Index: /issm/trunk-jpl/src/m/classes/clusters/generic.py
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/generic.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/classes/clusters/generic.py	(revision 12944)
@@ -14,7 +14,7 @@
 	GENERIC cluster class definition
  
-	    Usage:
-	       cluster=generic('name','astrid','np',3);
-	       cluster=generic('name',oshostname(),'np',3,'login','username');
+	   Usage:
+	      cluster=generic('name','astrid','np',3);
+	      cluster=generic('name',oshostname(),'np',3,'login','username');
 	"""
 
Index: /issm/trunk-jpl/src/m/classes/pairoptions.py
===================================================================
--- /issm/trunk-jpl/src/m/classes/pairoptions.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/classes/pairoptions.py	(revision 12944)
@@ -5,7 +5,7 @@
 	PAIROPTIONS class definition
  
-	    Usage:
-	       pairoptions=pairoptions();
-	       pairoptions=pairoptions('module',true,'solver',false);
+	   Usage:
+	      pairoptions=pairoptions();
+	      pairoptions=pairoptions('module',true,'solver',false);
 	"""
 
Index: /issm/trunk-jpl/src/m/model/AnalysisConfiguration.py
===================================================================
--- /issm/trunk-jpl/src/m/model/AnalysisConfiguration.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/AnalysisConfiguration.py	(revision 12944)
@@ -5,6 +5,6 @@
 	ANALYSISCONFIGURATION - return type of analyses, number of analyses 
 
-	    Usage:
-	       [analyses, numanalyses]=AnalysisConfiguration(solutiontype);
+	   Usage:
+	      [analyses, numanalyses]=AnalysisConfiguration(solutiontype);
 	"""
 
Index: /issm/trunk-jpl/src/m/model/MatlabProcessPatch.py
===================================================================
--- /issm/trunk-jpl/src/m/model/MatlabProcessPatch.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/MatlabProcessPatch.py	(revision 12944)
@@ -3,6 +3,6 @@
 	PROCESSPATCH - create a structure from a patch
  
-	    Usage:
-	       Result=ProcessPatch(Result);
+	   Usage:
+	      Result=ProcessPatch(Result);
 	"""
 
Index: /issm/trunk-jpl/src/m/model/WriteData.py
===================================================================
--- /issm/trunk-jpl/src/m/model/WriteData.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/WriteData.py	(revision 12944)
@@ -8,6 +8,6 @@
 	WRITEDATA - write model field in binary file
  
-	    Usage:
-	       WriteData(fid,varargin)
+	   Usage:
+	      WriteData(fid,varargin)
 	"""
 
Index: /issm/trunk-jpl/src/m/model/addnote.py
===================================================================
--- /issm/trunk-jpl/src/m/model/addnote.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/addnote.py	(revision 12944)
@@ -2,10 +2,10 @@
 	"""
 	ADDNOTE - add a note to the existing model notes field
-	 
-	    Usage:
-	       md=addnote(md,string);
-	 
-	    Example:
-	       md=addnote(md,'Pine Island, Geometry of 2007');
+
+	   Usage:
+	      md=addnote(md,string);
+
+	   Example:
+	      md=addnote(md,'Pine Island, Geometry of 2007');
 	"""
 
Index: /issm/trunk-jpl/src/m/model/ismodelselfconsistent.py
===================================================================
--- /issm/trunk-jpl/src/m/model/ismodelselfconsistent.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/ismodelselfconsistent.py	(revision 12944)
@@ -5,6 +5,6 @@
 	ISMODELSELFCONSISTENT - check that model forms a closed form solvable problem.
 
