Index: /issm/trunk-jpl/externalpackages/dakota/LHSDriver.cpp.4.2.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/LHSDriver.cpp.4.2.patch (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/LHSDriver.cpp.4.2.patch (revision 14272) @@ -0,0 +1,8 @@ +766c766 +< /*char output_string[32], message_string[32], title_string[32], +--- +> char output_string[32], message_string[32], title_string[32], +802c802 +< check_error(err_code, "lhs_files");*/ +--- +> check_error(err_code, "lhs_files"); Index: sm/trunk-jpl/externalpackages/dakota/LHSDriver.cpp.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/LHSDriver.cpp.patch (revision 14271) +++ (revision ) @@ -1,8 +1,0 @@ -766c766 -< /*char output_string[32], message_string[32], title_string[32], ---- -> char output_string[32], message_string[32], title_string[32], -802c802 -< check_error(err_code, "lhs_files");*/ ---- -> check_error(err_code, "lhs_files"); Index: /issm/trunk-jpl/externalpackages/dakota/NIDRProblemDescDB.C.4.2.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/NIDRProblemDescDB.C.4.2.patch (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/NIDRProblemDescDB.C.4.2.patch (revision 14272) @@ -0,0 +1,4 @@ +95a96,98 +> +> //close the input file +> fclose(nidrin); Index: sm/trunk-jpl/externalpackages/dakota/NIDRProblemDescDB.C.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/NIDRProblemDescDB.C.patch (revision 14271) +++ (revision ) @@ -1,4 +1,0 @@ -95a96,98 -> -> //close the input file -> fclose(nidrin); Index: /issm/trunk-jpl/externalpackages/dakota/NonDLocalReliability.C.4.2.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/NonDLocalReliability.C.4.2.patch (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/NonDLocalReliability.C.4.2.patch (revision 14272) @@ -0,0 +1,7 @@ +2276a2277 +> // add sensitivity output to importance factors (jes, 8/06/10) +2280c2281,2282 +< << impFactor[i][j] << '\n'; +--- +> << impFactor[i][j] << " Sensitivity = " << setw(write_precision+7) +> << fnGradsMeanX(i, j) << '\n'; Index: sm/trunk-jpl/externalpackages/dakota/NonDLocalReliability.C.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/NonDLocalReliability.C.patch (revision 14271) +++ (revision ) @@ -1,7 +1,0 @@ -2276a2277 -> // add sensitivity output to importance factors (jes, 8/06/10) -2280c2281,2282 -< << impFactor[i][j] << '\n'; ---- -> << impFactor[i][j] << " Sensitivity = " << setw(write_precision+7) -> << fnGradsMeanX(i, j) << '\n'; Index: /issm/trunk-jpl/externalpackages/dakota/NonDSampling.C.4.2.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/NonDSampling.C.4.2.patch (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/NonDSampling.C.4.2.patch (revision 14272) @@ -0,0 +1,15 @@ +656a657,658 +> +> +659a662,663 +> +> return; //don't compute for now, too expensive. +705c709 +< //calculate simple rank correlation coeff +--- +> //calculate simple correlation coeff +710a715 +> +1071a1077,1078 +> +> return; //don't output for now. Index: sm/trunk-jpl/externalpackages/dakota/NonDSampling.C.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/NonDSampling.C.patch (revision 14271) +++ (revision ) @@ -1,15 +1,0 @@ -656a657,658 -> -> -659a662,663 -> -> return; //don't compute for now, too expensive. -705c709 -< //calculate simple rank correlation coeff ---- -> //calculate simple correlation coeff -710a715 -> -1071a1077,1078 -> -> return; //don't output for now. Index: /issm/trunk-jpl/externalpackages/dakota/NonDUnilevelRBDO.C.4.2.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/NonDUnilevelRBDO.C.4.2.patch (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/NonDUnilevelRBDO.C.4.2.patch (revision 14272) @@ -0,0 +1,10 @@ +1052,1053c1052,1057 +< s << " Importance Factor for variable " << setw(11) +< << uv_labels[j].data() << " = " << impFactor[i][j] << '\n'; +--- +> // add sensitivity output to importance factors (jes, 8/06/10) +> s << " Importance Factor for variable " << setiosflags(ios::left) +> << setw(11) << uv_labels[j].data() << " = " +> << resetiosflags(ios::adjustfield) << setw(write_precision+7) +> << impFactor[i][j] << " Sensitivity = " << setw(write_precision+7) +> << fnGradsMeanX(i, j) << '\n'; Index: sm/trunk-jpl/externalpackages/dakota/NonDUnilevelRBDO.C.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/NonDUnilevelRBDO.C.patch (revision 14271) +++ (revision ) @@ -1,10 +1,0 @@ -1052,1053c1052,1057 -< s << " Importance Factor for variable " << setw(11) -< << uv_labels[j].data() << " = " << impFactor[i][j] << '\n'; ---- -> // add sensitivity output to importance factors (jes, 8/06/10) -> s << " Importance Factor for variable " << setiosflags(ios::left) -> << setw(11) << uv_labels[j].data() << " = " -> << resetiosflags(ios::adjustfield) << setw(write_precision+7) -> << impFactor[i][j] << " Sensitivity = " << setw(write_precision+7) -> << fnGradsMeanX(i, j) << '\n'; Index: /issm/trunk-jpl/externalpackages/dakota/ParallelLibrary.C.4.2.