Index: /issm/trunk-jpl/m4/issm_options.m4
===================================================================
--- /issm/trunk-jpl/m4/issm_options.m4	(revision 15170)
+++ /issm/trunk-jpl/m4/issm_options.m4	(revision 15171)
@@ -177,10 +177,11 @@
 		DAKOTAINCL=-I$DAKOTA_ROOT/include
 		AC_MSG_CHECKING(for dakota version)
-		DAKOTA_VERSION=`cat $DAKOTA_ROOT/include/dakota_config.h | grep "#define PACKAGE_VERSION" | sed 's/#define PACKAGE_VERSION//' | sed 's/ //g' | sed -e 's/\"//g' `
+		DAKOTA_VERSION=`cat $DAKOTA_ROOT/../src/src/CommandLineHandler.* | grep 'DAKOTA version' | grep 'release' | grep -v // | sed 's/.*DAKOTA version //' | sed 's/ .*//' `
 		AC_MSG_RESULT($DAKOTA_VERSION)
-		AC_DEFINE_UNQUOTED([DAKOTA_VERSION],"$DAKOTA_VERSION",[Dakota version number])
+		AC_DEFINE_UNQUOTED([_DAKOTA_VERSION_],"$DAKOTA_VERSION",[Dakota version number])
+		DAKOTAFLAGS=""
 		case "${host_os}" in
 			*cygwin*)
-				if      test x$DAKOTA_VERSION = x4.2; then
+				if      test x$DAKOTA_VERSION = x4.2 || test x$DAKOTA_VERSION = x4.2+; then
 					DAKOTALIB="-L$DAKOTA_ROOT/lib -ldakota -lteuchos -lpecos -lfftw3 -llhs -levidence -lsurfpack -lconmin -lddace -lfsudace -ljega -lcport -lopt -lpsuade -lnewmat -lncsuopt -lgsl -lquadrature -lcoliny -lcolin -lpebbl -lutilib -l3po -lnappspack -lappspack -lconveyor -lshared -lcdd -lamplsolver"
 				else if test x$DAKOTA_VERSION = x5.1 || test x$DAKOTA_VERSION = x5.2; then
@@ -192,15 +193,19 @@
 			;;
 			*linux*)
-				if      test x$DAKOTA_VERSION = x4.2; then
+				if      test x$DAKOTA_VERSION = x4.2 || test x$DAKOTA_VERSION = x4.2+; then
 					DAKOTALIB="-L$DAKOTA_ROOT/lib -ldakota -lteuchos -lpecos -lfftw3 -llhs -levidence -lsurfpack -lconmin -lddace -lfsudace -ljega -lcport -lopt -lpsuade -lnewmat -lncsuopt -lgsl -lquadrature -lcoliny -lcolin -lpebbl -lutilib -l3po -lnappspack -lappspack -lconveyor -lshared -lcdd -lamplsolver"
 				else if test x$DAKOTA_VERSION = x5.1 || test x$DAKOTA_VERSION = x5.2; then
 					DAKOTALIB="-L$DAKOTA_ROOT/lib -ldakota -lteuchos -lpecos -llhs -lsparsegrid -lsurfpack -lconmin -lddace -lfsudace -ljega -lcport -loptpp -lpsuade -lncsuopt -lcolin -linterfaces -lmomh -lscolib -lpebbl -ltinyxml -lutilib -l3po -lhopspack -lnidr -lamplsolver -lboost_signals -lboost_regex -lboost_filesystem -lboost_system -ldl"
+				else if test x$DAKOTA_VERSION = x5.3; then
+					DAKOTAFLAGS="-DDISABLE_DAKOTA_CONFIG_H -DBOOST_MULTI_INDEX_DISABLE_SERIALIZATION -DDAKOTA_PLUGIN -DBOOST_DISABLE_ASSERTS -DDAKOTA_HAVE_BOOST_FS -DHAVE_UNISTD_H -DHAVE_SYSTEM -DHAVE_WORKING_FORK -DHAVE_WORKING_VFORK -DHAVE_SYS_WAIT_H -DHAVE_USLEEP -DDAKOTA_F90 -DDAKOTA_HAVE_MPI -DHAVE_PECOS -DHAVE_SURFPACK -DDAKOTA_COLINY -DDAKOTA_UTILIB -DHAVE_ADAPTIVE_SAMPLING -DHAVE_CONMIN -DDAKOTA_DDACE -DHAVE_FSUDACE -DDAKOTA_HOPS -DHAVE_JEGA -DHAVE_NCSU -DHAVE_NL2SOL -DHAVE_OPTPP -DDAKOTA_OPTPP -DHAVE_PSUADE -DHAVE_AMPL"
+					DAKOTALIB="-L$DAKOTA_ROOT/lib -ldakota_src -ldakota_src_fortran -lnidr -lteuchos -lpecos -lpecos_src -llhs -lmods -lmod -ldfftpack -lsparsegrid -lsurfpack -lsurfpack_fortran -lutilib -lcolin -linterfaces -lscolib -l3po -lpebbl -ltinyxml -lconmin -ldace -lanalyzer -lrandom -lsampling -lbose -lfsudace -lhopspack -ljega -ljega_fe -lmoga -lsoga -leutils -lutilities -lncsuopt -lcport -loptpp -lpsuade -lamplsolver"
 				else
 					AC_MSG_ERROR([Dakota version not found or version ($DAKOTA_VERSION) not supported!]);
 				fi
 				fi
+				fi
 			;;
 			*darwin*)
-				if      test x$DAKOTA_VERSION = x4.2; then
+				if      test x$DAKOTA_VERSION = x4.2 || test x$DAKOTA_VERSION = x4.2+; then
 					DAKOTALIB="-L$DAKOTA_ROOT/lib -ldakota -lteuchos -lpecos -lfftw3 -llhs -levidence -lsurfpack -lconmin -lddace -lfsudace -ljega -lcport -lopt -lpsuade -lnewmat -lncsuopt -lgsl -lquadrature -lcoliny -lcolin -lpebbl -lutilib -l3po -lnappspack -lappspack -lconveyor -lshared -lcdd -lamplsolver" 
 					dnl DAKOTALIB+= "-lgslcblas -L/usr/lib -lblas -llapack"
@@ -215,5 +220,14 @@
 		esac
 		AC_DEFINE([_HAVE_DAKOTA_],[1],[with Dakota in ISSM src])
+		AC_MSG_CHECKING(for dakota major version)
+		DAKOTA_MAJOR=`cat $DAKOTA_ROOT/../src/src/CommandLineHandler.* | grep 'DAKOTA version' | grep 'release' | grep -v // | sed 's/.*DAKOTA version //' | sed 's/ .*//' | sed 's/\..*//' `
+		AC_MSG_RESULT($DAKOTA_MAJOR)
+		AC_DEFINE_UNQUOTED([_DAKOTA_MAJOR_],$DAKOTA_MAJOR,[Dakota major version number])
+		AC_MSG_CHECKING(for dakota minor version)
+		DAKOTA_MINOR=`cat $DAKOTA_ROOT/../src/src/CommandLineHandler.* | grep 'DAKOTA version' | grep 'release' | grep -v // | sed 's/.*DAKOTA version //' | sed 's/ .*//' | sed 's/.*\.//' | sed 's/+//' `
+		AC_MSG_RESULT($DAKOTA_MINOR)
+		AC_DEFINE_UNQUOTED([_DAKOTA_MINOR_],$DAKOTA_MINOR,[Dakota minor version number])
 		AC_SUBST([DAKOTAINCL])
+		AC_SUBST([DAKOTAFLAGS])
 		AC_SUBST([DAKOTALIB])