Index: sm/workshop/2012/Talks/10_PIG_UQ/10_PIG_UQ.tex =================================================================== --- /issm/workshop/2012/Talks/10_PIG_UQ/10_PIG_UQ.tex (revision 14038) +++ (revision ) @@ -1,325 +1,0 @@ -%Preamble {{{1 -\documentclass[9pt,notes=hide]{beamer} % Document class: beamer %8 pts is also a good option -\usetheme[jpl,headstyle=institute,fnolabel=,sidebar=.15\paperwidth,footstyle=low,footsep={ $\cdot$ },TPomitframeno]{Pasadena} -\useinnertheme{MLHacks} % ISSM bonuses (ghostframes for example) -\usepackage[T1]{fontenc} % T1 encoding is better for foreign langages -\usepackage{aeguill,aecompl} % Virtual fonts -\usepackage{amsmath,amssymb,amsfonts}% Mathematical symbols (useful for equations) -\usepackage{bm} % maths letters, real = IR -\usepackage{xcolor} % We can define new colors -\usepackage{graphicx} % Include pictures -\usepackage{times} % Use Times Font instead of default -\usepackage{appendixnumberbeamer} -\usepackage[framed,numbered,autolinebreaks,useliterate]{mcode} -\usepackage{booktabs} %nice tables (toprule, bottomrule,...) -\graphicspath{ % directories where the pictures are located -{Images/} -} -\hypersetup{pdfstartview={Fit}} % Acrobat reader: open fit to screen - -\setbeamercovered{transparent} %invisible, transparent, dynamic, highly dynamic -%}}} -%Newcommands {{{1 -%%Automatically insert outline slide at the begining of each new section (very nice!) -%\AtBeginSection[]{ -%\begin{frame} -% \ghostframe %do not count slide -% \frametitle{Outline} % title of the slide -% \tableofcontents[currentsection] -%\end{frame} -%} -%}}} -%Presentation properties{{{1 -%between brackets []: shown on headers and footers of every slide (must be short) -%between parenthesis (): shown on title page only (long) -\title[PIG: UQ Application]{Ice Sheet System model} -\subtitle{Application to Pine Island Glacier: Uncertainty Quantification (ice thickness, ice rigidity and basal -friction).} -\author[Larour et al.]{ -\textbf{Eric \textsc{Larour}}\inst{1}, -Eric \textsc{Rignot}\inst{1,2}, -Mathieu \textsc{Morlighem}\inst{2}, -H\'el\`ene \textsc{Seroussi}\inst{1} -Nicole \textsc{Schlegel}\inst{1}, -Chris \textsc{Borstad}\inst{1}, -Feras \textsc{Habbal}\inst{1,2}, -Daria \textsc{Halkides}\inst{1,3}, -Gilberto \textsc{Perez}\inst{1}, -John \textsc{Schiermeier}\inst{1}, -Michiel \textsc{Helsen}\inst{2} -\vspace{1em} -} -\institute[Jet Propulsion Laboratory]{ -\inst{1}Jet Propulsion Laboratory - California Institute of Technology\\ -\inst{2}University of California, Irvine\\ -\inst{3}Joint Institute for Regional Earth System Science \& Engineering, UCLA -} -\conference[ISSM Workshop 2012]{ISSM Workshop 2012} -\date[]{\hspace{-15em}December 2012\hspace{3em}\copyright Copyright 2012. All rights reserved} -\logo{\includegraphics[width=8em]{ISSMlogo}} -%}}} - -\begin{document} - -%Title slide %{{{1 -\begin{frame}[plain] %No headers or footers - %Do not change, this page is automatically generated - \ghostframe - \titlepage -\end{frame} %}}} -\begin{frame}{Overview}%{{{1 - \tableofcontents -\end{frame}%}}} - -\section{Introduction} - -\begin{frame}{Introduction}%{{{1 - - Follow on study on Pine Island Glacier. Apply Uncertainty Quantification tools (based on the Dakota - framework) to quantify the propagation of errors in model inputs through a diagnostic solution of the - 2D SSA model (MacAyeal), and assess the sensitivity of model outputs (mass flux at different flux gates - across Pine Island Glacier) to model inputs. - \vspace{1em} - - Steps: - \small{ - \begin{itemize} - \item Load 09 PIG Application results (starting from the end of the basal friction inversion) - \item Load ice thickness cross-over errors from IceBridge 2009 WAIS campaign - \item Run sampling analysis using ice thickness cross-over and mass flux diagnostics. - \item Run sensitivity analysis using ice thickness, ice rigidity and basal friction as inputs and mass - flux diagnostics - \item Plot results - \end{itemize} - } - \vspace{2em} - -\end{frame}%}}} - -\section{Flux Gates} - -\begin{frame}{First Step: plot gates}%{{{1 - - The flux gates we will rely on are all in \alert{Exp\_Par/MassFluxes}. There are 13 of them. We will compute - mass fluxes (in Gt/yr) for all of these gates (using the depth-averaged ice velocity, ice thickness and ice - density). - - Run step 1 of the runme.m file to plot the gates, overlayed over the ice velocity (from our model inversion - of the basal