-	    Usage:
-	       ismodelselfconsistent(md),
+	   Usage:
+	      ismodelselfconsistent(md),
 	"""
 
Index: /issm/trunk-jpl/src/m/model/loadresultsfromcluster.py
===================================================================
--- /issm/trunk-jpl/src/m/model/loadresultsfromcluster.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/loadresultsfromcluster.py	(revision 12944)
@@ -8,6 +8,6 @@
 	LOADRESULTSFROMCLUSTER - load results of solution sequence from cluster
  
-	    Usage:
-	       md=loadresultsfromcluster(md,runtimename);
+	   Usage:
+	      md=loadresultsfromcluster(md,runtimename);
 	"""
 
Index: /issm/trunk-jpl/src/m/model/loadresultsfromdisk.py
===================================================================
--- /issm/trunk-jpl/src/m/model/loadresultsfromdisk.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/loadresultsfromdisk.py	(revision 12944)
@@ -5,6 +5,6 @@
 	LOADRESULTSFROMDISK - load results of solution sequence from disk file "filename"            
  
-	    Usage:
-	       md=loadresultsfromdisk(md=False,filename=False);
+	   Usage:
+	      md=loadresultsfromdisk(md=False,filename=False);
 	"""
 
Index: /issm/trunk-jpl/src/m/model/marshall.py
===================================================================
--- /issm/trunk-jpl/src/m/model/marshall.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/marshall.py	(revision 12944)
@@ -5,9 +5,9 @@
 	MARSHALL - outputs a compatible binary file from @model md, for certain solution type.
 
-	    The routine creates a compatible binary file from @model md
-	    This binary file will be used for parallel runs in JPL-package
+	   The routine creates a compatible binary file from @model md
+	   This binary file will be used for parallel runs in JPL-package
 
-	    Usage:
-	       marshall(md)
+	   Usage:
+	      marshall(md)
 	"""
 
Index: /issm/trunk-jpl/src/m/model/parameterization/parameterize.py
===================================================================
--- /issm/trunk-jpl/src/m/model/parameterization/parameterize.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/parameterization/parameterize.py	(revision 12944)
@@ -6,14 +6,14 @@
 	"""
 	PARAMETERIZE - parameterize a model
-	 
-	    from a parameter python file, start filling in all the model fields that were not 
-	    filled in by the mesh.py and mask.py model methods.
-	    Warning: the parameter file must be able to be run in Python
-	 
-	    Usage:
-	       md=parameterize(md,parametername)
-	 
-	    Example:
-	       md=parameterize(md,'Square.par');
+
+	   from a parameter python file, start filling in all the model fields that were not 
+	   filled in by the mesh.py and mask.py model methods.
+	   Warning: the parameter file must be able to be run in Python
+
+	   Usage:
+	      md=parameterize(md,parametername)
+
+	   Example:
+	      md=parameterize(md,'Square.par');
 	"""
 
Index: /issm/trunk-jpl/src/m/model/parseresultsfromdisk.py
===================================================================
--- /issm/trunk-jpl/src/m/model/parseresultsfromdisk.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/parseresultsfromdisk.py	(revision 12944)
@@ -7,7 +7,7 @@
 	"""
 	PARSERESULTSFROMDISK - ...
-	 
-	    Usage:
-	       results=parseresultsfromdisk(filename,iosplit)
+
+	   Usage:
+	      results=parseresultsfromdisk(filename,iosplit)
 	"""
 
Index: /issm/trunk-jpl/src/m/model/petscversion.py
===================================================================
--- /issm/trunk-jpl/src/m/model/petscversion.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/petscversion.py	(revision 12944)
@@ -7,6 +7,6 @@
 	PETSCVERSION - recover petsc version number, inside config.h file
  
-	    Usage:
-	        PETSC_VERSION=petscversion();
+	   Usage:
+	      PETSC_VERSION=petscversion();
 	"""
 
Index: /issm/trunk-jpl/src/m/model/process_solve_options.py
===================================================================
--- /issm/trunk-jpl/src/m/model/process_solve_options.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/process_solve_options.py	(revision 12944)
@@ -6,8 +6,8 @@
 	DEFAULT_SOLVE_OPTIONS - set up default options for solve phase
  
