Index: sm/trunk-jpl/scripts/dailyrun.sh
===================================================================
--- /issm/trunk-jpl/scripts/dailyrun.sh	(revision 15821)
+++ 	(revision )
@@ -1,164 +1,0 @@
-#!/bin/bash
-#This bash script calls the dailyrun.m matlab file to run our daily test decks. 
-#It then processes the results and sends an email to the Ice developpers.
-
-#Hard coded options
-NUMCPUS_RUN=7
-NROPTIONS=""
-
-#some functions
-function timer() #{{{1
-{
-	if [[ $# -eq 0 ]]; then
-		echo $(date '+%s')
-	else
-		local  stime=$1
-		etime=$(date '+%s')
-
-		if [[ -z "$stime" ]]; then stime=$etime; fi
-
-		dt=$((etime - stime))
-		ds=$((dt % 60))
-		dm=$(((dt / 60) % 60))
-		dh=$((dt / 3600))
-		printf '%d:%02d:%02d' $dh $dm $ds
-	fi
-} #}}}
-function todaydate() #{{{1
-{
-	suffix=`date | awk '{printf("%s-%s-%s  %s",$2,$3,$6,$4);}'`			 
-	echo $suffix;			 
-} #}}}
-function host_name() #{{{1
-{
-	#return host name depending on the OS
-	if [ "$1" = "winxp32" ] 
-	then
-		HOST_NAME=`hostname`;
-	else
-		HOST_NAME=`hostname -s`;
-	fi
-	echo $HOST_NAME;
-} #}}}
-
-#Get configuration
-#Initialize variables {{{1
-TODAY=$(todaydate);
-HOST_NAME=$(host_name $OS);
-START_TIME=$(timer);
-ISSM_RELEASE="N/A"
-USER=$(whoami);
-INIT_PATH=$(pwd);
-#}}}
-
-#Prepare run
-#Windows hack for startup.m {{{1
-#windows environments: ISSM_DIR_WIN variable not correctly picked up when using 
-#the cron job. just get startup to take the ISSM_DIR variable as the pwd:
-if [ "$OS" = "winxp32" ]
-then
-	cat startup.m | sed 's/clear status/clear status; ISSM_DIR=pwd;/g' > startup.m.bak
-	mv startup.m.bak startup.m
-fi
-#}}}
-#create softlink to startup {{{1
-cd $ISSM_DIR/test/NightlyRun/
-ln -s $ISSM_DIR/startup.m .
-#}}}
-#Create dailylog directory and info.log {{{1
-#put installation elapsed time in info.log
-INSTALL_TIME=$(timer)
-ELAPSED_INSTALL=$(timer $START_TIME)
-rm -rf $ISSM_DIR/dailylog
-mkdir  $ISSM_DIR/dailylog
-cat << END > $ISSM_DIR/dailylog/info.log
-today:     $(echo $TODAY)
-user:      $(echo $USER)
-host:      $(echo $HOST_NAME)
-OS:        N/A
-release:   N/A
-init_path: $(echo $INIT_PATH)
-elapsed_install: $(echo $ELAPSED_INSTALL)
-END
-#}}}
-#check NUMCPUS_RUN options {{{1
-if [ "$NUMCPUS_RUN" = "" ]
-then
-	echo "NUMCPUS_RUN option not found, defaulting to NUMCPUS_RUN = 1"
-	NUMCPUS_RUN=1
-fi
-#}}}
-
-#Run tests
-#Launch all tests on different cpus {{{1
-for (( i=1;i<=$NUMCPUS_RUN;i++ ))
-do
-	#Launch matlab and the daily run script
-	cat > $ISSM_DIR/dailylog/matlab_run$i.m << EOF
-	warning off %necessary to avoid a info.log of several Go for parallel runs
-	try,
-	cd $ISSM_DIR/test/NightlyRun
-	startup;
-	$(if [ "$NROPTIONS" = ""  ]
-	then
-		echo "runme('output','daily','rank',$i,'numprocs',$NUMCPUS_RUN);"
-	else
-		echo "runme($NROPTIONS,'output','daily','rank',$i,'numprocs',$NUMCPUS_RUN);"
-	fi
-	)
-	catch me,
-		%An error occured, get report and exit
-		directory=strsplit(pwd,'/');
-		message=getReport(me)
-		fid=fopen([ISSM_DIR '/dailylog/matlaberror.log'], 'at');
-		fprintf(fid,'\nMatlab error occured in: %s\n\n',directory{end});
-		fprintf(fid,'%s',message);
-		fclose(fid);
-	end
-	disp('MATLABEXITEDCORRECTLY');
-	exit
-EOF
-
-	#Start run from dailylog directory
-	cd $ISSM_DIR/dailylog/
-
-	#Start test
-	MATLAB_VERSION="7.6" #7.2,7.4,7.6 and 7.8
