Index: /issm/trunk-jpl/externalpackages/autotools/install-win.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/autotools/install-win.sh	(revision 15296)
+++ /issm/trunk-jpl/externalpackages/autotools/install-win.sh	(revision 15296)
@@ -0,0 +1,46 @@
+#!/bin/bash
+set -eu
+
+rm -rf install
+mkdir install
+
+export PATH="$ISSM_DIR/externalpackages/autotools/install/bin:$PATH"
+
+#install autoconf
+echo " === INSTALLING AUTOCONF =="
+rm -rf src
+$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/autoconf-2.68.tar.gz' 'autoconf-2.68.tar.gz'
+tar -zxvf autoconf-2.68.tar.gz
+mv autoconf-2.68 src
+cd src 
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install" 
+make  
+make install
+cd ..
+
+#install automake
+echo " === INSTALLING AUTOMAKE =="
+rm -rf src
+$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/automake-1.11.3.tar.gz' 'automake-1.11.3.tar.gz'
+tar -zxvf  automake-1.11.3.tar.gz
+mv automake-1.11.3 src
+cd src 
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install" 
+make  
+make install
+cd ..
+
+#install libtool
+echo " === INSTALLING LIBTOOL =="
+rm -rf src
+$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/libtool-2.4.2.tar.gz' 'libtool-2.4.2.tar.gz'
+tar -zxvf  libtool-2.4.2.tar.gz
+rm libtool-2.4.2.tar.gz
+mv libtool-2.4.2 src
+cd src 
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install" 
+make  
+make install
+cd ..
+
+patch ./install/share/aclocal/libtool.m4 < ./patches/libtool.m4.patch
Index: /issm/trunk-jpl/externalpackages/autotools/patches/libtool.m4.patch
===================================================================
--- /issm/trunk-jpl/externalpackages/autotools/patches/libtool.m4.patch	(revision 15296)
+++ /issm/trunk-jpl/externalpackages/autotools/patches/libtool.m4.patch	(revision 15296)
@@ -0,0 +1,38 @@
+--- m4/libtool.m4	2013-06-19 22:19:27.313488900 -0700
++++ m4/libtool.m4.bak	2013-06-18 18:45:55.766285300 -0700
+@@ -4752,7 +4752,7 @@
+       _LT_TAGVAR(exclude_expsyms, $1)=['[_]+GLOBAL_OFFSET_TABLE_|[_]+GLOBAL__[FID]_.*|[_]+head_[A-Za-z0-9_]+_dll|[A-Za-z0-9_]+_dll_iname']
+ 
+       if $LD --help 2>&1 | $GREP 'auto-import' > /dev/null; then
+-        _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
++        _LT_TAGVAR(archive_cmds, $1)='$CC /LD $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib '
+ 	# If the export-symbols file already is a .def file (1st line
+ 	# is EXPORTS), use it as is; otherwise, prepend...
+ 	_LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
+@@ -4761,7 +4761,7 @@
+ 	  echo EXPORTS > $output_objdir/$soname.def;
+ 	  cat $export_symbols >> $output_objdir/$soname.def;
+ 	fi~
+-	$CC -shared $output_objdir/$soname.def $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
++	$CC /LD $output_objdir/$soname.def $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib '
+       else
+ 	_LT_TAGVAR(ld_shlibs, $1)=no
+       fi
+@@ -6168,7 +6168,7 @@
+ 	  _LT_TAGVAR(enable_shared_with_static_runtimes, $1)=yes
+ 
+ 	  if $LD --help 2>&1 | $GREP 'auto-import' > /dev/null; then
+-	    _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
++	    _LT_TAGVAR(archive_cmds, $1)='$CC /LD -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib '
+ 	    # If the export-symbols file already is a .def file (1st line
+ 	    # is EXPORTS), use it as is; otherwise, prepend...
+ 	    _LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
+@@ -6177,7 +6177,7 @@
+ 	      echo EXPORTS > $output_objdir/$soname.def;
+ 	      cat $export_symbols >> $output_objdir/$soname.def;
+ 	    fi~
+-	    $CC -shared -nostdlib $output_objdir/$soname.def $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
++	    $CC /LD -nostdlib $output_objdir/$soname.def $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib '
+ 	  else
+ 	    _LT_TAGVAR(ld_shlibs, $1)=no
+ 	  fi