Index: /issm/trunk-jpl/src/m/classes/clusters/acenet.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/acenet.m	(revision 12370)
+++ /issm/trunk-jpl/src/m/classes/clusters/acenet.m	(revision 12371)
@@ -82,5 +82,5 @@
 
 			 %compress the files into one zip.
-			 compressstring=['tar -zcf ' dirname '.tar.gz ' modelname '.bin ' modelname '.queue '  modelname '.petsc '];
+			 compressstring=['tar -zcf ' dirname '.tar.gz '];
 			 for i=1:numel(filelist),
 				 compressstring = [compressstring ' ' filelist{i}];
@@ -96,5 +96,5 @@
 			 disp('launching solution sequence on remote cluster');
 			 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
-				 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && source  ' modelname '.queue '];
+				 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && qsub ' modelname '.queue '];
 			 issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
 		 end %}}}
Index: /issm/trunk-jpl/src/m/classes/clusters/castor.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/castor.m	(revision 12370)
+++ /issm/trunk-jpl/src/m/classes/clusters/castor.m	(revision 12371)
@@ -115,5 +115,5 @@
 			 disp('launching solution sequence on remote cluster');
 			 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
-				 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && source  ' modelname '.queue '];
+				 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && qsub ' modelname '.queue '];
 			 issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
 		 end %}}}
Index: /issm/trunk-jpl/src/m/classes/clusters/cosmos.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/cosmos.m	(revision 12370)
+++ /issm/trunk-jpl/src/m/classes/clusters/cosmos.m	(revision 12371)
@@ -70,32 +70,24 @@
 		 end
 		 %}}}
-		 function LaunchQueueJob(cluster,md,options)% {{{
-			 
-			 %lauch command, to be executed via ssh
-			 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' md.private.runtimename ' && mkdir ' md.private.runtimename ...
-			                ' && cd ' md.private.runtimename ' && mv ../' md.private.runtimename '.tar.gz ./ && tar -zxf ' md.private.runtimename '.tar.gz  && qsub -S/bin/sh ' modelname '.queue '];
+		 function LaunchQueueJob(cluster,modelname,dirname,filelist)% {{{
 
-			if ~strcmpi(options.batch,'yes'),
-				
-				%compress the files into one zip.
-				compressstring=['tar -zcf ' md.private.runtimename '.tar.gz ' md.miscellaneous.name '.bin ' md.miscellaneous.name '.queue '  md.miscellaneous.name '.petsc '];
-				if md.qmu.isdakota,
-					compressstring=[compressstring md.miscellaneous.name '.qmu.in'];
-				end
-				system(compressstring);
-				
-				disp('uploading input file and queueing script');
-				issmscpout(md.cluster.name,md.cluster.executionpath,md.cluster.login,md.cluster.port,{[md.private.runtimename '.tar.gz']});
-				
-				disp('launching solution sequence on remote cluster');
-				issmssh(md.cluster.name,md.cluster.login,md.cluster.port,launchcommand);
+			 %compress the files into one zip.
+			 compressstring=['tar -zcf ' dirname '.tar.gz '];
+			 for i=1:numel(filelist),
+				 compressstring = [compressstring ' ' filelist{i}];
+			 end
+			 if cluster.interactive,
+				 compressstring = [compressstring ' ' modelname '.errlog ' modelname '.outlog '];
+			 end
+			 system(compressstring);
 
-			else
-				disp('batch mode requested: not launching job interactively');
-				disp('launch solution sequence on remote cluster by hand');
-			end
+			 disp('uploading input file and queueing script');
+			 issmscpout(cluster.name,cluster.executionpath,cluster.login,cluster.port,{[dirname '.tar.gz']});
 
-		 end
-		 %}}}
+			 disp('launching solution sequence on remote cluster');
+			 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
+				 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && qsub ' modelname '.queue '];
+			 issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
+		 end %}}}
 		 function Download(cluster,dirname,filelist)% {{{
 
Index: /issm/trunk-jpl/src/m/classes/clusters/gemini.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/gemini.m	(revision 12370)
+++ /issm/trunk-jpl/src/m/classes/clusters/gemini.m	(revision 12371)
@@ -71,32 +71,24 @@
 		 end
 		 %}}}
-		 function LaunchQueueJob(cluster,md,options)% {{{
-			 
-			 %lauch command, to be executed via ssh
-			 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' md.private.runtimename ' && mkdir ' md.private.runtimename ...
-			                ' && cd ' md.private.runtimename ' && mv ../' md.private.runtimename '.tar.gz ./ && tar -zxf ' md.private.runtimename '.tar.gz  && qsub ' modelname '.queue '];
+		 function LaunchQueueJob(cluster,modelname,dirname,filelist)% {{{
 
