Index: /issm/trunk-jpl/etc/environment.csh
===================================================================
--- /issm/trunk-jpl/etc/environment.csh	(revision 13155)
+++ /issm/trunk-jpl/etc/environment.csh	(revision 13156)
@@ -54,20 +54,8 @@
 endif
 
-#AUTOCONF
-set AUTOCONF_DIR="$ISSM_DIR/externalpackages/autoconf/install"
-if (-d $AUTOCONF_DIR) then
-	setenv PATH {$AUTOCONF_DIR}/bin:{$PATH}
-endif
-
-#AUTOMAKE
-set AUTOMAKE_DIR="$ISSM_DIR/externalpackages/automake/install"
-if (-d $AUTOMAKE_DIR) then
-	setenv PATH {$AUTOMAKE_DIR}/bin:{$PATH}
-endif
-
-#LIBTOOL
-set LIBTOOL_DIR="$ISSM_DIR/externalpackages/libtool/install"
-if (-d $LIBTOOL_DIR) then
-	setenv PATH {$LIBTOOL_DIR}/bin:{$PATH}
+#AUTOTOOLS
+set AUTOTOOLS_DIR="$ISSM_DIR/externalpackages/autotools/install"
+if (-d $AUTOTOOLS_DIR) then
+	setenv PATH {$AUTOTOOLS_DIR}/bin:{$PATH}
 endif
 
Index: /issm/trunk-jpl/etc/environment.sh
===================================================================
--- /issm/trunk-jpl/etc/environment.sh	(revision 13155)
+++ /issm/trunk-jpl/etc/environment.sh	(revision 13156)
@@ -86,12 +86,6 @@
 pathappend "$DOXYGEN_DIR/bin"
 
-AUTOCONF_DIR="$ISSM_DIR/externalpackages/autoconf/install"
-pathprepend "$AUTOCONF_DIR/bin"
-
-AUTOMAKE_DIR="$ISSM_DIR/externalpackages/automake/install"
-pathprepend "$AUTOMAKE_DIR/bin"
-
-LIBTOOL_DIR="$ISSM_DIR/externalpackages/libtool/install"
-pathprepend "$LIBTOOL_DIR/bin"
+AUTOTOOLS_DIR="$ISSM_DIR/externalpackages/autotools/install"
+pathprepend "$AUTOTOOLS_DIR/bin"
 
 SDK_DIR="C:/MicrosoftVisualStudio 9.0/Microsoft Visual C++ 2008 Express Edition with SP1 - ENU"
Index: /issm/trunk-jpl/externalpackages/autotools/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/autotools/install.sh	(revision 13156)
+++ /issm/trunk-jpl/externalpackages/autotools/install.sh	(revision 13156)
@@ -0,0 +1,40 @@
+#!/bin/bash
+
+rm -rf install
+
+#install autoconf
+echo " === INSTALLING AUTOCONF =="
+rm -rf src
+$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/autoconf-2.68.tar.gz' 'autoconf-2.68.tar.gz'
+mkdir install
+tar -zxvf autoconf-2.68.tar.gz
+mv autoconf-2.68 src
+cd src 
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install" 
+make  
+make install
+
+#install automake
+echo " === INSTALLING AUTOMAKE =="
+rm -rf src
+$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/automake-1.11.3.tar.gz' 'automake-1.11.3.tar.gz'
+mkdir install
+tar -zxvf  automake-1.11.3.tar.gz
+mv automake-1.11.3 src
+cd src 
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install" 
+make  
+make install
+
+#install libtool
+echo " === INSTALLING LIBTOOL =="
+rm -rf src
+$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/libtool-2.4.2.tar.gz' 'libtool-2.4.2.tar.gz'
+mkdir install
+tar -zxvf  libtool-2.4.2.tar.gz
+rm libtool-2.4.2.tar.gz
+mv libtool-2.4.2 src
+cd src 
+./configure --prefix="$ISSM_DIR/externalpackages/autotools/install" 
+make  
+make install
Index: /issm/trunk-jpl/scripts/automakererun.sh
===================================================================
--- /issm/trunk-jpl/scripts/automakererun.sh	(revision 13155)
+++ /issm/trunk-jpl/scripts/automakererun.sh	(revision 13156)
@@ -9,3 +9,3 @@
 
 cd $ISSM_DIR
-autoreconf -iv -I externalpackages/libtool/install/share/aclocal
+autoreconf -iv