Index: /issm/trunk-jpl/src/m/model/collapse.m
===================================================================
--- /issm/trunk-jpl/src/m/model/collapse.m	(revision 12543)
+++ /issm/trunk-jpl/src/m/model/collapse.m	(revision 12544)
@@ -42,4 +42,5 @@
 if ~isnan(md.initialization.vz),md.initialization.vz=DepthAverage(md,md.initialization.vz);end;
 if ~isnan(md.initialization.vel),md.initialization.vel=DepthAverage(md,md.initialization.vel);end;
+if ~isnan(md.initialization.temperature),md.initialization.temperature=DepthAverage(md,md.initialization.temperature);end;
 
 %bedinfo and surface info
@@ -91,4 +92,5 @@
 md.geometry.thickness=project2d(md,md.geometry.thickness,1);
 md.geometry.bed=project2d(md,md.geometry.bed,1);
+md.geometry.bathymetry=project2d(md,md.geometry.bathymetry,1);
 md.mesh.vertexonboundary=project2d(md,md.mesh.vertexonboundary,1);
 md.mesh.elementconnectivity=project2d(md,md.mesh.elementconnectivity,1);