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/ParallelLibrary.C.4.2.patch (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/ParallelLibrary.C.4.2.patch (revision 14272) @@ -0,0 +1,34 @@ +134a135 +> initialized=0; //we run serially all the time! +165a167,197 +> /** This constructor is provided for the Issm software, to run serial +> * Dakota in a parallel MPI ring: */ +> ParallelLibrary::ParallelLibrary(char* serial_mode): worldRank(0), worldSize(1), +> mpirunFlag(false), ownMPIFlag(false), dryRunFlag(false), dummyFlag(false), +> stdOutputFlag(false), stdErrorFlag(false), startClock(0), +> stdOutputFilename(NULL), stdErrorFilename(NULL), readRestartFilename(NULL), +> writeRestartFilename(NULL), stopRestartEvals(0), +> currPLIter(parallelLevels.end()), currPCIter(parallelConfigurations.end()) +> { +> startClock = clock(); +> #ifdef DAKOTA_UTILIB +> utilib::exception_mngr::set_mode(utilib::exception_mngr::Abort); +> startCPUTime = CPUSeconds(); // see utilib/src/sys/seconds.cpp +> startWCTime = WallClockSeconds(); // see utilib/src/sys/seconds.cpp +> #endif // DAKOTA_UTILIB +> +> // do not initialize MPI. Get worldRank/worldSize if available +> ParallelLevel pl; +> #ifdef HAVE_MPI // mpi available, we still don't want to run in parallel for Dakota! +> pl.serverIntraComm = MPI_COMM_NULL; +> Cout << "Running Dakota in serial mode on CPU 0, inside an MPI ring."; +> #else // mpi not available +> pl.serverIntraComm = MPI_COMM_NULL; +> Cout << "Running Dakota in serial mode.\n"; +> #endif // HAVE_MPI +> +> parallelLevels.insert(pl); +> currPLIter = parallelLevels.begin(); +> increment_parallel_configuration(); +> } +> Index: sm/trunk-jpl/externalpackages/dakota/ParallelLibrary.C.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/ParallelLibrary.C.patch (revision 14271) +++ (revision ) @@ -1,34 +1,0 @@ -134a135 -> initialized=0; //we run serially all the time! -165a167,197 -> /** This constructor is provided for the Issm software, to run serial -> * Dakota in a parallel MPI ring: */ -> ParallelLibrary::ParallelLibrary(char* serial_mode): worldRank(0), worldSize(1), -> mpirunFlag(false), ownMPIFlag(false), dryRunFlag(false), dummyFlag(false), -> stdOutputFlag(false), stdErrorFlag(false), startClock(0), -> stdOutputFilename(NULL), stdErrorFilename(NULL), readRestartFilename(NULL), -> writeRestartFilename(NULL), stopRestartEvals(0), -> currPLIter(parallelLevels.end()), currPCIter(parallelConfigurations.end()) -> { -> startClock = clock(); -> #ifdef DAKOTA_UTILIB -> utilib::exception_mngr::set_mode(utilib::exception_mngr::Abort); -> startCPUTime = CPUSeconds(); // see utilib/src/sys/seconds.cpp -> startWCTime = WallClockSeconds(); // see utilib/src/sys/seconds.cpp -> #endif // DAKOTA_UTILIB -> -> // do not initialize MPI. Get worldRank/worldSize if available -> ParallelLevel pl; -> #ifdef HAVE_MPI // mpi available, we still don't want to run in parallel for Dakota! -> pl.serverIntraComm = MPI_COMM_NULL; -> Cout << "Running Dakota in serial mode on CPU 0, inside an MPI ring."; -> #else // mpi not available -> pl.serverIntraComm = MPI_COMM_NULL; -> Cout << "Running Dakota in serial mode.\n"; -> #endif // HAVE_MPI -> -> parallelLevels.insert(pl); -> currPLIter = parallelLevels.begin(); -> increment_parallel_configuration(); -> } -> Index: /issm/trunk-jpl/externalpackages/dakota/ParallelLibrary.H.4.2.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/ParallelLibrary.H.4.2.patch (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/ParallelLibrary.H.4.2.patch (revision 14272) @@ -0,0 +1,3 @@ +346a347,348 +> /// library mode constructor, serial mode +> ParallelLibrary(char* serial_mode); Index: sm/trunk-jpl/externalpackages/dakota/ParallelLibrary.H.patch =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/ParallelLibrary.H.patch (revision 14271) +++ (revision ) @@ -1,3 +1,0 @@ -346a347,348 -> /// library mode constructor, serial mode -> ParallelLibrary(char* serial_mode); Index: /issm/trunk-jpl/externalpackages/dakota/install-4.2-altix64-cosmos.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-4.2-altix64-cosmos.sh (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/install-4.2-altix64-cosmos.sh (revision 14272) @@ -0,0 +1,97 @@ +#!