friction) - - \lstinputlisting[firstnumber=17,firstline=17,lastline=32,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} - - \vspace{1em} - - The gates are positioned across PIG at the inset of tributary glaciers. - -\end{frame} - -\begin{frame}{Load Cross-Over errors for ice thickness} - - Next, adapt your mesh to SeaRISE velocities and thickness. The data resides in: - - \lstinputlisting[firstnumber=5,firstline=5,lastline=5,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} - - Adapt: - \small { - \begin{itemize} - - \item Fill \alert{md.inversion.vx\_obs}, \alert{md.inversion.vy\_obs}, and \alert{md.inversion.vel\_obs} with interpolated velocities - \item Fill \alert{md.geometry.thickness} with interpolated thickness - \item Mesh adapt your model (bamg) - \begin{itemize} - \item Use the fields \alert{md.inversion.vel\_obs} and \alert{md.geometry.thickness} - \item Set hmax=400000m and hmin=80000m - \end {itemize} - - \item Set model lat/long using SeaRISE projection information (see - projection information in \alert{Greenland\_5km\_dev1.2.nc} - Hint: in matlab you can use ndisp) - \item Save your model to a file - \end {itemize} - } - -\end{frame} - -\begin{frame}{Mesh, 3/3}{Check Your Work} - \vspace{1em} - Solution: - \lstinputlisting[firstnumber=39,firstline=39,lastline=45,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} - - \vspace{1em} - Plot your mesh. It should look like: - - \center{ - \includegraphics[width=0.4\textwidth]{Mesh} - } - -\end{frame}%}}} - -\begin{frame}{Mesh}{ Full Solution}%{{{1 - - \lstinputlisting[firstnumber=22,firstline=22,lastline=45,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} - -\end{frame}%}}} - -\section{Parameterization} - -\begin{frame}{Parameterization}%{{{1 - - Call the \alert{setmask} function with empty arguments and then parameterize your mesh with file \alert{Exp\_Par/Greenland.par}. - - \vspace{1em} - Read though the parameter file \alert{Exp\_Par/Greenland.par}, similar to your Jks par file. - \vspace{1em} - - NB: No function is called to define boundary conditions. Instead, set \alert{spc} velocities - explicitly to zero, ensuring non-singularity. - - \lstinputlisting[firstnumber=95,firstline=95,lastline=103,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{Exp_Par/Greenland.par} - -\end{frame}%}}} -\begin{frame}{Parameterization}{Solution}%{{{1 - \lstinputlisting[firstnumber=52,firstline=52,lastline=56,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} - - \vspace{1em} - Plot thickness and velocity. - \lstinputlisting[basicstyle=\lstbasicfont\scriptsize]{Code/plotparam.m} - \vspace{1em} - They should look like: - - \center{ - \includegraphics[width=0.4\textwidth]{Init_thickness}\includegraphics[width=0.4\textwidth]{Init_vel} - } -\end{frame}%}}} - -\section{Control Method Solution} - -\begin{frame}\frametitle{Diagnostic}%{{{1 - \vspace{1em} - Use control methods to inversely solve for Greenland \alert{FrictionCoefficient} - \vspace{1em} - - Steps: - \begin{itemize} - - \item Set \alert{cost functions} - \begin{itemize} - \item log of surface velocity - \item drag coefficient gradient - \end{itemize} - \item Set \alert{cost functions coefficient} to 8*10\textsuperscript{-15} - \item Specify \alert{max inversion parameter} = 200, \alert{min inversion parameter} = 1 - \item Solve a 50-step Diagnostic in 2D, Macayeal - \item Copy result \alert{Vx}, \alert{Vy}, and \alert{Friction Coefficient} to model values - \item Save your model - \end{itemize} - \vspace{1em} - Startoff Code: - \lstinputlisting[firstnumber=62,firstline=62,lastline=69,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} - NB: Remember that \alert{md.inversion} can be called for help! - -\end{frame}%}}} - -\begin{frame}{Diagnostic}{Solution}%{{{1 - \lstinputlisting[firstnumber=71,firstline=71,lastline=91,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} - -\end{frame}%}}} - -\section{Transient Solution} - -\begin{frame}{Transient}{Forcing}%{{{1 - - You are ready to run a transient! - - \vspace{1em} - Simulate Greenland warming by forcing a temporal decrease in \alert{md.surfaceforcings.mass\_balance}: - - \includegraphics[width=0.9\textwidth]{Forcing_smb} - - \vspace{1em} - - Specify a transient forcing by adding a time value to the end (in the \alert{end+1} position) of the column of forcing variable values. For example, let \alert{smb} be the initial values of surface mass balance. To impose the forcing above: - - \lstinputlisting[basicstyle=\lstbasicfont\scriptsize]{Code/smb.m} - - \small{ - NB: Prior to first and after last imposed time, forcing values remain constant. Between imposed times, forcings are linearly interpolated. - } -\end{frame}%}}} - -\begin{frame}{Transient}{Solve}%{{{1 - Set up your transient - - \vspace{1em} - Steps: - \begin{itemize} - \item Set zero \alert{basal melting rate} - \item Interpolate surface mass balance from SeaRISE dataset - \item Impose SeaRise surface mass balance for 10 years then linearly decrease to 1 m/yr by year 20 - \item Set \alert{time step} to 0.2 and \alert{output frequency} to 1 - \item Solve a 20 year Transient in 2D, Macayeal - \item Save your model - \end{itemize} - \vspace{1em} - NB: Save the \alert{IceVolume} in your transient results for plotting later: - \lstinputlisting[firstnumber=118,firstline=118,lastline=118,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} -\end{frame}%}}} - -\begin{frame}{Transient}{Solution Setup}%{{{1 - \lstinputlisting[firstnumber=98,firstline=98,lastline=126,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} - -\end{frame}%}}} - - -\section{Plot Results} - -\begin{frame}{Transient Results}{Plot Plan}%{{{1 - - \vspace{1em} - - Your results are located in \alert{md.results.TransientSolution}. Plot your results. - - \vspace{1em} - First, plot the initial plan view of velocity, surface mass balance, thickness, and surface in one row of three subplots. - - \vspace{1em} - They should look like: - - \center{ - \includegraphics[width=1.0\textwidth]{Transient_plan} - } -\end{frame} -%}}} -\begin{frame}{Plot}{Solution}%{{{1 - \lstinputlisting[firstnumber=134,firstline=134,lastline=142,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} - - \vspace{1em} - - Next, plot a timeseries of mean surface mass balance, mean velocity, and ice volume. Hint to plot mean surface mass balance results: - - \lstinputlisting[firstnumber=145,firstline=145,lastline=150,basicstyle=\lstbasicfont\scriptsize,numberstyle=\tiny,tabsize=1]{runme.m} -\end{frame} -\begin{frame} - - \vspace{1em} - Your results should look like: - - \center{ - \includegraphics[width=0.9\textwidth]{Transient_line} - } -\end{frame} -%}}} - - -%Thanks slide{{{ -\usebackgroundtemplate{\includegraphics[width=\paperwidth,height=\paperheight]{Thanksbg}} -\begin{frame}[plain] - \ghostframe - \begin{center} - \vspace*{-0.1\paperheight} - \hspace*{-0.15\paperwidth}\Huge{Thanks!} - \end{center} - \note{Thank you very much for your attention} -\end{frame} -\usebackgroundtemplate{} -%}}} -\end{document} Index: sm/workshop/2012/Talks/10_PIG_UQ/Makefile =================================================================== --- /issm/workshop/2012/Talks/10_PIG_UQ/Makefile (revision 14038) +++ (revision ) @@ -1,36 +1,0 @@ -#Makefile for beamer -TARGET=10_PIG_UQ - -export TEXINPUTS=$(JPL_SVN)/publications/templates/beamer/Theme/Pasadena//: -all: one - -one: - pdflatex -halt-on-error -file-line-error $(TARGET).tex - open $(TARGET).pdf - -complete: - pdflatex -halt-on-error -file-line-error -draftmode $(TARGET).tex - #bibtex $(TARGET) - pdflatex -halt-on-error -file-line-error -draftmode $(TARGET).tex - pdflatex -halt-on-error -file-line-error $(TARGET).tex - open $(TARGET).pdf - -bib: - bibtex $(TARGET) - -links: - ln -s $(JPL_SVN)/publications/templates/beamer/Theme/Pasadena/*.sty . - ln -s $(JPL_SVN)/publications/templates/beamer/Theme/Pasadena/general/*.sty . - ln -s $(JPL_SVN)/publications/templates/beamer/Theme/Pasadena/subtheme/*.sty . - ln -s $(JPL_SVN)/publications/templates/beamer/Theme/Pasadena/ML/*.sty . - ln -s $(JPL_SVN)/publications/templates/beamer/Theme/Pasadena/graphics/JPL/*.pdf . - -unlinks: - find . -maxdepth 1 -type l -print | xargs rm - -clean: - rm -rf ${TARGET}.{dvi,ps,pdf,toc,log,aux,out,nav,snm,bbl,blg,vrb} PIG.* PIG-* Temporary* qmu* - -allclean: - make clean - make unlinks Index: sm/workshop/2012/Talks/10_PIG_UQ/mcode.sty =================================================================== --- /issm/workshop/2012/Talks/10_PIG_UQ/mcode.sty (revision 14038) +++ (revision ) @@ -1,280 +1,0 @@ -%% -%% This is file `mcode.sty' -%% -%% It is supposed to help you easily include MATLAB source code -%% into LaTeX document, but have it nicely highlighted, using -%% the great listings package. -%% -%% PLEASE NOTE that this package does nothing but save you from -%% figuring out some configurations in setting up the LISTINGS -%% package. 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