Index: sm/trunk-jpl/configs/config-linux64-astrid-ad.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid-ad.sh	(revision 15340)
+++ 	(revision )
@@ -1,15 +1,0 @@
-#!/bin/sh
-
-./configure \
-	--prefix=$ISSM_DIR \
-	--without-kriging  \
-	--without-kml  \
-	--with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install \
-	--with-adolc-dir=$ADOLC_DIR \
-	--with-adolc-version=3 \
-	--with-matlab-dir=$MATLAB_DIR \
-	--with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
-	--with-cxxoptflags="-O0 -g" \
-	CXXFLAGS="-O0 -g" \
-	CFLAGS="-O0 -g" 
-
Index: sm/trunk-jpl/configs/config-linux64-astrid-gia.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid-gia.sh	(revision 15340)
+++ 	(revision )
@@ -1,36 +1,0 @@
-#!/bin/sh
-
-#External packages versions:
-#petsc 3.1 or 3.2
-#mpich 1.4
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-matlab-dir=$ISSM_DIR/externalpackages/matlab/install \
- --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-python-dir=$ISSM_DIR/externalpackages/python/install\
- --with-python-numpy-dir=$ISSM_DIR/externalpackages/python/install/lib/python2.7/site-packages/numpy/core/include/numpy\
- --with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
- --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
- --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
- --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich -lmpl " \
- --with-petsc-arch=$ISSM_ARCH \
- --with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install \
- --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
- --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
- --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scotch-dir="$ISSM_DIR/externalpackages/scotch/install" \
- --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
- --with-shapelib-dir="$ISSM_DIR/externalpackages/shapelib/install" \
- --with-math77-dir="$ISSM_DIR/externalpackages/math77/install" \
- --with-gia="yes"\
- --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" \
- --with-graphics-lib=/usr/lib64/libX11.so \
- --with-cxxoptflags="-march=opteron -O2" \
- --with-numthreads=16 \
- --enable-debugging
Index: sm/trunk-jpl/configs/config-linux64-astrid-mpich1.0.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid-mpich1.0.sh	(revision 15340)
+++ 	(revision )
@@ -1,31 +1,0 @@
-#!/bin/sh
-
-#External packages versions:
-#petsc 3.1 or 3.2
-#mpich 1.0.2
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-matlab-dir=$MATLAB_DIR \
- --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
- --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
- --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich " \
- --with-petsc-arch=$ISSM_ARCH \
- --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
- --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
- --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
- --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scotch-dir="$ISSM_DIR/externalpackages/scotch/install" \
- --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
- --with-shapelib-dir="$ISSM_DIR/externalpackages/shapelib/install" \
- --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" \
- --with-graphics-lib=/usr/lib64/libX11.so \
- --with-cxxoptflags="-march=opteron -O2" \
- --with-numthreads=32 \
- --enable-debugging
Index: sm/trunk-jpl/configs/config-linux64-astrid-petsc2.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid-petsc2.sh	(revision 15340)
+++ 	(revision )
@@ -1,7 +1,0 @@
-#!/bin/sh
-
-#External packages versions:
-#petsc 2.6
-#mpich 1.0.2
-
-./configure --prefix=$ISSM_DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-march=opteron -O2" --with-numthreads=32 --with-scotch-dir=$ISSM_DIR/externalpackages/scotch/install --with-chaco-dir=$ISSM_DIR/externalpackages/chaco/install --enable-debugging --with-shapelib-dir=$ISSM_DIR/externalpackages/shapelib/install\
Index: sm/trunk-jpl/configs/config-linux64-astrid-petsc3.3.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid-petsc3.3.sh	(revision 15340)
+++ 	(revision )
@@ -1,33 +1,0 @@
-#!/bin/sh
-
-#External packages versions:
-#petsc 3.3
-#mpich 1.4
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-matlab-dir=$MATLAB_DIR \
- --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/petsc/src/externalpackages/metis-5.0.2-p3 \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
- --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
- --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich -lmpl " \
- --with-petsc-arch=$ISSM_ARCH \
- --with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install \
- --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
- --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
- --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
- --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scotch-dir="$ISSM_DIR/externalpackages/scotch/install" \
- --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
- --with-shapelib-dir="$ISSM_DIR/externalpackages/shapelib/install" \
- --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" \
- --with-graphics-lib=/usr/lib64/libX11.so \
- --with-cxxoptflags="-march=opteron -O2" \
- --with-numthreads=16 \
- --enable-debugging
- #--with-serial=no \
Index: sm/trunk-jpl/configs/config-linux64-astrid-petscdev.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid-petscdev.sh	(revision 15340)
+++ 	(revision )
@@ -1,29 +1,0 @@
-#!/bin/sh
-
-#mpich 1.4
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-matlab-dir=$MATLAB_DIR \
- --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/petsc/src/externalpackages/metis-5.0.2-p3 \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
- --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include \
- --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich -lmpl " \
- --with-petsc-arch=$ISSM_ARCH \
- --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
- --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-spai-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-hypre-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-superlu-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
- --with-shapelib-dir="$ISSM_DIR/externalpackages/shapelib/install" \
- --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" \
- --with-graphics-lib=/usr/lib64/libX11.so \
- --with-cxxoptflags="-march=opteron -O3" \
- --with-numthreads=32 \
- --enable-debugging
Index: sm/trunk-jpl/configs/config-linux64-astrid.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid.sh	(revision 15340)
+++ 	(revision )
@@ -1,35 +1,0 @@
-#!/bin/sh
-
-#External packages versions:
-#petsc 3.1 or 3.2
-#mpich 1.4
-
-./configure \
- --prefix=$ISSM_DIR \
- --with-matlab-dir=$ISSM_DIR/externalpackages/matlab/install \
- --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-python-dir=$ISSM_DIR/externalpackages/python/install\
- --with-python-numpy-dir=$ISSM_DIR/externalpackages/python/install/lib/python2.7/site-packages/numpy/core/include/numpy\
- --with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
- --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install \
- --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
- --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich -lmpl " \
- --with-petsc-arch=$ISSM_ARCH \
- --with-gsl-dir=$ISSM_DIR/externalpackages/gsl/install \
- --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/ -lPLAPACK" \
- --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
- --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
- --with-scotch-dir="$ISSM_DIR/externalpackages/scotch/install" \
- --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
- --with-shapelib-dir="$ISSM_DIR/externalpackages/shapelib/install" \
- --with-math77-dir="$ISSM_DIR/externalpackages/math77/install" \
- --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" \
- --with-graphics-lib=/usr/lib64/libX11.so \
- --with-cxxoptflags="-march=opteron -O2" \
- --with-numthreads=16 \
- --enable-debugging