/bin/bash +set -eu + +#Some cleanup +rm -rf Dakota +rm -rf src +rm -rf install +mkdir src install + +#Download from ISSM server +$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' + +#Untar +tar -zxvf Dakota_4_3.src.tar.gz + +#Move Dakota to src directory +mv Dakota/* src +rm -rf Dakota + +#Apply patches +patch src/src/ParallelLibrary.C ./ParallelLibrary.C.4.2.patch +patch src/src/ParallelLibrary.H ./ParallelLibrary.H.4.2.patch +patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.4.2.patch +patch src/src/NonDSampling.C ./NonDSampling.C.4.2.patch +patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.4.2.patch +patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.4.2.patch # source not even used? +#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.4.2.patch + +#Configure dakota +cd src +./configure \ + --prefix="$ISSM_DIR/externalpackages/dakota/install" \ + --without-graphics \ + --with-pic \ + --disable-mpi \ + --with-blas=/opt/intel/mkl/9.1.023/lib/64/libmkl.so \ + --with-lapack=/opt/intel/mkl/9.1.023/lib/64/libmkl_lapack.so +cd .. + +#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages +#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC +#flag to the compilation. +cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/NCSUOpt/Makefile + +cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/pebbl/src/Makefile + +cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-nappspack/Makefile + +cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-cddlib/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-conveyor/Makefile + +cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-appspack/Makefile + +cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/colin/src/Makefile + +cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/coliny/src/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/packages/ampl/Makefile + +#Compile and install dakota +cd src +if [ $# -eq 0 ]; +then + make + make install +else + make -j $1 + make -j $1 install +fi +cd .. + +#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! +cd install/lib +mv libamplsolver.a libamplsolver.a.bak +ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: /issm/trunk-jpl/externalpackages/dakota/install-4.2-discover.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-4.2-discover.sh (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/install-4.2-discover.sh (revision 14272) @@ -0,0 +1,97 @@ +#!/bin/bash +set -eu + +#Some cleanup +rm -rf Dakota +rm -rf src +rm -rf install +mkdir src install + +#Download from ISSM server +$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' + +#Untar +tar -zxvf Dakota_4_3.src.tar.gz + +#Move Dakota to src directory +mv Dakota/* src +rm -rf Dakota + +#Apply patches +patch src/src/ParallelLibrary.C ./ParallelLibrary.C.4.2.patch +patch src/src/ParallelLibrary.H ./ParallelLibrary.H.4.2.patch +patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.4.2.patch +patch src/src/NonDSampling.C ./NonDSampling.C.4.2.patch +patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.4.2.patch +patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.4.2.patch # source not even used? +#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.4.2.patch + +#Configure dakota +cd src +./configure \ +--prefix="$ISSM_DIR/externalpackages/dakota/install/" \ +--without-graphics \ +--with-pic \ +--disable-mpi \ +--with-blas="-L/usr/local/intel/mkl/10.1.2.024/lib/64 -lmkl_lapack -lmkl -lguide -lpthread" \ +--with-lapack="-L/usr/local/intel/mkl/10.1.2.024/lib/64 -lmkl_lapack -lmkl -lguide -lpthread" +cd .. + +#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages +#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC +#flag to the compilation. +cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/NCSUOpt/Makefile + +cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/pebbl/src/Makefile + +cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-nappspack/Makefile + +cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-cddlib/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-conveyor/Makefile + +cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-appspack/Makefile + +cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/colin/src/Makefile + +cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/coliny/src/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/packages/ampl/Makefile + +#Compile and install dakota +cd src +if [ $# -eq 0 ]; +then + make + make install +else + make -j $1 + make -j $1 install +fi +cd .. + +#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! +cd install/lib +mv libamplsolver.a libamplsolver.a.bak +ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: /issm/trunk-jpl/externalpackages/dakota/install-4.2-linux64-astrid.