Index: sm/trunk-jpl/configs/config-altix64-castor.sh
===================================================================
--- /issm/trunk-jpl/configs/config-altix64-castor.sh	(revision 15348)
+++ 	(revision )
@@ -1,3 +1,0 @@
-#!/bin/csh
-
-./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/usr/include  --with-mpi-libflags="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so
Index: sm/trunk-jpl/configs/config-cosmos.sh
===================================================================
--- /issm/trunk-jpl/configs/config-cosmos.sh	(revision 15348)
+++ 	(revision )
@@ -1,3 +1,0 @@
-#!/bin/csh
-
-./configure --prefix=$ISSM_DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include  --with-mpi-libflags="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm  -lpthread  -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/  --with-plapack-dir="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH  --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so
Index: sm/trunk-jpl/configs/config-macosx-snowleopard-bothapis.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx-snowleopard-bothapis.sh	(revision 15348)
+++ 	(revision )
@@ -1,27 +1,0 @@
-#!/bin/sh
-
-#petsc 3.2
-#mpich 1.4
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
-	--with-matlab-dir=$MATLAB_DIR \
-	--with-python-dir=$ISSM_DIR/externalpackages/python/install\
-	--with-python-numpy-dir=$ISSM_DIR/externalpackages/python/install/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy\
-	--with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
-	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
-	--with-mpi-libflags=" $ISSM_DIR/externalpackages/mpich/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpl.a " \
-	--with-fortran-lib="/usr/local/gfortran/lib/gcc/x86_64-apple-darwin10/4.6.2/libgfortran.a" \
-	--with-math-lib="/usr/lib/libm.dylib" \
-	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
-	--with-cxxoptflags=" -fno-common -no-cpp-precomp -fexceptions -arch i386 -DMX_COMPAT_32 -O3 -DNDEBUG -w "\
-	--with-numthreads=8 \
-	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  \
-	--with-petsc-arch=$ISSM_ARCH \
-	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
-	--with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/include/ " \
-	--with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ 
Index: sm/trunk-jpl/configs/config-macosx-snowleopard-python.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx-snowleopard-python.sh	(revision 15348)
+++ 	(revision )
@@ -1,26 +1,0 @@
-#!/bin/sh
-
-#petsc 3.2
-#mpich 1.4
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
-	--with-python-dir=$ISSM_DIR/externalpackages/python/install\
-	--with-python-numpy-dir=$ISSM_DIR/externalpackages/python/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy\
-	--with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
-	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
-	--with-mpi-libflags=" $ISSM_DIR/externalpackages/mpich/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpl.a " \
-	--with-fortran-lib="/usr/local/gfortran/lib/gcc/x86_64-apple-darwin10/4.6.2/libgfortran.a" \
-	--with-math-lib="/usr/lib/libm.dylib" \
-	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
-	--with-cxxoptflags=" -fno-common -fexceptions -O3 -DNDEBUG -w "\
-	--with-numthreads=8 \
-	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  \
-	--with-petsc-arch=$ISSM_ARCH \
-	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
-	--with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/include/ " \
-	--with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
Index: sm/trunk-jpl/configs/config-macosx32-ogive.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx32-ogive.sh	(revision 15348)
+++ 	(revision )
@@ -1,26 +1,0 @@
-#!/bin/sh
-
-#petsc 3.1 or 3.2
-#mpich 1.4
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--with-matlab-dir=$MATLAB_DIR \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
-	--with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
-	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  \
-	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
-	--with-mpi-libflags=" $ISSM_DIR/externalpackages/mpich/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpl.a " \
-	--with-petsc-arch=$ISSM_ARCH \
-	--with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
-	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
-	--with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/include/ " \
-	--with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-fortran-lib="/usr/local/gfortran/lib/libgfortran.a" \
-	--with-math-lib="/usr/lib/libm.dylib" \
-	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
-	--with-cxxoptflags=" -fno-common -no-cpp-precomp -fexceptions -arch i386 -g -O3 -DNDEBUG -DMX_COMPAT_32" \
-	--with-numthreads=8
Index: sm/trunk-jpl/configs/config-macosx64-gsl.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx64-gsl.sh	(revision 15348)
+++ 	(revision )
@@ -1,8 +1,0 @@
-#!/bin/sh
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--without-wrappers\
-	--with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install
-	#--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install 
-    #--without-fortran-lib
Index: sm/trunk-jpl/configs/config-macosx64-simple.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx64-simple.sh	(revision 15348)
