Index: /issm/trunk/cron/nightlyrun.sh
===================================================================
--- /issm/trunk/cron/nightlyrun.sh	(revision 1556)
+++ /issm/trunk/cron/nightlyrun.sh	(revision 1557)
@@ -38,5 +38,5 @@
 
 #source environment variables with new matlab path
-source environment.sh MATLAB_DIR=$MATLAB_PATH
+source environment.sh MATLAB_DIR=$MATLAB_PATH ISSM_DIR_CYGWIN=$ISSM_DIR_CYGWIN
 
 #create simpler  cluster.rc file, with only the cluster we are interested in.