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-4.2-linux64-astrid.sh (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/install-4.2-linux64-astrid.sh (revision 14272) @@ -0,0 +1,97 @@ +#!/bin/bash +set -eu + +#Some cleanup +rm -rf Dakota +rm -rf src +rm -rf install +mkdir src install + +#Download from ISSM server +$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' + +#Untar +tar -zxvf Dakota_4_3.src.tar.gz + +#Move Dakota to src directory +mv Dakota/* src +rm -rf Dakota + +#Apply patches +patch src/src/ParallelLibrary.C ./ParallelLibrary.C.4.2.patch +patch src/src/ParallelLibrary.H ./ParallelLibrary.H.4.2.patch +patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.4.2.patch +patch src/src/NonDSampling.C ./NonDSampling.C.4.2.patch +patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.4.2.patch +patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.4.2.patch # source not even used? +#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.4.2.patch + +#Configure dakota +cd src +./configure \ + --prefix="$ISSM_DIR/externalpackages/dakota/install" \ + --without-graphics \ + --with-pic \ + --disable-mpi \ + --with-blas=/usr/lib64/libblas.so.3.0.3 \ + --with-lapack=/usr/lib64/liblapack.so.3.0.3 +cd .. + +#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages +#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC +#flag to the compilation. +cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/NCSUOpt/Makefile + +cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/pebbl/src/Makefile + +cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-nappspack/Makefile + +cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-cddlib/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-conveyor/Makefile + +cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-appspack/Makefile + +cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/colin/src/Makefile + +cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/coliny/src/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/packages/ampl/Makefile + +#Compile and install dakota +cd src +if [ $# -eq 0 ]; +then + make + make install +else + make -j $1 + make -j $1 install +fi +cd .. + +#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! +cd install/lib +mv libamplsolver.a libamplsolver.a.bak +ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: /issm/trunk-jpl/externalpackages/dakota/install-4.2-linux64-cloud.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-4.2-linux64-cloud.sh (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/install-4.2-linux64-cloud.sh (revision 14272) @@ -0,0 +1,97 @@ +#!/bin/bash +set -eu + +#Some cleanup +rm -rf Dakota +rm -rf src +rm -rf install +mkdir src install + +#Download from ISSM server +$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' + +#Untar +tar -zxvf Dakota_4_3.src.tar.gz + +#Move Dakota to src directory +mv Dakota/* src +rm -rf Dakota + +#Apply patches +patch src/src/ParallelLibrary.C ./ParallelLibrary.C.4.2.patch +patch src/src/ParallelLibrary.H ./ParallelLibrary.H.4.2.patch +patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.4.2.patch +patch src/src/NonDSampling.C ./NonDSampling.C.4.2.patch +patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.4.2.patch +patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.4.2.patch # source not even used? +#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.4.2.patch + +#Configure dakota +cd src +./configure \ + --prefix="$ISSM_DIR/externalpackages/dakota/install" \ + --without-graphics \ + --with-pic \ + --disable-mpi \ + --with-blas=/usr/lib/libblas.so \ + --with-lapack=/usr/lib/liblapack.so +cd .. + +#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages +#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC +#flag to the compilation. +cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/NCSUOpt/Makefile + +cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/pebbl/src/Makefile + +cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-nappspack/Makefile + +cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-cddlib/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-conveyor/Makefile + +cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-appspack/Makefile + +cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/colin/src/Makefile + +cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/coliny/src/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/packages/ampl/Makefile + +#Compile and install dakota +cd src +if [ $# -eq 0 ]; +then + make + make install +else + make -j $1 + make -j $1 install +fi +cd .. + +#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! +cd install/lib +mv libamplsolver.a libamplsolver.a.bak +ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: /issm/trunk-jpl/externalpackages/dakota/install-4.2-linux64-murdo.