+++ 	(revision )
@@ -1,23 +1,0 @@
-#!/bin/sh
-
-#petsc 3.2
-#mpich 1.4
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--with-matlab-dir=$MATLAB_DIR \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
-	--with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
-	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
-	--with-mpi-libflags=" $ISSM_DIR/externalpackages/mpich/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpl.a " \
-	--with-fortran-lib="/usr/local/gfortran/lib/libgfortran.a" \
-	--with-math-lib="/usr/lib/libm.dylib" \
-	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
-	--with-cxxoptflags=" -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w "\
-	--with-numthreads=2 \
-	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  \
-	--with-petsc-arch=$ISSM_ARCH \
-	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ 
Index: sm/trunk-jpl/configs/config-macosx64-sophie.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx64-sophie.sh	(revision 15348)
+++ 	(revision )
@@ -1,30 +1,0 @@
-#!/bin/sh
-
-#petsc 3.2
-#mpich 1.4
-export FCFLAGS=" -m64"
-export FFLAGS=" -m64"
-export CFLAGS=" -arch x86_64"
-export CXXFLAGS=" -arch x86_64"
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--with-matlab-dir=$MATLAB_DIR \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
-	--with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
-	--with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install  \
-	--with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
-	--with-mpi-libflags=" $ISSM_DIR/externalpackages/mpich/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpl.a " \
-	--with-petsc-arch=$ISSM_ARCH \
-	--with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
-	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
-	--with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
-	--with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/include/ " \
-	--with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
-	--with-fortran-lib="/sw/usr/local/lib/x86_64/libgfortran.a" \
-	--with-math-lib="/usr/lib/libm.dylib" \
-	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
-	--with-cxxoptflags=" -fno-common -Wno-write-strings -no-cpp-precomp -fexceptions -arch x86_64 -O3 -DNDEBUG -w "\
-	--with-numthreads=8
Index: sm/trunk-jpl/configs/config-pleiades-petsc2.sh
===================================================================
--- /issm/trunk-jpl/configs/config-pleiades-petsc2.sh	(revision 15348)
+++ 	(revision )
@@ -1,21 +1,0 @@
-#!/bin/csh
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-wrappers=no \
- --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-mpi-include=/nasa/sgi/mpt/1.25/include \
- --with-mpi-libflags="-L/nasa/sgi/mpt/1.25/lib/ -lmpi -lpthread -lgfortran" \
- --with-petsc-arch=$ISSM_ARCH \
- --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
- --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ \
- --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
- --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-graphics-lib=/usr/lib64/libX11.so \
- --with-cxxoptflags="-O3 -xS" \
- --with-vendor=intel-pleiades
Index: sm/trunk-jpl/configs/config-pleiades-petsc3.2.sh
===================================================================
--- /issm/trunk-jpl/configs/config-pleiades-petsc3.2.sh	(revision 15348)
+++ 	(revision )
@@ -1,24 +1,0 @@
-#!/bin/csh
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-wrappers=no \
- --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-petsc-arch=$ISSM_ARCH \
- --with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
- --with-mpi-include=/nasa/sgi/mpt/1.25/include \
- --with-mpi-libflags="-L/nasa/sgi/mpt/1.25/lib/ -lmpi -lpthread -lgfortran -lirc" \
- --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
- --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ \
- --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
- --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-graphics-lib=/usr/lib64/libX11.so \
- --with-cxxoptflags="-O3 -xS" \
- --with-vendor=intel-pleiades
-
- #--with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install \
Index: sm/trunk-jpl/configs/config-pleiades-petsc3.3.sh
===================================================================
--- /issm/trunk-jpl/configs/config-pleiades-petsc3.3.sh	(revision 15348)
+++ 	(revision )
@@ -1,21 +1,0 @@
-#!/bin/csh
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-wrappers=no \
- --with-triangle-dir="$ISSM_DIR/externalpackages/triangle/install" \
- --with-petsc-dir="$ISSM_DIR/externalpackages/petsc/install" \
- --with-tao-dir="$ISSM_DIR/externalpackages/tao/install" \
- --with-mpi-include="/nasa/sgi/mpt/2.06rp16/include" \
- --with-mpi-libflags="-L/nasa/sgi/mpt/2.06rp16/ -lmpi" \
- --with-mkl-dir="/nasa/intel/Compiler/2013.1.117/composer_xe_2013.1.117/mkl/lib/intel64" \
- --with-petsc-arch=$ISSM_ARCH \
- --with-dakota-dir="$ISSM_DIR/externalpackages/dakota/install" \
- --with-metis-dir="$ISSM_DIR/externalpackages/petsc/install" \
- --with-mumps-dir="$ISSM_DIR/externalpackages/petsc/install" \
- --with-scalapack-dir="$ISSM_DIR/externalpackages/petsc/install" \
- --with-blacs-dir="$ISSM_DIR/externalpackages/petsc/install" \
- --with-hypre-dir="$ISSM_DIR/externalpackages/petsc/install" \
- --with-graphics-lib="/usr/lib64/libX11.so" \
- --with-cxxoptflags="-O3" \
- --with-vendor="intel-pleiades"