Index: /issm/trunk-jpl/configs/config-win7-32.sh
===================================================================
--- /issm/trunk-jpl/configs/config-win7-32.sh	(revision 15287)
+++ /issm/trunk-jpl/configs/config-win7-32.sh	(revision 15288)
@@ -6,4 +6,5 @@
 	--with-vendor=intel-win7-32  \
 	--with-matlab-dir="$MATLAB_DIR" \
+   --with-blas-lapack-dir="$ISSM_DIR/externalpackages/petsc/install" \
 	--with-triangle-dir="$ISSM_DIR/externalpackages/triangle/install" \
 	--with-metis-dir="$ISSM_DIR/externalpackages/metis/install" \
@@ -11,4 +12,4 @@
 	--with-petsc-arch=$ISSM_ARCH  \
 	--with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/lib/  \
-	--with-mpi-lib="$ISSM_DIR/externalpackages/petsc/install/lib/libpetsc.lib" \
+	--with-mpi-lib="-Wl,libpetsc.lib" \
 	--with-mpi-include="$ISSM_DIR/externalpackages/petsc/install/include/mpiuni" 
Index: /issm/trunk-jpl/m4/issm_options.m4
===================================================================
--- /issm/trunk-jpl/m4/issm_options.m4	(revision 15287)
+++ /issm/trunk-jpl/m4/issm_options.m4	(revision 15288)
@@ -124,9 +124,9 @@
   			*cygwin*) 
   				if  test $VENDOR = intel-win7-32; then
-  					MEXLIB="-Wl,libmx.lib -Wl,libmex.lib -Wl,libmat.lib -Wl,kernel32.lib -Wl,user32.lib -Wl,gdi32.lib -Wl,winspool.lib -Wl,comdlg32.lib -Wl,advapi32.lib -Wl,shell32.lib -Wl,ole32.lib -Wl,oleaut32.lib -Wl,uuid.lib -Wl,odbc32.lib -Wl,odbccp32.lib -Wl,libf2cblas.lib -Wl,libf2clapack.lib" 
-               MEXLINK="-no-undefined /link /DLL -export:mexFunction" 
+  					MEXLIB="-Wl,./../../c/libISSMCore.a -Wl,libISSMApi.a -Wl,libISSMMatlab.a -Wl,./../../c/libISSMModules.a -Wl,libmx.lib -Wl,libmex.lib -Wl,libmat.lib ${OSLIBS} -Wl,libf2cblas.lib -Wl,libf2clapack.lib" 
+               MEXLINK="-no-undefined -Wl,/export:mexFunction" 
   				elif  test $VENDOR = intel-win7-64; then
-  					MEXLIB="/DLL -export:mexFunction -L$MATLAB_ROOT\extern\lib\win64\microsoft\ -Wl,libmx.lib -Wl,libmex.lib -Wl,libmat.lib -Wl,kernel32.lib -Wl,user32.lib -Wl,gdi32.lib -Wl,winspool.lib -Wl,comdlg32.lib -Wl,advapi32.lib -Wl,shell32.lib -Wl,ole32.lib -Wl,oleaut32.lib -Wl,uuid.lib -Wl,odbc32.lib -Wl,odbccp32.lib  -NOLOGO -INCREMENTAL:NO -manifest" 
-               MEXLINK="-no-undefined /link /DLL -export:mexFunction" 
+  					MEXLIB="-Wl,./../../c/libISSMCore.a -Wl,libISSMApi.a -Wl,libISSMMatlab.a -Wl,./../../c/libISSMModules.a -Wl,libmx.lib -Wl,libmex.lib -Wl,libmat.lib ${OSLIBS} -Wl,libf2cblas.lib -Wl,libf2clapack.lib" 
+               MEXLINK="-no-undefined -Wl,/export:mexFunction" 
   				fi
   				MEXEXT=`$MATLAB_ROOT/bin/mexext.bat`
@@ -163,5 +163,5 @@
 		case "${host_os}" in
 				*cygwin*)
-				TRIANGLELIB=$TRIANGLE_ROOT/triangle.lib
+				TRIANGLELIB="-Wl,`cygpath -m $TRIANGLE_ROOT/`triangle.lib"
 				;;
 				*linux*)
@@ -616,8 +616,8 @@
 			*cygwin*)
 			if test $PETSC_MAJOR -lt 3 ; then
-				PETSCLIB=-Wl,/LIBPATH:`cygpath -w $PETSC_ROOT/lib` libpetscksp.lib libpetscdm.lib libpetscmat.lib libpetscvec.lib libpetscsnes.lib libpetscts.lib libmpiuni.lib libpetsc.lib
+				PETSCLIB=-Wl,/LIBPATH:`cygpath -w $PETSC_ROOT/lib`  -Wl,libpetscksp.lib  -Wl,libpetscdm.lib  -Wl,libpetscmat.lib  -Wl,libpetscvec.lib  -Wl,libpetscsnes.lib  -Wl,libpetscts.lib  -Wl,libmpiuni.lib  -Wl,libpetsc.lib
 			else
-				PETSCLIB="-L$PETSC_ROOT/lib libpetsc.lib"
-				if test $PETSC_MAJOR -gt 3 || test $PETSC_MINOR -ge 3; then PETSCLIB+=" libmetis.lib"; fi
+				PETSCLIB="-L$PETSC_ROOT/lib  -Wl,libpetsc.lib"
+				if test $PETSC_MAJOR -gt 3 || test $PETSC_MINOR -ge 3; then PETSCLIB+="  -Wl,libmetis.lib"; fi
 			fi
 			;;
@@ -681,5 +681,5 @@
 				case "${host_os}" in
 					*cygwin*)
-					METISLIB="-L$METIS_ROOT libmetis.lib"
+					METISLIB="-L$METIS_ROOT -Wl,libmetis.lib"
 					;;
 					*linux*)
@@ -822,5 +822,5 @@
 		case "${host_os}" in
 			*cygwin*)
-			BLASLAPACKLIB="-L$BLASLAPACK_ROOT libf2cblas.lib  libf2clapack.lib"
+			BLASLAPACKLIB="-L`cygpath -m $BLASLAPACK_ROOT` -Wl,libf2cblas.lib  -Wl,libf2clapack.lib"
 			;;
 			*linux*)
Index: /issm/trunk-jpl/src/wrappers/matlab/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/wrappers/matlab/Makefile.am	(revision 15287)
+++ /issm/trunk-jpl/src/wrappers/matlab/Makefile.am	(revision 15288)
@@ -122,5 +122,5 @@
 deps += ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la ./libISSMMatlab.a
 else
-deps += ${OS_LDFLAG}./libISSMMatlab.a ${OS_LDFLAG}../../c/libISSMModules.a ${OS_LDFLAG}../../c/libISSMCore.a ${OS_LDFLAG}./libISSMApi.a
+deps += ./libISSMMatlab.a ../../c/libISSMModules.a ../../c/libISSMCore.a ./libISSMApi.a
 if ADOLC
 deps += $(ADOLCLIB)
@@ -271,5 +271,5 @@
 Scotch_la_SOURCES = ../Scotch/Scotch.cpp\
 						  ../Scotch/Scotch.h
-Scotch_la_LIBADD = ${deps} $(SCOTCHLIB) $(MPILIB)
+Scotch_la_LIBADD = ${deps} $(SCOTCHLIB) $(MPILIB) $(BLASLAPACKLIB)
 
 Shp2Exp_la_SOURCES = ../Shp2Exp/Shp2Exp.cpp\