-	    Usage:
-	       options=process_solve_options(options)
+	   Usage:
+	      options=process_solve_options(options)
  
-	    See also: SOLVE
+	   See also: SOLVE
 	"""
 
Index: /issm/trunk-jpl/src/m/model/recover_areas.py
===================================================================
--- /issm/trunk-jpl/src/m/model/recover_areas.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/recover_areas.py	(revision 12944)
@@ -6,8 +6,8 @@
 	RECOVER_AREAS - flag the element depending on the physical model that is assigned to them
 
-	    This routine is called by setelementstype, do not use
+	   This routine is called by setelementstype, do not use
 
-	    Usage:
-	       [hutterflag macayealflag pattynflag stokesflag filltype]=recover_areas(md,varargin);
+	   Usage:
+	      [hutterflag macayealflag pattynflag stokesflag filltype]=recover_areas(md,varargin);
 	"""
 
Index: /issm/trunk-jpl/src/m/model/setflowequation.py
===================================================================
--- /issm/trunk-jpl/src/m/model/setflowequation.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/setflowequation.py	(revision 12944)
@@ -9,20 +9,20 @@
 	SETELEMENTSTYPE - associate a solution type to each element
 
-	    This routine works like plotmodel: it works with an even number of inputs
-	    'hutter','macayeal','pattyn','stokes' and 'fill' are the possible options
-	    that must be followed by the corresponding exp file or flags list
-	    It can either be a domain file (argus type, .exp extension), or an array of element flags. 
-	    If user wants every element outside the domain to be 
-	    setflowequationd, add '~' to the name of the domain file (ex: '~Pattyn.exp');
-	    an empty string '' will be considered as an empty domain
-	    a string 'all' will be considered as the entire domain
-	    You can specify the type of coupling, 'penalties' or 'tiling', to use with the input 'coupling'
-
-	    Usage:
-	       md=setflowequation(md,varargin)
-
-	    Example:
-	       md=setflowequation(md,'pattyn','Pattyn.exp','macayeal',md.mask.elementonfloatingice,'fill','hutter');
-	       md=setflowequation(md,'pattyn','Pattyn.exp',fill','hutter','coupling','tiling');
+	   This routine works like plotmodel: it works with an even number of inputs
+	   'hutter','macayeal','pattyn','stokes' and 'fill' are the possible options
+	   that must be followed by the corresponding exp file or flags list
+	   It can either be a domain file (argus type, .exp extension), or an array of element flags. 
+	   If user wants every element outside the domain to be 
+	   setflowequationd, add '~' to the name of the domain file (ex: '~Pattyn.exp');
+	   an empty string '' will be considered as an empty domain
+	   a string 'all' will be considered as the entire domain
+	   You can specify the type of coupling, 'penalties' or 'tiling', to use with the input 'coupling'
+
+	   Usage:
+	      md=setflowequation(md,varargin)
+
+	   Example:
+	      md=setflowequation(md,'pattyn','Pattyn.exp','macayeal',md.mask.elementonfloatingice,'fill','hutter');
+	      md=setflowequation(md,'pattyn','Pattyn.exp',fill','hutter','coupling','tiling');
 	"""
 
Index: /issm/trunk-jpl/src/m/model/solve.py
===================================================================
--- /issm/trunk-jpl/src/m/model/solve.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/solve.py	(revision 12944)
@@ -11,25 +11,25 @@
 	SOLVE - apply solution sequence for this model
  
-	    Usage:
-	       md=solve(md,solutionenum,varargin)
-	       where varargin is a list of paired arguments of string OR enums
+	   Usage:
+	      md=solve(md,solutionenum,varargin)
+	      where varargin is a list of paired arguments of string OR enums
  