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-4.2-linux64-murdo.sh (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/install-4.2-linux64-murdo.sh (revision 14272) @@ -0,0 +1,97 @@ +#!/bin/bash +set -eu + +#Some cleanup +rm -rf Dakota +rm -rf src +rm -rf install +mkdir src install + +#Download from ISSM server +$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' + +#Untar +tar -zxvf Dakota_4_3.src.tar.gz + +#Move Dakota to src directory +mv Dakota/* src +rm -rf Dakota + +#Apply patches +patch src/src/ParallelLibrary.C ./ParallelLibrary.C.4.2.patch +patch src/src/ParallelLibrary.H ./ParallelLibrary.H.4.2.patch +patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.4.2.patch +patch src/src/NonDSampling.C ./NonDSampling.C.4.2.patch +patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.4.2.patch +patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.4.2.patch # source not even used? +#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.4.2.patch + +#Configure dakota +cd src +./configure \ + --prefix="$ISSM_DIR/externalpackages/dakota/install" \ + --without-graphics \ + --with-pic \ + --disable-mpi \ + --with-blas=/usr/lib64/libblas.so.3.1.1 \ + --with-lapack=/usr/lib64/liblapack.so.3.1.1 +cd .. + +#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages +#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC +#flag to the compilation. +cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/NCSUOpt/Makefile + +cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/pebbl/src/Makefile + +cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-nappspack/Makefile + +cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-cddlib/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-conveyor/Makefile + +cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-appspack/Makefile + +cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/colin/src/Makefile + +cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/coliny/src/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/packages/ampl/Makefile + +#Compile and install dakota +cd src +if [ $# -eq 0 ]; +then + make + make install +else + make -j $1 + make -j $1 install +fi +cd .. + +#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! +cd install/lib +mv libamplsolver.a libamplsolver.a.bak +ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: /issm/trunk-jpl/externalpackages/dakota/install-4.2-macosx64.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-4.2-macosx64.sh (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/install-4.2-macosx64.sh (revision 14272) @@ -0,0 +1,97 @@ +#!/bin/bash +set -eu + +#Some cleanup +rm -rf Dakota +rm -rf src +rm -rf install +mkdir src install + +#Download from ISSM server +$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' + +#Untar +tar -zxvf Dakota_4_3.src.tar.gz + +#Move Dakota to src directory +mv Dakota/* src +rm -rf Dakota + +#Apply patches +patch src/src/ParallelLibrary.C ./ParallelLibrary.C.4.2.patch +patch src/src/ParallelLibrary.H ./ParallelLibrary.H.4.2.patch +patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.4.2.patch +patch src/src/NonDSampling.C ./NonDSampling.C.4.2.patch +patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.4.2.patch +patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.4.2.patch # source not even used? +#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.4.2.patch + +#Configure dakota +cd src +./configure \ + --prefix="$ISSM_DIR/externalpackages/dakota/install" \ + --without-graphics \ + --with-pic \ + --disable-mpi \ + --with-blas="-L$ISSM_DIR/externalpackages/petsc/install/lib -lfblas " \ + --with-lapack="-L$ISSM_DIR/externalpackages/petsc/install/lib -lflapack " +cd .. + +#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages +#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC +#flag to the compilation. +cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/NCSUOpt/Makefile + +cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/pebbl/src/Makefile + +cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-nappspack/Makefile + +cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-cddlib/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-conveyor/Makefile + +cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-appspack/Makefile + +cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/colin/src/Makefile + +cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/coliny/src/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2 -D_NONSTD_SOURCE/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/packages/ampl/Makefile + +#Compile and install dakota +cd src +if [ $# -eq 0 ]; +then + make + make install +else + make -j $1 + make -j $1 install +fi +cd .. + +#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! +cd install/lib +mv libamplsolver.a libamplsolver.a.bak +ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: /issm/trunk-jpl/externalpackages/dakota/install-4.2-pleiades-petsc3.3.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-4.2-pleiades-petsc3.3.sh (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/install-4.2-pleiades-petsc3.3.sh (revision 14272) @@ -0,0 +1,103 @@ +#!/bin/bash +set -eu + +#Some cleanup +rm -rf Dakota +rm -rf src +rm -rf install +mkdir src install + +#Download from ISSM server +$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' + +#Untar +tar -zxvf Dakota_4_3.src.tar.gz + +#Move Dakota to src directory +mv Dakota/* src +rm -rf Dakota + +#Apply patches +patch src/src/ParallelLibrary.C ./ParallelLibrary.C.4.2.patch +patch src/src/ParallelLibrary.H ./ParallelLibrary.H.4.2.patch +patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.4.2.patch +patch src/src/NonDSampling.C ./NonDSampling.C.4.2.patch +patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.4.2.patch +patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.4.2.patch # source not even used? +#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.4.2.patch + +#Configure dakota +cd src +./configure \ +--prefix="$ISSM_DIR/externalpackages/dakota/install/" \ +--without-graphics \ +--with-pic \ +--disable-mpi \ +--with-blas="-L$ISSM_DIR/externalpackages/petsc/install/lib -lfblas " \ +--with-lapack="-L$ISSM_DIR/externalpackages/petsc/install/lib -lflapack " + +#--with-blas="-L/nasa/intel/mkl/10.0.011/lib/64/ -lmkl -lmkl_lapack -liomp5 -lpthread" \ +#--with-lapack="-L/nasa/intel/mkl/10.0.011/lib/64/ -lmkl -lmkl_lapack -liomp5 -lpthread" +#--with-blas="-L/nasa/intel/Compiler/11.1/046/mkl/lib/em64t/ -lmkl_intel_lp64 -lmkl_lapack" \ +#--with-lapack="-L/nasa/intel/Compiler/11.1/046/mkl/lib/em64t/ -lmkl_intel_lp64 -lmkl_lapack" + +cd .. + +#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages +#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC +#flag to the compilation. +cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/NCSUOpt/Makefile + +cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/pebbl/src/Makefile + +cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-nappspack/Makefile + +cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-cddlib/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-conveyor/Makefile + +cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-appspack/Makefile + +cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/colin/src/Makefile + +cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/coliny/src/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/packages/ampl/Makefile + +#Compile and install dakota +cd src +if [ $# -eq 0 ]; +then + make + make install +else + make -j $1 + make -j $1 install +fi +cd .. + +#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! +cd install/lib +mv libamplsolver.a libamplsolver.a.bak +ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: /issm/trunk-jpl/externalpackages/dakota/install-4.2-pleiades.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-4.2-pleiades.sh (revision 14272) +++ /issm/trunk-jpl/externalpackages/dakota/install-4.2-pleiades.sh (revision 14272) @@ -0,0 +1,97 @@ +#!/bin/bash +set -eu + +#Some cleanup +rm -rf Dakota +rm -rf src +rm -rf install +mkdir src install + +#Download from ISSM server +$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' + +#Untar +tar -zxvf Dakota_4_3.src.tar.gz + +#Move Dakota to src directory +mv Dakota/* src +rm -rf Dakota + +#Apply patches +patch src/src/ParallelLibrary.C ./ParallelLibrary.C.4.2.patch +patch src/src/ParallelLibrary.H ./ParallelLibrary.H.4.2.patch +patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.4.2.patch +patch src/src/NonDSampling.C ./NonDSampling.C.4.2.patch +patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.4.2.patch +patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.4.2.patch # source not even