAB_PATH="/usr/local/matlab80/"
+
+#PYTHON and MATLAB testing
+MATLAB_TEST=1
+PYTHON_TEST=0
+
+#execution path used for parallel runs
+EXECUTION_PATH=$ISSM_DIR/execution
+
+#-----------------------------------#
+# 3: External packages installation #
+#-----------------------------------#
+
+#ISSM_EXTERNALPACKAGES can have 3 values:
+# - "install" install all external packages listed below
+# - "copy"    copy existing directories (EXTERNALPACKAGESDIR)
+# - "none"    leave external packages as is
+#             ->skip to section 4
+ISSM_EXTERNALPACKAGES="install"
+EXTERNALPACKAGESDIR=$ISSM_DIR/externalpackages
+
+#List of external pakages to be installed and their installation scripts
+EXTERNALPACKAGES="autotools install.sh                
+						matlab    install.sh                
+						mpich     install-3.0-linux64.sh    
+						cmake     install.sh                
+						petsc     install-3.4-linux64.sh    
+						triangle  install-linux64.sh        
+						boost     install.sh                
+						dakota    install-5.3.1-linux64.sh  
+						tao       install-2.2.sh
+						chaco     install.sh 
+						shell2junit install.sh"
+
+#---------------------#
+# 4: ISSM Compilation #
+#---------------------#
+
+#ISSM_COMPILATION can have 2 values:
+# - "yes" compile ISSM
+# - "no"  do not compile ISSM
+ISSM_COMPILATION="yes"
+
+#----------------------#
+# 5: Mail notification #
+#----------------------#
+
+#Mail delivery. If SKIPMAIL="no", the html nightly run report will be
+#sent to the adresses present in $ISSM_DIR/cron/mailinglist.
+SKIPMAIL="no"
+
+#Sender email address
+EMAIL_ADRESS="eric.larour@jpl.nasa.gov"
+
+#Mailing list
+MAILINGLIST="eric.larour@jpl.nasa.gov"
+
+#------------------------#
+# 6: Nightly run options #
+#------------------------#
+
+#number of cpus used in ISSM installation and compilation (one is usually
+#safer as some packages are very sensitive to parallel compilation)
+NUMCPUS_INSTALL=8
+
+#number of cpus used in the nightly runs.
+NUMCPUS_RUN=8
+
+#Nightly run options. The matlab routine runme.m will be called
+#as follows: runme($MATLAB_NROPTIONS). The options must be understandable
+#by Matlab and runme.m
+#ex: "'id',[101 102 103]"
+MATLAB_NROPTIONS=""
+PYTHON_NROPTIONS=""