-	    solution types available comprise:
-	 		 - DiagnosticSolutionEnum
-	 		 - PrognosticSolutionEnum
-	 		 - ThermalSolutionEnum
-	 		 - SteadystateSolutionEnum
-	 		 - TransientSolutionEnum...
-	 		 - BalancethicknessSolutionEnum
-	 		 - BedSlopeSolutionEnum
-	 		 - SurfaceSlopeSolutionEnum
-	 		 - HydrologySolutionEnum
-	 		 - FlaimSolutionEnum
+	   solution types available comprise:
+		  - DiagnosticSolutionEnum
+	 	  - PrognosticSolutionEnum
+	 	  - ThermalSolutionEnum
+	 	  - SteadystateSolutionEnum
+	 	  - TransientSolutionEnum...
+	 	  - BalancethicknessSolutionEnum
+	 	  - BedSlopeSolutionEnum
+	 	  - SurfaceSlopeSolutionEnum
+	 	  - HydrologySolutionEnum
+	 	  - FlaimSolutionEnum
  
 	   extra options:
-	       - loadonly : does not solve. only load results
+	      - loadonly : does not solve. only load results
  
-	    Examples:
-	       md=solve(md,DiagnosticSolutionEnum);
+	   Examples:
+	      md=solve(md,DiagnosticSolutionEnum);
 	"""
 
Index: /issm/trunk-jpl/src/m/model/waitonlock.py
===================================================================
--- /issm/trunk-jpl/src/m/model/waitonlock.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/model/waitonlock.py	(revision 12944)
@@ -8,9 +8,9 @@
 	WAITONLOCK - wait for a file
  
-	    This routine will return when a file named 'filename' is written to disk.
-	    If the time limit given in input is exceeded, return 0
+	   This routine will return when a file named 'filename' is written to disk.
+	   If the time limit given in input is exceeded, return 0
  
-	    Usage:
-	       flag=waitonlock(md,executionpath)
+	   Usage:
+	      flag=waitonlock(md,executionpath)
 	"""
 
Index: /issm/trunk-jpl/src/m/utils/BC/SetIceShelfBC.py
===================================================================
--- /issm/trunk-jpl/src/m/utils/BC/SetIceShelfBC.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/utils/BC/SetIceShelfBC.py	(revision 12944)
@@ -5,17 +5,17 @@
 	"""
 	SETICESHELFBC - Create the boundary conditions for diagnostic and thermal models for a  Ice Shelf with Ice Front
-	 
-	    Neumann BC are used on the ice front (an ANRGUS contour around the ice front
-	    must be given in input)
-	    Dirichlet BC are used elsewhere for diagnostic
-	 
-	    Usage:
-	       md=SetIceShelfBC(md,varargin)
-	 
-	    Example:
-	       md=SetIceShelfBC(md);
-	       md=SetIceShelfBC(md,'Front.exp');
-	 
-	    See also: SETICESHEETBC, SETMARINEICESHEETBC
+
+	   Neumann BC are used on the ice front (an ANRGUS contour around the ice front
+	   must be given in input)
+	   Dirichlet BC are used elsewhere for diagnostic
+
+	   Usage:
+	      md=SetIceShelfBC(md,varargin)
+
+	   Example:
+	      md=SetIceShelfBC(md);
+	      md=SetIceShelfBC(md,'Front.exp');
+
+	   See also: SETICESHEETBC, SETMARINEICESHEETBC
 	"""
 
Index: /issm/trunk-jpl/src/m/utils/Cluster/parallelrange.py
===================================================================
--- /issm/trunk-jpl/src/m/utils/Cluster/parallelrange.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/utils/Cluster/parallelrange.py	(revision 12944)
@@ -4,6 +4,6 @@
 	PARALLELRANGE - from a rank, and a number of processors, figure out a range, for parallel tasks.
  
-	    Usage: 
-	       i1,i2=parallelrange(rank,numprocs,globalsize)
+	   Usage: 
+	      i1,i2=parallelrange(rank,numprocs,globalsize)
 	"""
 
Index: /issm/trunk-jpl/src/m/utils/Geometry/FlagElements.py
===================================================================
--- /issm/trunk-jpl/src/m/utils/Geometry/FlagElements.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/utils/Geometry/FlagElements.py	(revision 12944)
@@ -9,15 +9,15 @@
 	FLAGELEMENTS - flag the elements in an region
 
-	    The region can be given with an exp file, a list of elements.
+	   The region can be given with an exp file, a list of elements.
 