-			if ~strcmpi(options.batch,'yes'),
-				
-				%compress the files into one zip.
-				compressstring=['tar -zcf ' md.private.runtimename '.tar.gz ' md.miscellaneous.name '.bin ' md.miscellaneous.name '.queue '  md.miscellaneous.name '.petsc '];
-				if md.qmu.isdakota,
-					compressstring=[compressstring md.miscellaneous.name '.qmu.in'];
-				end
-				system(compressstring);
-				
-				disp('uploading input file and queueing script');
-				issmscpout(md.cluster.name,md.cluster.executionpath,md.cluster.login,md.cluster.port,{[md.private.runtimename '.tar.gz']});
-				
-				disp('launching solution sequence on remote cluster');
-				issmssh(md.cluster.name,md.cluster.login,md.cluster.port,launchcommand);
+			 %compress the files into one zip.
+			 compressstring=['tar -zcf ' dirname '.tar.gz '];
+			 for i=1:numel(filelist),
+				 compressstring = [compressstring ' ' filelist{i}];
+			 end
+			 if cluster.interactive,
+				 compressstring = [compressstring ' ' modelname '.errlog ' modelname '.outlog '];
+			 end
+			 system(compressstring);
 
-			else
-				disp('batch mode requested: not launching job interactively');
-				disp('launch solution sequence on remote cluster by hand');
-			end
+			 disp('uploading input file and queueing script');
+			 issmscpout(cluster.name,cluster.executionpath,cluster.login,cluster.port,{[dirname '.tar.gz']});
 
-		 end
-		 %}}}
+			 disp('launching solution sequence on remote cluster');
+			 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
+				 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && qsub ' modelname '.queue '];
+			 issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
+		 end %}}}
 		 function Download(cluster,dirname,filelist)% {{{
 
Index: /issm/trunk-jpl/src/m/classes/clusters/generic.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/generic.m	(revision 12370)
+++ /issm/trunk-jpl/src/m/classes/clusters/generic.m	(revision 12371)
@@ -106,10 +106,4 @@
 		 %}}}
 		 function LaunchQueueJob(cluster,modelname,dirname,filelist)% {{{
-			 
-			 if ispc,
-				 %launch right here, do not compress or archive
-				 system([modelname '.bat']);
-				 return;
-			 end
 
 			 %compress the files into one zip.
@@ -130,5 +124,5 @@
 				 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && source  ' modelname '.queue '];
 			 issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
-		end %}}}
+		 end %}}}
 		 function Download(cluster,dirname,filelist)% {{{
 
Index: /issm/trunk-jpl/src/m/classes/clusters/greenplanet.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/greenplanet.m	(revision 12370)
+++ /issm/trunk-jpl/src/m/classes/clusters/greenplanet.m	(revision 12371)
@@ -102,44 +102,24 @@
 			 end
 		 end %}}}
-		 function LaunchQueueJob(cluster,md,options)% {{{
-			 
-			 %lauch command, to be executed via ssh
-			 if ~cluster.interactive, 
-				launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' md.private.runtimename ' && mkdir ' md.private.runtimename ...
-			                ' && cd ' md.private.runtimename ' && mv ../' md.private.runtimename '.tar.gz ./ && tar -zxf ' md.private.runtimename '.tar.gz  && qsub ' md.miscellaneous.name '.queue '];
-			else
-				launchcommand=['cd ' cluster.executionpath '/Interactive' num2str(cluster.interactive) ' && tar -zxf ' md.private.runtimename '.tar.gz'];
-			end
+		 function LaunchQueueJob(cluster,modelname,dirname,filelist)% {{{
 