-	/usr/local/pkgs/matlab-$MATLAB_VERSION/bin/matlab  -nojvm -nosplash  -r matlab_run$i -logfile matlab_log$i.log &
-done
-
-#wait until matlab closes
-wait
-#}}}
-#concatenate all reports {{{1
-cd $ISSM_DIR/dailylog/
-mv matlab_log1.log  matlab_log.log
-for (( i=2;i<=$NUMCPUS_RUN;i++ ))
-do
-	cat matlab_log.log matlab_log$i.log > matlab_log.log.bak
-	mv matlab_log.log.bak matlab_log.log
-done
-#}}}
-#Complete info.log {{{1
-if [ $(cat matlab_log.log | grep "MATLABEXITEDCORRECTLY" | wc -l) -eq $NUMCPUS_RUN ]
-then
-	MATLABCRASH=0
-else
-	MATLABCRASH=1
-fi
-ELAPSED_RUN=$(timer $INSTALL_TIME)
-ELAPSED_TOTAL=$(timer $START_TIME)
-cat << END >>  $ISSM_DIR/dailylog/info.log
-elapsed_run:   $(echo $ELAPSED_RUN)
-elapsed_total: $(echo $ELAPSED_TOTAL)
-matlab_crash:  $(echo $MATLABCRASH)
-END
-#}}}
-
-#Send Report
-#Build html report {{{1
-cd $ISSM_DIR/dailylog/
-sh ../scripts/report.sh
-ln -s $ISSM_DIR/dailylog/report.html $INIT_PATH
-echo "html report located in $ISSM_DIR/dailylog/report.html and $INIT_PATH/report.html"
-#}}}
Index: sm/trunk-jpl/scripts/errlog_process.sh
===================================================================
--- /issm/trunk-jpl/scripts/errlog_process.sh	(revision 15821)
+++ 	(revision )
@@ -1,8 +1,0 @@
-#!/bin/bash
-
-#first get rank we want to keep.
-rank=`cat $1 | awk 'NR==1' | sed 's/==/ /'g | awk '{printf("%s\n",$1);}'`
-
-#now only keep lines with this rank
-cat $1 | grep "==$rank==" > $1.bak
-mv $1.bak $1
Index: sm/trunk-jpl/scripts/issm_webpdf.sh
===================================================================
--- /issm/trunk-jpl/scripts/issm_webpdf.sh	(revision 15821)
+++ 	(revision )
@@ -1,27 +1,0 @@
-#!/bin/bash
-
-# issm_webpdf.sh
-# convert http://issm/ to issm_web.pdf
-
-# Created by gqwang Thu May 12 13:40:08 PDT 2011
-
-PATH=/usr/bin:/bin:/usr/sbin:/sbin
-
-# 1. Download html
-cd /proj/ice/gqwang/
-rm -rf issm.jpl.nasa.gov || exit 1
-wget -r http://issm.jpl.nasa.gov/
-
-# 2. Convert to pdf
-cd issm.jpl.nasa.gov
-a=`find . -name "*.html"`
-for html in $a; do
-   pdf=`echo $html | sed -e '1,1s/\.html/\.pdf/'`
-   echo /usr/bin/wkhtmltopdf $html $pdf
-done
-
-# 3. Merge into one pdf
-
-mkdir pdf
-find . -name "*.pdf" -exec mv {} pdf \;
-gs -dBATCH -dNOPAUSE -q -sDEVICE=pdfwrite -sOutputFile=issm_web.pdf pdf/*.pdf
Index: /issm/trunk-jpl/scripts/tai
===================================================================
--- /issm/trunk-jpl/scripts/tai	(revision 15821)
+++ /issm/trunk-jpl/scripts/tai	(revision 15822)
@@ -1,4 +1,4 @@
 #!/bin/bash
-if [ ! -z $EXECUTION_DIR ];
+if [ -z $EXECUTION_DIR ];
 then
 	EXECUTION_DIR=$ISSM_DIR/execution
Index: /issm/trunk-jpl/scripts/vie
===================================================================
--- /issm/trunk-jpl/scripts/vie	(revision 15821)
+++ /issm/trunk-jpl/scripts/vie	(revision 15822)
@@ -1,5 +1,5 @@
 #!/bin/bash
 
-if [ ! -z $EXECUTION_DIR ];
+if [ -z "$EXECUTION_DIR" ];
 then
 	EXECUTION_DIR=$ISSM_DIR/execution
Index: /issm/trunk-jpl/scripts/vil
===================================================================
--- /issm/trunk-jpl/scripts/vil	(revision 15821)
+++ /issm/trunk-jpl/scripts/vil	(revision 15822)
@@ -1,4 +1,4 @@
 #!/bin/bash
-if [ ! -z $EXECUTION_DIR ];
+if [ -z $EXECUTION_DIR ];
 then
 	EXECUTION_DIR=$ISSM_DIR/execution