-	    Usage: 
-	       flag=FlagElements(md,region);
+	   Usage: 
+	      flag=FlagElements(md,region);
 
-	    Example:
-	       flag=FlagElements(md,'all');
-	       flag=FlagElements(md,'');
-	       flag=FlagElements(md,'Domain.exp');
-	       flag=FlagElements(md,'~Domain.exp');
-	       flag=FlagElements(md,md.mask.elementongroundedice);
+	   Example:
+	      flag=FlagElements(md,'all');
+	      flag=FlagElements(md,'');
+	      flag=FlagElements(md,'Domain.exp');
+	      flag=FlagElements(md,'~Domain.exp');
+	      flag=FlagElements(md,md.mask.elementongroundedice);
 	"""
 
Index: /issm/trunk-jpl/src/m/utils/OS/ismumps.py
===================================================================
--- /issm/trunk-jpl/src/m/utils/OS/ismumps.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/utils/OS/ismumps.py	(revision 12944)
@@ -7,6 +7,6 @@
 	ISMUMPS - figure out if MUMPS package was compiled with ISSM
  
-	    Usage:
-	        flag=ismumps();
+	   Usage:
+	      flag=ismumps();
 	"""
 
Index: /issm/trunk-jpl/src/m/utils/OS/ispetsc.py
===================================================================
--- /issm/trunk-jpl/src/m/utils/OS/ispetsc.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/utils/OS/ispetsc.py	(revision 12944)
@@ -7,6 +7,6 @@
 	ISPETSC - figure out if PETSC package was compiled with ISSM
  
-	    Usage:
-	        flag=ispetsc();
+	   Usage:
+	      flag=ispetsc();
 	"""
 
Index: /issm/trunk-jpl/src/m/utils/OS/issmscpin.py
===================================================================
--- /issm/trunk-jpl/src/m/utils/OS/issmscpin.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/utils/OS/issmscpin.py	(revision 12944)
@@ -10,7 +10,5 @@
 	SCPIN get packages from host, using scp on unix, and pscp on windows
  
-	    usage: scpin(host,packages,path)
- 
- 
+	   usage: scpin(host,packages,path)
 	"""
 
Index: /issm/trunk-jpl/src/m/utils/OS/issmscpout.py
===================================================================
--- /issm/trunk-jpl/src/m/utils/OS/issmscpout.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/utils/OS/issmscpout.py	(revision 12944)
@@ -10,7 +10,5 @@
 	SCPOUT send packages to a host, using scp on unix, and pscp on windows
  
-	    usage: scpout(host,path,packages)
- 
- 
+	   usage: scpout(host,path,packages)
 	"""
 
Index: /issm/trunk-jpl/src/m/utils/OS/issmssh.py
===================================================================
--- /issm/trunk-jpl/src/m/utils/OS/issmssh.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/utils/OS/issmssh.py	(revision 12944)
@@ -9,6 +9,6 @@
 	ISSMSSH - wrapper for OS independent ssh command.
  
-	    usage: 
-	       issmssh(host,command)
+	   usage: 
+	      issmssh(host,command)
 	"""
 
Index: /issm/trunk-jpl/src/m/utils/Shell/issmdir.py
===================================================================
--- /issm/trunk-jpl/src/m/utils/Shell/issmdir.py	(revision 12943)
+++ /issm/trunk-jpl/src/m/utils/Shell/issmdir.py	(revision 12944)
@@ -7,6 +7,6 @@
 	ISSMDIR - Get ISSM_DIR environment variable
  
-	    Usage:
-	       ISSM_DIR=issmdir()
+	   Usage:
+	      ISSM_DIR=issmdir()
 	"""