-			if ~strcmpi(options.batch,'yes'),
-				
-				%compress the files into one zip.
-				compressstring=['tar -zcf ' md.private.runtimename '.tar.gz ' md.miscellaneous.name '.bin ' md.miscellaneous.name '.queue '  md.miscellaneous.name '.petsc '];
-				if md.qmu.isdakota,
-					compressstring=[compressstring md.miscellaneous.name '.qmu.in '];
-				end
-				if cluster.interactive,
-					compressstring=[compressstring md.miscellaneous.name '.run ' md.miscellaneous.name '.errlog ' md.miscellaneous.name '.outlog '];
-				end
-				system(compressstring);
-				
-				disp('uploading input file and queueing script');
-				if cluster.interactive,
-					directory=[cluster.executionpath '/Interactive' num2str(cluster.interactive)];
-				else 
-					directory=cluster.executionpath;
-				end
-				
-				issmscpout(cluster.name,directory,cluster.login,cluster.port,{[md.private.runtimename '.tar.gz']});
-				
-				disp('launching solution sequence on remote cluster');
-				issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
+			 %compress the files into one zip.
+			 compressstring=['tar -zcf ' dirname '.tar.gz '];
+			 for i=1:numel(filelist),
+				 compressstring = [compressstring ' ' filelist{i}];
+			 end
+			 if cluster.interactive,
+				 compressstring = [compressstring ' ' modelname '.errlog ' modelname '.outlog '];
+			 end
+			 system(compressstring);
 
-			else
-				disp('batch mode requested: not launching job interactively');
-				disp('launch solution sequence on remote cluster by hand');
-			end
-		 end
-		 %}}}
+			 disp('uploading input file and queueing script');
+			 issmscpout(cluster.name,cluster.executionpath,cluster.login,cluster.port,{[dirname '.tar.gz']});
+
+			 disp('launching solution sequence on remote cluster');
+			 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
+				 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && qsub ' modelname '.queue '];
+			 issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
+		 end %}}}
 		 function Download(cluster,dirname,filelist)% {{{
 
Index: sm/trunk-jpl/src/m/classes/clusters/none.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/none.m	(revision 12370)
+++ 	(revision )
@@ -1,18 +1,0 @@
-%NONE class definition
-%
-%   Usage:
-%      cluster=none();
-%      cluster=none('np',3);
-%      cluster=none('np',3,'login','username');
-
-classdef none
-    properties (SetAccess=public)
-		name='none'
-    end
-    methods
-		 function cluster=none(varargin) % {{{
-			 error('Cannot assign md.cluster to ''none'': ISSM is not available in serial model anymore');
-		 end
-		 %}}}
-	end
-end
Index: /issm/trunk-jpl/src/m/classes/clusters/pollux.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/pollux.m	(revision 12370)
+++ /issm/trunk-jpl/src/m/classes/clusters/pollux.m	(revision 12371)
@@ -70,32 +70,24 @@
 		 end
 		 %}}}
-		 function LaunchQueueJob(cluster,md,options)% {{{
-			 
-			 %lauch command, to be executed via ssh
-			 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' md.private.runtimename ' && mkdir ' md.private.runtimename ...
-			                ' && cd ' md.private.runtimename ' && mv ../' md.private.runtimename '.tar.gz ./ && tar -zxf ' md.private.runtimename '.tar.gz  && qsub ' modelname '.queue '];
+		 function LaunchQueueJob(cluster,modelname,dirname,filelist)% {{{
 
-			if ~strcmpi(options.batch,'yes'),
-				
-				%compress the files into one zip.
-				compressstring=['tar -zcf ' md.private.runtimename '.tar.gz ' md.miscellaneous.name '.bin ' md.miscellaneous.name '.queue '  md.miscellaneous.name '.petsc '];
-				if md.qmu.isdakota,
-					compressstring=[compressstring md.miscellaneous.name '.qmu.in'];
-				end
-				system(compressstring);
-				
-				disp('uploading input file and queueing script');
-				issmscpout(md.cluster.name,md.cluster.executionpath,md.cluster.login,md.cluster.port,{[md.private.runtimename '.tar.gz']});
-				
-				disp('launching solution sequence on remote cluster');
-				issmssh(md.cluster.name,md.cluster.login,md.cluster.port,launchcommand);
+			 %compress the files into one zip.
+			 compressstring=['tar -zcf ' dirname '.tar.gz '];
+			 for i=1:numel(filelist),
+				 compressstring = [compressstring ' ' filelist{i}];
+			 end
+			 if cluster.interactive,
+				 compressstring = [compressstring ' ' modelname '.errlog ' modelname '.outlog '];
+			 end
+			 system(compressstring);
 
-			else
-				disp('batch mode requested: not launching job interactively');
-				disp('launch solution sequence on remote cluster by hand');
-			end
+			 disp('uploading input file and queueing script');
+			 issmscpout(cluster.name,cluster.executionpath,cluster.login,cluster.port,{[dirname '.tar.gz']});
 
-		 end
-		 %}}}
+			 disp('launching solution sequence on remote cluster');
+			 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
+				 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && qsub ' modelname '.queue '];
+			 issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
+		 end %}}}
 		 function Download(cluster,dirname,filelist)% {{{