used? +#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.4.2.patch + +#Configure dakota +cd src +./configure \ +--prefix="$ISSM_DIR/externalpackages/dakota/install/" \ +--without-graphics \ +--with-pic \ +--disable-mpi \ +--with-blas="-L/nasa/intel/mkl/10.0.011/lib/64/ -lmkl -lmkl_lapack -liomp5 -lpthread" \ +--with-lapack="-L/nasa/intel/mkl/10.0.011/lib/64/ -lmkl -lmkl_lapack -liomp5 -lpthread" +cd .. + +#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages +#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC +#flag to the compilation. +cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/NCSUOpt/Makefile + +cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/pebbl/src/Makefile + +cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-nappspack/Makefile + +cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-cddlib/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-shared/Makefile + +cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-conveyor/Makefile + +cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/methods/hopspack/src-appspack/Makefile + +cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/colin/src/Makefile + +cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/coliny/src/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp +mv temp ./src/methods/acro/packages/tpl/3po/Makefile + +cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp +mv temp ./src/packages/ampl/Makefile + +#Compile and install dakota +cd src +if [ $# -eq 0 ]; +then + make + make install +else + make -j $1 + make -j $1 install +fi +cd .. + +#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! +cd install/lib +mv libamplsolver.a libamplsolver.a.bak +ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk-jpl/externalpackages/dakota/install-altix64-cosmos.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-altix64-cosmos.sh (revision 14271) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C ./ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H ./ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C ./NonDSampling.C.patch -patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas=/opt/intel/mkl/9.1.023/lib/64/libmkl.so \ - --with-lapack=/opt/intel/mkl/9.1.023/lib/64/libmkl_lapack.so -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk-jpl/externalpackages/dakota/install-discover.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-discover.sh (revision 14271) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C ./ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H ./ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C ./NonDSampling.C.patch -patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ ---prefix="$ISSM_DIR/externalpackages/dakota/install/" \ ---without-graphics \ ---with-pic \ ---disable-mpi \ ---with-blas="-L/usr/local/intel/mkl/10.1.2.024/lib/64 -lmkl_lapack -lmkl -lguide -lpthread" \ ---with-lapack="-L/usr/local/intel/mkl/10.1.2.024/lib/64 -lmkl_lapack -lmkl -lguide -lpthread" -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk-jpl/externalpackages/dakota/install-linux64-astrid.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-linux64-astrid.sh (revision 14271) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C ./ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H ./ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C ./NonDSampling.C.patch -patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas=/usr/lib64/libblas.so.3.0.3 \ - --with-lapack=/usr/lib64/liblapack.so.3.0.3 -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk-jpl/externalpackages/dakota/install-linux64-cloud.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-linux64-cloud.sh (revision 14271) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C ./ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H ./ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C ./NonDSampling.C.patch -patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas=/usr/lib/libblas.so \ - --with-lapack=/usr/lib/liblapack.so -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk-jpl/externalpackages/dakota/install-linux64-murdo.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-linux64-murdo.sh (revision 14271) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C ./ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H ./ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C ./NonDSampling.C.patch -patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas=/usr/lib64/libblas.so.3.1.1 \ - --with-lapack=/usr/lib64/liblapack.so.3.1.1 -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk-jpl/externalpackages/dakota/install-macosx64.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-macosx64.sh (revision 14271) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C ./ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H ./ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C ./NonDSampling.C.patch -patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ - --prefix="$ISSM_DIR/externalpackages/dakota/install" \ - --without-graphics \ - --with-pic \ - --disable-mpi \ - --with-blas="-L$ISSM_DIR/externalpackages/petsc/install/lib -lfblas " \ - --with-lapack="-L$ISSM_DIR/externalpackages/petsc/install/lib -lflapack " -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2 -D_NONSTD_SOURCE/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk-jpl/externalpackages/dakota/install-pleiades-petsc3.3.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-pleiades-petsc3.3.sh (revision 14271) +++ (revision ) @@ -1,103 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C ./ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H ./ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C ./NonDSampling.C.patch -patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ ---prefix="$ISSM_DIR/externalpackages/dakota/install/" \ ---without-graphics \ ---with-pic \ ---disable-mpi \ ---with-blas="-L$ISSM_DIR/externalpackages/petsc/install/lib -lfblas " \ ---with-lapack="-L$ISSM_DIR/externalpackages/petsc/install/lib -lflapack " - -#--with-blas="-L/nasa/intel/mkl/10.0.011/lib/64/ -lmkl -lmkl_lapack -liomp5 -lpthread" \ -#--with-lapack="-L/nasa/intel/mkl/10.0.011/lib/64/ -lmkl -lmkl_lapack -liomp5 -lpthread" -#--with-blas="-L/nasa/intel/Compiler/11.1/046/mkl/lib/em64t/ -lmkl_intel_lp64 -lmkl_lapack" \ -#--with-lapack="-L/nasa/intel/Compiler/11.1/046/mkl/lib/em64t/ -lmkl_intel_lp64 -lmkl_lapack" - -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a Index: sm/trunk-jpl/externalpackages/dakota/install-pleiades.sh =================================================================== --- /issm/trunk-jpl/externalpackages/dakota/install-pleiades.sh (revision 14271) +++ (revision ) @@ -1,97 +1,0 @@ -#!/bin/bash -set -eu - -#Some cleanup -rm -rf Dakota -rm -rf src -rm -rf install -mkdir src install - -#Download from ISSM server -$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz' - -#Untar -tar -zxvf Dakota_4_3.src.tar.gz - -#Move Dakota to src directory -mv Dakota/* src -rm -rf Dakota - -#Apply patches -patch src/src/ParallelLibrary.C ./ParallelLibrary.C.patch -patch src/src/ParallelLibrary.H ./ParallelLibrary.H.patch -patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.patch -patch src/src/NonDSampling.C ./NonDSampling.C.patch -patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.patch -patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.patch # source not even used? -#patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.patch - -#Configure dakota -cd src -./configure \ ---prefix="$ISSM_DIR/externalpackages/dakota/install/" \ ---without-graphics \ ---with-pic \ ---disable-mpi \ ---with-blas="-L/nasa/intel/mkl/10.0.011/lib/64/ -lmkl -lmkl_lapack -liomp5 -lpthread" \ ---with-lapack="-L/nasa/intel/mkl/10.0.011/lib/64/ -lmkl -lmkl_lapack -liomp5 -lpthread" -cd .. - -#Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages -#do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC -#flag to the compilation. -cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/NCSUOpt/Makefile - -cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/pebbl/src/Makefile - -cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-nappspack/Makefile - -cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-cddlib/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-shared/Makefile - -cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-conveyor/Makefile - -cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/methods/hopspack/src-appspack/Makefile - -cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/colin/src/Makefile - -cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/coliny/src/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp -mv temp ./src/methods/acro/packages/tpl/3po/Makefile - -cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp -mv temp ./src/packages/ampl/Makefile - -#Compile and install dakota -cd src -if [ $# -eq 0 ]; -then - make - make install -else - make -j $1 - make -j $1 install -fi -cd .. - -#Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing! -cd install/lib -mv libamplsolver.a libamplsolver.a.bak -ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a